File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/6a699170756ed683c720d2835643cc/.command.log
Size
4.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bua-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/6a699170756ed683c720d2835643cc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/6a699170756ed683c720d2835643cc/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/027cb6945ccb2ff99e2695a924790c/659_bua-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/142676a07f3b0326549320e333a5a5/659_bua-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TPM3--NTRK1
starfusion
arriba
RARS1--WWC1
starfusion
arriba
CRACD--THEGL
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
ADAMTS2--RARS1
starfusion
arriba
AC013268.1--MALL
starfusion
TVP23C--CDRT4
arriba
ERBIN--ARHGAP26
arriba
TPM4--NTRK1
arriba
AVL9--SEPTIN7
arriba
AVL9--RNU6-1085P
arriba
AC092807.3--DDAH1
arriba
NTRK1--NUP210L
arriba
WWC1--ADAMTS2
arriba

  0%|          | 0/15 [00:00<?, ?it/s]
Processing TPM3--NTRK1:   0%|          | 0/15 [00:00<?, ?it/s]
Processing TPM3--NTRK1:   7%|▋         | 1/15 [00:00<00:01,  9.25it/s]
Processing RARS1--WWC1:   7%|▋         | 1/15 [00:00<00:01,  9.25it/s]
Processing RARS1--WWC1:  13%|█▎        | 2/15 [00:00<00:01,  9.47it/s]
Processing CRACD--THEGL:  13%|█▎        | 2/15 [00:00<00:01,  9.47it/s]
Processing CRACD--THEGL:  20%|██        | 3/15 [00:00<00:01,  9.55it/s]
Processing TLK2--AC240565.1:  20%|██        | 3/15 [00:00<00:01,  9.55it/s]
Processing TLK2--AC240565.1:  27%|██▋       | 4/15 [00:00<00:01,  9.59it/s]
Processing TLK2P1--AC110079.1:  27%|██▋       | 4/15 [00:00<00:01,  9.59it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 5/15 [00:00<00:01,  9.61it/s]
Processing ADAMTS2--RARS1:  33%|███▎      | 5/15 [00:00<00:01,  9.61it/s]    
Processing ADAMTS2--RARS1:  40%|████      | 6/15 [00:00<00:00,  9.62it/s]
Processing AC013268.1--MALL:  40%|████      | 6/15 [00:00<00:00,  9.62it/s]
Processing AC013268.1--MALL:  47%|████▋     | 7/15 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  47%|████▋     | 7/15 [00:00<00:00,  9.63it/s]   
Processing TVP23C--CDRT4:  53%|█████▎    | 8/15 [00:00<00:00,  9.63it/s]
Processing ERBIN--ARHGAP26:  53%|█████▎    | 8/15 [00:00<00:00,  9.63it/s]
Processing ERBIN--ARHGAP26:  60%|██████    | 9/15 [00:00<00:00,  9.64it/s]
Processing TPM4--NTRK1:  60%|██████    | 9/15 [00:00<00:00,  9.64it/s]    
Processing TPM4--NTRK1:  67%|██████▋   | 10/15 [00:01<00:00,  9.64it/s]
Processing AVL9--SEPTIN7:  67%|██████▋   | 10/15 [00:01<00:00,  9.64it/s]
Processing AVL9--SEPTIN7:  73%|███████▎  | 11/15 [00:01<00:00,  9.64it/s]
Processing AVL9--RNU6-1085P:  73%|███████▎  | 11/15 [00:01<00:00,  9.64it/s]
Processing AVL9--RNU6-1085P:  80%|████████  | 12/15 [00:01<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  80%|████████  | 12/15 [00:01<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  87%|████████▋ | 13/15 [00:01<00:00,  9.64it/s]
Processing NTRK1--NUP210L:  87%|████████▋ | 13/15 [00:01<00:00,  9.64it/s]   
Processing NTRK1--NUP210L:  93%|█████████▎| 14/15 [00:01<00:00,  9.65it/s]
Processing WWC1--ADAMTS2:  93%|█████████▎| 14/15 [00:01<00:00,  9.65it/s] 
Processing WWC1--ADAMTS2: 100%|██████████| 15/15 [00:01<00:00,  9.65it/s]
Processing WWC1--ADAMTS2: 100%|██████████| 15/15 [00:01<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory