Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/00f6f55e17af48e3608f4727041294/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/27385695e43288cff28ebcd46dc4c9/659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/00f6f55e17af48e3608f4727041294/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bTo-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bTo-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:33:46.755 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:33:46 GMT 2026] MarkDuplicates --INPUT 659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bTo-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bTo-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:33:46 GMT 2026] Executing as ?@nf-5600f6f55e17af48e3608f4727041294-c80a7-95w7z on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:33:46 MarkDuplicates Start of doWork freeMemory: 105828000; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:33:46 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:33:46 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:33:50 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,048,031
INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 3541 as yet unmatched pairs. 1239 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,420,805
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 4915 as yet unmatched pairs. 223 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:3,625,196
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 7223 as yet unmatched pairs. 478 records in RAM.
INFO 2026-06-08 08:33:57 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,014,008
INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 9737 as yet unmatched pairs. 787 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:9,743,994
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 13116 as yet unmatched pairs. 2229 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:11,923,061
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 13595 as yet unmatched pairs. 612 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:15,716,710
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 15634 as yet unmatched pairs. 642 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:17,022,655
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 17382 as yet unmatched pairs. 477 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:20,483,633
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 19429 as yet unmatched pairs. 526 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:21,831,494
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 22540 as yet unmatched pairs. 1683 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:21,872,235
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 24277 as yet unmatched pairs. 1275 records in RAM.
INFO 2026-06-08 08:34:13 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:22,639,017
INFO 2026-06-08 08:34:13 MarkDuplicates Tracking 27463 as yet unmatched pairs. 2463 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:23,019,767
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 27449 as yet unmatched pairs. 584 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:25,813,921
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 29743 as yet unmatched pairs. 1135 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:26,863,666
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 35057 as yet unmatched pairs. 4570 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:28,210,593
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 33512 as yet unmatched pairs. 977 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:31,429,483
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 36906 as yet unmatched pairs. 2330 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:32,229,197
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 37355 as yet unmatched pairs. 722 records in RAM.
INFO 2026-06-08 08:34:28 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:35,190,698
INFO 2026-06-08 08:34:28 MarkDuplicates Tracking 40681 as yet unmatched pairs. 2136 records in RAM.
INFO 2026-06-08 08:34:30 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:36,469,156
INFO 2026-06-08 08:34:30 MarkDuplicates Tracking 41090 as yet unmatched pairs. 488 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:39,484,697
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 43280 as yet unmatched pairs. 691 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:42,696,910
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 45556 as yet unmatched pairs. 1009 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:43,591,240
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 49996 as yet unmatched pairs. 3370 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:45,011,104
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 49046 as yet unmatched pairs. 192 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:51,798,347
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 51187 as yet unmatched pairs. 410 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:58,782,092
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 54538 as yet unmatched pairs. 1705 records in RAM.
INFO 2026-06-08 08:34:43 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:68,194,119
INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 55694 as yet unmatched pairs. 965 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:86,447,506
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 57240 as yet unmatched pairs. 642 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:94,489,802
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 58762 as yet unmatched pairs. 336 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:109,235,376
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 60493 as yet unmatched pairs. 259 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:113,838,040
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 62273 as yet unmatched pairs. 72 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:119,915,341
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 65377 as yet unmatched pairs. 1223 records in RAM.
INFO 2026-06-08 08:34:54 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:143,968,981
INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 65704 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:148,123,889
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 66930 as yet unmatched pairs. 203 records in RAM.
INFO 2026-06-08 08:34:57 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,528
INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 70761 as yet unmatched pairs. 3053 records in RAM.
INFO 2026-06-08 08:34:59 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:150,578,898
INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 72239 as yet unmatched pairs. 2981 records in RAM.
INFO 2026-06-08 08:35:01 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:151,986,099
INFO 2026-06-08 08:35:01 MarkDuplicates Tracking 75107 as yet unmatched pairs. 3892 records in RAM.
INFO 2026-06-08 08:35:03 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:153,816,479
INFO 2026-06-08 08:35:03 MarkDuplicates Tracking 73127 as yet unmatched pairs. 182 records in RAM.
INFO 2026-06-08 08:35:05 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:154,176,134
INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 85134 as yet unmatched pairs. 10360 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:154,977,986
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 77954 as yet unmatched pairs. 1302 records in RAM.
INFO 2026-06-08 08:35:08 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:155,766,363
INFO 2026-06-08 08:35:08 MarkDuplicates Tracking 78741 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 08:35:11 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 2s. Last read position: chr1:156,136,327
INFO 2026-06-08 08:35:11 MarkDuplicates Tracking 85459 as yet unmatched pairs. 4712 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:156,723,378
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 83288 as yet unmatched pairs. 460 records in RAM.
INFO 2026-06-08 08:35:15 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:160,291,832
INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 85687 as yet unmatched pairs. 1051 records in RAM.
INFO 2026-06-08 08:35:17 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:161,506,582
INFO 2026-06-08 08:35:17 MarkDuplicates Tracking 94437 as yet unmatched pairs. 7768 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:165,896,235
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 88807 as yet unmatched pairs. 383 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:171,583,992
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 90587 as yet unmatched pairs. 269 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:180,836,554
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 92376 as yet unmatched pairs. 210 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:183,215,465
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 97184 as yet unmatched pairs. 3010 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:183,240,066
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 101413 as yet unmatched pairs. 5129 records in RAM.
INFO 2026-06-08 08:35:27 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:186,325,822
INFO 2026-06-08 08:35:27 MarkDuplicates Tracking 98346 as yet unmatched pairs. 272 records in RAM.
INFO 2026-06-08 08:35:28 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:200,409,043
INFO 2026-06-08 08:35:28 MarkDuplicates Tracking 100069 as yet unmatched pairs. 316 records in RAM.
INFO 2026-06-08 08:35:30 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:202,158,196
INFO 2026-06-08 08:35:30 MarkDuplicates Tracking 101594 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 08:35:33 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr1:205,524,309
INFO 2026-06-08 08:35:33 MarkDuplicates Tracking 103550 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:35:34 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:208,038,394
INFO 2026-06-08 08:35:34 MarkDuplicates Tracking 105090 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-08 08:35:36 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:209,628,078
INFO 2026-06-08 08:35:36 MarkDuplicates Tracking 116843 as yet unmatched pairs. 9532 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:214,369,564
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 109304 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:35:40 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr1:224,356,942
INFO 2026-06-08 08:35:40 MarkDuplicates Tracking 112452 as yet unmatched pairs. 1357 records in RAM.
INFO 2026-06-08 08:35:41 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:228,148,404
INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 114304 as yet unmatched pairs. 1251 records in RAM.
INFO 2026-06-08 08:35:44 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr1:235,168,528
INFO 2026-06-08 08:35:44 MarkDuplicates Tracking 115405 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:35:46 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:244,863,706
INFO 2026-06-08 08:35:46 MarkDuplicates Tracking 117723 as yet unmatched pairs. 519 records in RAM.
INFO 2026-06-08 08:35:48 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr2:8,778,641
INFO 2026-06-08 08:35:48 MarkDuplicates Tracking 119689 as yet unmatched pairs. 118815 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:15,623,546
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 121680 as yet unmatched pairs. 120782 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,221
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 128425 as yet unmatched pairs. 127518 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:26,191,499
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 125632 as yet unmatched pairs. 124714 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr2:27,653,500
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 127704 as yet unmatched pairs. 126770 records in RAM.
INFO 2026-06-08 08:35:58 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,431,077
INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 129431 as yet unmatched pairs. 128479 records in RAM.
INFO 2026-06-08 08:36:00 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:36:00 MarkDuplicates Tracking 429506 as yet unmatched pairs. 118683 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 997130 as yet unmatched pairs. 100020 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 1010452 as yet unmatched pairs. 99580 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:37,119,960
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 1055184 as yet unmatched pairs. 96894 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:43,225,512
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 1053735 as yet unmatched pairs. 95432 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:47,801,067
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 1050895 as yet unmatched pairs. 92564 records in RAM.
INFO 2026-06-08 08:36:10 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:55,049,840
INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 1051612 as yet unmatched pairs. 93264 records in RAM.
INFO 2026-06-08 08:36:12 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:61,257,314
INFO 2026-06-08 08:36:12 MarkDuplicates Tracking 1047390 as yet unmatched pairs. 89033 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:68,394,111
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 1045320 as yet unmatched pairs. 86940 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:73,228,520
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 1043116 as yet unmatched pairs. 84715 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:74,527,765
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 1042458 as yet unmatched pairs. 84036 records in RAM.
INFO 2026-06-08 08:36:19 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:86,457,002
INFO 2026-06-08 08:36:19 MarkDuplicates Tracking 1039561 as yet unmatched pairs. 81115 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:96,861,438
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 1037656 as yet unmatched pairs. 79192 records in RAM.
INFO 2026-06-08 08:36:23 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:102,028,290
INFO 2026-06-08 08:36:23 MarkDuplicates Tracking 1035667 as yet unmatched pairs. 77188 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:108,767,024
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 1034984 as yet unmatched pairs. 76499 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:111,863,675
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 1033045 as yet unmatched pairs. 74552 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:113,955,652
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 1032203 as yet unmatched pairs. 73689 records in RAM.
INFO 2026-06-08 08:36:30 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:130,182,285
INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 1030190 as yet unmatched pairs. 71652 records in RAM.
INFO 2026-06-08 08:36:32 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:148,468,319
INFO 2026-06-08 08:36:32 MarkDuplicates Tracking 1027806 as yet unmatched pairs. 69248 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:160,137,446
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 1027899 as yet unmatched pairs. 69314 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:171,692,777
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 1024453 as yet unmatched pairs. 65844 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:173,955,999
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 1023055 as yet unmatched pairs. 64438 records in RAM.
INFO 2026-06-08 08:36:39 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:178,624,588
INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 1020681 as yet unmatched pairs. 62048 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:186,665,190
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 1020251 as yet unmatched pairs. 61605 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:188,995,076
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 1025162 as yet unmatched pairs. 66503 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:189,006,937
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 1019403 as yet unmatched pairs. 60736 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:189,062,877
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 1013762 as yet unmatched pairs. 55080 records in RAM.
INFO 2026-06-08 08:36:48 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:197,396,220
INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 1011123 as yet unmatched pairs. 52431 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:202,556,251
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 1008633 as yet unmatched pairs. 49927 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,424
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 1030807 as yet unmatched pairs. 72072 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,362,061
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 1048847 as yet unmatched pairs. 90106 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 2s. Last read position: chr2:215,370,341
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 1064460 as yet unmatched pairs. 105711 records in RAM.
INFO 2026-06-08 08:36:58 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,124
INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 1066505 as yet unmatched pairs. 107752 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,366
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 1040678 as yet unmatched pairs. 81923 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,384
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 1035898 as yet unmatched pairs. 77143 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:215,376,674
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 1022263 as yet unmatched pairs. 63503 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:215,380,828
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 1049052 as yet unmatched pairs. 90290 records in RAM.
INFO 2026-06-08 08:37:08 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:215,383,421
INFO 2026-06-08 08:37:08 MarkDuplicates Tracking 1011666 as yet unmatched pairs. 52899 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,792
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 1017869 as yet unmatched pairs. 59100 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,745
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 1018497 as yet unmatched pairs. 59726 records in RAM.
INFO 2026-06-08 08:37:13 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,173
INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 1062668 as yet unmatched pairs. 103892 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,467
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 1028142 as yet unmatched pairs. 69357 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,158
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 1033088 as yet unmatched pairs. 74291 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,410
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 1020367 as yet unmatched pairs. 61570 records in RAM.
INFO 2026-06-08 08:37:21 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:215,410,078
INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 1014898 as yet unmatched pairs. 56100 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,772
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 1001382 as yet unmatched pairs. 42584 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:215,424,267
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 1014405 as yet unmatched pairs. 55607 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr2:215,430,734
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 1004447 as yet unmatched pairs. 45644 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr2:215,434,778
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 1007182 as yet unmatched pairs. 48376 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:218,164,354
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 971743 as yet unmatched pairs. 12923 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr2:219,250,883
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 971677 as yet unmatched pairs. 12847 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr2:224,001,901
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 968226 as yet unmatched pairs. 9371 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:231,460,765
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 966345 as yet unmatched pairs. 7472 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr2:237,340,573
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 966554 as yet unmatched pairs. 7668 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr2:237,749,252
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 962674 as yet unmatched pairs. 3773 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr2:241,242,638
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 961545 as yet unmatched pairs. 2624 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr3:9,791,339
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 958138 as yet unmatched pairs. 54457 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:15,436,457
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 956173 as yet unmatched pairs. 52490 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:37,275,563
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 954451 as yet unmatched pairs. 50748 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr3:43,055,488
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 952303 as yet unmatched pairs. 48596 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:47,916,798
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 951350 as yet unmatched pairs. 47623 records in RAM.
INFO 2026-06-08 08:37:52 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr3:48,574,676
INFO 2026-06-08 08:37:52 MarkDuplicates Tracking 952409 as yet unmatched pairs. 48674 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr3:48,592,144
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 953003 as yet unmatched pairs. 49254 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:49,358,117
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 943616 as yet unmatched pairs. 39858 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:51,988,555
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 941786 as yet unmatched pairs. 38016 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:52,525,210
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 939989 as yet unmatched pairs. 36212 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:58,168,532
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 938300 as yet unmatched pairs. 34510 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:96,617,432
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 935939 as yet unmatched pairs. 32124 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:100,748,176
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 936710 as yet unmatched pairs. 32882 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:108,167,792
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 933138 as yet unmatched pairs. 29288 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:119,863,537
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 930903 as yet unmatched pairs. 27040 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:123,528,458
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 929454 as yet unmatched pairs. 25570 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:127,016,647
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 927497 as yet unmatched pairs. 23600 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:128,910,098
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 924845 as yet unmatched pairs. 20921 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:131,471,204
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 923252 as yet unmatched pairs. 19317 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:139,517,552
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 927001 as yet unmatched pairs. 23056 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr3:149,162,715
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 919171 as yet unmatched pairs. 15193 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr3:155,987,469
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 917211 as yet unmatched pairs. 13213 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr3:170,128,740
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 915558 as yet unmatched pairs. 11555 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr3:179,604,871
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 914291 as yet unmatched pairs. 10246 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr3:184,183,488
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 915370 as yet unmatched pairs. 11311 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr3:184,327,880
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 910934 as yet unmatched pairs. 6868 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr3:188,609,520
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 908459 as yet unmatched pairs. 4375 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:194,658,957
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 906398 as yet unmatched pairs. 2280 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr3:197,954,083
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 904461 as yet unmatched pairs. 336 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr4:1,805,569
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 902337 as yet unmatched pairs. 27645 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:3,211,928
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 900179 as yet unmatched pairs. 25474 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:7,800,590
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 899311 as yet unmatched pairs. 24594 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr4:15,935,933
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 899144 as yet unmatched pairs. 24421 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr4:37,686,224
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 894141 as yet unmatched pairs. 19404 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:41,990,751
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 892635 as yet unmatched pairs. 17879 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:56,911,297
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 890571 as yet unmatched pairs. 15796 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:74,038,571
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 888529 as yet unmatched pairs. 13743 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:81,442,340
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 887064 as yet unmatched pairs. 12265 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr4:87,493,909
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 885550 as yet unmatched pairs. 10739 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 2s. Last read position: chr4:102,797,338
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 887272 as yet unmatched pairs. 12448 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr4:118,815,461
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 881700 as yet unmatched pairs. 6861 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr4:139,359,808
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 880099 as yet unmatched pairs. 5239 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 2s. Last read position: chr4:153,781,549
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 878326 as yet unmatched pairs. 3449 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr4:184,657,168
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 875748 as yet unmatched pairs. 845 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr5:1,501,530
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 874338 as yet unmatched pairs. 44742 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr5:14,297,071
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 873651 as yet unmatched pairs. 44044 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr5:14,498,095
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 870687 as yet unmatched pairs. 41066 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr5:33,162,213
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 867878 as yet unmatched pairs. 38245 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:39,376,900
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 866524 as yet unmatched pairs. 36876 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:55,327,738
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 864278 as yet unmatched pairs. 34620 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:72,193,995
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 862747 as yet unmatched pairs. 33074 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:80,202,904
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 861168 as yet unmatched pairs. 31478 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:95,484,828
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 859290 as yet unmatched pairs. 29592 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:113,143,189
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 857378 as yet unmatched pairs. 27673 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:132,927,173
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 856072 as yet unmatched pairs. 26347 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:136,060,915
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 860439 as yet unmatched pairs. 30701 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:140,360,832
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 851572 as yet unmatched pairs. 21807 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:141,956,422
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 849743 as yet unmatched pairs. 19969 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:150,125,530
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 848590 as yet unmatched pairs. 18801 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,608
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 872246 as yet unmatched pairs. 42449 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,286
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 879524 as yet unmatched pairs. 49720 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:150,649,988
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 843316 as yet unmatched pairs. 13499 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr5:151,671,593
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 841952 as yet unmatched pairs. 12120 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:168,218,412
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 838157 as yet unmatched pairs. 8319 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr5:172,082,411
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 836295 as yet unmatched pairs. 6452 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:177,458,700
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 834570 as yet unmatched pairs. 4718 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr5:179,774,392
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 832522 as yet unmatched pairs. 2665 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:181,239,525
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 831326 as yet unmatched pairs. 1444 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 2s. Last read position: chr6:6,305,495
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 829058 as yet unmatched pairs. 57258 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:7,583,965
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 827032 as yet unmatched pairs. 55213 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:17,665,324
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 824529 as yet unmatched pairs. 52702 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:26,197,118
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 822603 as yet unmatched pairs. 50757 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:27,893,622
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 821067 as yet unmatched pairs. 49217 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:30,492,424
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 819767 as yet unmatched pairs. 47907 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:30,925,607
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 817076 as yet unmatched pairs. 45205 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 2s. Last read position: chr6:31,629,305
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 815386 as yet unmatched pairs. 43500 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,023
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 813681 as yet unmatched pairs. 41795 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,620
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 815809 as yet unmatched pairs. 43922 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:32,024,591
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 811494 as yet unmatched pairs. 39603 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:32,841,651
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 809288 as yet unmatched pairs. 37391 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:33,313,292
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 809301 as yet unmatched pairs. 37401 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:34,762,617
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 806308 as yet unmatched pairs. 34396 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:38,345,077
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 803194 as yet unmatched pairs. 31270 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:43,143,475
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 802442 as yet unmatched pairs. 30513 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr6:44,250,101
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 799772 as yet unmatched pairs. 27830 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:56,498,000
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 797568 as yet unmatched pairs. 25588 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:56,634,919
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 797398 as yet unmatched pairs. 25409 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:75,113,636
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 794034 as yet unmatched pairs. 22033 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:85,614,984
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 791975 as yet unmatched pairs. 19967 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:106,512,533
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 790263 as yet unmatched pairs. 18245 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:112,142,176
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 788395 as yet unmatched pairs. 16353 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:125,058,057
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 786207 as yet unmatched pairs. 14138 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:137,206,195
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 785868 as yet unmatched pairs. 13784 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:143,504,199
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 782556 as yet unmatched pairs. 10461 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:151,349,671
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 781615 as yet unmatched pairs. 9513 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:158,560,138
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 778457 as yet unmatched pairs. 6349 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:159,692,401
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 781677 as yet unmatched pairs. 9562 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:163,566,790
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 777170 as yet unmatched pairs. 5047 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr6:170,317,369
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 772776 as yet unmatched pairs. 639 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr7:2,355,315
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 771281 as yet unmatched pairs. 62270 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:5,370,788
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 768521 as yet unmatched pairs. 59499 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,109
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 796726 as yet unmatched pairs. 87696 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,257
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 787132 as yet unmatched pairs. 78098 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:5,900,471
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 761792 as yet unmatched pairs. 52750 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:17,339,654
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 761403 as yet unmatched pairs. 52354 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:26,196,846
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 760168 as yet unmatched pairs. 51112 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:33,146,335
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 756179 as yet unmatched pairs. 47113 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:43,792,713
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 754681 as yet unmatched pairs. 45600 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:44,697,755
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 752826 as yet unmatched pairs. 43738 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:54,752,361
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 770310 as yet unmatched pairs. 61211 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 2s. Last read position: chr7:55,152,588
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 755905 as yet unmatched pairs. 46785 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:55,163,753
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 758186 as yet unmatched pairs. 49057 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 2s. Last read position: chr7:55,198,810
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 752437 as yet unmatched pairs. 43302 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:55,553,816
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 742590 as yet unmatched pairs. 33454 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,218
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 741070 as yet unmatched pairs. 31912 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:75,441,091
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 740060 as yet unmatched pairs. 30889 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,823
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 750096 as yet unmatched pairs. 40922 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr7:87,174,658
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 735880 as yet unmatched pairs. 26693 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 61s. Last read position: chr7:94,404,562
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 745663 as yet unmatched pairs. 36468 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:94,420,546
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 736021 as yet unmatched pairs. 26804 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:96,277,298
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 729985 as yet unmatched pairs. 20762 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,155,328
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 728040 as yet unmatched pairs. 18807 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr7:101,130,518
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 728658 as yet unmatched pairs. 19422 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr7:102,567,062
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 724710 as yet unmatched pairs. 15470 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr7:107,758,367
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 722645 as yet unmatched pairs. 13400 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr7:116,731,770
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 721894 as yet unmatched pairs. 12636 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr7:127,721,345
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 721803 as yet unmatched pairs. 12539 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr7:131,437,884
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 717230 as yet unmatched pairs. 7953 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr7:139,417,618
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 715398 as yet unmatched pairs. 6094 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr7:143,876,264
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 713560 as yet unmatched pairs. 4253 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr7:150,796,493
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 711875 as yet unmatched pairs. 2558 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr7:157,225,520
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 710216 as yet unmatched pairs. 890 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 2s. Last read position: chr8:11,847,721
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 716123 as yet unmatched pairs. 51452 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 2s. Last read position: chr8:22,249,141
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 706156 as yet unmatched pairs. 41468 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr8:27,442,926
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 703991 as yet unmatched pairs. 39297 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:38,415,915
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 702647 as yet unmatched pairs. 37942 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,421
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 702273 as yet unmatched pairs. 37563 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:54,022,126
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 698095 as yet unmatched pairs. 33383 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:65,707,965
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 696197 as yet unmatched pairs. 31481 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:74,321,015
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 694325 as yet unmatched pairs. 29598 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:94,841,544
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 692871 as yet unmatched pairs. 28137 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr8:100,706,968
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 694607 as yet unmatched pairs. 29865 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr8:102,272,538
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 689563 as yet unmatched pairs. 24814 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr8:115,619,889
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 686947 as yet unmatched pairs. 22190 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 2s. Last read position: chr8:123,810,238
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 685538 as yet unmatched pairs. 20766 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr8:131,977,047
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 683209 as yet unmatched pairs. 18426 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr8:133,262,085
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 685071 as yet unmatched pairs. 20280 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr8:143,269,363
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 678846 as yet unmatched pairs. 14036 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,975
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 676708 as yet unmatched pairs. 11893 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr8:143,917,784
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 681146 as yet unmatched pairs. 16325 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,541
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 674060 as yet unmatched pairs. 9234 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,930,051
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 675218 as yet unmatched pairs. 10381 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr8:144,106,885
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 667877 as yet unmatched pairs. 3039 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr8:144,791,376
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 667074 as yet unmatched pairs. 2230 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:19,116,534
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 664224 as yet unmatched pairs. 38753 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:33,463,044
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 661461 as yet unmatched pairs. 35978 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:35,607,598
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 660470 as yet unmatched pairs. 34975 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:35,711,380
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 660177 as yet unmatched pairs. 34681 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:36,197,553
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 656497 as yet unmatched pairs. 31000 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:69,174,345
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 654268 as yet unmatched pairs. 28753 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:83,679,854
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 652938 as yet unmatched pairs. 27402 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 2s. Last read position: chr9:92,242,283
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 651239 as yet unmatched pairs. 25690 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 2s. Last read position: chr9:98,200,294
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 648816 as yet unmatched pairs. 23260 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr9:105,365,522
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 647219 as yet unmatched pairs. 21654 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:112,262,476
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 645543 as yet unmatched pairs. 19953 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr9:115,031,571
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 645283 as yet unmatched pairs. 19688 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr9:115,086,478
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 648453 as yet unmatched pairs. 22849 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr9:121,327,381
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 639764 as yet unmatched pairs. 14156 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr9:125,240,868
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 638676 as yet unmatched pairs. 13059 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr9:128,492,431
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 634994 as yet unmatched pairs. 9360 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr9:130,880,502
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 633921 as yet unmatched pairs. 8275 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr9:133,992,241
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 631197 as yet unmatched pairs. 5521 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr9:134,818,880
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 630186 as yet unmatched pairs. 4494 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr9:136,941,306
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 627312 as yet unmatched pairs. 1613 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr10:3,157,504
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 625332 as yet unmatched pairs. 39901 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:6,215,262
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 624283 as yet unmatched pairs. 38848 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 2s. Last read position: chr10:17,229,851
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 622534 as yet unmatched pairs. 37088 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr10:24,585,848
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 620162 as yet unmatched pairs. 34708 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr10:32,017,299
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 620188 as yet unmatched pairs. 34728 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr10:32,920,304
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 622516 as yet unmatched pairs. 37054 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr10:43,386,975
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 613973 as yet unmatched pairs. 28506 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr10:46,816,513
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 612332 as yet unmatched pairs. 26857 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr10:63,183,539
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 610582 as yet unmatched pairs. 25098 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr10:70,868,383
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 609306 as yet unmatched pairs. 23810 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr10:73,789,081
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 606792 as yet unmatched pairs. 21288 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 2s. Last read position: chr10:77,999,991
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 604681 as yet unmatched pairs. 19163 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr10:87,792,746
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 603140 as yet unmatched pairs. 17600 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr10:93,431,516
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 601816 as yet unmatched pairs. 16265 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 2s. Last read position: chr10:97,484,109
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 599178 as yet unmatched pairs. 13613 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr10:102,140,796
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 597349 as yet unmatched pairs. 11773 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr10:103,801,340
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 595791 as yet unmatched pairs. 10211 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:104,055,976
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 598457 as yet unmatched pairs. 12868 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr10:110,890,596
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 591653 as yet unmatched pairs. 6060 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 2s. Last read position: chr10:119,582,542
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 590272 as yet unmatched pairs. 4671 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 2s. Last read position: chr10:126,017,281
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 587637 as yet unmatched pairs. 2019 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr11:212,638
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 585827 as yet unmatched pairs. 78670 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:320,618
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 597842 as yet unmatched pairs. 90685 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:810,261
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 582835 as yet unmatched pairs. 75672 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:1,761,323
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 590085 as yet unmatched pairs. 82916 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:6,211,815
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 577623 as yet unmatched pairs. 70452 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:9,203,673
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 575932 as yet unmatched pairs. 68754 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:10,803,070
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 577259 as yet unmatched pairs. 70076 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:16,754,898
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 572213 as yet unmatched pairs. 65020 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:31,632,216
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 569702 as yet unmatched pairs. 62508 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:35,176,625
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 574200 as yet unmatched pairs. 66995 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr11:44,197,950
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 566722 as yet unmatched pairs. 59509 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr11:47,378,326
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 564297 as yet unmatched pairs. 57070 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr11:57,528,705
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 562178 as yet unmatched pairs. 54946 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:59,699,753
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 560191 as yet unmatched pairs. 52956 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:61,523,136
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 558399 as yet unmatched pairs. 51155 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,496
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 559640 as yet unmatched pairs. 52395 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:62,524,538
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 559390 as yet unmatched pairs. 52140 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,375
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 556945 as yet unmatched pairs. 49691 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:62,571,002
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 551935 as yet unmatched pairs. 44674 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:62,881,378
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 552094 as yet unmatched pairs. 44832 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:64,245,257
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 550213 as yet unmatched pairs. 42946 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:64,860,287
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 545695 as yet unmatched pairs. 38423 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:65,423,913
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 542829 as yet unmatched pairs. 35553 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr11:65,635,542
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 540906 as yet unmatched pairs. 33593 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:65,891,272
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 538943 as yet unmatched pairs. 31625 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 2s. Last read position: chr11:66,438,701
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 536411 as yet unmatched pairs. 29086 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr11:67,400,819
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 535372 as yet unmatched pairs. 28038 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr11:68,262,810
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 533185 as yet unmatched pairs. 25843 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:70,182,551
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 530936 as yet unmatched pairs. 23584 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:72,232,247
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 528496 as yet unmatched pairs. 21142 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:74,949,341
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 527377 as yet unmatched pairs. 20019 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:77,016,763
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 524577 as yet unmatched pairs. 17206 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr11:86,807,834
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 523692 as yet unmatched pairs. 16318 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr11:95,178,734
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 520968 as yet unmatched pairs. 13588 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:102,779,620
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 522431 as yet unmatched pairs. 15048 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr11:114,062,975
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 516945 as yet unmatched pairs. 9561 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 2s. Last read position: chr11:118,572,541
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 517009 as yet unmatched pairs. 9622 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr11:119,312,052
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 513276 as yet unmatched pairs. 5883 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:123,058,439
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 511745 as yet unmatched pairs. 4344 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr11:128,969,130
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 509083 as yet unmatched pairs. 1673 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr12:753,795
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 508004 as yet unmatched pairs. 67955 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:4,659,056
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 505700 as yet unmatched pairs. 65647 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:6,536,860
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 506521 as yet unmatched pairs. 66462 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:6,869,113
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 503287 as yet unmatched pairs. 63224 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:7,150,980
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 499837 as yet unmatched pairs. 59773 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:8,941,890
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 498173 as yet unmatched pairs. 58108 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr12:12,987,277
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 496002 as yet unmatched pairs. 55918 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:26,922,644
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 493977 as yet unmatched pairs. 53882 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:42,398,931
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 492504 as yet unmatched pairs. 52405 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr12:47,890,808
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 490100 as yet unmatched pairs. 49990 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,501
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 489496 as yet unmatched pairs. 49385 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:49,484,639
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 487420 as yet unmatched pairs. 47308 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr12:51,240,351
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 486372 as yet unmatched pairs. 46254 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:52,473,638
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 485149 as yet unmatched pairs. 45029 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:52,491,632
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 492352 as yet unmatched pairs. 52231 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:52,515,809
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 493636 as yet unmatched pairs. 53510 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:52,519,919
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 491174 as yet unmatched pairs. 51047 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,544
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 478146 as yet unmatched pairs. 38012 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:54,396,284
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 475668 as yet unmatched pairs. 35531 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:55,819,087
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 473881 as yet unmatched pairs. 33744 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:56,206,592
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 470854 as yet unmatched pairs. 30714 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr12:57,091,154
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 469422 as yet unmatched pairs. 29275 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr12:57,178,525
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 468386 as yet unmatched pairs. 28235 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr12:57,525,500
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 464951 as yet unmatched pairs. 24795 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr12:64,729,027
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 464127 as yet unmatched pairs. 23969 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr12:71,782,585
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 461811 as yet unmatched pairs. 21649 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 2s. Last read position: chr12:91,104,226
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 460736 as yet unmatched pairs. 20570 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:96,951,456
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 457761 as yet unmatched pairs. 17585 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr12:103,946,884
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 457849 as yet unmatched pairs. 17666 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:108,623,249
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 454293 as yet unmatched pairs. 14107 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr12:111,362,800
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 452031 as yet unmatched pairs. 11844 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr12:113,387,005
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 450316 as yet unmatched pairs. 10127 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr12:120,215,214
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 448910 as yet unmatched pairs. 8699 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr12:122,232,408
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 446014 as yet unmatched pairs. 5792 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr12:124,336,995
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 445019 as yet unmatched pairs. 4791 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr12:131,797,298
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 442283 as yet unmatched pairs. 2053 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr13:19,993,135
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 441339 as yet unmatched pairs. 18366 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr13:23,336,503
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 438612 as yet unmatched pairs. 15637 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr13:37,563,312
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 440110 as yet unmatched pairs. 17128 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 2s. Last read position: chr13:45,337,256
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 436269 as yet unmatched pairs. 13282 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr13:59,810,899
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 433031 as yet unmatched pairs. 10035 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr13:97,992,989
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 431382 as yet unmatched pairs. 8374 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr13:110,161,274
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 430731 as yet unmatched pairs. 7711 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr13:110,424,735
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 427609 as yet unmatched pairs. 4580 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr13:111,205,362
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 424963 as yet unmatched pairs. 1921 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr14:20,801,576
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 423552 as yet unmatched pairs. 37887 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr14:22,843,354
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 422946 as yet unmatched pairs. 37280 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr14:24,005,886
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 419023 as yet unmatched pairs. 33350 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr14:31,128,691
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 417079 as yet unmatched pairs. 31400 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr14:39,150,248
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 415246 as yet unmatched pairs. 29565 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 2s. Last read position: chr14:51,715,399
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 413548 as yet unmatched pairs. 27845 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr14:55,667,256
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 412989 as yet unmatched pairs. 27282 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr14:63,422,034
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 410313 as yet unmatched pairs. 24604 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr14:67,772,120
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 407598 as yet unmatched pairs. 21886 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr14:69,442,202
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 405794 as yet unmatched pairs. 20079 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr14:74,486,394
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 404279 as yet unmatched pairs. 18553 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr14:75,906,605
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 401834 as yet unmatched pairs. 16105 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr14:91,273,074
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 399973 as yet unmatched pairs. 14240 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr14:95,103,683
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 398158 as yet unmatched pairs. 12420 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr14:102,017,156
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 397141 as yet unmatched pairs. 11391 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr14:103,559,858
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 394433 as yet unmatched pairs. 8680 records in RAM.
INFO 2026-06-08 08:47:56 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr14:104,941,418
INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 393164 as yet unmatched pairs. 7409 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr14:104,946,014
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 397079 as yet unmatched pairs. 11320 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr14:104,951,102
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 392650 as yet unmatched pairs. 6887 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr14:105,479,582
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 387639 as yet unmatched pairs. 1872 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr15:22,914,812
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 385992 as yet unmatched pairs. 25059 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr15:39,581,183
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 387669 as yet unmatched pairs. 26728 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr15:39,591,190
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 382966 as yet unmatched pairs. 22025 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr15:41,522,176
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 380036 as yet unmatched pairs. 19091 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr15:43,792,985
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 384407 as yet unmatched pairs. 23462 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr15:50,481,986
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 376327 as yet unmatched pairs. 15378 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr15:59,224,749
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 374502 as yet unmatched pairs. 13545 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr15:64,160,126
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 375595 as yet unmatched pairs. 14633 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr15:71,165,117
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 370544 as yet unmatched pairs. 9571 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 2s. Last read position: chr15:74,035,631
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 369219 as yet unmatched pairs. 8244 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr15:77,986,580
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 366378 as yet unmatched pairs. 5398 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr15:85,579,912
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 364812 as yet unmatched pairs. 3824 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr15:90,486,030
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 363113 as yet unmatched pairs. 2114 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 2s. Last read position: chr16:88,733
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 361044 as yet unmatched pairs. 50041 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:1,351,429
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 358826 as yet unmatched pairs. 47821 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:2,103,528
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 356359 as yet unmatched pairs. 45351 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,381
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 355047 as yet unmatched pairs. 44033 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:3,745,302
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 352214 as yet unmatched pairs. 41199 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:11,123,858
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 350193 as yet unmatched pairs. 39171 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:14,926,707
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 348514 as yet unmatched pairs. 37489 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:16,321,023
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 347331 as yet unmatched pairs. 36306 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:18,783,055
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 349673 as yet unmatched pairs. 38648 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:21,599,759
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 345768 as yet unmatched pairs. 34742 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,015
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 344388 as yet unmatched pairs. 33362 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr16:28,491,723
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 342544 as yet unmatched pairs. 31512 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:29,500,105
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 341796 as yet unmatched pairs. 30763 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,014
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 341640 as yet unmatched pairs. 30600 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr16:30,720,919
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 338010 as yet unmatched pairs. 26969 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr16:31,189,782
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 336232 as yet unmatched pairs. 25189 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:50,293,249
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 333852 as yet unmatched pairs. 22808 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr16:56,474,873
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 332169 as yet unmatched pairs. 21114 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:56,609,301
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 334388 as yet unmatched pairs. 23330 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:57,661,839
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 327721 as yet unmatched pairs. 16661 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:67,199,994
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 325252 as yet unmatched pairs. 14190 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 2s. Last read position: chr16:68,679,903
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 326713 as yet unmatched pairs. 15645 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:70,251,075
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 321747 as yet unmatched pairs. 10678 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr16:74,470,004
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 320414 as yet unmatched pairs. 9337 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr16:83,808,057
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 319709 as yet unmatched pairs. 8623 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:87,841,090
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 317504 as yet unmatched pairs. 6410 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr16:88,807,333
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 313340 as yet unmatched pairs. 2241 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr16:89,954,312
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 312013 as yet unmatched pairs. 912 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 2s. Last read position: chr17:1,725,079
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 309609 as yet unmatched pairs. 114799 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:4,884,447
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 307588 as yet unmatched pairs. 112775 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:7,244,110
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 305625 as yet unmatched pairs. 110811 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr17:7,578,355
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 303667 as yet unmatched pairs. 108852 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:8,174,193
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 301621 as yet unmatched pairs. 106805 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr17:16,382,491
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 303745 as yet unmatched pairs. 108925 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:18,254,182
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 298667 as yet unmatched pairs. 103847 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr17:27,642,306
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 296936 as yet unmatched pairs. 102113 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 2s. Last read position: chr17:29,118,117
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 294632 as yet unmatched pairs. 99803 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:31,940,461
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 293224 as yet unmatched pairs. 98392 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr17:36,071,071
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 293219 as yet unmatched pairs. 98384 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,451
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 293956 as yet unmatched pairs. 99121 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr17:40,126,247
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 286742 as yet unmatched pairs. 91906 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr17:41,516,823
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 296322 as yet unmatched pairs. 101485 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr17:41,583,658
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 293859 as yet unmatched pairs. 99019 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr17:41,612,240
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 283698 as yet unmatched pairs. 88855 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr17:41,622,433
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 288693 as yet unmatched pairs. 93849 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr17:41,819,530
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 276490 as yet unmatched pairs. 81645 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr17:42,712,288
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 274155 as yet unmatched pairs. 79310 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr17:44,351,665
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 273587 as yet unmatched pairs. 78741 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 130s. Last read position: chr17:47,697,131
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 270278 as yet unmatched pairs. 75432 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,077,020
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 270582 as yet unmatched pairs. 75733 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,778
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 278903 as yet unmatched pairs. 84050 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,490
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 280438 as yet unmatched pairs. 85585 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 323219 as yet unmatched pairs. 128364 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,878
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 328274 as yet unmatched pairs. 133419 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,107
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 353215 as yet unmatched pairs. 158358 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,908
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 322467 as yet unmatched pairs. 127609 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,398
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 293239 as yet unmatched pairs. 98381 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,675
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 351383 as yet unmatched pairs. 156522 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,056
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 349727 as yet unmatched pairs. 154866 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,883
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 285011 as yet unmatched pairs. 90144 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,954
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 307119 as yet unmatched pairs. 112250 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,832
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 310976 as yet unmatched pairs. 116105 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,997
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 311155 as yet unmatched pairs. 116284 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,376
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 322153 as yet unmatched pairs. 127282 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,755
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 309986 as yet unmatched pairs. 115115 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,301
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 295834 as yet unmatched pairs. 100962 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,927
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 277851 as yet unmatched pairs. 82977 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,313
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 347189 as yet unmatched pairs. 152314 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,659
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 335500 as yet unmatched pairs. 140617 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,755
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 301086 as yet unmatched pairs. 106201 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,259
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 254895 as yet unmatched pairs. 60008 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,781
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 243838 as yet unmatched pairs. 48949 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,555,533
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 221684 as yet unmatched pairs. 26795 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:59,647,449
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 224224 as yet unmatched pairs. 29330 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr17:59,735,359
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 218157 as yet unmatched pairs. 23261 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr17:63,792,505
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 216470 as yet unmatched pairs. 21569 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr17:67,991,971
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 214014 as yet unmatched pairs. 19109 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr17:74,209,236
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 212039 as yet unmatched pairs. 17130 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 2s. Last read position: chr17:75,731,349
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 211021 as yet unmatched pairs. 16109 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr17:75,778,672
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 220149 as yet unmatched pairs. 25234 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr17:76,736,799
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 206538 as yet unmatched pairs. 11621 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr17:78,873,877
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 204292 as yet unmatched pairs. 9374 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 2s. Last read position: chr17:80,380,937
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 201663 as yet unmatched pairs. 6744 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr17:81,672,091
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 199538 as yet unmatched pairs. 4619 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 2s. Last read position: chr17:81,923,166
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 197371 as yet unmatched pairs. 2451 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 2s. Last read position: chr17:82,926,454
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 195274 as yet unmatched pairs. 350 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr18:7,023,208
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 193870 as yet unmatched pairs. 13597 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr18:12,325,287
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 196260 as yet unmatched pairs. 15986 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr18:23,873,065
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 193556 as yet unmatched pairs. 13274 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr18:23,931,097
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 188197 as yet unmatched pairs. 7915 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr18:31,022,367
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 185486 as yet unmatched pairs. 5202 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr18:41,995,895
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 183650 as yet unmatched pairs. 3364 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 2s. Last read position: chr18:62,187,420
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 181764 as yet unmatched pairs. 1474 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 2s. Last read position: chr19:581,348
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 181124 as yet unmatched pairs. 75813 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:1,043,730
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 177483 as yet unmatched pairs. 72170 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:1,440,108
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 182450 as yet unmatched pairs. 77135 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:2,114,259
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 173172 as yet unmatched pairs. 67853 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:3,366,647
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 170828 as yet unmatched pairs. 65508 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:4,516,667
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 168564 as yet unmatched pairs. 63244 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:5,789,642
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 166445 as yet unmatched pairs. 61125 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:7,533,598
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 164320 as yet unmatched pairs. 59000 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:8,403,487
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 162206 as yet unmatched pairs. 56885 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr19:10,284,610
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 160655 as yet unmatched pairs. 55334 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:11,023,608
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 157959 as yet unmatched pairs. 52638 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr19:12,675,815
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 156749 as yet unmatched pairs. 51428 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr19:13,116,193
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 153930 as yet unmatched pairs. 48608 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 2s. Last read position: chr19:14,480,677
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 152530 as yet unmatched pairs. 47208 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:15,160,965
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 150086 as yet unmatched pairs. 44757 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 2s. Last read position: chr19:15,272,916
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 149248 as yet unmatched pairs. 43917 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:17,197,818
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 146313 as yet unmatched pairs. 40982 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:17,942,732
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 144104 as yet unmatched pairs. 38772 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:18,575,085
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 142048 as yet unmatched pairs. 36714 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr19:19,630,270
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 139303 as yet unmatched pairs. 33969 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr19:35,023,514
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 137526 as yet unmatched pairs. 32191 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:35,746,509
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 135741 as yet unmatched pairs. 30406 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr19:38,624,129
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 134039 as yet unmatched pairs. 28703 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:39,407,884
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 134074 as yet unmatched pairs. 28737 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:40,238,914
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 130280 as yet unmatched pairs. 24943 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 2s. Last read position: chr19:41,302,935
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 128035 as yet unmatched pairs. 22696 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr19:42,273,735
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 126039 as yet unmatched pairs. 20700 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:44,477,043
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 123103 as yet unmatched pairs. 17761 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr19:45,472,904
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 121350 as yet unmatched pairs. 16008 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr19:47,169,859
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 119171 as yet unmatched pairs. 13825 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:48,873,424
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 118292 as yet unmatched pairs. 12946 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr19:49,490,249
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 121580 as yet unmatched pairs. 16232 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr19:49,854,980
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 113198 as yet unmatched pairs. 7848 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr19:53,069,328
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 110739 as yet unmatched pairs. 5389 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr19:55,091,889
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 108979 as yet unmatched pairs. 3629 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:57,435,485
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 106678 as yet unmatched pairs. 1327 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 2s. Last read position: chr20:1,392,833
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 107323 as yet unmatched pairs. 29509 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr20:4,699,370
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 105761 as yet unmatched pairs. 27945 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 2s. Last read position: chr20:17,600,950
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 102455 as yet unmatched pairs. 24639 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr20:23,085,275
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 99748 as yet unmatched pairs. 21932 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr20:33,640,379
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 96641 as yet unmatched pairs. 18824 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr20:35,704,405
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 95212 as yet unmatched pairs. 17393 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 2s. Last read position: chr20:38,521,546
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 93005 as yet unmatched pairs. 15181 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr20:45,327,375
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 103584 as yet unmatched pairs. 25759 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr20:45,907,887
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 95203 as yet unmatched pairs. 17376 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr20:49,224,978
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 87148 as yet unmatched pairs. 9321 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr20:56,399,240
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 84980 as yet unmatched pairs. 7152 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr20:59,006,415
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 85363 as yet unmatched pairs. 7534 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,420
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 80882 as yet unmatched pairs. 3052 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr20:63,889,983
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 78669 as yet unmatched pairs. 839 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,910
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 77084 as yet unmatched pairs. 15400 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr21:17,565,611
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 76421 as yet unmatched pairs. 14733 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr21:29,006,533
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 74170 as yet unmatched pairs. 12479 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr21:33,903,987
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 72462 as yet unmatched pairs. 10771 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr21:39,178,576
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 70607 as yet unmatched pairs. 8915 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr21:43,971,384
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 68263 as yet unmatched pairs. 6568 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr21:45,510,076
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 67728 as yet unmatched pairs. 6033 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr21:46,112,221
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 65750 as yet unmatched pairs. 4055 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr21:46,549,817
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 62172 as yet unmatched pairs. 476 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 2s. Last read position: chr22:20,314,683
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 60380 as yet unmatched pairs. 29275 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 2s. Last read position: chr22:23,273,081
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 59852 as yet unmatched pairs. 28746 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr22:26,488,058
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 55544 as yet unmatched pairs. 24438 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr22:29,341,628
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 53692 as yet unmatched pairs. 22585 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 2s. Last read position: chr22:31,488,648
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 51501 as yet unmatched pairs. 20394 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr22:36,285,658
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 53205 as yet unmatched pairs. 22098 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chr22:36,320,219
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 48819 as yet unmatched pairs. 17712 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr22:37,678,627
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 49350 as yet unmatched pairs. 18243 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr22:38,721,701
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 43626 as yet unmatched pairs. 12519 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chr22:40,850,840
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 42630 as yet unmatched pairs. 11523 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr22:42,214,348
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 39564 as yet unmatched pairs. 8456 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr22:45,931,157
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 37556 as yet unmatched pairs. 6447 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chr22:50,198,156
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 35280 as yet unmatched pairs. 4171 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chr22:50,525,783
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 36301 as yet unmatched pairs. 5192 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chrX:3,311,571
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 30711 as yet unmatched pairs. 28927 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chrX:18,893,558
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 28273 as yet unmatched pairs. 26485 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chrX:40,062,264
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 26486 as yet unmatched pairs. 24697 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chrX:47,180,473
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 24545 as yet unmatched pairs. 22756 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chrX:47,586,641
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 22514 as yet unmatched pairs. 20725 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 1s. Last read position: chrX:49,173,174
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 23445 as yet unmatched pairs. 21656 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 2s. Last read position: chrX:53,592,422
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 19040 as yet unmatched pairs. 17251 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 1s. Last read position: chrX:69,162,479
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 16846 as yet unmatched pairs. 15057 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chrX:77,688,888
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 15383 as yet unmatched pairs. 13594 records in RAM.
INFO 2026-06-08 08:55:45 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chrX:106,869,531
INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 13064 as yet unmatched pairs. 11275 records in RAM.
INFO 2026-06-08 08:55:47 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chrX:119,872,004
INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 12104 as yet unmatched pairs. 10315 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chrX:136,875,108
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 10347 as yet unmatched pairs. 8558 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chrX:153,867,061
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 7574 as yet unmatched pairs. 5785 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chrX:154,357,495
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 5997 as yet unmatched pairs. 4208 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chrX:154,399,536
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 5983 as yet unmatched pairs. 4194 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,182
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 1642 as yet unmatched pairs. 743 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,203
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 234 as yet unmatched pairs. 216 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 619444814 records. 0 pairs never matched.
INFO 2026-06-08 08:56:47 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141736; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:56:47 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:56:52 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:56:52 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,503
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder Large duplicate set. size = 2196
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,122
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,827
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,272
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder Large duplicate set. size = 1314
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,414
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder Large duplicate set. size = 1557
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,959
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder Large duplicate set. size = 1629
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,704
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder Large duplicate set. size = 1150
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,807
INFO 2026-06-08 08:57:03 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,648
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 1336
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,580
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 2351
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,304
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,730
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 1558
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,494
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 3092
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,631
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,250
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,619
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 1155
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,133
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 1210
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,062
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 1505
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,364
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 1401
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,621
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,108
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 2292
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,240
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,507
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 2019
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,358
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,550
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 1526
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,711
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 1789
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,620
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,192
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder Large duplicate set. size = 1397
INFO 2026-06-08 08:57:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,548
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,301
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder Large duplicate set. size = 1385
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,465
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder Large duplicate set. size = 2339
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,992
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,354
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,808
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,169
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,957
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,348
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,424
INFO 2026-06-08 08:57:05 OpticalDuplicateFinder Large duplicate set. size = 1224
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,982
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder Large duplicate set. size = 1295
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,150
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder Large duplicate set. size = 1173
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,775
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,050
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,998
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,943
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder Large duplicate set. size = 1591
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,747
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder Large duplicate set. size = 2627
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,768
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,826
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,575
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 08:57:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,817
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder Large duplicate set. size = 1368
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,244
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,298
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,503
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder Large duplicate set. size = 1287
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,050
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,099
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,055
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,567
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,871
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder Large duplicate set. size = 1664
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,376
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder Large duplicate set. size = 1430
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,433
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder Large duplicate set. size = 1417
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,244
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder Large duplicate set. size = 1194
INFO 2026-06-08 08:57:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,755
INFO 2026-06-08 08:57:14 OpticalDuplicateFinder Large duplicate set. size = 1884
INFO 2026-06-08 08:57:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,995
INFO 2026-06-08 08:57:19 OpticalDuplicateFinder Large duplicate set. size = 1837
INFO 2026-06-08 08:57:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,338
INFO 2026-06-08 08:57:19 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 08:57:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,344
INFO 2026-06-08 08:57:44 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 08:57:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,735
INFO 2026-06-08 08:57:44 OpticalDuplicateFinder Large duplicate set. size = 2047
INFO 2026-06-08 08:57:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,786
INFO 2026-06-08 08:57:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,165
INFO 2026-06-08 08:57:44 OpticalDuplicateFinder Large duplicate set. size = 1213
INFO 2026-06-08 08:57:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,385
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,180
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder Large duplicate set. size = 1990
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,803
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder Large duplicate set. size = 1202
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,084
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder Large duplicate set. size = 1485
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,760
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder Large duplicate set. size = 1184
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,585
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder Large duplicate set. size = 1240
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,427
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 08:57:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,676
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,139
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1924
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,788
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,226
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1031
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,997
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,461
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,011
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,081
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1129
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,978
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1515
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,973
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,857
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,035
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,047
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 08:57:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,949
INFO 2026-06-08 08:57:50 OpticalDuplicateFinder Large duplicate set. size = 1388
INFO 2026-06-08 08:57:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,123
INFO 2026-06-08 08:57:50 OpticalDuplicateFinder Large duplicate set. size = 1158
INFO 2026-06-08 08:57:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,318
INFO 2026-06-08 08:57:50 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 08:57:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,735
INFO 2026-06-08 08:57:50 OpticalDuplicateFinder Large duplicate set. size = 1417
INFO 2026-06-08 08:57:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,413
INFO 2026-06-08 08:57:50 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 08:57:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,770
INFO 2026-06-08 08:57:50 OpticalDuplicateFinder Large duplicate set. size = 1274
INFO 2026-06-08 08:57:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,424
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1279
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,019
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1403
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,695
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1761
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,445
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1695
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,231
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,790
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1990
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,258
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1237
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,432
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1598
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,535
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1702
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,157
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,601
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1674
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,249
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1867
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,834
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 2587
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,658
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,794
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1381
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,299
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1426
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,057
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 3016
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,823
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,142
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,864
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1293
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,827
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1258
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,458
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1519
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,605
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1181
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,226
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1788
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,574
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 3814
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,489
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,965
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,332
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1478
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,790
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1245
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,041
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder Large duplicate set. size = 1404
INFO 2026-06-08 08:57:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,280
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,782
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1554
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,063
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 2118
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,781
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,062
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,911
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1687
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,793
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,820
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 2613
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,128
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,709
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1318
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,297
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,602
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,948
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,608
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1324
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,780
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1448
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,777
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1193
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,232
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1947
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,026
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,357
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1815
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,359
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1354
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,743
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1417
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,517
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1413
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,028
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1778
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,322
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 2484
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,255
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,944
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 2312
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,141
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,458
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 2110
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,802
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,124
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 3412
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,452
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,878
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,085
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1638
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,969
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 2153
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,771
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,856
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,931
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1370
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,424
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1312
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,662
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1236
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,091
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1998
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,418
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,090
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1404
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,234
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1172
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,620
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1517
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,948
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1505
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,603
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1614
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,177
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 2401
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,087
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,898
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,198
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1769
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,671
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1305
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,629
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,115
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1169
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,718
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1777
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,557
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 08:57:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,912
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 1229
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,914
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 2485
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,337
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,002
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,324
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 1539
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,530
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 2123
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,769
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,717
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,390
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,368
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 1310
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,407
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,262
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,381
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,103
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,378
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,118
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 2169
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,652
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,406
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-08 08:57:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,109
INFO 2026-06-08 08:57:54 OpticalDuplicateFinder Large duplicate set. size = 1193
INFO 2026-06-08 08:57:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,782
INFO 2026-06-08 08:57:54 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 08:57:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,848
INFO 2026-06-08 08:57:54 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 08:57:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,290
INFO 2026-06-08 08:57:54 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 08:57:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,726
INFO 2026-06-08 08:57:54 OpticalDuplicateFinder Large duplicate set. size = 1349
INFO 2026-06-08 08:57:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,502
INFO 2026-06-08 08:58:25 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:58:25 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:59:28 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:59:30 MarkDuplicates After generateDuplicateIndexes freeMemory: 203869208; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:59:30 MarkDuplicates Marking 298256268 records as duplicates.
INFO 2026-06-08 08:59:30 MarkDuplicates Found 14568775 optical duplicate clusters.
INFO 2026-06-08 08:59:30 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:59:47 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:21,831,494
INFO 2026-06-08 09:00:02 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 15s. Last read position: chr1:36,469,156
INFO 2026-06-08 09:00:18 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:48s. Time for last 10,000,000: 15s. Last read position: chr1:109,235,376
INFO 2026-06-08 09:00:34 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:03s. Time for last 10,000,000: 15s. Last read position: chr1:154,977,986
INFO 2026-06-08 09:00:49 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:19s. Time for last 10,000,000: 15s. Last read position: chr1:183,240,066
INFO 2026-06-08 09:01:05 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:34s. Time for last 10,000,000: 15s. Last read position: chr1:235,168,528
INFO 2026-06-08 09:01:20 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:49s. Time for last 10,000,000: 15s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:01:35 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:05s. Time for last 10,000,000: 15s. Last read position: chr2:96,861,438
INFO 2026-06-08 09:01:51 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:20s. Time for last 10,000,000: 15s. Last read position: chr2:178,624,588
INFO 2026-06-08 09:02:06 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:36s. Time for last 10,000,000: 15s. Last read position: chr2:215,372,124
INFO 2026-06-08 09:02:22 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:51s. Time for last 10,000,000: 15s. Last read position: chr2:215,407,158
INFO 2026-06-08 09:02:37 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:07s. Time for last 10,000,000: 15s. Last read position: chr2:231,460,765
INFO 2026-06-08 09:02:52 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:22s. Time for last 10,000,000: 15s. Last read position: chr3:48,592,144
INFO 2026-06-08 09:03:08 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:37s. Time for last 10,000,000: 15s. Last read position: chr3:127,016,647
INFO 2026-06-08 09:03:23 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:53s. Time for last 10,000,000: 15s. Last read position: chr3:188,609,520
INFO 2026-06-08 09:03:39 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 15s. Last read position: chr4:74,038,571
INFO 2026-06-08 09:03:54 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:24s. Time for last 10,000,000: 15s. Last read position: chr5:14,498,095
INFO 2026-06-08 09:04:10 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:40s. Time for last 10,000,000: 15s. Last read position: chr5:140,360,832
INFO 2026-06-08 09:04:25 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:55s. Time for last 10,000,000: 15s. Last read position: chr5:179,774,392
INFO 2026-06-08 09:04:40 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 15s. Last read position: chr6:31,816,023
INFO 2026-06-08 09:04:55 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:25s. Time for last 10,000,000: 15s. Last read position: chr6:56,634,919
INFO 2026-06-08 09:05:11 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:40s. Time for last 10,000,000: 15s. Last read position: chr6:159,692,401
INFO 2026-06-08 09:05:26 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:56s. Time for last 10,000,000: 15s. Last read position: chr7:33,146,335
INFO 2026-06-08 09:05:41 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:11s. Time for last 10,000,000: 15s. Last read position: chr7:76,303,823
INFO 2026-06-08 09:05:56 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:26s. Time for last 10,000,000: 15s. Last read position: chr7:127,721,345
INFO 2026-06-08 09:06:11 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:41s. Time for last 10,000,000: 15s. Last read position: chr8:47,737,421
INFO 2026-06-08 09:06:27 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:56s. Time for last 10,000,000: 15s. Last read position: chr8:133,262,085
INFO 2026-06-08 09:06:42 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:11s. Time for last 10,000,000: 14s. Last read position: chr9:35,607,598
INFO 2026-06-08 09:06:57 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:27s. Time for last 10,000,000: 15s. Last read position: chr9:115,086,478
INFO 2026-06-08 09:07:12 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:42s. Time for last 10,000,000: 15s. Last read position: chr10:17,229,851
INFO 2026-06-08 09:07:28 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:57s. Time for last 10,000,000: 15s. Last read position: chr10:87,792,746
INFO 2026-06-08 09:07:44 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:14s. Time for last 10,000,000: 16s. Last read position: chr11:320,618
INFO 2026-06-08 09:08:01 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:30s. Time for last 10,000,000: 16s. Last read position: chr11:47,378,326
INFO 2026-06-08 09:08:18 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:47s. Time for last 10,000,000: 16s. Last read position: chr11:64,860,287
INFO 2026-06-08 09:08:35 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:04s. Time for last 10,000,000: 17s. Last read position: chr11:77,016,763
INFO 2026-06-08 09:08:52 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:21s. Time for last 10,000,000: 17s. Last read position: chr12:4,659,056
INFO 2026-06-08 09:09:08 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:38s. Time for last 10,000,000: 16s. Last read position: chr12:49,484,639
INFO 2026-06-08 09:09:24 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:54s. Time for last 10,000,000: 15s. Last read position: chr12:57,091,154
INFO 2026-06-08 09:09:40 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:10s. Time for last 10,000,000: 16s. Last read position: chr12:113,387,005
INFO 2026-06-08 09:09:56 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:25s. Time for last 10,000,000: 15s. Last read position: chr13:97,992,989
INFO 2026-06-08 09:10:11 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:41s. Time for last 10,000,000: 15s. Last read position: chr14:55,667,256
INFO 2026-06-08 09:10:28 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:57s. Time for last 10,000,000: 16s. Last read position: chr14:104,941,418
INFO 2026-06-08 09:10:44 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:13s. Time for last 10,000,000: 16s. Last read position: chr15:59,224,749
INFO 2026-06-08 09:11:00 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:29s. Time for last 10,000,000: 15s. Last read position: chr16:2,766,381
INFO 2026-06-08 09:11:15 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:45s. Time for last 10,000,000: 15s. Last read position: chr16:30,070,014
INFO 2026-06-08 09:11:31 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:00s. Time for last 10,000,000: 15s. Last read position: chr16:74,470,004
INFO 2026-06-08 09:11:46 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:16s. Time for last 10,000,000: 15s. Last read position: chr17:16,382,491
INFO 2026-06-08 09:12:02 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:31s. Time for last 10,000,000: 15s. Last read position: chr17:41,612,240
INFO 2026-06-08 09:12:17 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:46s. Time for last 10,000,000: 14s. Last read position: chr17:50,187,878
INFO 2026-06-08 09:12:32 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:02s. Time for last 10,000,000: 15s. Last read position: chr17:50,194,376
INFO 2026-06-08 09:12:48 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:18s. Time for last 10,000,000: 15s. Last read position: chr17:59,647,449
INFO 2026-06-08 09:13:05 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:34s. Time for last 10,000,000: 16s. Last read position: chr17:81,672,091
INFO 2026-06-08 09:13:22 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:51s. Time for last 10,000,000: 17s. Last read position: chr19:581,348
INFO 2026-06-08 09:13:39 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:08s. Time for last 10,000,000: 17s. Last read position: chr19:11,023,608
INFO 2026-06-08 09:13:56 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:25s. Time for last 10,000,000: 16s. Last read position: chr19:35,023,514
INFO 2026-06-08 09:14:13 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:43s. Time for last 10,000,000: 17s. Last read position: chr19:48,873,424
INFO 2026-06-08 09:14:31 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:00s. Time for last 10,000,000: 17s. Last read position: chr20:33,640,379
INFO 2026-06-08 09:14:49 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:18s. Time for last 10,000,000: 17s. Last read position: chr21:8,258,910
INFO 2026-06-08 09:15:06 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:35s. Time for last 10,000,000: 17s. Last read position: chr22:23,273,081
INFO 2026-06-08 09:15:25 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:55s. Time for last 10,000,000: 19s. Last read position: chr22:45,931,157
INFO 2026-06-08 09:15:43 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:13s. Time for last 10,000,000: 17s. Last read position: chrX:69,162,479
INFO 2026-06-08 09:15:59 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:29s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-08 09:16:04 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:16:04 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:16:04 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:16:04 MarkDuplicates Before output close freeMemory: 203846104; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:16:04 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:16:04 MarkDuplicates After output close freeMemory: 104080416; totalMemory: 134217728; maxMemory: 63585648640
Tool returned:
0
[Mon Jun 08 09:16:04 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.30 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory