Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/556d03f09ec67e524440264907f29c/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/e1f8d83f194c45e4958c1347276012/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/e1f8d83f194c45e4958c1347276012/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/2a5c73bbe05382f282f89a9d3e3f62/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (17951027) splicing reads. 278028 splicing junctions. 191722 known splicing junctions. 86306 novel splicing junctions.
sampling 10% (35902054) splicing reads. 345442 splicing junctions. 205162 known splicing junctions. 140280 novel splicing junctions.
sampling 15% (53853082) splicing reads. 395413 splicing junctions. 212416 known splicing junctions. 182997 novel splicing junctions.
sampling 20% (71804109) splicing reads. 435660 splicing junctions. 217228 known splicing junctions. 218432 novel splicing junctions.
sampling 25% (89755136) splicing reads. 469503 splicing junctions. 220751 known splicing junctions. 248752 novel splicing junctions.
sampling 30% (107706164) splicing reads. 498678 splicing junctions. 223457 known splicing junctions. 275221 novel splicing junctions.
sampling 35% (125657191) splicing reads. 524174 splicing junctions. 225655 known splicing junctions. 298519 novel splicing junctions.
sampling 40% (143608218) splicing reads. 546843 splicing junctions. 227403 known splicing junctions. 319440 novel splicing junctions.
sampling 45% (161559246) splicing reads. 567109 splicing junctions. 228931 known splicing junctions. 338178 novel splicing junctions.
sampling 50% (179510273) splicing reads. 585124 splicing junctions. 230213 known splicing junctions. 354911 novel splicing junctions.
sampling 55% (197461300) splicing reads. 601273 splicing junctions. 231327 known splicing junctions. 369946 novel splicing junctions.
sampling 60% (215412328) splicing reads. 615743 splicing junctions. 232255 known splicing junctions. 383488 novel splicing junctions.
sampling 65% (233363355) splicing reads. 628862 splicing junctions. 233051 known splicing junctions. 395811 novel splicing junctions.
sampling 70% (251314382) splicing reads. 640489 splicing junctions. 233774 known splicing junctions. 406715 novel splicing junctions.
sampling 75% (269265410) splicing reads. 650836 splicing junctions. 234385 known splicing junctions. 416451 novel splicing junctions.
sampling 80% (287216437) splicing reads. 659980 splicing junctions. 234892 known splicing junctions. 425088 novel splicing junctions.
sampling 85% (305167464) splicing reads. 668024 splicing junctions. 235364 known splicing junctions. 432660 novel splicing junctions.
sampling 90% (323118492) splicing reads. 675205 splicing junctions. 235766 known splicing junctions. 439439 novel splicing junctions.
sampling 95% (341069519) splicing reads. 681292 splicing junctions. 236090 known splicing junctions. 445202 novel splicing junctions.
sampling 100% (359020547) splicing reads. 686463 splicing junctions. 236356 known splicing junctions. 450107 novel splicing junctions.
null device 
          1