#!/bin/bash -euo pipefail agat_convert_sp_gff2tsv.pl \ --gff 659_bMa-T1-TRNA-1_B23MHV2LT4_1.gtf \ --output 659_bMa-T1-TRNA-1_B23MHV2LT4_1.tsv \ cat <<-END_VERSIONS > versions.yml "NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV": agat: $(agat_convert_sp_gff2tsv.pl --help | sed '3!d; s/.*v//' | sed 's/ .*//') END_VERSIONS