Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/396b2b0e8e8b5660db835ef65cd5d2/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/d1fe7198dcb6bcc895ce4093625600/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/d1fe7198dcb6bcc895ce4093625600/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/b1c730008ac96f126a138bfe8b3a61/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory