Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/1de8d840453b7213da8945c33fe2f0/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/6e49817847e0ef514755e2cd647a4c/fi_workdir/659_dts-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/1de8d840453b7213da8945c33fe2f0/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 7167
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 7167
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:7167
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
BTBD9--BAGE2 HAVANA gene 4762 25537 . + . FI_gene_label "BTBD9^ENSG00000183826.18" ; ID "BTBD9--BAGE2^BTBD9^ENSG00000183826.18" ; ccdsid "CCDS43458.1" ; exon_id "ENSE00003787473.1" ; exon_number 2 ; gene_id "BTBD9--BAGE2^BTBD9^ENSG00000183826.18" ; gene_name BTBD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014634.10" ; havana_transcript "OTTHUMT00000040432.2" ; hgnc_id "HGNC:21228" ; level 2 ; orig_coord_info "chr6,38593964,38594308,-" ; protein_id "ENSP00000323408.6" ; tag basic CCDS ; transcript_id "BTBD9--BAGE2^ENST00000314100.10" ; transcript_name "BTBD9-201" ; transcript_support_level 1 ; transcript_type protein_coding
BTBD9--BAGE2 HAVANA mRNA 4762 25537 . + . FI_gene_label "BTBD9^ENSG00000183826.18" ; ID "BTBD9--BAGE2^ENST00000314100.10" ; Parent "BTBD9--BAGE2^BTBD9^ENSG00000183826.18" ; ccdsid "CCDS43458.1" ; exon_id "ENSE00003787473.1" ; exon_number 2 ; gene_id "BTBD9--BAGE2^BTBD9^ENSG00000183826.18" ; gene_name BTBD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014634.10" ; havana_transcript "OTTHUMT00000040432.2" ; hgnc_id "HGNC:21228" ; level 2 ; orig_coord_info "chr6,38593964,38594308,-" ; protein_id "ENSP00000323408.6" ; tag basic CCDS ; transcript_id "BTBD9--BAGE2^ENST00000314100.10" ; transcript_name "BTBD9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BTBD9--CU104787.1 HAVANA gene 4762 25537 . + . FI_gene_label "BTBD9^ENSG00000183826.18" ; ID "BTBD9--CU104787.1^BTBD9^ENSG00000183826.18" ; ccdsid "CCDS43458.1" ; exon_id "ENSE00003787473.1" ; exon_number 2 ; gene_id "BTBD9--CU104787.1^BTBD9^ENSG00000183826.18" ; gene_name BTBD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014634.10" ; havana_transcript "OTTHUMT00000040432.2" ; hgnc_id "HGNC:21228" ; level 2 ; orig_coord_info "chr6,38593964,38594308,-" ; protein_id "ENSP00000323408.6" ; tag basic CCDS ; transcript_id "BTBD9--CU104787.1^ENST00000314100.10" ; transcript_name "BTBD9-201" ; transcript_support_level 1 ; transcript_type protein_coding
BTBD9--CU104787.1 HAVANA mRNA 4762 25537 . + . FI_gene_label "BTBD9^ENSG00000183826.18" ; ID "BTBD9--CU104787.1^ENST00000314100.10" ; Parent "BTBD9--CU104787.1^BTBD9^ENSG00000183826.18" ; ccdsid "CCDS43458.1" ; exon_id "ENSE00003787473.1" ; exon_number 2 ; gene_id "BTBD9--CU104787.1^BTBD9^ENSG00000183826.18" ; gene_name BTBD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014634.10" ; havana_transcript "OTTHUMT00000040432.2" ; hgnc_id "HGNC:21228" ; level 2 ; orig_coord_info "chr6,38593964,38594308,-" ; protein_id "ENSP00000323408.6" ; tag basic CCDS ; transcript_id "BTBD9--CU104787.1^ENST00000314100.10" ; transcript_name "BTBD9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CTNND1--CLDN12 HAVANA gene 34738 42826 . + . FI_gene_label "CLDN12^ENSG00000157224.16" ; ID "CTNND1--CLDN12^CLDN12^ENSG00000157224.16" ; ccdsid "CCDS5618.1" ; exon_id "ENSE00001518982.1" ; exon_number 3 ; gene_id "CTNND1--CLDN12^CLDN12^ENSG00000157224.16" ; gene_name CLDN12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156612.7" ; havana_transcript "OTTHUMT00000059221.1" ; hgnc_id "HGNC:2034" ; level 2 ; orig_coord_info "chr7,90412677,90413408,+" ; protein_id "ENSP00000287916.4" ; tag basic appris_principal_1 CCDS ; transcript_id "CTNND1--CLDN12^ENST00000287916.8" ; transcript_name "CLDN12-201" ; transcript_support_level 1 ; transcript_type protein_coding
CTNND1--CLDN12 HAVANA mRNA 34738 42826 . + . FI_gene_label "CLDN12^ENSG00000157224.16" ; ID "CTNND1--CLDN12^ENST00000287916.8" ; Parent "CTNND1--CLDN12^CLDN12^ENSG00000157224.16" ; ccdsid "CCDS5618.1" ; exon_id "ENSE00001518982.1" ; exon_number 3 ; gene_id "CTNND1--CLDN12^CLDN12^ENSG00000157224.16" ; gene_name CLDN12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156612.7" ; havana_transcript "OTTHUMT00000059221.1" ; hgnc_id "HGNC:2034" ; level 2 ; orig_coord_info "chr7,90412677,90413408,+" ; protein_id "ENSP00000287916.4" ; tag basic appris_principal_1 CCDS ; transcript_id "CTNND1--CLDN12^ENST00000287916.8" ; transcript_name "CLDN12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CTNND1--CLDN12 HAVANA gene 2301 28955 . + . FI_gene_label "CTNND1^ENSG00000198561.15" ; ID "CTNND1--CLDN12^CTNND1^ENSG00000198561.15" ; ccdsid "CCDS44606.1" ; exon_id "ENSE00003476489.1" ; exon_number 3 ; gene_id "CTNND1--CLDN12^CTNND1^ENSG00000198561.15" ; gene_name CTNND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167272.9" ; havana_transcript "OTTHUMT00000393949.1" ; hgnc_id "HGNC:2515" ; level 2 ; orig_coord_info "chr11,57791479,57791673,+" ; protein_id "ENSP00000351527.6" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "CTNND1--CLDN12^ENST00000358694.10" ; transcript_name "CTNND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CTNND1--CLDN12 HAVANA mRNA 2301 28955 . + . FI_gene_label "CTNND1^ENSG00000198561.15" ; ID "CTNND1--CLDN12^ENST00000358694.10" ; Parent "CTNND1--CLDN12^CTNND1^ENSG00000198561.15" ; ccdsid "CCDS44606.1" ; exon_id "ENSE00003476489.1" ; exon_number 3 ; gene_id "CTNND1--CLDN12^CTNND1^ENSG00000198561.15" ; gene_name CTNND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167272.9" ; havana_transcript "OTTHUMT00000393949.1" ; hgnc_id "HGNC:2515" ; level 2 ; orig_coord_info "chr11,57791479,57791673,+" ; protein_id "ENSP00000351527.6" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "CTNND1--CLDN12^ENST00000358694.10" ; transcript_name "CTNND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CTNND1--DENND10 HAVANA gene 2301 28955 . + . FI_gene_label "CTNND1^ENSG00000198561.15" ; ID "CTNND1--DENND10^CTNND1^ENSG00000198561.15" ; ccdsid "CCDS44606.1" ; exon_id "ENSE00003476489.1" ; exon_number 3 ; gene_id "CTNND1--DENND10^CTNND1^ENSG00000198561.15" ; gene_name CTNND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167272.9" ; havana_transcript "OTTHUMT00000393949.1" ; hgnc_id "HGNC:2515" ; level 2 ; orig_coord_info "chr11,57791479,57791673,+" ; protein_id "ENSP00000351527.6" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "CTNND1--DENND10^ENST00000358694.10" ; transcript_name "CTNND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CTNND1--DENND10 HAVANA mRNA 2301 28955 . + . FI_gene_label "CTNND1^ENSG00000198561.15" ; ID "CTNND1--DENND10^ENST00000358694.10" ; Parent "CTNND1--DENND10^CTNND1^ENSG00000198561.15" ; ccdsid "CCDS44606.1" ; exon_id "ENSE00003476489.1" ; exon_number 3 ; gene_id "CTNND1--DENND10^CTNND1^ENSG00000198561.15" ; gene_name CTNND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167272.9" ; havana_transcript "OTTHUMT00000393949.1" ; hgnc_id "HGNC:2515" ; level 2 ; orig_coord_info "chr11,57791479,57791673,+" ; protein_id "ENSP00000351527.6" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "CTNND1--DENND10^ENST00000358694.10" ; transcript_name "CTNND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CTNND1--DENND10 HAVANA gene 32351 49497 . + . FI_gene_label "DENND10^ENSG00000119979.18" ; ID "CTNND1--DENND10^DENND10^ENSG00000119979.18" ; ccdsid "CCDS7609.1" ; exon_id "ENSE00003682624.2" ; exon_number 1 ; gene_id "CTNND1--DENND10^DENND10^ENSG00000119979.18" ; gene_name DENND10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019143.4" ; havana_transcript "OTTHUMT00000050623.2" ; hgnc_id "HGNC:31793" ; level 2 ; orig_coord_info "chr10,119104143,119104197,+" ; protein_id "ENSP00000354688.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "CTNND1--DENND10^ENST00000361432.3" ; transcript_name "DENND10-201" ; transcript_support_level 1 ; transcript_type protein_coding
CTNND1--DENND10 HAVANA mRNA 32351 49497 . + . FI_gene_label "DENND10^ENSG00000119979.18" ; ID "CTNND1--DENND10^ENST00000361432.3" ; Parent "CTNND1--DENND10^DENND10^ENSG00000119979.18" ; ccdsid "CCDS7609.1" ; exon_id "ENSE00003682624.2" ; exon_number 1 ; gene_id "CTNND1--DENND10^DENND10^ENSG00000119979.18" ; gene_name DENND10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019143.4" ; havana_transcript "OTTHUMT00000050623.2" ; hgnc_id "HGNC:31793" ; level 2 ; orig_coord_info "chr10,119104143,119104197,+" ; protein_id "ENSP00000354688.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "CTNND1--DENND10^ENST00000361432.3" ; transcript_name "DENND10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DCAF12--AL354989.2 HAVANA gene 1702 13467 . + . FI_gene_label "DCAF12^ENSG00000198876.13" ; ID "DCAF12--AL354989.2^DCAF12^ENSG00000198876.13" ; ccdsid "CCDS6549.1" ; exon_id "ENSE00001152417.4" ; exon_number 1 ; gene_id "DCAF12--AL354989.2^DCAF12^ENSG00000198876.13" ; gene_name DCAF12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019806.5" ; havana_transcript "OTTHUMT00000052133.3" ; hgnc_id "HGNC:19911" ; level 2 ; orig_coord_info "chr9,34126354,34126431,-" ; protein_id "ENSP00000355114.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DCAF12--AL354989.2^ENST00000361264.9" ; transcript_name "DCAF12-201" ; transcript_support_level 1 ; transcript_type protein_coding
DCAF12--AL354989.2 HAVANA mRNA 1702 13467 . + . FI_gene_label "DCAF12^ENSG00000198876.13" ; ID "DCAF12--AL354989.2^ENST00000361264.9" ; Parent "DCAF12--AL354989.2^DCAF12^ENSG00000198876.13" ; ccdsid "CCDS6549.1" ; exon_id "ENSE00001152417.4" ; exon_number 1 ; gene_id "DCAF12--AL354989.2^DCAF12^ENSG00000198876.13" ; gene_name DCAF12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019806.5" ; havana_transcript "OTTHUMT00000052133.3" ; hgnc_id "HGNC:19911" ; level 2 ; orig_coord_info "chr9,34126354,34126431,-" ; protein_id "ENSP00000355114.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DCAF12--AL354989.2^ENST00000361264.9" ; transcript_name "DCAF12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DCAF12--UBAP1 HAVANA gene 16506 25007 . + . FI_gene_label "UBAP1^ENSG00000165006.14" ; ID "DCAF12--UBAP1^UBAP1^ENSG00000165006.14" ; ccdsid "CCDS6550.1" ; exon_id "ENSE00003577215.1" ; exon_number 2 ; gene_id "DCAF12--UBAP1^UBAP1^ENSG00000165006.14" ; gene_name UBAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000430.4" ; havana_transcript "OTTHUMT00000001084.2" ; hgnc_id "HGNC:12461" ; level 2 ; orig_coord_info "chr9,34220915,34220948,+" ; protein_id "ENSP00000297661.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DCAF12--UBAP1^ENST00000297661.9" ; transcript_name "UBAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
DCAF12--UBAP1 HAVANA mRNA 16506 25007 . + . FI_gene_label "UBAP1^ENSG00000165006.14" ; ID "DCAF12--UBAP1^ENST00000297661.9" ; Parent "DCAF12--UBAP1^UBAP1^ENSG00000165006.14" ; ccdsid "CCDS6550.1" ; exon_id "ENSE00003577215.1" ; exon_number 2 ; gene_id "DCAF12--UBAP1^UBAP1^ENSG00000165006.14" ; gene_name UBAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000430.4" ; havana_transcript "OTTHUMT00000001084.2" ; hgnc_id "HGNC:12461" ; level 2 ; orig_coord_info "chr9,34220915,34220948,+" ; protein_id "ENSP00000297661.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DCAF12--UBAP1^ENST00000297661.9" ; transcript_name "UBAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DCAF12--UBAP1 HAVANA gene 1702 13467 . + . FI_gene_label "DCAF12^ENSG00000198876.13" ; ID "DCAF12--UBAP1^DCAF12^ENSG00000198876.13" ; ccdsid "CCDS6549.1" ; exon_id "ENSE00001152417.4" ; exon_number 1 ; gene_id "DCAF12--UBAP1^DCAF12^ENSG00000198876.13" ; gene_name DCAF12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019806.5" ; havana_transcript "OTTHUMT00000052133.3" ; hgnc_id "HGNC:19911" ; level 2 ; orig_coord_info "chr9,34126354,34126431,-" ; protein_id "ENSP00000355114.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DCAF12--UBAP1^ENST00000361264.9" ; transcript_name "DCAF12-201" ; transcript_support_level 1 ; transcript_type protein_coding
DCAF12--UBAP1 HAVANA mRNA 1702 13467 . + . FI_gene_label "DCAF12^ENSG00000198876.13" ; ID "DCAF12--UBAP1^ENST00000361264.9" ; Parent "DCAF12--UBAP1^DCAF12^ENSG00000198876.13" ; ccdsid "CCDS6549.1" ; exon_id "ENSE00001152417.4" ; exon_number 1 ; gene_id "DCAF12--UBAP1^DCAF12^ENSG00000198876.13" ; gene_name DCAF12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019806.5" ; havana_transcript "OTTHUMT00000052133.3" ; hgnc_id "HGNC:19911" ; level 2 ; orig_coord_info "chr9,34126354,34126431,-" ; protein_id "ENSP00000355114.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DCAF12--UBAP1^ENST00000361264.9" ; transcript_name "DCAF12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FOXO3--RFLNA HAVANA gene 19603 25404 . + . FI_gene_label "RFLNA^ENSG00000178882.15" ; ID "FOXO3--RFLNA^RFLNA^ENSG00000178882.15" ; ccdsid "CCDS9258.1" ; exon_id "ENSE00003715616.1" ; exon_number 2 ; gene_id "FOXO3--RFLNA^RFLNA^ENSG00000178882.15" ; gene_name RFLNA ; gene_type protein_coding ; havana_gene "OTTHUMG00000168609.6" ; havana_transcript "OTTHUMT00000400391.1" ; hgnc_id "HGNC:27051" ; level 2 ; orig_coord_info "chr12,124311854,124311927,+" ; protein_id "ENSP00000315626.3" ; tag basic CCDS ; transcript_id "FOXO3--RFLNA^ENST00000324038.6" ; transcript_name "RFLNA-201" ; transcript_support_level 2 ; transcript_type protein_coding
FOXO3--RFLNA HAVANA mRNA 19603 25404 . + . FI_gene_label "RFLNA^ENSG00000178882.15" ; ID "FOXO3--RFLNA^ENST00000324038.6" ; Parent "FOXO3--RFLNA^RFLNA^ENSG00000178882.15" ; ccdsid "CCDS9258.1" ; exon_id "ENSE00003715616.1" ; exon_number 2 ; gene_id "FOXO3--RFLNA^RFLNA^ENSG00000178882.15" ; gene_name RFLNA ; gene_type protein_coding ; havana_gene "OTTHUMG00000168609.6" ; havana_transcript "OTTHUMT00000400391.1" ; hgnc_id "HGNC:27051" ; level 2 ; orig_coord_info "chr12,124311854,124311927,+" ; protein_id "ENSP00000315626.3" ; tag basic CCDS ; transcript_id "FOXO3--RFLNA^ENST00000324038.6" ; transcript_name "RFLNA-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
FOXO3--RFLNA HAVANA gene 1001 12571 . + . FI_gene_label "FOXO3^ENSG00000118689.15" ; ID "FOXO3--RFLNA^FOXO3^ENSG00000118689.15" ; ccdsid "CCDS5068.1" ; exon_id "ENSE00001379688.1" ; exon_number 2 ; gene_id "FOXO3--RFLNA^FOXO3^ENSG00000118689.15" ; gene_name FOXO3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015327.4" ; havana_transcript "OTTHUMT00000041722.2" ; hgnc_id "HGNC:3821" ; level 2 ; orig_coord_info "chr6,108561209,108561829,+" ; protein_id "ENSP00000339527.6" ; tag basic appris_principal_1 CCDS ; transcript_id "FOXO3--RFLNA^ENST00000343882.10" ; transcript_name "FOXO3-201" ; transcript_support_level 1 ; transcript_type protein_coding
FOXO3--RFLNA HAVANA mRNA 1001 12571 . + . FI_gene_label "FOXO3^ENSG00000118689.15" ; ID "FOXO3--RFLNA^ENST00000343882.10" ; Parent "FOXO3--RFLNA^FOXO3^ENSG00000118689.15" ; ccdsid "CCDS5068.1" ; exon_id "ENSE00001379688.1" ; exon_number 2 ; gene_id "FOXO3--RFLNA^FOXO3^ENSG00000118689.15" ; gene_name FOXO3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015327.4" ; havana_transcript "OTTHUMT00000041722.2" ; hgnc_id "HGNC:3821" ; level 2 ; orig_coord_info "chr6,108561209,108561829,+" ; protein_id "ENSP00000339527.6" ; tag basic appris_principal_1 CCDS ; transcript_id "FOXO3--RFLNA^ENST00000343882.10" ; transcript_name "FOXO3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GTF2IRD2--STEAP1 HAVANA gene 28258 34036 . + . FI_gene_label "STEAP1^ENSG00000164647.9" ; ID "GTF2IRD2--STEAP1^STEAP1^ENSG00000164647.9" ; ccdsid "CCDS5614.1" ; exon_id "ENSE00003600148.1" ; exon_number 2 ; gene_id "GTF2IRD2--STEAP1^STEAP1^ENSG00000164647.9" ; gene_name STEAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023006.7" ; havana_transcript "OTTHUMT00000059327.4" ; hgnc_id "HGNC:11378" ; level 2 ; orig_coord_info "chr7,90159789,90159872,+" ; protein_id "ENSP00000297205.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2IRD2--STEAP1^ENST00000297205.7" ; transcript_name "STEAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GTF2IRD2--STEAP1 HAVANA mRNA 28258 34036 . + . FI_gene_label "STEAP1^ENSG00000164647.9" ; ID "GTF2IRD2--STEAP1^ENST00000297205.7" ; Parent "GTF2IRD2--STEAP1^STEAP1^ENSG00000164647.9" ; ccdsid "CCDS5614.1" ; exon_id "ENSE00003600148.1" ; exon_number 2 ; gene_id "GTF2IRD2--STEAP1^STEAP1^ENSG00000164647.9" ; gene_name STEAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023006.7" ; havana_transcript "OTTHUMT00000059327.4" ; hgnc_id "HGNC:11378" ; level 2 ; orig_coord_info "chr7,90159789,90159872,+" ; protein_id "ENSP00000297205.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2IRD2--STEAP1^ENST00000297205.7" ; transcript_name "STEAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GTF2IRD2--STEAP1 HAVANA gene 1001 25244 . + . FI_gene_label "GTF2IRD2^ENSG00000196275.14" ; ID "GTF2IRD2--STEAP1^GTF2IRD2^ENSG00000196275.14" ; ccdsid "CCDS5576.1" ; exon_id "ENSE00003740745.1" ; exon_number 2 ; gene_id "GTF2IRD2--STEAP1^GTF2IRD2^ENSG00000196275.14" ; gene_name GTF2IRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181527.5" ; havana_transcript "OTTHUMT00000456474.2" ; hgnc_id "HGNC:30775" ; level 2 ; orig_coord_info "chr7,74836280,74836378,-" ; protein_id "ENSP00000406723.3" ; tag basic CCDS ; transcript_id "GTF2IRD2--STEAP1^ENST00000451013.6" ; transcript_name "GTF2IRD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GTF2IRD2--STEAP1 HAVANA mRNA 1001 25244 . + . FI_gene_label "GTF2IRD2^ENSG00000196275.14" ; ID "GTF2IRD2--STEAP1^ENST00000451013.6" ; Parent "GTF2IRD2--STEAP1^GTF2IRD2^ENSG00000196275.14" ; ccdsid "CCDS5576.1" ; exon_id "ENSE00003740745.1" ; exon_number 2 ; gene_id "GTF2IRD2--STEAP1^GTF2IRD2^ENSG00000196275.14" ; gene_name GTF2IRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181527.5" ; havana_transcript "OTTHUMT00000456474.2" ; hgnc_id "HGNC:30775" ; level 2 ; orig_coord_info "chr7,74836280,74836378,-" ; protein_id "ENSP00000406723.3" ; tag basic CCDS ; transcript_id "GTF2IRD2--STEAP1^ENST00000451013.6" ; transcript_name "GTF2IRD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IFT74--LINC01241 HAVANA gene 2488 30910 . + . FI_gene_label "IFT74^ENSG00000096872.17" ; ID "IFT74--LINC01241^IFT74^ENSG00000096872.17" ; ccdsid "CCDS43793.1" ; exon_id "ENSE00001483658.1" ; exon_number 2 ; gene_id "IFT74--LINC01241^IFT74^ENSG00000096872.17" ; gene_name IFT74 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021028.5" ; havana_transcript "OTTHUMT00000055476.2" ; hgnc_id "HGNC:21424" ; level 2 ; orig_coord_info "chr9,26961968,26962087,+" ; protein_id "ENSP00000369402.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IFT74--LINC01241^ENST00000380062.10" ; transcript_name "IFT74-201" ; transcript_support_level 1 ; transcript_type protein_coding
IFT74--LINC01241 HAVANA mRNA 2488 30910 . + . FI_gene_label "IFT74^ENSG00000096872.17" ; ID "IFT74--LINC01241^ENST00000380062.10" ; Parent "IFT74--LINC01241^IFT74^ENSG00000096872.17" ; ccdsid "CCDS43793.1" ; exon_id "ENSE00001483658.1" ; exon_number 2 ; gene_id "IFT74--LINC01241^IFT74^ENSG00000096872.17" ; gene_name IFT74 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021028.5" ; havana_transcript "OTTHUMT00000055476.2" ; hgnc_id "HGNC:21424" ; level 2 ; orig_coord_info "chr9,26961968,26962087,+" ; protein_id "ENSP00000369402.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IFT74--LINC01241^ENST00000380062.10" ; transcript_name "IFT74-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IFT74--TUSC1 HAVANA gene 33911 35962 . + . FI_gene_label "TUSC1^ENSG00000198680.5" ; ID "IFT74--TUSC1^TUSC1^ENSG00000198680.5" ; exon_id "ENSE00001408181.4" ; exon_number 1 ; gene_id "IFT74--TUSC1^TUSC1^ENSG00000198680.5" ; gene_name TUSC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159591.1" ; hgnc_id "HGNC:31010" ; level 2 ; orig_coord_info "chr9,25677686,25678312,-" ; protein_id "ENSP00000350716.4" ; tag upstream_ATG basic appris_principal_1 ; transcript_id "IFT74--TUSC1^ENST00000358022.5" ; transcript_name "TUSC1-201" ; transcript_support_level NA ; transcript_type protein_coding
IFT74--TUSC1 HAVANA mRNA 33911 35962 . + . FI_gene_label "TUSC1^ENSG00000198680.5" ; ID "IFT74--TUSC1^ENST00000358022.5" ; Parent "IFT74--TUSC1^TUSC1^ENSG00000198680.5" ; exon_id "ENSE00001408181.4" ; exon_number 1 ; gene_id "IFT74--TUSC1^TUSC1^ENSG00000198680.5" ; gene_name TUSC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159591.1" ; hgnc_id "HGNC:31010" ; level 2 ; orig_coord_info "chr9,25677686,25678312,-" ; protein_id "ENSP00000350716.4" ; tag upstream_ATG basic appris_principal_1 ; transcript_id "IFT74--TUSC1^ENST00000358022.5" ; transcript_name "TUSC1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
IFT74--TUSC1 HAVANA gene 2488 30910 . + . FI_gene_label "IFT74^ENSG00000096872.17" ; ID "IFT74--TUSC1^IFT74^ENSG00000096872.17" ; ccdsid "CCDS43793.1" ; exon_id "ENSE00001483658.1" ; exon_number 2 ; gene_id "IFT74--TUSC1^IFT74^ENSG00000096872.17" ; gene_name IFT74 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021028.5" ; havana_transcript "OTTHUMT00000055476.2" ; hgnc_id "HGNC:21424" ; level 2 ; orig_coord_info "chr9,26961968,26962087,+" ; protein_id "ENSP00000369402.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IFT74--TUSC1^ENST00000380062.10" ; transcript_name "IFT74-201" ; transcript_support_level 1 ; transcript_type protein_coding
IFT74--TUSC1 HAVANA mRNA 2488 30910 . + . FI_gene_label "IFT74^ENSG00000096872.17" ; ID "IFT74--TUSC1^ENST00000380062.10" ; Parent "IFT74--TUSC1^IFT74^ENSG00000096872.17" ; ccdsid "CCDS43793.1" ; exon_id "ENSE00001483658.1" ; exon_number 2 ; gene_id "IFT74--TUSC1^IFT74^ENSG00000096872.17" ; gene_name IFT74 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021028.5" ; havana_transcript "OTTHUMT00000055476.2" ; hgnc_id "HGNC:21424" ; level 2 ; orig_coord_info "chr9,26961968,26962087,+" ; protein_id "ENSP00000369402.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IFT74--TUSC1^ENST00000380062.10" ; transcript_name "IFT74-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIF5B--RET HAVANA gene 1001 24630 . + . FI_gene_label "KIF5B^ENSG00000170759.11" ; ID "KIF5B--RET^KIF5B^ENSG00000170759.11" ; ccdsid "CCDS7171.1" ; exon_id "ENSE00001551533.4" ; exon_number 1 ; gene_id "KIF5B--RET^KIF5B^ENSG00000170759.11" ; gene_name KIF5B ; gene_type protein_coding ; havana_gene "OTTHUMG00000017913.2" ; havana_transcript "OTTHUMT00000047467.2" ; hgnc_id "HGNC:6324" ; level 2 ; orig_coord_info "chr10,32055848,32055973,-" ; protein_id "ENSP00000307078.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIF5B--RET^ENST00000302418.5" ; transcript_name "KIF5B-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIF5B--RET HAVANA mRNA 1001 24630 . + . FI_gene_label "KIF5B^ENSG00000170759.11" ; ID "KIF5B--RET^ENST00000302418.5" ; Parent "KIF5B--RET^KIF5B^ENSG00000170759.11" ; ccdsid "CCDS7171.1" ; exon_id "ENSE00001551533.4" ; exon_number 1 ; gene_id "KIF5B--RET^KIF5B^ENSG00000170759.11" ; gene_name KIF5B ; gene_type protein_coding ; havana_gene "OTTHUMG00000017913.2" ; havana_transcript "OTTHUMT00000047467.2" ; hgnc_id "HGNC:6324" ; level 2 ; orig_coord_info "chr10,32055848,32055973,-" ; protein_id "ENSP00000307078.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIF5B--RET^ENST00000302418.5" ; transcript_name "KIF5B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIF5B--RET HAVANA gene 27636 48256 . + . FI_gene_label "RET^ENSG00000165731.20" ; ID "KIF5B--RET^RET^ENSG00000165731.20" ; ccdsid "CCDS53525.1" ; exon_id "ENSE00003744437.1" ; exon_number 1 ; gene_id "KIF5B--RET^RET^ENSG00000165731.20" ; gene_name RET ; gene_type protein_coding ; havana_gene "OTTHUMG00000018024.7" ; havana_transcript "OTTHUMT00000358138.3" ; hgnc_id "HGNC:9967" ; level 2 ; orig_coord_info "chr10,43077259,43077331,+" ; protein_id "ENSP00000344798.4" ; tag basic CCDS ; transcript_id "KIF5B--RET^ENST00000340058.6" ; transcript_name "RET-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIF5B--RET HAVANA mRNA 27636 48256 . + . FI_gene_label "RET^ENSG00000165731.20" ; ID "KIF5B--RET^ENST00000340058.6" ; Parent "KIF5B--RET^RET^ENSG00000165731.20" ; ccdsid "CCDS53525.1" ; exon_id "ENSE00003744437.1" ; exon_number 1 ; gene_id "KIF5B--RET^RET^ENSG00000165731.20" ; gene_name RET ; gene_type protein_coding ; havana_gene "OTTHUMG00000018024.7" ; havana_transcript "OTTHUMT00000358138.3" ; hgnc_id "HGNC:9967" ; level 2 ; orig_coord_info "chr10,43077259,43077331,+" ; protein_id "ENSP00000344798.4" ; tag basic CCDS ; transcript_id "KIF5B--RET^ENST00000340058.6" ; transcript_name "RET-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MED19--AC024405.2 HAVANA gene 1109 3877 . + . FI_gene_label "MED19^ENSG00000156603.19" ; ID "MED19--AC024405.2^MED19^ENSG00000156603.19" ; exon_id "ENSE00003846435.1" ; exon_number 1 ; gene_id "MED19--AC024405.2^MED19^ENSG00000156603.19" ; gene_name MED19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167199.5" ; havana_transcript "OTTHUMT00000492764.2" ; hgnc_id "HGNC:29600" ; level 2 ; orig_coord_info "chr11,57711963,57712179,-" ; protein_id "ENSP00000337340.4" ; tag upstream_ATG basic ; transcript_id "MED19--AC024405.2^ENST00000337672.9" ; transcript_name "MED19-201" ; transcript_support_level 1 ; transcript_type protein_coding
MED19--AC024405.2 HAVANA mRNA 1109 3877 . + . FI_gene_label "MED19^ENSG00000156603.19" ; ID "MED19--AC024405.2^ENST00000337672.9" ; Parent "MED19--AC024405.2^MED19^ENSG00000156603.19" ; exon_id "ENSE00003846435.1" ; exon_number 1 ; gene_id "MED19--AC024405.2^MED19^ENSG00000156603.19" ; gene_name MED19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167199.5" ; havana_transcript "OTTHUMT00000492764.2" ; hgnc_id "HGNC:29600" ; level 2 ; orig_coord_info "chr11,57711963,57712179,-" ; protein_id "ENSP00000337340.4" ; tag upstream_ATG basic ; transcript_id "MED19--AC024405.2^ENST00000337672.9" ; transcript_name "MED19-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MED19--AP003721.2 HAVANA gene 1109 3877 . + . FI_gene_label "MED19^ENSG00000156603.19" ; ID "MED19--AP003721.2^MED19^ENSG00000156603.19" ; exon_id "ENSE00003846435.1" ; exon_number 1 ; gene_id "MED19--AP003721.2^MED19^ENSG00000156603.19" ; gene_name MED19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167199.5" ; havana_transcript "OTTHUMT00000492764.2" ; hgnc_id "HGNC:29600" ; level 2 ; orig_coord_info "chr11,57711963,57712179,-" ; protein_id "ENSP00000337340.4" ; tag upstream_ATG basic ; transcript_id "MED19--AP003721.2^ENST00000337672.9" ; transcript_name "MED19-201" ; transcript_support_level 1 ; transcript_type protein_coding
MED19--AP003721.2 HAVANA mRNA 1109 3877 . + . FI_gene_label "MED19^ENSG00000156603.19" ; ID "MED19--AP003721.2^ENST00000337672.9" ; Parent "MED19--AP003721.2^MED19^ENSG00000156603.19" ; exon_id "ENSE00003846435.1" ; exon_number 1 ; gene_id "MED19--AP003721.2^MED19^ENSG00000156603.19" ; gene_name MED19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167199.5" ; havana_transcript "OTTHUMT00000492764.2" ; hgnc_id "HGNC:29600" ; level 2 ; orig_coord_info "chr11,57711963,57712179,-" ; protein_id "ENSP00000337340.4" ; tag upstream_ATG basic ; transcript_id "MED19--AP003721.2^ENST00000337672.9" ; transcript_name "MED19-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MED19--CD6 HAVANA gene 6878 24548 . + . FI_gene_label "CD6^ENSG00000013725.14" ; ID "MED19--CD6^CD6^ENSG00000013725.14" ; ccdsid "CCDS7999.1" ; exon_id "ENSE00002252032.1" ; exon_number 1 ; gene_id "MED19--CD6^CD6^ENSG00000013725.14" ; gene_name CD6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167823.2" ; havana_transcript "OTTHUMT00000396449.1" ; hgnc_id "HGNC:1691" ; level 2 ; orig_coord_info "chr11,60971866,60971914,+" ; protein_id "ENSP00000323280.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MED19--CD6^ENST00000313421.11" ; transcript_name "CD6-201" ; transcript_support_level 1 ; transcript_type protein_coding
MED19--CD6 HAVANA mRNA 6878 24548 . + . FI_gene_label "CD6^ENSG00000013725.14" ; ID "MED19--CD6^ENST00000313421.11" ; Parent "MED19--CD6^CD6^ENSG00000013725.14" ; ccdsid "CCDS7999.1" ; exon_id "ENSE00002252032.1" ; exon_number 1 ; gene_id "MED19--CD6^CD6^ENSG00000013725.14" ; gene_name CD6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167823.2" ; havana_transcript "OTTHUMT00000396449.1" ; hgnc_id "HGNC:1691" ; level 2 ; orig_coord_info "chr11,60971866,60971914,+" ; protein_id "ENSP00000323280.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MED19--CD6^ENST00000313421.11" ; transcript_name "CD6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MED19--CD6 HAVANA gene 1109 3877 . + . FI_gene_label "MED19^ENSG00000156603.19" ; ID "MED19--CD6^MED19^ENSG00000156603.19" ; exon_id "ENSE00003846435.1" ; exon_number 1 ; gene_id "MED19--CD6^MED19^ENSG00000156603.19" ; gene_name MED19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167199.5" ; havana_transcript "OTTHUMT00000492764.2" ; hgnc_id "HGNC:29600" ; level 2 ; orig_coord_info "chr11,57711963,57712179,-" ; protein_id "ENSP00000337340.4" ; tag upstream_ATG basic ; transcript_id "MED19--CD6^ENST00000337672.9" ; transcript_name "MED19-201" ; transcript_support_level 1 ; transcript_type protein_coding
MED19--CD6 HAVANA mRNA 1109 3877 . + . FI_gene_label "MED19^ENSG00000156603.19" ; ID "MED19--CD6^ENST00000337672.9" ; Parent "MED19--CD6^MED19^ENSG00000156603.19" ; exon_id "ENSE00003846435.1" ; exon_number 1 ; gene_id "MED19--CD6^MED19^ENSG00000156603.19" ; gene_name MED19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167199.5" ; havana_transcript "OTTHUMT00000492764.2" ; hgnc_id "HGNC:29600" ; level 2 ; orig_coord_info "chr11,57711963,57712179,-" ; protein_id "ENSP00000337340.4" ; tag upstream_ATG basic ; transcript_id "MED19--CD6^ENST00000337672.9" ; transcript_name "MED19-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRPL48--FAM86C1P HAVANA gene 1003 16830 . + . FI_gene_label "MRPL48^ENSG00000175581.14" ; ID "MRPL48--FAM86C1P^MRPL48^ENSG00000175581.14" ; ccdsid "CCDS44676.1" ; exon_id "ENSE00002308823.2" ; exon_number 1 ; gene_id "MRPL48--FAM86C1P^MRPL48^ENSG00000175581.14" ; gene_name MRPL48 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168048.5" ; havana_transcript "OTTHUMT00000397733.2" ; hgnc_id "HGNC:16653" ; level 2 ; orig_coord_info "chr11,73787972,73787992,+" ; protein_id "ENSP00000308717.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MRPL48--FAM86C1P^ENST00000310614.12" ; transcript_name "MRPL48-201" ; transcript_support_level 1 ; transcript_type protein_coding
MRPL48--FAM86C1P HAVANA mRNA 1003 16830 . + . FI_gene_label "MRPL48^ENSG00000175581.14" ; ID "MRPL48--FAM86C1P^ENST00000310614.12" ; Parent "MRPL48--FAM86C1P^MRPL48^ENSG00000175581.14" ; ccdsid "CCDS44676.1" ; exon_id "ENSE00002308823.2" ; exon_number 1 ; gene_id "MRPL48--FAM86C1P^MRPL48^ENSG00000175581.14" ; gene_name MRPL48 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168048.5" ; havana_transcript "OTTHUMT00000397733.2" ; hgnc_id "HGNC:16653" ; level 2 ; orig_coord_info "chr11,73787972,73787992,+" ; protein_id "ENSP00000308717.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MRPL48--FAM86C1P^ENST00000310614.12" ; transcript_name "MRPL48-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PDLIM5--AC093815.1 HAVANA gene 1086 32646 . + . FI_gene_label "PDLIM5^ENSG00000163110.15" ; ID "PDLIM5--AC093815.1^PDLIM5^ENSG00000163110.15" ; ccdsid "CCDS3641.1" ; exon_id "ENSE00003692320.1" ; exon_number 2 ; gene_id "PDLIM5--AC093815.1^PDLIM5^ENSG00000163110.15" ; gene_name PDLIM5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130973.11" ; havana_transcript "OTTHUMT00000253586.2" ; hgnc_id "HGNC:17468" ; level 2 ; orig_coord_info "chr4,94455289,94455384,+" ; protein_id "ENSP00000321746.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "PDLIM5--AC093815.1^ENST00000317968.9" ; transcript_name "PDLIM5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDLIM5--AC093815.1 HAVANA mRNA 1086 32646 . + . FI_gene_label "PDLIM5^ENSG00000163110.15" ; ID "PDLIM5--AC093815.1^ENST00000317968.9" ; Parent "PDLIM5--AC093815.1^PDLIM5^ENSG00000163110.15" ; ccdsid "CCDS3641.1" ; exon_id "ENSE00003692320.1" ; exon_number 2 ; gene_id "PDLIM5--AC093815.1^PDLIM5^ENSG00000163110.15" ; gene_name PDLIM5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130973.11" ; havana_transcript "OTTHUMT00000253586.2" ; hgnc_id "HGNC:17468" ; level 2 ; orig_coord_info "chr4,94455289,94455384,+" ; protein_id "ENSP00000321746.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "PDLIM5--AC093815.1^ENST00000317968.9" ; transcript_name "PDLIM5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDLIM5--UGT8 HAVANA gene 35688 46035 . + . FI_gene_label "UGT8^ENSG00000174607.11" ; ID "PDLIM5--UGT8^UGT8^ENSG00000174607.11" ; ccdsid "CCDS3705.1" ; exon_id "ENSE00001253585.4" ; exon_number 2 ; gene_id "PDLIM5--UGT8^UGT8^ENSG00000174607.11" ; gene_name UGT8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132915.5" ; havana_transcript "OTTHUMT00000256426.3" ; hgnc_id "HGNC:12555" ; level 2 ; orig_coord_info "chr4,114622881,114623702,+" ; protein_id "ENSP00000311648.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PDLIM5--UGT8^ENST00000310836.11" ; transcript_name "UGT8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDLIM5--UGT8 HAVANA mRNA 35688 46035 . + . FI_gene_label "UGT8^ENSG00000174607.11" ; ID "PDLIM5--UGT8^ENST00000310836.11" ; Parent "PDLIM5--UGT8^UGT8^ENSG00000174607.11" ; ccdsid "CCDS3705.1" ; exon_id "ENSE00001253585.4" ; exon_number 2 ; gene_id "PDLIM5--UGT8^UGT8^ENSG00000174607.11" ; gene_name UGT8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132915.5" ; havana_transcript "OTTHUMT00000256426.3" ; hgnc_id "HGNC:12555" ; level 2 ; orig_coord_info "chr4,114622881,114623702,+" ; protein_id "ENSP00000311648.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PDLIM5--UGT8^ENST00000310836.11" ; transcript_name "UGT8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDLIM5--UGT8 HAVANA gene 1086 32646 . + . FI_gene_label "PDLIM5^ENSG00000163110.15" ; ID "PDLIM5--UGT8^PDLIM5^ENSG00000163110.15" ; ccdsid "CCDS3641.1" ; exon_id "ENSE00003692320.1" ; exon_number 2 ; gene_id "PDLIM5--UGT8^PDLIM5^ENSG00000163110.15" ; gene_name PDLIM5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130973.11" ; havana_transcript "OTTHUMT00000253586.2" ; hgnc_id "HGNC:17468" ; level 2 ; orig_coord_info "chr4,94455289,94455384,+" ; protein_id "ENSP00000321746.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "PDLIM5--UGT8^ENST00000317968.9" ; transcript_name "PDLIM5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDLIM5--UGT8 HAVANA mRNA 1086 32646 . + . FI_gene_label "PDLIM5^ENSG00000163110.15" ; ID "PDLIM5--UGT8^ENST00000317968.9" ; Parent "PDLIM5--UGT8^PDLIM5^ENSG00000163110.15" ; ccdsid "CCDS3641.1" ; exon_id "ENSE00003692320.1" ; exon_number 2 ; gene_id "PDLIM5--UGT8^PDLIM5^ENSG00000163110.15" ; gene_name PDLIM5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130973.11" ; havana_transcript "OTTHUMT00000253586.2" ; hgnc_id "HGNC:17468" ; level 2 ; orig_coord_info "chr4,94455289,94455384,+" ; protein_id "ENSP00000321746.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "PDLIM5--UGT8^ENST00000317968.9" ; transcript_name "PDLIM5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNU13--LLPH HAVANA gene 4331 9276 . + . FI_gene_label "SNU13^ENSG00000100138.15" ; ID "SNU13--LLPH^SNU13^ENSG00000100138.15" ; ccdsid "CCDS14022.1" ; exon_id "ENSE00001388935.4" ; exon_number 1 ; gene_id "SNU13--LLPH^SNU13^ENSG00000100138.15" ; gene_name SNU13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151189.9" ; havana_transcript "OTTHUMT00000321683.2" ; hgnc_id "HGNC:7819" ; level 2 ; orig_coord_info "chr22,41682356,41682358,-" ; protein_id "ENSP00000215956.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000215956.10" ; transcript_name "SNU13-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNU13--LLPH HAVANA mRNA 4331 9276 . + . FI_gene_label "SNU13^ENSG00000100138.15" ; ID "SNU13--LLPH^ENST00000215956.10" ; Parent "SNU13--LLPH^SNU13^ENSG00000100138.15" ; ccdsid "CCDS14022.1" ; exon_id "ENSE00001388935.4" ; exon_number 1 ; gene_id "SNU13--LLPH^SNU13^ENSG00000100138.15" ; gene_name SNU13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151189.9" ; havana_transcript "OTTHUMT00000321683.2" ; hgnc_id "HGNC:7819" ; level 2 ; orig_coord_info "chr22,41682356,41682358,-" ; protein_id "ENSP00000215956.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000215956.10" ; transcript_name "SNU13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNU13--LLPH HAVANA gene 13051 23027 . + . FI_gene_label "LLPH^ENSG00000139233.7" ; ID "SNU13--LLPH^LLPH^ENSG00000139233.7" ; ccdsid "CCDS8974.1" ; exon_id "ENSE00003592110.1" ; exon_number 2 ; gene_id "SNU13--LLPH^LLPH^ENSG00000139233.7" ; gene_name LLPH ; gene_type protein_coding ; havana_gene "OTTHUMG00000168959.4" ; havana_transcript "OTTHUMT00000401752.4" ; hgnc_id "HGNC:28229" ; level 2 ; orig_coord_info "chr12,66128896,66129106,-" ; protein_id "ENSP00000266604.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000266604.7" ; transcript_name "LLPH-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNU13--LLPH HAVANA mRNA 13051 23027 . + . FI_gene_label "LLPH^ENSG00000139233.7" ; ID "SNU13--LLPH^ENST00000266604.7" ; Parent "SNU13--LLPH^LLPH^ENSG00000139233.7" ; ccdsid "CCDS8974.1" ; exon_id "ENSE00003592110.1" ; exon_number 2 ; gene_id "SNU13--LLPH^LLPH^ENSG00000139233.7" ; gene_name LLPH ; gene_type protein_coding ; havana_gene "OTTHUMG00000168959.4" ; havana_transcript "OTTHUMT00000401752.4" ; hgnc_id "HGNC:28229" ; level 2 ; orig_coord_info "chr12,66128896,66129106,-" ; protein_id "ENSP00000266604.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000266604.7" ; transcript_name "LLPH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SP110--MTRNR2L12 HAVANA gene 3281 27964 . + . FI_gene_label "SP110^ENSG00000135899.19" ; ID "SP110--MTRNR2L12^SP110^ENSG00000135899.19" ; ccdsid "CCDS2475.1" ; exon_id "ENSE00003620921.1" ; exon_number 2 ; gene_id "SP110--MTRNR2L12^SP110^ENSG00000135899.19" ; gene_name SP110 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133204.6" ; havana_transcript "OTTHUMT00000332413.1" ; hgnc_id "HGNC:5401" ; level 2 ; orig_coord_info "chr2,230216781,230216927,-" ; protein_id "ENSP00000258381.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SP110--MTRNR2L12^ENST00000258381.11" ; transcript_name "SP110-201" ; transcript_support_level 2 ; transcript_type protein_coding
SP110--MTRNR2L12 HAVANA mRNA 3281 27964 . + . FI_gene_label "SP110^ENSG00000135899.19" ; ID "SP110--MTRNR2L12^ENST00000258381.11" ; Parent "SP110--MTRNR2L12^SP110^ENSG00000135899.19" ; ccdsid "CCDS2475.1" ; exon_id "ENSE00003620921.1" ; exon_number 2 ; gene_id "SP110--MTRNR2L12^SP110^ENSG00000135899.19" ; gene_name SP110 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133204.6" ; havana_transcript "OTTHUMT00000332413.1" ; hgnc_id "HGNC:5401" ; level 2 ; orig_coord_info "chr2,230216781,230216927,-" ; protein_id "ENSP00000258381.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SP110--MTRNR2L12^ENST00000258381.11" ; transcript_name "SP110-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SP110--MTRNR2L12 HAVANA gene 30965 32013 . + . FI_gene_label "MTRNR2L12^ENSG00000269028.3" ; ID "SP110--MTRNR2L12^MTRNR2L12^ENSG00000269028.3" ; exon_id "ENSE00002993977.3" ; exon_number 1 ; gene_id "SP110--MTRNR2L12^MTRNR2L12^ENSG00000269028.3" ; gene_name MTRNR2L12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000175726.3" ; havana_transcript "OTTHUMT00000430905.3" ; hgnc_id "HGNC:37169" ; level 2 ; orig_coord_info "chr3,96617202,96617273,-" ; protein_id "ENSP00000468991.1" ; tag not_best_in_genome_evidence basic appris_principal_1 ; transcript_id "SP110--MTRNR2L12^ENST00000600213.3" ; transcript_name "MTRNR2L12-201" ; transcript_support_level NA ; transcript_type protein_coding
SP110--MTRNR2L12 HAVANA mRNA 30965 32013 . + . FI_gene_label "MTRNR2L12^ENSG00000269028.3" ; ID "SP110--MTRNR2L12^ENST00000600213.3" ; Parent "SP110--MTRNR2L12^MTRNR2L12^ENSG00000269028.3" ; exon_id "ENSE00002993977.3" ; exon_number 1 ; gene_id "SP110--MTRNR2L12^MTRNR2L12^ENSG00000269028.3" ; gene_name MTRNR2L12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000175726.3" ; havana_transcript "OTTHUMT00000430905.3" ; hgnc_id "HGNC:37169" ; level 2 ; orig_coord_info "chr3,96617202,96617273,-" ; protein_id "ENSP00000468991.1" ; tag not_best_in_genome_evidence basic appris_principal_1 ; transcript_id "SP110--MTRNR2L12^ENST00000600213.3" ; transcript_name "MTRNR2L12-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
STIP1--CCDC88B ENSEMBL gene 26455 30250 . + . FI_gene_label "CCDC88B^ENSG00000168071.22" ; ID "STIP1--CCDC88B^CCDC88B^ENSG00000168071.22" ; exon_id "ENSE00003507728.1" ; exon_number 1 ; gene_id "STIP1--CCDC88B^CCDC88B^ENSG00000168071.22" ; gene_name CCDC88B ; gene_type protein_coding ; havana_gene "OTTHUMG00000045419.6" ; hgnc_id "HGNC:26757" ; level 3 ; orig_coord_info "chr11,64353726,64353813,+" ; protein_id "ENSP00000301897.4" ; tag basic ; transcript_id "STIP1--CCDC88B^ENST00000301897.5" ; transcript_name "CCDC88B-201" ; transcript_support_level 1 ; transcript_type protein_coding
STIP1--CCDC88B ENSEMBL mRNA 26455 30250 . + . FI_gene_label "CCDC88B^ENSG00000168071.22" ; ID "STIP1--CCDC88B^ENST00000301897.5" ; Parent "STIP1--CCDC88B^CCDC88B^ENSG00000168071.22" ; exon_id "ENSE00003507728.1" ; exon_number 1 ; gene_id "STIP1--CCDC88B^CCDC88B^ENSG00000168071.22" ; gene_name CCDC88B ; gene_type protein_coding ; havana_gene "OTTHUMG00000045419.6" ; hgnc_id "HGNC:26757" ; level 3 ; orig_coord_info "chr11,64353726,64353813,+" ; protein_id "ENSP00000301897.4" ; tag basic ; transcript_id "STIP1--CCDC88B^ENST00000301897.5" ; transcript_name "CCDC88B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STIP1--CCDC88B HAVANA gene 1900 12616 . + . FI_gene_label "STIP1^ENSG00000168439.17" ; ID "STIP1--CCDC88B^STIP1^ENSG00000168439.17" ; ccdsid "CCDS8058.1" ; exon_id "ENSE00001303761.3" ; exon_number 1 ; gene_id "STIP1--CCDC88B^STIP1^ENSG00000168439.17" ; gene_name STIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167789.6" ; havana_transcript "OTTHUMT00000396289.2" ; hgnc_id "HGNC:11387" ; level 2 ; orig_coord_info "chr11,64186262,64186270,+" ; protein_id "ENSP00000305958.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STIP1--CCDC88B^ENST00000305218.9" ; transcript_name "STIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STIP1--CCDC88B HAVANA mRNA 1900 12616 . + . FI_gene_label "STIP1^ENSG00000168439.17" ; ID "STIP1--CCDC88B^ENST00000305218.9" ; Parent "STIP1--CCDC88B^STIP1^ENSG00000168439.17" ; ccdsid "CCDS8058.1" ; exon_id "ENSE00001303761.3" ; exon_number 1 ; gene_id "STIP1--CCDC88B^STIP1^ENSG00000168439.17" ; gene_name STIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167789.6" ; havana_transcript "OTTHUMT00000396289.2" ; hgnc_id "HGNC:11387" ; level 2 ; orig_coord_info "chr11,64186262,64186270,+" ; protein_id "ENSP00000305958.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STIP1--CCDC88B^ENST00000305218.9" ; transcript_name "STIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBP--ATXN3 HAVANA gene 1078 10356 . + . FI_gene_label "TBP^ENSG00000112592.14" ; ID "TBP--ATXN3^TBP^ENSG00000112592.14" ; ccdsid "CCDS5315.1" ; exon_id "ENSE00000854356.1" ; exon_number 2 ; gene_id "TBP--ATXN3^TBP^ENSG00000112592.14" ; gene_name TBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000016084.6" ; havana_transcript "OTTHUMT00000043271.2" ; hgnc_id "HGNC:11588" ; level 2 ; orig_coord_info "chr6,170557030,170557083,+" ; protein_id "ENSP00000230354.5" ; tag basic appris_principal_2 CCDS ; transcript_id "TBP--ATXN3^ENST00000230354.10" ; transcript_name "TBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBP--ATXN3 HAVANA mRNA 1078 10356 . + . FI_gene_label "TBP^ENSG00000112592.14" ; ID "TBP--ATXN3^ENST00000230354.10" ; Parent "TBP--ATXN3^TBP^ENSG00000112592.14" ; ccdsid "CCDS5315.1" ; exon_id "ENSE00000854356.1" ; exon_number 2 ; gene_id "TBP--ATXN3^TBP^ENSG00000112592.14" ; gene_name TBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000016084.6" ; havana_transcript "OTTHUMT00000043271.2" ; hgnc_id "HGNC:11588" ; level 2 ; orig_coord_info "chr6,170557030,170557083,+" ; protein_id "ENSP00000230354.5" ; tag basic appris_principal_2 CCDS ; transcript_id "TBP--ATXN3^ENST00000230354.10" ; transcript_name "TBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBP--ATXN3 HAVANA gene 13368 28517 . + . FI_gene_label "ATXN3^ENSG00000066427.24" ; ID "TBP--ATXN3^ATXN3^ENSG00000066427.24" ; ccdsid "CCDS32143.1" ; exon_id "ENSE00002073369.1" ; exon_number 1 ; gene_id "TBP--ATXN3^ATXN3^ENSG00000066427.24" ; gene_name ATXN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162212.16" ; havana_transcript "OTTHUMT00000367924.2" ; hgnc_id "HGNC:7106" ; level 2 ; orig_coord_info "chr14,92106529,92106552,-" ; protein_id "ENSP00000339110.6" ; tag basic CCDS ; transcript_id "TBP--ATXN3^ENST00000340660.10" ; transcript_name "ATXN3-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBP--ATXN3 HAVANA mRNA 13368 28517 . + . FI_gene_label "ATXN3^ENSG00000066427.24" ; ID "TBP--ATXN3^ENST00000340660.10" ; Parent "TBP--ATXN3^ATXN3^ENSG00000066427.24" ; ccdsid "CCDS32143.1" ; exon_id "ENSE00002073369.1" ; exon_number 1 ; gene_id "TBP--ATXN3^ATXN3^ENSG00000066427.24" ; gene_name ATXN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162212.16" ; havana_transcript "OTTHUMT00000367924.2" ; hgnc_id "HGNC:7106" ; level 2 ; orig_coord_info "chr14,92106529,92106552,-" ; protein_id "ENSP00000339110.6" ; tag basic CCDS ; transcript_id "TBP--ATXN3^ENST00000340660.10" ; transcript_name "ATXN3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VAMP7--AMD1P2 HAVANA gene 1031 10615 . + . FI_gene_label "VAMP7^ENSG00000124333.16" ; ID "VAMP7--AMD1P2^VAMP7^ENSG00000124333.16" ; ccdsid "CCDS55548.1" ; exon_id "ENSE00002096759.1" ; exon_number 2 ; gene_id "VAMP7--AMD1P2^VAMP7^ENSG00000124333.16" ; gene_name VAMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022679.3" ; havana_transcript "OTTHUMT00000058842.1" ; hgnc_id "HGNC:11486" ; level 2 ; orig_coord_info "chrX,155889467,155889612,+" ; protein_id "ENSP00000262640.6" ; tag basic CCDS ; transcript_id "VAMP7--AMD1P2^ENST00000262640.11" ; transcript_name "VAMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
VAMP7--AMD1P2 HAVANA mRNA 1031 10615 . + . FI_gene_label "VAMP7^ENSG00000124333.16" ; ID "VAMP7--AMD1P2^ENST00000262640.11" ; Parent "VAMP7--AMD1P2^VAMP7^ENSG00000124333.16" ; ccdsid "CCDS55548.1" ; exon_id "ENSE00002096759.1" ; exon_number 2 ; gene_id "VAMP7--AMD1P2^VAMP7^ENSG00000124333.16" ; gene_name VAMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022679.3" ; havana_transcript "OTTHUMT00000058842.1" ; hgnc_id "HGNC:11486" ; level 2 ; orig_coord_info "chrX,155889467,155889612,+" ; protein_id "ENSP00000262640.6" ; tag basic CCDS ; transcript_id "VAMP7--AMD1P2^ENST00000262640.11" ; transcript_name "VAMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VAMP7--DPH3P2 HAVANA gene 1031 10615 . + . FI_gene_label "VAMP7^ENSG00000124333.16" ; ID "VAMP7--DPH3P2^VAMP7^ENSG00000124333.16" ; ccdsid "CCDS55548.1" ; exon_id "ENSE00002096759.1" ; exon_number 2 ; gene_id "VAMP7--DPH3P2^VAMP7^ENSG00000124333.16" ; gene_name VAMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022679.3" ; havana_transcript "OTTHUMT00000058842.1" ; hgnc_id "HGNC:11486" ; level 2 ; orig_coord_info "chrX,155889467,155889612,+" ; protein_id "ENSP00000262640.6" ; tag basic CCDS ; transcript_id "VAMP7--DPH3P2^ENST00000262640.11" ; transcript_name "VAMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
VAMP7--DPH3P2 HAVANA mRNA 1031 10615 . + . FI_gene_label "VAMP7^ENSG00000124333.16" ; ID "VAMP7--DPH3P2^ENST00000262640.11" ; Parent "VAMP7--DPH3P2^VAMP7^ENSG00000124333.16" ; ccdsid "CCDS55548.1" ; exon_id "ENSE00002096759.1" ; exon_number 2 ; gene_id "VAMP7--DPH3P2^VAMP7^ENSG00000124333.16" ; gene_name VAMP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022679.3" ; havana_transcript "OTTHUMT00000058842.1" ; hgnc_id "HGNC:11486" ; level 2 ; orig_coord_info "chrX,155889467,155889612,+" ; protein_id "ENSP00000262640.6" ; tag basic CCDS ; transcript_id "VAMP7--DPH3P2^ENST00000262640.11" ; transcript_name "VAMP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC243829.5--AC233699.1 HAVANA gene 5248 14222 . + . FI_gene_label "AC233699.1^ENSG00000261499.2" ; ID "AC243829.5--AC233699.1^AC233699.1^ENSG00000261499.2" ; exon_id "ENSE00002600750.2" ; exon_number 1 ; gene_id "AC243829.5--AC233699.1^AC233699.1^ENSG00000261499.2" ; gene_name "AC233699.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188425.1" ; havana_transcript "OTTHUMT00000477176.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr17,36274191,36274283,+" ; tag basic ; transcript_id "AC243829.5--AC233699.1^ENST00000569955.2" ; transcript_name "AC233699.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AC243829.5--AC233699.1 HAVANA RNA 5248 14222 . + . FI_gene_label "AC233699.1^ENSG00000261499.2" ; ID "AC243829.5--AC233699.1^ENST00000569955.2" ; Parent "AC243829.5--AC233699.1^AC233699.1^ENSG00000261499.2" ; exon_id "ENSE00002600750.2" ; exon_number 1 ; gene_id "AC243829.5--AC233699.1^AC233699.1^ENSG00000261499.2" ; gene_name "AC233699.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188425.1" ; havana_transcript "OTTHUMT00000477176.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr17,36274191,36274283,+" ; tag basic ; transcript_id "AC243829.5--AC233699.1^ENST00000569955.2" ; transcript_name "AC233699.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
AC243829.5--AC233699.1 HAVANA gene 1001 2247 . + . FI_gene_label "AC243829.5^ENSG00000278097.1" ; ID "AC243829.5--AC233699.1^AC243829.5^ENSG00000278097.1" ; exon_id "ENSE00002266549.2" ; exon_number 1 ; gene_id "AC243829.5--AC233699.1^AC243829.5^ENSG00000278097.1" ; gene_name "AC243829.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000188421.1" ; havana_transcript "OTTHUMT00000477171.1" ; level 2 ; orig_coord_info "chr17,36226685,36226807,-" ; tag basic ; transcript_id "AC243829.5--AC233699.1^ENST00000578447.2" ; transcript_name "AC243829.5-201" ; transcript_support_level 5 ; transcript_type lncRNA
AC243829.5--AC233699.1 HAVANA RNA 1001 2247 . + . FI_gene_label "AC243829.5^ENSG00000278097.1" ; ID "AC243829.5--AC233699.1^ENST00000578447.2" ; Parent "AC243829.5--AC233699.1^AC243829.5^ENSG00000278097.1" ; exon_id "ENSE00002266549.2" ; exon_number 1 ; gene_id "AC243829.5--AC233699.1^AC243829.5^ENSG00000278097.1" ; gene_name "AC243829.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000188421.1" ; havana_transcript "OTTHUMT00000477171.1" ; level 2 ; orig_coord_info "chr17,36226685,36226807,-" ; tag basic ; transcript_id "AC243829.5--AC233699.1^ENST00000578447.2" ; transcript_name "AC243829.5-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
BTBD9--BAGE2 HAVANA gene 28593 40796 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "BTBD9--BAGE2^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "BTBD9--BAGE2^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "BTBD9--BAGE2^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
BTBD9--BAGE2 HAVANA RNA 28593 40796 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "BTBD9--BAGE2^ENST00000470054.5" ; Parent "BTBD9--BAGE2^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "BTBD9--BAGE2^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "BTBD9--BAGE2^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
BTBD9--CU104787.1 HAVANA gene 28538 29825 . + . FI_gene_label "CU104787.1^ENSG00000279973.2" ; ID "BTBD9--CU104787.1^CU104787.1^ENSG00000279973.2" ; exon_id "ENSE00003758096.2" ; exon_number 1 ; gene_id "BTBD9--CU104787.1^CU104787.1^ENSG00000279973.2" ; gene_name "CU104787.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192006.1" ; havana_transcript "OTTHUMT00000491988.1" ; level 2 ; orig_coord_info "chr22,11066418,11066515,+" ; tag basic ; transcript_id "BTBD9--CU104787.1^ENST00000624155.2" ; transcript_name "CU104787.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
BTBD9--CU104787.1 HAVANA RNA 28538 29825 . + . FI_gene_label "CU104787.1^ENSG00000279973.2" ; ID "BTBD9--CU104787.1^ENST00000624155.2" ; Parent "BTBD9--CU104787.1^CU104787.1^ENSG00000279973.2" ; exon_id "ENSE00003758096.2" ; exon_number 1 ; gene_id "BTBD9--CU104787.1^CU104787.1^ENSG00000279973.2" ; gene_name "CU104787.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192006.1" ; havana_transcript "OTTHUMT00000491988.1" ; level 2 ; orig_coord_info "chr22,11066418,11066515,+" ; tag basic ; transcript_id "BTBD9--CU104787.1^ENST00000624155.2" ; transcript_name "CU104787.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
DCAF12--AL354989.2 HAVANA gene 16468 18007 . + . FI_gene_label "AL354989.2^ENSG00000239392.2" ; ID "DCAF12--AL354989.2^AL354989.2^ENSG00000239392.2" ; exon_id "ENSE00001682930.2" ; exon_number 1 ; gene_id "DCAF12--AL354989.2^AL354989.2^ENSG00000239392.2" ; gene_name "AL354989.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000000425.2" ; havana_transcript "OTTHUMT00000001069.2" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,34133157,34134696,-" ; tag pseudo_consens basic ; transcript_id "DCAF12--AL354989.2^ENST00000435838.2" ; transcript_name "AL354989.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
DCAF12--AL354989.2 HAVANA RNA 16468 18007 . + . FI_gene_label "AL354989.2^ENSG00000239392.2" ; ID "DCAF12--AL354989.2^ENST00000435838.2" ; Parent "DCAF12--AL354989.2^AL354989.2^ENSG00000239392.2" ; exon_id "ENSE00001682930.2" ; exon_number 1 ; gene_id "DCAF12--AL354989.2^AL354989.2^ENSG00000239392.2" ; gene_name "AL354989.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000000425.2" ; havana_transcript "OTTHUMT00000001069.2" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,34133157,34134696,-" ; tag pseudo_consens basic ; transcript_id "DCAF12--AL354989.2^ENST00000435838.2" ; transcript_name "AL354989.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
IFT74--LINC01241 HAVANA gene 33935 43275 . + . FI_gene_label "LINC01241^ENSG00000236306.3" ; ID "IFT74--LINC01241^LINC01241^ENSG00000236306.3" ; exon_id "ENSE00001750237.1" ; exon_number 1 ; gene_id "IFT74--LINC01241^LINC01241^ENSG00000236306.3" ; gene_name LINC01241 ; gene_type lncRNA ; havana_gene "OTTHUMG00000019705.8" ; havana_transcript "OTTHUMT00000051953.2" ; hgnc_id "HGNC:49804" ; level 1 ; orig_coord_info "chr9,25780056,25780168,+" ; tag basic exp_conf ; transcript_id "IFT74--LINC01241^ENST00000423326.2" ; transcript_name "LINC01241-201" ; transcript_support_level 1 ; transcript_type lncRNA
IFT74--LINC01241 HAVANA RNA 33935 43275 . + . FI_gene_label "LINC01241^ENSG00000236306.3" ; ID "IFT74--LINC01241^ENST00000423326.2" ; Parent "IFT74--LINC01241^LINC01241^ENSG00000236306.3" ; exon_id "ENSE00001750237.1" ; exon_number 1 ; gene_id "IFT74--LINC01241^LINC01241^ENSG00000236306.3" ; gene_name LINC01241 ; gene_type lncRNA ; havana_gene "OTTHUMG00000019705.8" ; havana_transcript "OTTHUMT00000051953.2" ; hgnc_id "HGNC:49804" ; level 1 ; orig_coord_info "chr9,25780056,25780168,+" ; tag basic exp_conf ; transcript_id "IFT74--LINC01241^ENST00000423326.2" ; transcript_name "LINC01241-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
MED19--AC024405.2 HAVANA gene 6878 15586 . + . FI_gene_label "AC024405.2^ENSG00000254840.1" ; ID "MED19--AC024405.2^AC024405.2^ENSG00000254840.1" ; exon_id "ENSE00002141139.1" ; exon_number 1 ; gene_id "MED19--AC024405.2^AC024405.2^ENSG00000254840.1" ; gene_name "AC024405.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000166693.2" ; havana_transcript "OTTHUMT00000391116.1" ; level 2 ; orig_coord_info "chr11,50307681,50307727,+" ; tag basic ; transcript_id "MED19--AC024405.2^ENST00000528459.1" ; transcript_name "AC024405.2-201" ; transcript_support_level 5 ; transcript_type processed_transcript
MED19--AC024405.2 HAVANA RNA 6878 15586 . + . FI_gene_label "AC024405.2^ENSG00000254840.1" ; ID "MED19--AC024405.2^ENST00000528459.1" ; Parent "MED19--AC024405.2^AC024405.2^ENSG00000254840.1" ; exon_id "ENSE00002141139.1" ; exon_number 1 ; gene_id "MED19--AC024405.2^AC024405.2^ENSG00000254840.1" ; gene_name "AC024405.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000166693.2" ; havana_transcript "OTTHUMT00000391116.1" ; level 2 ; orig_coord_info "chr11,50307681,50307727,+" ; tag basic ; transcript_id "MED19--AC024405.2^ENST00000528459.1" ; transcript_name "AC024405.2-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
MED19--AP003721.2 HAVANA gene 7223 9958 . + . FI_gene_label "AP003721.2^ENSG00000256733.2" ; ID "MED19--AP003721.2^AP003721.2^ENSG00000256733.2" ; exon_id "ENSE00002206045.1" ; exon_number 1 ; gene_id "MED19--AP003721.2^AP003721.2^ENSG00000256733.2" ; gene_name "AP003721.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000167824.3" ; havana_transcript "OTTHUMT00000396464.1" ; level 2 ; orig_coord_info "chr11,61055737,61055793,+" ; tag basic ; transcript_id "MED19--AP003721.2^ENST00000536495.1" ; transcript_name "AP003721.2-203" ; transcript_support_level 3 ; transcript_type lncRNA
MED19--AP003721.2 HAVANA RNA 7223 9958 . + . FI_gene_label "AP003721.2^ENSG00000256733.2" ; ID "MED19--AP003721.2^ENST00000536495.1" ; Parent "MED19--AP003721.2^AP003721.2^ENSG00000256733.2" ; exon_id "ENSE00002206045.1" ; exon_number 1 ; gene_id "MED19--AP003721.2^AP003721.2^ENSG00000256733.2" ; gene_name "AP003721.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000167824.3" ; havana_transcript "OTTHUMT00000396464.1" ; level 2 ; orig_coord_info "chr11,61055737,61055793,+" ; tag basic ; transcript_id "MED19--AP003721.2^ENST00000536495.1" ; transcript_name "AP003721.2-203" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
MRPL48--FAM86C1P HAVANA gene 19831 29108 . + . FI_gene_label "FAM86C1P^ENSG00000158483.17" ; ID "MRPL48--FAM86C1P^FAM86C1P^ENSG00000158483.17" ; exon_id "ENSE00002154412.1" ; exon_number 1 ; gene_id "MRPL48--FAM86C1P^FAM86C1P^ENSG00000158483.17" ; gene_name FAM86C1P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000160552.6" ; havana_transcript "OTTHUMT00000361119.3" ; hgnc_id "HGNC:25561" ; level 2 ; orig_coord_info "chr11,71787510,71787632,+" ; tag basic ; transcript_id "MRPL48--FAM86C1P^ENST00000346333.10" ; transcript_name "FAM86C1P-201" ; transcript_support_level 1 ; transcript_type processed_transcript
MRPL48--FAM86C1P HAVANA RNA 19831 29108 . + . FI_gene_label "FAM86C1P^ENSG00000158483.17" ; ID "MRPL48--FAM86C1P^ENST00000346333.10" ; Parent "MRPL48--FAM86C1P^FAM86C1P^ENSG00000158483.17" ; exon_id "ENSE00002154412.1" ; exon_number 1 ; gene_id "MRPL48--FAM86C1P^FAM86C1P^ENSG00000158483.17" ; gene_name FAM86C1P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000160552.6" ; havana_transcript "OTTHUMT00000361119.3" ; hgnc_id "HGNC:25561" ; level 2 ; orig_coord_info "chr11,71787510,71787632,+" ; tag basic ; transcript_id "MRPL48--FAM86C1P^ENST00000346333.10" ; transcript_name "FAM86C1P-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
PDLIM5--AC093815.1 HAVANA gene 35651 35938 . + . FI_gene_label "AC093815.1^ENSG00000248716.2" ; ID "PDLIM5--AC093815.1^AC093815.1^ENSG00000248716.2" ; exon_id "ENSE00002072353.1" ; exon_number 1 ; gene_id "PDLIM5--AC093815.1^AC093815.1^ENSG00000248716.2" ; gene_name "AC093815.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000161082.2" ; havana_transcript "OTTHUMT00000363684.2" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr4,114103938,114103980,+" ; tag basic ; transcript_id "PDLIM5--AC093815.1^ENST00000508637.2" ; transcript_name "AC093815.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
PDLIM5--AC093815.1 HAVANA RNA 35651 35938 . + . FI_gene_label "AC093815.1^ENSG00000248716.2" ; ID "PDLIM5--AC093815.1^ENST00000508637.2" ; Parent "PDLIM5--AC093815.1^AC093815.1^ENSG00000248716.2" ; exon_id "ENSE00002072353.1" ; exon_number 1 ; gene_id "PDLIM5--AC093815.1^AC093815.1^ENSG00000248716.2" ; gene_name "AC093815.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000161082.2" ; havana_transcript "OTTHUMT00000363684.2" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr4,114103938,114103980,+" ; tag basic ; transcript_id "PDLIM5--AC093815.1^ENST00000508637.2" ; transcript_name "AC093815.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
VAMP7--AMD1P2 HAVANA gene 13616 14607 . + . FI_gene_label "AMD1P2^ENSG00000237801.6" ; ID "VAMP7--AMD1P2^AMD1P2^ENSG00000237801.6" ; exon_id "ENSE00001527118.2" ; exon_number 1 ; gene_id "VAMP7--AMD1P2^AMD1P2^ENSG00000237801.6" ; gene_name AMD1P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000022673.2" ; havana_transcript "OTTHUMT00000058816.2" ; hgnc_id "HGNC:460" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chrX,155828585,155829576,-" ; tag pseudo_consens basic ; transcript_id "VAMP7--AMD1P2^ENST00000412936.6" ; transcript_name "AMD1P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
VAMP7--AMD1P2 HAVANA RNA 13616 14607 . + . FI_gene_label "AMD1P2^ENSG00000237801.6" ; ID "VAMP7--AMD1P2^ENST00000412936.6" ; Parent "VAMP7--AMD1P2^AMD1P2^ENSG00000237801.6" ; exon_id "ENSE00001527118.2" ; exon_number 1 ; gene_id "VAMP7--AMD1P2^AMD1P2^ENSG00000237801.6" ; gene_name AMD1P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000022673.2" ; havana_transcript "OTTHUMT00000058816.2" ; hgnc_id "HGNC:460" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chrX,155828585,155829576,-" ; tag pseudo_consens basic ; transcript_id "VAMP7--AMD1P2^ENST00000412936.6" ; transcript_name "AMD1P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
VAMP7--DPH3P2 HAVANA gene 13616 13865 . + . FI_gene_label "DPH3P2^ENSG00000237040.6" ; ID "VAMP7--DPH3P2^DPH3P2^ENSG00000237040.6" ; exon_id "ENSE00001793131.1" ; exon_number 1 ; gene_id "VAMP7--DPH3P2^DPH3P2^ENSG00000237040.6" ; gene_name DPH3P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000022680.1" ; havana_transcript "OTTHUMT00000058848.1" ; hgnc_id "HGNC:38719" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chrX,155875636,155875885,+" ; tag pseudo_consens basic ; transcript_id "VAMP7--DPH3P2^ENST00000422618.6" ; transcript_name "DPH3P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
VAMP7--DPH3P2 HAVANA RNA 13616 13865 . + . FI_gene_label "DPH3P2^ENSG00000237040.6" ; ID "VAMP7--DPH3P2^ENST00000422618.6" ; Parent "VAMP7--DPH3P2^DPH3P2^ENSG00000237040.6" ; exon_id "ENSE00001793131.1" ; exon_number 1 ; gene_id "VAMP7--DPH3P2^DPH3P2^ENSG00000237040.6" ; gene_name DPH3P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000022680.1" ; havana_transcript "OTTHUMT00000058848.1" ; hgnc_id "HGNC:38719" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chrX,155875636,155875885,+" ; tag pseudo_consens basic ; transcript_id "VAMP7--DPH3P2^ENST00000422618.6" ; transcript_name "DPH3P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
538 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1185 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 49 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed