Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bKP-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bKP-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:29:50.244 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:29:50 GMT 2026] MarkDuplicates --INPUT 659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bKP-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bKP-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:29:50 GMT 2026] Executing as ?@nf-6fff9613254c9acad79c3268187a01a5-c982b-hrx25 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:29:50 MarkDuplicates Start of doWork freeMemory: 105827536; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:29:50 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:29:50 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:29:54 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,313,868
INFO 2026-06-08 08:29:54 MarkDuplicates Tracking 2184 as yet unmatched pairs. 249 records in RAM.
INFO 2026-06-08 08:29:56 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,815,755
INFO 2026-06-08 08:29:56 MarkDuplicates Tracking 4333 as yet unmatched pairs. 404 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,640,054
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 6014 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:10,101,174
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 8082 as yet unmatched pairs. 165 records in RAM.
INFO 2026-06-08 08:30:02 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:11,974,758
INFO 2026-06-08 08:30:02 MarkDuplicates Tracking 9937 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:30:03 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:15,936,059
INFO 2026-06-08 08:30:03 MarkDuplicates Tracking 12050 as yet unmatched pairs. 325 records in RAM.
INFO 2026-06-08 08:30:05 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:19,113,753
INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 13767 as yet unmatched pairs. 226 records in RAM.
INFO 2026-06-08 08:30:06 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:20,744,816
INFO 2026-06-08 08:30:06 MarkDuplicates Tracking 15664 as yet unmatched pairs. 239 records in RAM.
INFO 2026-06-08 08:30:09 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:21,887,479
INFO 2026-06-08 08:30:09 MarkDuplicates Tracking 17661 as yet unmatched pairs. 273 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:23,053,798
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 19643 as yet unmatched pairs. 300 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:24,929,841
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 21191 as yet unmatched pairs. 44 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:26,780,428
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 23121 as yet unmatched pairs. 127 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:28,269,210
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 24940 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:31,915,964
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 28177 as yet unmatched pairs. 1485 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:32,826,264
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 28621 as yet unmatched pairs. 84 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:35,749,478
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 30643 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:39,250,009
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 32607 as yet unmatched pairs. 312 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:40,758,167
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 34285 as yet unmatched pairs. 197 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:43,442,956
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 36139 as yet unmatched pairs. 187 records in RAM.
INFO 2026-06-08 08:30:28 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:45,515,767
INFO 2026-06-08 08:30:28 MarkDuplicates Tracking 40527 as yet unmatched pairs. 2766 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:50,567,114
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 39690 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:54,785,986
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 41485 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:30:32 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:66,847,507
INFO 2026-06-08 08:30:32 MarkDuplicates Tracking 43260 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:84,495,385
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 44950 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:89,120,223
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 47835 as yet unmatched pairs. 1270 records in RAM.
INFO 2026-06-08 08:30:39 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:94,530,483
INFO 2026-06-08 08:30:39 MarkDuplicates Tracking 48431 as yet unmatched pairs. 165 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:109,280,200
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 49966 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:112,521,922
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 51897 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-08 08:30:43 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:114,716,083
INFO 2026-06-08 08:30:43 MarkDuplicates Tracking 53590 as yet unmatched pairs. 36 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:119,803,119
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 56246 as yet unmatched pairs. 955 records in RAM.
INFO 2026-06-08 08:30:46 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:144,429,841
INFO 2026-06-08 08:30:46 MarkDuplicates Tracking 56873 as yet unmatched pairs. 214 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:147,936,664
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 57857 as yet unmatched pairs. 203 records in RAM.
INFO 2026-06-08 08:30:49 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:149,832,817
INFO 2026-06-08 08:30:49 MarkDuplicates Tracking 62659 as yet unmatched pairs. 4102 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,442
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 59885 as yet unmatched pairs. 52 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:150,226,781
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 61613 as yet unmatched pairs. 645 records in RAM.
INFO 2026-06-08 08:30:54 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:151,166,338
INFO 2026-06-08 08:30:54 MarkDuplicates Tracking 62945 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 08:30:55 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:153,662,774
INFO 2026-06-08 08:30:55 MarkDuplicates Tracking 65140 as yet unmatched pairs. 351 records in RAM.
INFO 2026-06-08 08:30:57 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:154,172,944
INFO 2026-06-08 08:30:57 MarkDuplicates Tracking 70656 as yet unmatched pairs. 4146 records in RAM.
INFO 2026-06-08 08:30:59 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:154,602,375
INFO 2026-06-08 08:30:59 MarkDuplicates Tracking 68909 as yet unmatched pairs. 641 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:155,189,472
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 70441 as yet unmatched pairs. 364 records in RAM.
INFO 2026-06-08 08:31:03 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:155,660,558
INFO 2026-06-08 08:31:03 MarkDuplicates Tracking 71912 as yet unmatched pairs. 368 records in RAM.
INFO 2026-06-08 08:31:04 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,932
INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 77734 as yet unmatched pairs. 4160 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:156,939,735
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 75655 as yet unmatched pairs. 72 records in RAM.
INFO 2026-06-08 08:31:07 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:160,685,141
INFO 2026-06-08 08:31:07 MarkDuplicates Tracking 77455 as yet unmatched pairs. 139 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:161,766,416
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 79648 as yet unmatched pairs. 552 records in RAM.
INFO 2026-06-08 08:31:10 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:169,127,365
INFO 2026-06-08 08:31:10 MarkDuplicates Tracking 83398 as yet unmatched pairs. 2557 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:172,610,085
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 82496 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 08:31:13 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:181,089,607
INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 84471 as yet unmatched pairs. 185 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:186,320,298
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 86982 as yet unmatched pairs. 933 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:197,199,692
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 87774 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:31:18 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:202,148,648
INFO 2026-06-08 08:31:18 MarkDuplicates Tracking 89610 as yet unmatched pairs. 74 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:204,464,474
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 91882 as yet unmatched pairs. 575 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:206,939,365
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 94463 as yet unmatched pairs. 1404 records in RAM.
INFO 2026-06-08 08:31:22 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:212,686,758
INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 94919 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:31:24 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:222,687,611
INFO 2026-06-08 08:31:24 MarkDuplicates Tracking 97403 as yet unmatched pairs. 763 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:226,161,604
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 98464 as yet unmatched pairs. 42 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:230,255,154
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 100588 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:236,540,630
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 102788 as yet unmatched pairs. 263 records in RAM.
INFO 2026-06-08 08:31:31 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:244,863,908
INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 104646 as yet unmatched pairs. 343 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr2:8,860,633
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 106342 as yet unmatched pairs. 106000 records in RAM.
INFO 2026-06-08 08:31:35 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:15,595,149
INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 108673 as yet unmatched pairs. 108328 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:24,918,488
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 110073 as yet unmatched pairs. 109719 records in RAM.
INFO 2026-06-08 08:31:38 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:27,367,077
INFO 2026-06-08 08:31:38 MarkDuplicates Tracking 111702 as yet unmatched pairs. 111345 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr2:32,401,620
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 113689 as yet unmatched pairs. 113330 records in RAM.
INFO 2026-06-08 08:31:44 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 290332 as yet unmatched pairs. 103527 records in RAM.
INFO 2026-06-08 08:31:46 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,366
INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 917341 as yet unmatched pairs. 66523 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 970222 as yet unmatched pairs. 63330 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:38,585,657
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 1012921 as yet unmatched pairs. 59908 records in RAM.
INFO 2026-06-08 08:31:51 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:43,527,988
INFO 2026-06-08 08:31:51 MarkDuplicates Tracking 1011300 as yet unmatched pairs. 58284 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:47,379,933
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 1010363 as yet unmatched pairs. 57335 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:54,646,414
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 1007564 as yet unmatched pairs. 54533 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 3s. Last read position: chr2:60,953,952
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 1005107 as yet unmatched pairs. 52058 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:65,255,563
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 1003617 as yet unmatched pairs. 50561 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr2:71,178,670
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 1001515 as yet unmatched pairs. 48457 records in RAM.
INFO 2026-06-08 08:32:03 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:74,460,701
INFO 2026-06-08 08:32:03 MarkDuplicates Tracking 999677 as yet unmatched pairs. 46613 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:85,542,155
INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 998299 as yet unmatched pairs. 45231 records in RAM.
INFO 2026-06-08 08:32:06 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,261
INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 1002417 as yet unmatched pairs. 49344 records in RAM.
INFO 2026-06-08 08:32:07 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:95,927,231
INFO 2026-06-08 08:32:07 MarkDuplicates Tracking 995335 as yet unmatched pairs. 42251 records in RAM.
INFO 2026-06-08 08:32:09 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:97,818,645
INFO 2026-06-08 08:32:09 MarkDuplicates Tracking 993492 as yet unmatched pairs. 40405 records in RAM.
INFO 2026-06-08 08:32:11 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:106,096,784
INFO 2026-06-08 08:32:11 MarkDuplicates Tracking 991930 as yet unmatched pairs. 38839 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,468
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 990715 as yet unmatched pairs. 37624 records in RAM.
INFO 2026-06-08 08:32:14 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:111,164,133
INFO 2026-06-08 08:32:14 MarkDuplicates Tracking 989463 as yet unmatched pairs. 36368 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:117,829,340
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 988135 as yet unmatched pairs. 35034 records in RAM.
INFO 2026-06-08 08:32:17 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:130,182,414
INFO 2026-06-08 08:32:17 MarkDuplicates Tracking 986696 as yet unmatched pairs. 33590 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:144,398,319
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 984498 as yet unmatched pairs. 31375 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:159,282,717
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 982769 as yet unmatched pairs. 29623 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 2s. Last read position: chr2:170,929,391
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 981211 as yet unmatched pairs. 28063 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:174,572,310
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 979389 as yet unmatched pairs. 26236 records in RAM.
INFO 2026-06-08 08:32:27 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:181,485,988
INFO 2026-06-08 08:32:27 MarkDuplicates Tracking 977536 as yet unmatched pairs. 24382 records in RAM.
INFO 2026-06-08 08:32:29 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:189,006,228
INFO 2026-06-08 08:32:29 MarkDuplicates Tracking 976131 as yet unmatched pairs. 22975 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:190,982,473
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 975572 as yet unmatched pairs. 22416 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:197,494,656
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 973466 as yet unmatched pairs. 20303 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:203,107,833
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 970278 as yet unmatched pairs. 17108 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:213,296,080
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 968549 as yet unmatched pairs. 15371 records in RAM.
INFO 2026-06-08 08:32:37 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,124
INFO 2026-06-08 08:32:37 MarkDuplicates Tracking 967434 as yet unmatched pairs. 14253 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:218,217,514
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 966230 as yet unmatched pairs. 13048 records in RAM.
INFO 2026-06-08 08:32:41 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:219,250,473
INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 963527 as yet unmatched pairs. 10343 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:227,553,770
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 961349 as yet unmatched pairs. 8140 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:231,458,381
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 961206 as yet unmatched pairs. 7996 records in RAM.
INFO 2026-06-08 08:32:46 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:233,458,377
INFO 2026-06-08 08:32:46 MarkDuplicates Tracking 957904 as yet unmatched pairs. 4689 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:238,239,457
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 956296 as yet unmatched pairs. 3070 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:241,262,916
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 954701 as yet unmatched pairs. 1469 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr3:9,803,984
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 952135 as yet unmatched pairs. 52991 records in RAM.
INFO 2026-06-08 08:32:53 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:12,941,811
INFO 2026-06-08 08:32:53 MarkDuplicates Tracking 950467 as yet unmatched pairs. 51322 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:23,134,668
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 948408 as yet unmatched pairs. 49253 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:33,865,297
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 946743 as yet unmatched pairs. 47580 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:39,411,674
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 947221 as yet unmatched pairs. 48052 records in RAM.
INFO 2026-06-08 08:33:01 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 3s. Last read position: chr3:44,579,244
INFO 2026-06-08 08:33:01 MarkDuplicates Tracking 943006 as yet unmatched pairs. 43828 records in RAM.
INFO 2026-06-08 08:33:04 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 3s. Last read position: chr3:47,122,402
INFO 2026-06-08 08:33:04 MarkDuplicates Tracking 941522 as yet unmatched pairs. 42343 records in RAM.
INFO 2026-06-08 08:33:06 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:48,440,401
INFO 2026-06-08 08:33:06 MarkDuplicates Tracking 939722 as yet unmatched pairs. 40534 records in RAM.
INFO 2026-06-08 08:33:08 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:49,028,450
INFO 2026-06-08 08:33:08 MarkDuplicates Tracking 937650 as yet unmatched pairs. 38452 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:49,713,985
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 935447 as yet unmatched pairs. 36239 records in RAM.
INFO 2026-06-08 08:33:11 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:51,420,254
INFO 2026-06-08 08:33:11 MarkDuplicates Tracking 933645 as yet unmatched pairs. 34422 records in RAM.
INFO 2026-06-08 08:33:13 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:52,524,676
INFO 2026-06-08 08:33:13 MarkDuplicates Tracking 931738 as yet unmatched pairs. 32509 records in RAM.
INFO 2026-06-08 08:33:15 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:58,077,153
INFO 2026-06-08 08:33:15 MarkDuplicates Tracking 930169 as yet unmatched pairs. 30933 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:69,044,492
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 928429 as yet unmatched pairs. 29187 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr3:100,713,723
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 928172 as yet unmatched pairs. 28924 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:112,558,386
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 924914 as yet unmatched pairs. 25660 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:121,729,886
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 922840 as yet unmatched pairs. 23585 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:124,773,869
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 921152 as yet unmatched pairs. 21889 records in RAM.
INFO 2026-06-08 08:33:26 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:128,055,514
INFO 2026-06-08 08:33:26 MarkDuplicates Tracking 920542 as yet unmatched pairs. 21270 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:129,451,952
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 917370 as yet unmatched pairs. 18093 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:136,369,220
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 915499 as yet unmatched pairs. 16217 records in RAM.
INFO 2026-06-08 08:33:31 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr3:146,517,160
INFO 2026-06-08 08:33:31 MarkDuplicates Tracking 914228 as yet unmatched pairs. 14936 records in RAM.
INFO 2026-06-08 08:33:33 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:157,148,531
INFO 2026-06-08 08:33:33 MarkDuplicates Tracking 912282 as yet unmatched pairs. 12985 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:171,167,218
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 910394 as yet unmatched pairs. 11088 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:183,747,670
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 908505 as yet unmatched pairs. 9197 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:184,326,570
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 907030 as yet unmatched pairs. 7717 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:187,729,637
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 904848 as yet unmatched pairs. 5517 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:195,778,941
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 904024 as yet unmatched pairs. 4682 records in RAM.
INFO 2026-06-08 08:33:42 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,706
INFO 2026-06-08 08:33:42 MarkDuplicates Tracking 907666 as yet unmatched pairs. 8324 records in RAM.
INFO 2026-06-08 08:33:44 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:195,786,725
INFO 2026-06-08 08:33:44 MarkDuplicates Tracking 902793 as yet unmatched pairs. 3451 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:197,682,580
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 899720 as yet unmatched pairs. 371 records in RAM.
INFO 2026-06-08 08:33:47 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:1,717,150
INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 897945 as yet unmatched pairs. 27539 records in RAM.
INFO 2026-06-08 08:33:50 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr4:2,907,752
INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 895963 as yet unmatched pairs. 25555 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr4:7,772,803
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 894634 as yet unmatched pairs. 24221 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:20,704,694
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 892199 as yet unmatched pairs. 21784 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr4:39,291,731
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 890481 as yet unmatched pairs. 20059 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:48,543,837
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 888831 as yet unmatched pairs. 18389 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr4:57,110,093
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 887137 as yet unmatched pairs. 16688 records in RAM.
INFO 2026-06-08 08:34:00 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:75,012,804
INFO 2026-06-08 08:34:00 MarkDuplicates Tracking 885302 as yet unmatched pairs. 14852 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:77,056,278
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 883893 as yet unmatched pairs. 13438 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr4:86,751,096
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 881511 as yet unmatched pairs. 11051 records in RAM.
INFO 2026-06-08 08:34:05 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:102,305,073
INFO 2026-06-08 08:34:05 MarkDuplicates Tracking 880061 as yet unmatched pairs. 9595 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:112,618,720
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 878141 as yet unmatched pairs. 7670 records in RAM.
INFO 2026-06-08 08:34:08 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:127,823,567
INFO 2026-06-08 08:34:08 MarkDuplicates Tracking 876243 as yet unmatched pairs. 5757 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:145,902,789
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 874752 as yet unmatched pairs. 4258 records in RAM.
INFO 2026-06-08 08:34:11 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:155,710,934
INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 873165 as yet unmatched pairs. 2654 records in RAM.
INFO 2026-06-08 08:34:13 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:184,418,195
INFO 2026-06-08 08:34:13 MarkDuplicates Tracking 871496 as yet unmatched pairs. 978 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr5:1,280,268
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 869625 as yet unmatched pairs. 45929 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:14,293,053
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 867919 as yet unmatched pairs. 44215 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr5:32,599,106
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 866153 as yet unmatched pairs. 42442 records in RAM.
INFO 2026-06-08 08:34:21 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 2s. Last read position: chr5:40,834,232
INFO 2026-06-08 08:34:21 MarkDuplicates Tracking 865874 as yet unmatched pairs. 42159 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:58,459,012
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 862583 as yet unmatched pairs. 38865 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:70,219,936
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 861035 as yet unmatched pairs. 37314 records in RAM.
INFO 2026-06-08 08:34:25 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:75,350,852
INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 859476 as yet unmatched pairs. 35741 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:83,539,138
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 857746 as yet unmatched pairs. 34003 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:98,876,439
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 856117 as yet unmatched pairs. 32371 records in RAM.
INFO 2026-06-08 08:34:30 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:119,493,885
INFO 2026-06-08 08:34:30 MarkDuplicates Tracking 854543 as yet unmatched pairs. 30786 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:131,439,585
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 852404 as yet unmatched pairs. 28646 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:134,608,392
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 850783 as yet unmatched pairs. 27016 records in RAM.
INFO 2026-06-08 08:34:35 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:138,558,491
INFO 2026-06-08 08:34:35 MarkDuplicates Tracking 849230 as yet unmatched pairs. 25454 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:140,567,924
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 847475 as yet unmatched pairs. 23634 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:141,625,238
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 845568 as yet unmatched pairs. 21725 records in RAM.
INFO 2026-06-08 08:34:40 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:150,045,460
INFO 2026-06-08 08:34:40 MarkDuplicates Tracking 843501 as yet unmatched pairs. 19657 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,227
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 861482 as yet unmatched pairs. 37637 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,297
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 853427 as yet unmatched pairs. 29582 records in RAM.
INFO 2026-06-08 08:34:45 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:151,253,273
INFO 2026-06-08 08:34:45 MarkDuplicates Tracking 838106 as yet unmatched pairs. 14261 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:157,791,884
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 836178 as yet unmatched pairs. 12325 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr5:171,387,990
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 855747 as yet unmatched pairs. 31887 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,168
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 841522 as yet unmatched pairs. 17660 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:176,397,658
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 831461 as yet unmatched pairs. 7599 records in RAM.
INFO 2026-06-08 08:34:54 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:177,592,629
INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 829369 as yet unmatched pairs. 5502 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:179,724,732
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 827986 as yet unmatched pairs. 4118 records in RAM.
INFO 2026-06-08 08:34:57 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:179,879,723
INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 825591 as yet unmatched pairs. 1723 records in RAM.
INFO 2026-06-08 08:34:59 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr6:2,115,868
INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 824248 as yet unmatched pairs. 59727 records in RAM.
INFO 2026-06-08 08:35:01 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:7,231,528
INFO 2026-06-08 08:35:01 MarkDuplicates Tracking 821831 as yet unmatched pairs. 57300 records in RAM.
INFO 2026-06-08 08:35:03 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:13,616,484
INFO 2026-06-08 08:35:03 MarkDuplicates Tracking 820195 as yet unmatched pairs. 55659 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr6:25,969,325
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 818086 as yet unmatched pairs. 53537 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:26,158,333
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 817871 as yet unmatched pairs. 53321 records in RAM.
INFO 2026-06-08 08:35:07 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:26,598,382
INFO 2026-06-08 08:35:07 MarkDuplicates Tracking 814288 as yet unmatched pairs. 49738 records in RAM.
INFO 2026-06-08 08:35:09 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:27,810,122
INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 814436 as yet unmatched pairs. 49880 records in RAM.
INFO 2026-06-08 08:35:10 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:27,893,602
INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 811573 as yet unmatched pairs. 47016 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:29,945,519
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 809714 as yet unmatched pairs. 45156 records in RAM.
INFO 2026-06-08 08:35:15 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr6:30,730,521
INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 807181 as yet unmatched pairs. 42619 records in RAM.
INFO 2026-06-08 08:35:16 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:31,355,576
INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 805859 as yet unmatched pairs. 41295 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:31,639,500
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 803434 as yet unmatched pairs. 38858 records in RAM.
INFO 2026-06-08 08:35:19 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,226
INFO 2026-06-08 08:35:19 MarkDuplicates Tracking 801840 as yet unmatched pairs. 37260 records in RAM.
INFO 2026-06-08 08:35:21 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:32,197,343
INFO 2026-06-08 08:35:21 MarkDuplicates Tracking 799833 as yet unmatched pairs. 35249 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:32,848,672
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 800070 as yet unmatched pairs. 35481 records in RAM.
INFO 2026-06-08 08:35:24 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:33,201,178
INFO 2026-06-08 08:35:24 MarkDuplicates Tracking 796558 as yet unmatched pairs. 31966 records in RAM.
INFO 2026-06-08 08:35:26 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:33,414,254
INFO 2026-06-08 08:35:26 MarkDuplicates Tracking 795164 as yet unmatched pairs. 30572 records in RAM.
INFO 2026-06-08 08:35:27 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:35,017,842
INFO 2026-06-08 08:35:27 MarkDuplicates Tracking 792352 as yet unmatched pairs. 27754 records in RAM.
INFO 2026-06-08 08:35:29 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:37,929,971
INFO 2026-06-08 08:35:29 MarkDuplicates Tracking 790616 as yet unmatched pairs. 26011 records in RAM.
INFO 2026-06-08 08:35:31 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:43,171,887
INFO 2026-06-08 08:35:31 MarkDuplicates Tracking 788650 as yet unmatched pairs. 24037 records in RAM.
INFO 2026-06-08 08:35:32 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:44,259,223
INFO 2026-06-08 08:35:32 MarkDuplicates Tracking 786804 as yet unmatched pairs. 22187 records in RAM.
INFO 2026-06-08 08:35:34 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:56,562,170
INFO 2026-06-08 08:35:34 MarkDuplicates Tracking 785049 as yet unmatched pairs. 20421 records in RAM.
INFO 2026-06-08 08:35:35 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:75,647,730
INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 783401 as yet unmatched pairs. 18769 records in RAM.
INFO 2026-06-08 08:35:37 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:87,675,534
INFO 2026-06-08 08:35:37 MarkDuplicates Tracking 781841 as yet unmatched pairs. 17202 records in RAM.
INFO 2026-06-08 08:35:39 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:106,098,974
INFO 2026-06-08 08:35:39 MarkDuplicates Tracking 779808 as yet unmatched pairs. 15168 records in RAM.
INFO 2026-06-08 08:35:41 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:111,367,255
INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 777931 as yet unmatched pairs. 13280 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:127,325,693
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 776411 as yet unmatched pairs. 11750 records in RAM.
INFO 2026-06-08 08:35:44 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:136,275,870
INFO 2026-06-08 08:35:44 MarkDuplicates Tracking 774849 as yet unmatched pairs. 10187 records in RAM.
INFO 2026-06-08 08:35:46 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:143,774,097
INFO 2026-06-08 08:35:46 MarkDuplicates Tracking 772732 as yet unmatched pairs. 8070 records in RAM.
INFO 2026-06-08 08:35:48 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:152,219,119
INFO 2026-06-08 08:35:48 MarkDuplicates Tracking 770866 as yet unmatched pairs. 6199 records in RAM.
INFO 2026-06-08 08:35:49 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,352
INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 771886 as yet unmatched pairs. 7211 records in RAM.
INFO 2026-06-08 08:35:51 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:159,779,932
INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 767418 as yet unmatched pairs. 2732 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:169,702,710
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 765227 as yet unmatched pairs. 534 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 2s. Last read position: chr7:2,355,157
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 763940 as yet unmatched pairs. 50413 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr7:5,387,992
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 761338 as yet unmatched pairs. 47805 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,530
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 767719 as yet unmatched pairs. 54181 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:6,402,330
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 757592 as yet unmatched pairs. 44052 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:16,797,631
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 764785 as yet unmatched pairs. 51243 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:26,185,557
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 754186 as yet unmatched pairs. 40637 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:32,559,291
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 751755 as yet unmatched pairs. 38204 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:44,062,740
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 750155 as yet unmatched pairs. 36601 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:47,291,991
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 748181 as yet unmatched pairs. 34624 records in RAM.
INFO 2026-06-08 08:36:10 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:64,669,064
INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 746239 as yet unmatched pairs. 32681 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:73,205,387
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 745220 as yet unmatched pairs. 31654 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:74,736,593
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 743600 as yet unmatched pairs. 30034 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:76,048,170
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 744645 as yet unmatched pairs. 31076 records in RAM.
INFO 2026-06-08 08:36:16 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:87,516,590
INFO 2026-06-08 08:36:16 MarkDuplicates Tracking 740630 as yet unmatched pairs. 27058 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:93,105,375
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 739335 as yet unmatched pairs. 25751 records in RAM.
INFO 2026-06-08 08:36:19 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:98,192,533
INFO 2026-06-08 08:36:19 MarkDuplicates Tracking 737091 as yet unmatched pairs. 23506 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:99,892,309
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 735151 as yet unmatched pairs. 21563 records in RAM.
INFO 2026-06-08 08:36:22 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:100,678,230
INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 733791 as yet unmatched pairs. 20201 records in RAM.
INFO 2026-06-08 08:36:23 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,906
INFO 2026-06-08 08:36:23 MarkDuplicates Tracking 732184 as yet unmatched pairs. 18594 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:102,474,358
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 730708 as yet unmatched pairs. 17112 records in RAM.
INFO 2026-06-08 08:36:26 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:105,111,976
INFO 2026-06-08 08:36:26 MarkDuplicates Tracking 729580 as yet unmatched pairs. 15979 records in RAM.
INFO 2026-06-08 08:36:28 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:116,699,504
INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 728412 as yet unmatched pairs. 14805 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:127,703,305
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 728944 as yet unmatched pairs. 15324 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:129,001,081
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 724176 as yet unmatched pairs. 10556 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:138,001,804
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 722318 as yet unmatched pairs. 8695 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:140,753,274
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 720676 as yet unmatched pairs. 7050 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:144,269,044
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 718915 as yet unmatched pairs. 5283 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:150,572,552
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 717317 as yet unmatched pairs. 3683 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr7:152,176,502
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 715392 as yet unmatched pairs. 1754 records in RAM.
INFO 2026-06-08 08:36:42 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr8:6,730,744
INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 713512 as yet unmatched pairs. 39175 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr8:17,646,056
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 711628 as yet unmatched pairs. 37290 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr8:22,608,047
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 709929 as yet unmatched pairs. 35587 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr8:27,822,466
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 707767 as yet unmatched pairs. 33421 records in RAM.
INFO 2026-06-08 08:36:48 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr8:37,872,679
INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 705985 as yet unmatched pairs. 31636 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr8:39,077,401
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 704826 as yet unmatched pairs. 30475 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr8:47,836,458
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 702913 as yet unmatched pairs. 28556 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr8:58,570,949
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 700884 as yet unmatched pairs. 26525 records in RAM.
INFO 2026-06-08 08:36:55 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr8:67,228,121
INFO 2026-06-08 08:36:55 MarkDuplicates Tracking 699018 as yet unmatched pairs. 24653 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr8:80,171,425
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 697215 as yet unmatched pairs. 22848 records in RAM.
INFO 2026-06-08 08:36:58 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr8:97,644,620
INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 696111 as yet unmatched pairs. 21743 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 60s. Last read position: chr8:100,717,783
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 695346 as yet unmatched pairs. 20977 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr8:108,239,985
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 693857 as yet unmatched pairs. 19486 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr8:124,522,151
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 690378 as yet unmatched pairs. 15998 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr8:131,955,766
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 688383 as yet unmatched pairs. 14003 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,574,790
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 687065 as yet unmatched pairs. 12676 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,088
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 686517 as yet unmatched pairs. 12125 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,024
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 683990 as yet unmatched pairs. 9598 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,173
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 683217 as yet unmatched pairs. 8825 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,577
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 682341 as yet unmatched pairs. 7942 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,408
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 681880 as yet unmatched pairs. 7476 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,319
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 680993 as yet unmatched pairs. 6589 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:144,096,219
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 677503 as yet unmatched pairs. 3099 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:144,512,183
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 675341 as yet unmatched pairs. 934 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr9:5,055,761
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 673886 as yet unmatched pairs. 52417 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr9:19,089,430
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 671747 as yet unmatched pairs. 50267 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr9:33,029,883
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 670431 as yet unmatched pairs. 48950 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr9:34,089,545
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 668118 as yet unmatched pairs. 46633 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr9:35,660,913
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 666121 as yet unmatched pairs. 44625 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 2s. Last read position: chr9:37,126,877
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 664555 as yet unmatched pairs. 43022 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr9:69,252,878
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 663256 as yet unmatched pairs. 41721 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr9:83,000,189
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 660916 as yet unmatched pairs. 39380 records in RAM.
INFO 2026-06-08 08:38:31 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr9:88,410,902
INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 659291 as yet unmatched pairs. 37750 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr9:93,253,070
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 657782 as yet unmatched pairs. 36238 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr9:95,972,107
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 655685 as yet unmatched pairs. 34127 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr9:99,951,259
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 653825 as yet unmatched pairs. 32254 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr9:107,487,888
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 652797 as yet unmatched pairs. 31219 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:112,268,143
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 651164 as yet unmatched pairs. 29586 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr9:114,790,209
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 648206 as yet unmatched pairs. 26625 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr9:121,766,626
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 646735 as yet unmatched pairs. 25152 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr9:125,236,927
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 647142 as yet unmatched pairs. 25555 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr9:127,665,310
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 642677 as yet unmatched pairs. 21082 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:128,309,467
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 640817 as yet unmatched pairs. 19221 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:128,693,975
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 639397 as yet unmatched pairs. 17800 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:129,908,915
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 636818 as yet unmatched pairs. 15221 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:130,714,396
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 635336 as yet unmatched pairs. 13734 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:131,626,393
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 633478 as yet unmatched pairs. 11874 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:133,363,416
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 631946 as yet unmatched pairs. 10333 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:135,862,575
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 629618 as yet unmatched pairs. 8005 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:136,476,936
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 628731 as yet unmatched pairs. 7117 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:136,942,181
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 625909 as yet unmatched pairs. 4290 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:137,242,898
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 627188 as yet unmatched pairs. 5568 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr10:884,464
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 621499 as yet unmatched pairs. 33079 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr10:6,232,952
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 619757 as yet unmatched pairs. 31328 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr10:18,539,756
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 617799 as yet unmatched pairs. 29364 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr10:29,523,521
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 616184 as yet unmatched pairs. 27736 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr10:32,911,918
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 615187 as yet unmatched pairs. 26736 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr10:45,834,044
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 613055 as yet unmatched pairs. 24604 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr10:51,698,152
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 611752 as yet unmatched pairs. 23297 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr10:68,982,708
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 610241 as yet unmatched pairs. 21776 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr10:73,134,602
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 608150 as yet unmatched pairs. 19684 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 3s. Last read position: chr10:77,819,378
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 606235 as yet unmatched pairs. 17769 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr10:84,371,607
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 604884 as yet unmatched pairs. 16414 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr10:90,896,367
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 603478 as yet unmatched pairs. 15005 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:95,627,360
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 601686 as yet unmatched pairs. 13207 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:97,662,912
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 599891 as yet unmatched pairs. 11407 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:102,033,122
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 598125 as yet unmatched pairs. 9632 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:103,444,649
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 596240 as yet unmatched pairs. 7747 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:113,165,817
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 594761 as yet unmatched pairs. 6265 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:119,169,193
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 593047 as yet unmatched pairs. 4549 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr10:125,721,271
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 590786 as yet unmatched pairs. 2282 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:131,955,690
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 589278 as yet unmatched pairs. 770 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 2s. Last read position: chr11:319,758
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 593974 as yet unmatched pairs. 96194 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 2s. Last read position: chr11:615,005
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 585477 as yet unmatched pairs. 87697 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 2s. Last read position: chr11:1,093,024
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 583669 as yet unmatched pairs. 85889 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr11:1,182,996
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 581753 as yet unmatched pairs. 83970 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:1,184,645
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 586144 as yet unmatched pairs. 88361 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr11:1,186,224
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 581440 as yet unmatched pairs. 83657 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:1,188,287
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 580943 as yet unmatched pairs. 83157 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr11:1,190,525
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 578181 as yet unmatched pairs. 80394 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:1,191,795
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 578725 as yet unmatched pairs. 80938 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:1,225,687
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 577774 as yet unmatched pairs. 79984 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:1,236,975
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 575363 as yet unmatched pairs. 77568 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:1,242,699
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 576335 as yet unmatched pairs. 78539 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,230
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 573545 as yet unmatched pairs. 75748 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,698
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 578134 as yet unmatched pairs. 80337 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,323
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 577079 as yet unmatched pairs. 79282 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,846
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 574055 as yet unmatched pairs. 76258 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,163
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 572623 as yet unmatched pairs. 74826 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,808
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 574417 as yet unmatched pairs. 76620 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,907
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 571685 as yet unmatched pairs. 73888 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,545
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 570514 as yet unmatched pairs. 72717 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,218
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 571183 as yet unmatched pairs. 73386 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,815
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 578264 as yet unmatched pairs. 80463 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,161
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 569029 as yet unmatched pairs. 71227 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,091
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 567224 as yet unmatched pairs. 69422 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,722
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 561616 as yet unmatched pairs. 63813 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:1,254,770
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 559559 as yet unmatched pairs. 61752 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,761,332
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 560725 as yet unmatched pairs. 62913 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:4,112,050
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 555094 as yet unmatched pairs. 57281 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:8,712,583
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 553110 as yet unmatched pairs. 55295 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:12,224,758
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 551397 as yet unmatched pairs. 53580 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:18,335,797
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 549682 as yet unmatched pairs. 51865 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:33,287,229
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 548159 as yet unmatched pairs. 50342 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:43,680,852
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 546411 as yet unmatched pairs. 48588 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:46,382,357
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 545057 as yet unmatched pairs. 47231 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:47,584,362
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 543272 as yet unmatched pairs. 45445 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:57,712,092
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 540618 as yet unmatched pairs. 42789 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:60,903,489
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 539011 as yet unmatched pairs. 41181 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 2s. Last read position: chr11:62,130,472
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 536969 as yet unmatched pairs. 39132 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,362
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 535947 as yet unmatched pairs. 38109 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:62,663,094
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 533887 as yet unmatched pairs. 36046 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:63,908,273
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 531612 as yet unmatched pairs. 33771 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:64,765,452
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 530253 as yet unmatched pairs. 32411 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:65,130,101
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 527542 as yet unmatched pairs. 29699 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:65,641,441
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 525368 as yet unmatched pairs. 27502 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:66,233,025
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 523394 as yet unmatched pairs. 25523 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:67,279,861
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 521608 as yet unmatched pairs. 23737 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:68,042,644
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 519820 as yet unmatched pairs. 21949 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,092
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 518060 as yet unmatched pairs. 20186 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:72,237,606
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 515770 as yet unmatched pairs. 17893 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:75,400,751
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 516403 as yet unmatched pairs. 18513 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:83,169,193
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 512126 as yet unmatched pairs. 14231 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:96,341,597
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 510329 as yet unmatched pairs. 12432 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:108,302,968
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 508569 as yet unmatched pairs. 10670 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:117,842,725
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 506520 as yet unmatched pairs. 8619 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:118,908,488
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 504935 as yet unmatched pairs. 7034 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:121,577,354
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 503034 as yet unmatched pairs. 5133 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:123,061,126
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 503026 as yet unmatched pairs. 5125 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr11:128,971,037
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 499858 as yet unmatched pairs. 1954 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr12:753,455
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 498047 as yet unmatched pairs. 61261 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:4,657,779
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 496264 as yet unmatched pairs. 59474 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:6,557,238
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 494242 as yet unmatched pairs. 57451 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:6,957,928
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 492219 as yet unmatched pairs. 55428 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:9,113,510
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 490656 as yet unmatched pairs. 53864 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:12,909,141
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 488917 as yet unmatched pairs. 52121 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:22,644,225
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 486938 as yet unmatched pairs. 50136 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:32,802,461
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 485236 as yet unmatched pairs. 48432 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:48,083,729
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 483273 as yet unmatched pairs. 46469 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:49,053,586
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 481568 as yet unmatched pairs. 44762 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:49,272,618
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 481766 as yet unmatched pairs. 44960 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:51,240,371
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 479169 as yet unmatched pairs. 42359 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 2s. Last read position: chr12:52,904,763
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 482034 as yet unmatched pairs. 45221 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:53,059,324
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 474564 as yet unmatched pairs. 37749 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:53,665,351
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 474142 as yet unmatched pairs. 37327 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:54,343,289
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 472104 as yet unmatched pairs. 35287 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:56,155,130
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 469517 as yet unmatched pairs. 32698 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:56,612,089
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 468148 as yet unmatched pairs. 31327 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:57,091,806
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 466045 as yet unmatched pairs. 29224 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:57,300,129
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 464261 as yet unmatched pairs. 27440 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:62,524,609
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 462588 as yet unmatched pairs. 25763 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:69,258,841
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 461027 as yet unmatched pairs. 24199 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,791
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 459429 as yet unmatched pairs. 22599 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:94,149,568
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 457158 as yet unmatched pairs. 20325 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:101,402,865
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 455717 as yet unmatched pairs. 18884 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:104,313,251
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 454553 as yet unmatched pairs. 17720 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:109,904,114
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 451772 as yet unmatched pairs. 14938 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:112,022,337
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 450327 as yet unmatched pairs. 13492 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:112,970,046
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 449881 as yet unmatched pairs. 13044 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:120,072,716
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 446125 as yet unmatched pairs. 9282 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:120,999,537
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 444407 as yet unmatched pairs. 7563 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:122,577,679
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 442495 as yet unmatched pairs. 5649 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:124,350,605
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 440600 as yet unmatched pairs. 3754 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:132,053,568
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 438772 as yet unmatched pairs. 1918 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr13:19,993,131
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 437310 as yet unmatched pairs. 15638 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr13:25,315,442
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 434974 as yet unmatched pairs. 13295 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr13:32,683,922
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 433272 as yet unmatched pairs. 11593 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr13:44,434,768
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 431750 as yet unmatched pairs. 10064 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr13:49,495,982
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 429791 as yet unmatched pairs. 8101 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr13:75,823,679
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 428500 as yet unmatched pairs. 6805 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr13:98,015,760
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 426891 as yet unmatched pairs. 5194 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr13:110,176,448
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 424632 as yet unmatched pairs. 2932 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr13:113,325,529
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 422525 as yet unmatched pairs. 807 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 2s. Last read position: chr14:21,233,984
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 422509 as yet unmatched pairs. 48502 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr14:23,058,978
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 418831 as yet unmatched pairs. 44823 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:24,146,215
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 417234 as yet unmatched pairs. 43220 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr14:31,128,652
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 415608 as yet unmatched pairs. 41593 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:39,348,786
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 413934 as yet unmatched pairs. 39916 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr14:52,683,806
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 412674 as yet unmatched pairs. 38638 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:58,487,972
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 410193 as yet unmatched pairs. 36152 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr14:64,225,324
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 409256 as yet unmatched pairs. 35215 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:67,802,178
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 406777 as yet unmatched pairs. 32736 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:73,198,040
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 405129 as yet unmatched pairs. 31083 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:75,745,570
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 403194 as yet unmatched pairs. 29145 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:91,170,075
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 401725 as yet unmatched pairs. 27675 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:94,111,680
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 400493 as yet unmatched pairs. 26440 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:100,337,085
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 400120 as yet unmatched pairs. 26050 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:102,000,947
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 396370 as yet unmatched pairs. 22300 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:102,086,024
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 395070 as yet unmatched pairs. 20999 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:104,707,688
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 392160 as yet unmatched pairs. 18088 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr14:105,469,849
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 390023 as yet unmatched pairs. 15951 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:105,625,894
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 390002 as yet unmatched pairs. 15929 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,425
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 401682 as yet unmatched pairs. 27609 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr14:105,668,256
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 393678 as yet unmatched pairs. 19605 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,472
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 404261 as yet unmatched pairs. 30187 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,583
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 407151 as yet unmatched pairs. 33077 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,698
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 394852 as yet unmatched pairs. 20777 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr14:105,741,991
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 402275 as yet unmatched pairs. 28200 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,170
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 398308 as yet unmatched pairs. 24231 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,837
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 416295 as yet unmatched pairs. 42218 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,967
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 387678 as yet unmatched pairs. 13601 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr14:105,769,966
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 378287 as yet unmatched pairs. 4210 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,353
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 377091 as yet unmatched pairs. 3014 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr15:22,866,224
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 374130 as yet unmatched pairs. 32316 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:31,372,241
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 372392 as yet unmatched pairs. 30576 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:36,618,949
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 370549 as yet unmatched pairs. 28733 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr15:41,087,628
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 368919 as yet unmatched pairs. 27101 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:43,189,221
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 367241 as yet unmatched pairs. 25421 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,780
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 368496 as yet unmatched pairs. 26676 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:49,134,009
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 363889 as yet unmatched pairs. 22068 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr15:55,915,841
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 361950 as yet unmatched pairs. 20125 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr15:60,357,222
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 360920 as yet unmatched pairs. 19093 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr15:64,156,105
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 360197 as yet unmatched pairs. 18366 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:66,500,312
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 358298 as yet unmatched pairs. 16459 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr15:72,045,874
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 354391 as yet unmatched pairs. 12550 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:74,033,208
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 353961 as yet unmatched pairs. 12112 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:75,206,971
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 350579 as yet unmatched pairs. 8727 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:78,493,919
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 348487 as yet unmatched pairs. 6635 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:84,645,516
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 346789 as yet unmatched pairs. 4936 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:89,908,285
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 345022 as yet unmatched pairs. 3166 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:92,946,103
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 343135 as yet unmatched pairs. 1278 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:426,399
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 341275 as yet unmatched pairs. 54970 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:910,923
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 338775 as yet unmatched pairs. 52470 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:2,000,069
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 336682 as yet unmatched pairs. 50376 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:2,519,636
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 334822 as yet unmatched pairs. 48516 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:2,769,002
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 333730 as yet unmatched pairs. 47424 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:3,592,749
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 330782 as yet unmatched pairs. 44476 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:8,801,872
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 329193 as yet unmatched pairs. 42886 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:11,873,063
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 327686 as yet unmatched pairs. 41378 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:14,945,583
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 325891 as yet unmatched pairs. 39583 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:16,285,454
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 324450 as yet unmatched pairs. 38142 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:18,350,655
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 324473 as yet unmatched pairs. 38165 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:18,815,226
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 323450 as yet unmatched pairs. 37139 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,031
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 321811 as yet unmatched pairs. 35500 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:21,891,905
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 321032 as yet unmatched pairs. 34719 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,043
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 320388 as yet unmatched pairs. 34075 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:28,121,682
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 318832 as yet unmatched pairs. 32517 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:28,833,334
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 317588 as yet unmatched pairs. 31272 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:29,483,901
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 317190 as yet unmatched pairs. 30873 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:29,859,491
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 314677 as yet unmatched pairs. 28359 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:30,223,104
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 312482 as yet unmatched pairs. 26164 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr16:30,716,416
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 311517 as yet unmatched pairs. 25195 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:31,182,606
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 313374 as yet unmatched pairs. 27045 records in RAM.
INFO 2026-06-08 08:44:10 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:46,680,763
INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 307852 as yet unmatched pairs. 21522 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:53,498,581
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 305873 as yet unmatched pairs. 19537 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:57,054,795
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 304196 as yet unmatched pairs. 17859 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:58,708,083
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 302112 as yet unmatched pairs. 15774 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:67,658,313
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 300135 as yet unmatched pairs. 13796 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:69,150,590
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 298204 as yet unmatched pairs. 11864 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:70,555,078
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 296591 as yet unmatched pairs. 10250 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:75,166,817
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 294506 as yet unmatched pairs. 8165 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:84,566,751
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 292685 as yet unmatched pairs. 6339 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:88,577,179
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 290720 as yet unmatched pairs. 4374 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:89,279,705
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 288822 as yet unmatched pairs. 2475 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:89,911,166
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 286829 as yet unmatched pairs. 481 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr17:1,365,037
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 286595 as yet unmatched pairs. 87335 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr17:2,324,155
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 282747 as yet unmatched pairs. 83487 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:4,499,127
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 280649 as yet unmatched pairs. 81387 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:4,946,764
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 281618 as yet unmatched pairs. 82356 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 2s. Last read position: chr17:7,223,105
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 276844 as yet unmatched pairs. 77582 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:7,496,294
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 274976 as yet unmatched pairs. 75714 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:7,579,656
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 273508 as yet unmatched pairs. 74245 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:8,377,570
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 271631 as yet unmatched pairs. 72366 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:16,381,160
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 270605 as yet unmatched pairs. 71338 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:18,246,206
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 267651 as yet unmatched pairs. 68384 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:27,640,573
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 266311 as yet unmatched pairs. 67040 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:28,696,858
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 264172 as yet unmatched pairs. 64900 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:30,455,355
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 262792 as yet unmatched pairs. 63520 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:34,255,267
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 260412 as yet unmatched pairs. 61140 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:36,103,948
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 258904 as yet unmatched pairs. 59632 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 128s. Last read position: chr17:38,707,502
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 257455 as yet unmatched pairs. 58183 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 2s. Last read position: chr17:39,511,573
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 255631 as yet unmatched pairs. 56359 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 2s. Last read position: chr17:40,291,508
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 253526 as yet unmatched pairs. 54252 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 1s. Last read position: chr17:41,524,893
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 255580 as yet unmatched pairs. 56306 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr17:42,309,377
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 249936 as yet unmatched pairs. 50662 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr17:43,490,397
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 248063 as yet unmatched pairs. 48786 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 2s. Last read position: chr17:44,934,605
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 246238 as yet unmatched pairs. 46961 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr17:47,049,558
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 244804 as yet unmatched pairs. 45527 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr17:48,895,640
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 243362 as yet unmatched pairs. 44085 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,769
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 245505 as yet unmatched pairs. 46228 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,941
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 246470 as yet unmatched pairs. 47193 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,835
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 241209 as yet unmatched pairs. 41931 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,179
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 246259 as yet unmatched pairs. 46981 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,188
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 244347 as yet unmatched pairs. 45066 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,570
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 234411 as yet unmatched pairs. 35130 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:51,260,614
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 229344 as yet unmatched pairs. 30060 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:59,644,302
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 229020 as yet unmatched pairs. 29735 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:59,707,747
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 225776 as yet unmatched pairs. 26491 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:63,813,355
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 223975 as yet unmatched pairs. 24690 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr17:67,188,353
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 222184 as yet unmatched pairs. 22899 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:72,124,306
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 220699 as yet unmatched pairs. 21412 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 2s. Last read position: chr17:75,502,169
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 218448 as yet unmatched pairs. 19160 records in RAM.
INFO 2026-06-08 08:47:40 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 2s. Last read position: chr17:75,753,753
INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 217168 as yet unmatched pairs. 17880 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 2s. Last read position: chr17:76,473,297
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 214428 as yet unmatched pairs. 15139 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:78,392,485
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 212631 as yet unmatched pairs. 13339 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:80,287,974
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 212569 as yet unmatched pairs. 13276 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr17:80,346,308
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 210056 as yet unmatched pairs. 10763 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:81,199,437
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 206890 as yet unmatched pairs. 7596 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:81,704,308
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 205018 as yet unmatched pairs. 5724 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:81,933,333
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 203539 as yet unmatched pairs. 4245 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:82,315,305
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 201484 as yet unmatched pairs. 2190 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr18:1,678,073
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 198849 as yet unmatched pairs. 12226 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr18:10,471,547
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 197150 as yet unmatched pairs. 10527 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr18:23,903,972
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 195467 as yet unmatched pairs. 8836 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr18:35,687,013
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 193718 as yet unmatched pairs. 7085 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr18:49,490,884
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 192962 as yet unmatched pairs. 6328 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr18:57,668,523
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 190055 as yet unmatched pairs. 3421 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 2s. Last read position: chr18:70,150,031
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 188253 as yet unmatched pairs. 1614 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 2s. Last read position: chr19:581,434
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 188066 as yet unmatched pairs. 85549 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:1,047,268
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 184002 as yet unmatched pairs. 81485 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:1,407,785
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 182100 as yet unmatched pairs. 79579 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:1,948,278
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 179447 as yet unmatched pairs. 76926 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:2,422,098
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 177516 as yet unmatched pairs. 74995 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:3,759,860
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 175245 as yet unmatched pairs. 72723 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:4,859,845
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 173262 as yet unmatched pairs. 70739 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:5,951,497
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 171208 as yet unmatched pairs. 68685 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:7,527,615
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 169206 as yet unmatched pairs. 66683 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:8,544,411
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 167209 as yet unmatched pairs. 64685 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:10,259,149
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 165534 as yet unmatched pairs. 63010 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:10,805,953
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 163693 as yet unmatched pairs. 61169 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:11,513,161
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 161629 as yet unmatched pairs. 59099 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr19:12,918,206
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 159656 as yet unmatched pairs. 57126 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 2s. Last read position: chr19:14,092,664
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 157900 as yet unmatched pairs. 55364 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:15,119,229
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 155916 as yet unmatched pairs. 53380 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr19:15,427,321
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 154044 as yet unmatched pairs. 51508 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 2s. Last read position: chr19:17,330,951
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 151956 as yet unmatched pairs. 49419 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:18,145,844
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 150122 as yet unmatched pairs. 47584 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:18,768,516
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 148076 as yet unmatched pairs. 45538 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 2s. Last read position: chr19:20,805,809
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 145957 as yet unmatched pairs. 43416 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr19:34,428,409
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 144253 as yet unmatched pairs. 41712 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:35,654,600
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 142633 as yet unmatched pairs. 40092 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:38,130,733
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 139969 as yet unmatched pairs. 37428 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:38,838,939
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 138700 as yet unmatched pairs. 36158 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:39,474,650
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 136233 as yet unmatched pairs. 33691 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:39,886,404
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 137983 as yet unmatched pairs. 35441 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:39,913,858
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 134232 as yet unmatched pairs. 31690 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:40,583,395
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 130821 as yet unmatched pairs. 28279 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:41,715,020
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 131626 as yet unmatched pairs. 29084 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:41,897,787
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 127611 as yet unmatched pairs. 25067 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:42,292,968
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 126359 as yet unmatched pairs. 23814 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 2s. Last read position: chr19:44,907,855
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 123724 as yet unmatched pairs. 21171 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:45,786,145
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 121445 as yet unmatched pairs. 18890 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:47,209,248
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 119176 as yet unmatched pairs. 16621 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:48,617,792
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 116954 as yet unmatched pairs. 14399 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:49,490,550
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 117114 as yet unmatched pairs. 14558 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:49,803,361
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 113104 as yet unmatched pairs. 10548 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:50,963,354
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 110769 as yet unmatched pairs. 8213 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:54,201,201
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 111181 as yet unmatched pairs. 8625 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:55,091,426
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 107378 as yet unmatched pairs. 4822 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:55,685,605
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 105215 as yet unmatched pairs. 2659 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:58,548,313
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 103868 as yet unmatched pairs. 1312 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr20:2,656,529
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 101578 as yet unmatched pairs. 24101 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr20:5,118,769
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 99422 as yet unmatched pairs. 21944 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr20:17,660,070
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 97915 as yet unmatched pairs. 20437 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr20:25,282,134
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 96016 as yet unmatched pairs. 18537 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr20:34,077,138
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 94219 as yet unmatched pairs. 16740 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr20:35,654,478
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 92780 as yet unmatched pairs. 15300 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr20:38,011,768
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 90171 as yet unmatched pairs. 12691 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr20:44,905,976
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 88380 as yet unmatched pairs. 10899 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr20:47,663,093
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 86448 as yet unmatched pairs. 8967 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 2s. Last read position: chr20:50,960,079
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 84394 as yet unmatched pairs. 6913 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr20:59,006,441
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 83363 as yet unmatched pairs. 5881 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,271
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 81007 as yet unmatched pairs. 3525 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:63,696,841
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 78720 as yet unmatched pairs. 1237 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,741
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 76970 as yet unmatched pairs. 13396 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,263
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 76202 as yet unmatched pairs. 12613 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,943
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 75836 as yet unmatched pairs. 12244 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr21:25,592,813
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 74729 as yet unmatched pairs. 11137 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr21:33,432,323
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 72912 as yet unmatched pairs. 9320 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr21:36,741,816
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 71002 as yet unmatched pairs. 7410 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr21:41,489,507
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 69528 as yet unmatched pairs. 5936 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr21:44,136,067
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 67170 as yet unmatched pairs. 3578 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr21:45,997,458
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 65815 as yet unmatched pairs. 2222 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr22:17,738,158
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 63512 as yet unmatched pairs. 30834 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr22:20,582,865
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 61598 as yet unmatched pairs. 28920 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr22:22,906,436
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 60224 as yet unmatched pairs. 27546 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 2s. Last read position: chr22:24,064,061
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 57824 as yet unmatched pairs. 25146 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,674
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 59977 as yet unmatched pairs. 27299 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,285
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 56454 as yet unmatched pairs. 23776 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr22:31,126,393
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 51824 as yet unmatched pairs. 19146 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr22:36,141,313
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 50759 as yet unmatched pairs. 18081 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr22:36,326,567
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 48880 as yet unmatched pairs. 16202 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr22:37,632,043
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 46578 as yet unmatched pairs. 13900 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr22:38,726,006
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 44337 as yet unmatched pairs. 11659 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr22:40,830,881
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 42640 as yet unmatched pairs. 9962 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr22:41,867,066
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 41154 as yet unmatched pairs. 8476 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 2s. Last read position: chr22:44,726,607
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 38918 as yet unmatched pairs. 6240 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr22:50,233,303
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 36899 as yet unmatched pairs. 4221 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr22:50,506,883
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 35265 as yet unmatched pairs. 2587 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chrX:1,427,865
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 32383 as yet unmatched pairs. 28300 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chrX:14,574,479
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 30435 as yet unmatched pairs. 26352 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chrX:24,071,604
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 29250 as yet unmatched pairs. 25161 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:41,171,871
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 27334 as yet unmatched pairs. 23245 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chrX:47,210,073
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 25406 as yet unmatched pairs. 21317 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chrX:49,030,249
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 23380 as yet unmatched pairs. 19291 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chrX:53,535,422
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 21426 as yet unmatched pairs. 17337 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 2s. Last read position: chrX:65,733,185
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 19507 as yet unmatched pairs. 15418 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chrX:71,563,001
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 18307 as yet unmatched pairs. 14218 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chrX:78,118,153
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 16258 as yet unmatched pairs. 12169 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chrX:103,676,478
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 14723 as yet unmatched pairs. 10634 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:119,870,731
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 12561 as yet unmatched pairs. 8472 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chrX:134,781,874
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 11106 as yet unmatched pairs. 7017 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 2s. Last read position: chrX:153,797,503
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 10443 as yet unmatched pairs. 6352 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:154,352,208
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 7493 as yet unmatched pairs. 3402 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chrX:154,466,463
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 5175 as yet unmatched pairs. 1084 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,178
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 3902 as yet unmatched pairs. 937 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,355
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 3118 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,292
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 1372 as yet unmatched pairs. 1358 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: KI270733.1:177,440
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 59 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 646438719 records. 0 pairs never matched.
INFO 2026-06-08 08:51:42 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140640; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:51:42 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:51:46 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:51:46 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:52:05 OpticalDuplicateFinder Large duplicate set. size = 1651
INFO 2026-06-08 08:52:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,712
INFO 2026-06-08 08:52:11 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 08:52:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,326
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,058
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1557
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,511
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1328
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,651
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 2068
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,031
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,708
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1889
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,801
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1242
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,938
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1272
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,574
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,035
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,750
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,523
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,025
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1320
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,172
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1497
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,264
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1647
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,772
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1305
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,348
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,086
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,638
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,903
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1279
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,917
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1544
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,236
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1348
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,250
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1391
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,301
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1384
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,185
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,934
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1289
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,909
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,014
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1762
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,586
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1720
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,998
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 2124
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,488
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,477
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1397
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,718
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,550
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1556
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,824
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1398
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,786
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,080
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1526
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,728
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1941
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,367
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1316
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,406
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1133
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,560
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,171
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1338
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,754
INFO 2026-06-08 08:53:17 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:53:17 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:54:21 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:54:25 MarkDuplicates After generateDuplicateIndexes freeMemory: 203943696; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:54:25 MarkDuplicates Marking 352408286 records as duplicates.
INFO 2026-06-08 08:54:25 MarkDuplicates Found 11025833 optical duplicate clusters.
INFO 2026-06-08 08:54:25 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:54:43 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:23,053,798
INFO 2026-06-08 08:55:00 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 17s. Last read position: chr1:45,515,767
INFO 2026-06-08 08:55:17 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 17s. Last read position: chr1:119,803,119
INFO 2026-06-08 08:55:34 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:08s. Time for last 10,000,000: 16s. Last read position: chr1:155,189,472
INFO 2026-06-08 08:55:51 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:25s. Time for last 10,000,000: 17s. Last read position: chr1:197,199,692
INFO 2026-06-08 08:56:08 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:42s. Time for last 10,000,000: 17s. Last read position: chr2:8,860,633
INFO 2026-06-08 08:56:25 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:59s. Time for last 10,000,000: 16s. Last read position: chr2:47,379,933
INFO 2026-06-08 08:56:42 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:16s. Time for last 10,000,000: 16s. Last read position: chr2:106,096,784
INFO 2026-06-08 08:56:59 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:33s. Time for last 10,000,000: 17s. Last read position: chr2:189,006,228
INFO 2026-06-08 08:57:16 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:50s. Time for last 10,000,000: 16s. Last read position: chr2:233,458,377
INFO 2026-06-08 08:57:32 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:07s. Time for last 10,000,000: 16s. Last read position: chr3:48,440,401
INFO 2026-06-08 08:57:50 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:24s. Time for last 10,000,000: 17s. Last read position: chr3:124,773,869
INFO 2026-06-08 08:58:07 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:41s. Time for last 10,000,000: 17s. Last read position: chr3:195,778,941
INFO 2026-06-08 08:58:23 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:58s. Time for last 10,000,000: 16s. Last read position: chr4:57,110,093
INFO 2026-06-08 08:58:41 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:15s. Time for last 10,000,000: 17s. Last read position: chr5:1,280,268
INFO 2026-06-08 08:58:58 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:32s. Time for last 10,000,000: 17s. Last read position: chr5:131,439,585
INFO 2026-06-08 08:59:14 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:49s. Time for last 10,000,000: 16s. Last read position: chr5:171,387,990
INFO 2026-06-08 08:59:31 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:05s. Time for last 10,000,000: 16s. Last read position: chr6:26,158,333
INFO 2026-06-08 08:59:48 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:22s. Time for last 10,000,000: 16s. Last read position: chr6:32,848,672
INFO 2026-06-08 09:00:05 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:39s. Time for last 10,000,000: 16s. Last read position: chr6:106,098,974
INFO 2026-06-08 09:00:22 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:56s. Time for last 10,000,000: 16s. Last read position: chr7:5,387,992
INFO 2026-06-08 09:00:38 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:12s. Time for last 10,000,000: 16s. Last read position: chr7:74,736,593
INFO 2026-06-08 09:00:55 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:29s. Time for last 10,000,000: 16s. Last read position: chr7:116,699,504
INFO 2026-06-08 09:01:12 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:46s. Time for last 10,000,000: 16s. Last read position: chr8:22,608,047
INFO 2026-06-08 09:01:29 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:03s. Time for last 10,000,000: 16s. Last read position: chr8:108,239,985
INFO 2026-06-08 09:01:45 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:19s. Time for last 10,000,000: 16s. Last read position: chr8:144,096,219
INFO 2026-06-08 09:02:02 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:36s. Time for last 10,000,000: 16s. Last read position: chr9:88,410,902
INFO 2026-06-08 09:02:19 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:53s. Time for last 10,000,000: 17s. Last read position: chr9:128,309,467
INFO 2026-06-08 09:02:35 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:10s. Time for last 10,000,000: 16s. Last read position: chr10:884,464
INFO 2026-06-08 09:02:53 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:27s. Time for last 10,000,000: 17s. Last read position: chr10:84,371,607
INFO 2026-06-08 09:03:09 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:44s. Time for last 10,000,000: 16s. Last read position: chr11:319,758
INFO 2026-06-08 09:03:26 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:00s. Time for last 10,000,000: 16s. Last read position: chr11:1,236,975
INFO 2026-06-08 09:03:42 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:16s. Time for last 10,000,000: 16s. Last read position: chr11:1,248,218
INFO 2026-06-08 09:03:59 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:33s. Time for last 10,000,000: 16s. Last read position: chr11:18,335,797
INFO 2026-06-08 09:04:15 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:50s. Time for last 10,000,000: 16s. Last read position: chr11:63,908,273
INFO 2026-06-08 09:04:32 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:06s. Time for last 10,000,000: 16s. Last read position: chr11:83,169,193
INFO 2026-06-08 09:04:49 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:23s. Time for last 10,000,000: 16s. Last read position: chr12:6,557,238
INFO 2026-06-08 09:05:05 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:40s. Time for last 10,000,000: 16s. Last read position: chr12:52,904,763
INFO 2026-06-08 09:05:22 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:56s. Time for last 10,000,000: 16s. Last read position: chr12:76,030,791
INFO 2026-06-08 09:05:39 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:13s. Time for last 10,000,000: 16s. Last read position: chr12:124,350,605
INFO 2026-06-08 09:05:56 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:30s. Time for last 10,000,000: 16s. Last read position: chr13:113,325,529
INFO 2026-06-08 09:06:13 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:47s. Time for last 10,000,000: 16s. Last read position: chr14:73,198,040
INFO 2026-06-08 09:06:29 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:03s. Time for last 10,000,000: 16s. Last read position: chr14:105,643,425
INFO 2026-06-08 09:06:45 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:19s. Time for last 10,000,000: 15s. Last read position: chr14:105,854,353
INFO 2026-06-08 09:07:02 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:36s. Time for last 10,000,000: 16s. Last read position: chr15:64,156,105
INFO 2026-06-08 09:07:19 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:53s. Time for last 10,000,000: 16s. Last read position: chr16:910,923
INFO 2026-06-08 09:07:35 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:10s. Time for last 10,000,000: 16s. Last read position: chr16:18,815,226
INFO 2026-06-08 09:07:52 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:26s. Time for last 10,000,000: 16s. Last read position: chr16:31,182,606
INFO 2026-06-08 09:08:09 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:43s. Time for last 10,000,000: 16s. Last read position: chr16:88,577,179
INFO 2026-06-08 09:08:25 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:00s. Time for last 10,000,000: 16s. Last read position: chr17:8,377,570
INFO 2026-06-08 09:08:42 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:16s. Time for last 10,000,000: 16s. Last read position: chr17:40,291,508
INFO 2026-06-08 09:08:58 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:32s. Time for last 10,000,000: 16s. Last read position: chr17:50,194,179
INFO 2026-06-08 09:09:15 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:49s. Time for last 10,000,000: 16s. Last read position: chr17:75,753,753
INFO 2026-06-08 09:09:31 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:05s. Time for last 10,000,000: 16s. Last read position: chr18:10,471,547
INFO 2026-06-08 09:09:48 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:22s. Time for last 10,000,000: 16s. Last read position: chr19:2,422,098
INFO 2026-06-08 09:10:05 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:39s. Time for last 10,000,000: 16s. Last read position: chr19:14,092,664
INFO 2026-06-08 09:10:21 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:56s. Time for last 10,000,000: 16s. Last read position: chr19:38,838,939
INFO 2026-06-08 09:10:38 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:12s. Time for last 10,000,000: 16s. Last read position: chr19:47,209,248
INFO 2026-06-08 09:10:54 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:28s. Time for last 10,000,000: 16s. Last read position: chr20:5,118,769
INFO 2026-06-08 09:11:11 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:45s. Time for last 10,000,000: 16s. Last read position: chr20:62,813,271
INFO 2026-06-08 09:11:26 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:01s. Time for last 10,000,000: 15s. Last read position: chr21:45,997,458
INFO 2026-06-08 09:11:43 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:17s. Time for last 10,000,000: 16s. Last read position: chr22:37,632,043
INFO 2026-06-08 09:12:00 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:34s. Time for last 10,000,000: 16s. Last read position: chrX:41,171,871
INFO 2026-06-08 09:12:16 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:17:50s. Time for last 10,000,000: 16s. Last read position: chrX:153,797,503
INFO 2026-06-08 09:12:35 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:18:10s. Time for last 10,000,000: 19s. Last read position: */*
INFO 2026-06-08 09:12:36 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:12:36 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:12:36 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:12:36 MarkDuplicates Before output close freeMemory: 203886648; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:12:36 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:12:36 MarkDuplicates After output close freeMemory: 104141496; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:12:36 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.77 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory