Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/ecd326546f2f66e7990b3d1c9b38e3/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/825fc505556a00804613ccbfbf2399/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/825fc505556a00804613ccbfbf2399/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records Processed 412000000 records Processed 413000000 records Processed 414000000 records Processed 415000000 records Processed 416000000 records Processed 417000000 records Processed 418000000 records Processed 419000000 records Processed 420000000 records Processed 421000000 records Processed 422000000 records Processed 423000000 records Processed 424000000 records Processed 425000000 records Processed 426000000 records Processed 427000000 records Processed 428000000 records Processed 429000000 records Processed 430000000 records Processed 431000000 records Processed 432000000 records Processed 433000000 records Processed 434000000 records Processed 435000000 records Processed 436000000 records Processed 437000000 records Processed 438000000 records Processed 439000000 records Processed 440000000 records Processed 441000000 records Processed 442000000 records Processed 443000000 records Processed 444000000 records Processed 445000000 records Processed 446000000 records Processed 447000000 records Processed 448000000 records Processed 449000000 records Processed 450000000 records Processed 451000000 records Processed 452000000 records Processed 453000000 records Processed 454000000 records Processed 455000000 records Processed 456000000 records Processed 457000000 records Processed 458000000 records Processed 459000000 records Processed 460000000 records Processed 461000000 records Processed 462000000 records Processed 463000000 records Processed 464000000 records Processed 465000000 records Processed 466000000 records Processed 467000000 records Processed 468000000 records Processed 469000000 records Processed 470000000 records Processed 471000000 records Processed 472000000 records Processed 473000000 records Processed 474000000 records Processed 475000000 records Processed 476000000 records Processed 477000000 records Processed 478000000 records Processed 479000000 records Processed 480000000 records Processed 481000000 records Processed 482000000 records Processed 483000000 records Processed 484000000 records Processed 485000000 records Processed 486000000 records Processed 487000000 records Processed 488000000 records Processed 489000000 records Processed 490000000 records Processed 491000000 records Processed 492000000 records Processed 493000000 records Processed 494000000 records Processed 495000000 records Processed 496000000 records Processed 497000000 records Processed 498000000 records Processed 499000000 records Processed 500000000 records Processed 501000000 records Processed 502000000 records Processed 503000000 records Processed 504000000 records Processed 505000000 records Processed 506000000 records Processed 507000000 records Processed 508000000 records Processed 509000000 records Processed 510000000 records Processed 511000000 records Processed 512000000 records Processed 513000000 records Processed 514000000 records Processed 515000000 records Processed 516000000 records Processed 517000000 records Processed 518000000 records Processed 519000000 records Processed 520000000 records Processed 521000000 records Processed 522000000 records Processed 523000000 records Processed 524000000 records Processed 525000000 records Processed 526000000 records Processed 527000000 records Processed 528000000 records Processed 529000000 records Processed 530000000 records Processed 531000000 records Processed 532000000 records Processed 533000000 records Processed 534000000 records Processed 535000000 records Processed 536000000 records Processed 537000000 records Processed 538000000 records Processed 539000000 records Processed 540000000 records Processed 541000000 records Processed 542000000 records Processed 543000000 records Processed 544000000 records Processed 545000000 records Processed 546000000 records Processed 547000000 records Processed 548000000 records Processed 549000000 records Processed 550000000 records Processed 551000000 records Processed 552000000 records Processed 553000000 records Processed 554000000 records Processed 555000000 records Processed 556000000 records Processed 557000000 records Processed 558000000 records Processed 559000000 records Processed 560000000 records Processed 561000000 records Processed 562000000 records Processed 563000000 records Processed 564000000 records Processed 565000000 records Processed 566000000 records Processed 567000000 records Processed 568000000 records Processed 569000000 records Processed 570000000 records Processed 571000000 records Processed 572000000 records Processed 573000000 records Processed 574000000 records Processed 575000000 records Processed 576000000 records Processed 577000000 records Processed 578000000 records Processed 579000000 records Processed 580000000 records Processed 581000000 records Processed 582000000 records Processed 583000000 records Processed 584000000 records Processed 585000000 records Processed 586000000 records Processed 587000000 records Processed 588000000 records Processed 589000000 records Processed 590000000 records paired = 293012631 unpaired = 4882080 MERGED PAIRED END READS = 293012631 MATES PROCESSED = 590907342 TOTAL READS = 297894711 DISTINCT READS = 1.16457e+08 DISTINCT COUNTS = 1003 MAX COUNT = 936249 COUNTS OF 1 = 5.22617e+07 MAX TERMS = 100 OBSERVED COUNTS (936250) 1 52261733 2 27906728 3 15111583 4 8196721 5 4552335 6 2633701 7 1603511 8 1025563 9 689604 10 482136 11 351231 12 262224 13 202263 14 160300 15 128138 16 104329 17 87237 18 72757 19 61568 20 52978 21 45106 22 39773 23 34691 24 30652 25 27017 26 24057 27 21528 28 19209 29 17199 30 15584 31 14206 32 12962 33 11849 34 10862 35 10084 36 9449 37 8430 38 7706 39 7126 40 6683 41 6247 42 5896 43 5409 44 5109 45 4742 46 4444 47 4085 48 4034 49 3792 50 3564 51 3316 52 3129 53 2947 54 2860 55 2573 56 2476 57 2319 58 2284 59 2269 60 2030 61 1938 62 1877 63 1731 64 1763 65 1586 66 1560 67 1510 68 1421 69 1416 70 1252 71 1277 72 1209 73 1184 74 1101 75 1108 76 1048 77 961 78 1003 79 947 80 892 81 852 82 764 83 851 84 789 85 757 86 705 87 684 88 677 89 646 90 644 91 639 92 594 93 564 94 546 95 533 96 484 97 455 98 457 99 525 100 449 101 457 102 443 103 420 104 375 105 409 106 360 107 378 108 383 109 338 110 316 111 348 112 322 113 305 114 310 115 291 116 321 117 285 118 287 119 259 120 260 121 243 122 260 123 232 124 231 125 240 126 234 127 236 128 226 129 202 130 201 131 185 132 203 133 204 134 175 135 204 136 197 137 160 138 170 139 199 140 145 141 142 142 166 143 177 144 171 145 175 146 135 147 143 148 134 149 140 150 150 151 124 152 120 153 126 154 114 155 124 156 110 157 140 158 117 159 124 160 128 161 101 162 119 163 121 164 118 165 128 166 84 167 97 168 98 169 87 170 104 171 104 172 87 173 99 174 96 175 72 176 88 177 81 178 87 179 76 180 83 181 75 182 80 183 77 184 68 185 71 186 60 187 66 188 84 189 56 190 69 191 75 192 61 193 60 194 69 195 56 196 62 197 60 198 52 199 59 200 59 201 64 202 66 203 57 204 45 205 59 206 54 207 53 208 56 209 47 210 43 211 50 212 56 213 49 214 32 215 60 216 52 217 46 218 48 219 49 220 35 221 42 222 43 223 46 224 41 225 40 226 39 227 40 228 38 229 35 230 34 231 35 232 38 233 41 234 43 235 33 236 32 237 38 238 30 239 24 240 36 241 27 242 34 243 32 244 30 245 32 246 39 247 27 248 24 249 25 250 36 251 30 252 32 253 35 254 31 255 34 256 27 257 26 258 25 259 11 260 34 261 33 262 20 263 36 264 35 265 26 266 22 267 29 268 23 269 23 270 30 271 30 272 17 273 30 274 22 275 27 276 28 277 19 278 22 279 17 280 23 281 18 282 14 283 16 284 20 285 13 286 17 287 23 288 28 289 25 290 29 291 20 292 27 293 24 294 22 295 20 296 19 297 20 298 15 299 21 300 17 301 21 302 12 303 25 304 18 305 16 306 19 307 24 308 17 309 13 310 12 311 11 312 13 313 13 314 6 315 16 316 11 317 23 318 17 319 12 320 17 321 8 322 10 323 9 324 17 325 19 326 13 327 16 328 10 329 20 330 14 331 16 332 4 333 9 334 18 335 13 336 6 337 14 338 8 339 10 340 6 341 9 342 12 343 21 344 17 345 5 346 12 347 12 348 11 349 9 350 18 351 10 352 8 353 17 354 9 355 7 356 12 357 9 358 10 359 17 360 11 361 11 362 10 363 11 364 7 365 7 366 6 367 6 368 8 369 13 370 5 371 8 372 6 373 10 374 11 375 8 376 13 377 8 378 5 379 6 380 9 381 4 382 5 383 9 384 6 385 7 386 9 387 6 388 9 389 4 390 7 391 17 392 9 393 9 394 6 395 10 396 10 397 4 398 8 399 10 400 7 401 4 402 8 403 8 404 8 405 6 406 11 407 8 408 9 409 4 410 5 411 8 412 6 413 6 414 9 415 4 416 7 417 8 418 5 419 8 420 9 421 9 422 8 423 11 424 7 425 3 426 2 427 6 428 8 429 5 430 5 431 5 432 3 433 7 434 4 435 4 436 3 437 5 438 8 439 5 440 5 441 3 442 3 443 5 444 3 445 3 446 5 447 6 448 5 449 4 450 5 451 5 452 9 453 8 454 5 455 4 456 6 457 6 458 5 459 1 460 3 461 3 462 5 463 4 464 3 465 5 466 7 467 3 468 6 469 5 470 2 471 5 472 7 473 5 475 6 476 5 477 6 478 6 479 3 480 3 481 6 482 8 483 5 484 2 485 1 486 2 487 2 488 7 489 5 490 5 491 2 492 3 493 3 494 2 495 4 496 6 497 3 498 1 499 2 500 1 502 3 503 2 504 6 505 4 506 3 507 2 508 1 509 1 510 4 511 4 512 4 513 2 514 5 515 1 516 2 517 1 518 2 519 3 520 2 522 1 523 4 524 6 525 1 526 2 527 2 528 3 529 4 530 2 531 4 532 2 533 7 534 3 535 2 536 4 537 2 538 1 539 3 540 6 542 5 543 2 544 3 545 3 546 2 547 5 548 3 550 4 552 5 553 2 554 3 555 2 556 4 557 5 558 6 559 2 560 3 561 4 562 3 563 1 564 3 565 3 566 1 567 3 568 1 570 2 571 5 572 2 574 4 575 3 577 1 579 6 581 3 583 1 588 2 589 1 590 3 591 3 592 3 593 4 594 3 595 7 596 1 597 1 599 1 600 1 602 1 603 5 604 2 605 9 606 1 607 3 609 4 610 2 613 3 614 1 615 3 616 4 617 1 618 2 619 2 620 2 622 4 623 1 624 3 625 2 626 3 627 1 628 2 630 5 631 1 632 3 633 1 636 1 637 1 638 3 639 5 640 2 641 1 642 1 643 1 645 3 646 2 648 2 649 3 650 2 651 5 652 4 653 2 654 1 655 4 656 1 659 1 660 1 662 3 664 4 665 1 666 1 667 1 669 2 674 5 678 2 679 2 680 3 681 3 682 1 684 1 687 1 688 3 689 1 692 2 693 2 694 2 695 3 696 1 698 2 699 1 700 1 702 1 703 2 704 4 707 4 708 1 709 1 710 2 711 3 713 2 714 2 718 1 719 3 722 1 723 1 725 3 726 1 729 1 730 2 732 2 733 4 735 2 737 1 738 1 740 1 743 3 744 2 746 1 747 1 748 1 749 4 751 1 753 1 754 1 756 1 757 2 758 1 759 1 760 2 761 2 762 1 764 1 765 1 766 1 767 1 770 2 771 2 772 1 773 2 775 2 776 1 777 2 779 1 781 1 784 2 786 1 788 1 790 1 791 1 792 1 793 1 795 1 797 2 801 2 802 2 803 1 804 2 806 1 809 1 812 6 814 1 819 2 820 1 822 3 823 2 824 2 828 1 829 1 831 1 834 1 836 1 843 1 844 2 845 2 846 1 849 1 850 1 855 2 859 1 862 1 863 1 864 2 865 3 867 1 868 1 870 2 871 1 874 1 876 2 877 1 878 3 880 1 882 1 884 1 886 3 890 2 893 1 897 2 900 1 901 1 902 1 903 1 906 1 908 1 909 2 912 2 915 2 924 4 926 2 928 1 933 1 934 1 935 1 937 1 938 1 941 2 943 2 944 1 946 1 947 1 948 1 951 1 956 1 957 1 959 1 962 1 964 1 970 2 971 1 972 1 976 1 977 1 978 1 987 1 992 1 993 1 996 2 997 1 998 1 999 2 1000 1 1004 1 1006 1 1007 1 1015 2 1016 1 1019 1 1027 1 1030 1 1033 1 1038 1 1039 1 1055 2 1056 1 1059 2 1060 1 1064 2 1070 1 1071 1 1074 2 1075 2 1078 1 1085 1 1087 1 1088 1 1090 1 1093 1 1095 2 1100 2 1110 1 1112 1 1116 1 1120 2 1122 2 1126 1 1139 2 1143 3 1144 2 1145 1 1146 1 1147 1 1149 1 1152 1 1153 1 1154 1 1155 1 1157 1 1158 1 1163 1 1165 2 1166 1 1171 1 1174 1 1175 1 1176 1 1185 1 1187 1 1188 2 1191 2 1192 2 1197 1 1198 2 1199 1 1201 1 1204 2 1208 1 1211 1 1216 1 1218 1 1221 2 1225 1 1229 1 1231 1 1245 1 1255 1 1263 1 1272 1 1281 1 1292 1 1293 1 1295 1 1296 1 1300 1 1301 1 1311 1 1324 1 1329 1 1332 1 1340 2 1343 1 1345 1 1348 1 1351 2 1357 1 1363 1 1369 2 1372 1 1386 1 1391 1 1393 1 1396 1 1401 2 1402 1 1403 1 1410 1 1411 1 1413 2 1416 1 1433 1 1434 1 1439 1 1440 1 1441 1 1444 1 1453 1 1464 1 1468 1 1478 1 1480 1 1485 1 1498 1 1503 1 1512 1 1536 1 1538 1 1570 1 1581 1 1582 1 1608 1 1611 1 1613 1 1622 1 1625 1 1632 1 1638 1 1642 1 1653 1 1663 1 1667 1 1678 1 1680 1 1682 1 1693 1 1705 1 1709 1 1712 1 1719 1 1734 1 1753 1 1767 1 1768 1 1770 1 1771 1 1836 1 1851 1 1861 1 1872 1 1893 1 1927 1 1929 1 1939 1 1954 1 1978 1 1991 1 2031 1 2038 1 2039 1 2089 1 2102 1 2117 1 2140 1 2158 1 2167 1 2179 1 2188 1 2228 1 2233 1 2248 1 2253 1 2321 1 2359 1 2362 1 2435 1 2491 1 2601 1 2682 1 2797 1 3135 1 3326 1 3765 1 3908 1 4134 1 5459 1 5833 1 5856 1 9880 1 11851 1 20726 1 936249 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] 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[COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]