Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/c6f623bdd0de1521c576d3dc3e730e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/5108a761b4ce727c27d0bb1d9b683f/659_bCu-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/c6f623bdd0de1521c576d3dc3e730e/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory