Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/d394d6c174eea44435da8b6fa3da36/fi_workdir/659_zO-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/eaf7d71c02e9793aa3294edd41d114/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/eaf7d71c02e9793aa3294edd41d114/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 19600
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 19600
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:19600
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 4 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC006008.1--ACTR3B HAVANA gene 6117 22982 . + . FI_gene_label "ACTR3B^ENSG00000133627.18" ; ID "AC006008.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; ccdsid "CCDS5934.1" ; exon_id "ENSE00003850575.1" ; exon_number 1 ; gene_id "AC006008.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; gene_name ACTR3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151463.4" ; havana_transcript "OTTHUMT00000322803.2" ; hgnc_id "HGNC:17256" ; level 2 ; orig_coord_info "chr7,152759883,152759926,+" ; protein_id "ENSP00000256001.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC006008.1--ACTR3B^ENST00000256001.13" ; transcript_name "ACTR3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC006008.1--ACTR3B HAVANA mRNA 6117 22982 . + . FI_gene_label "ACTR3B^ENSG00000133627.18" ; ID "AC006008.1--ACTR3B^ENST00000256001.13" ; Parent "AC006008.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; ccdsid "CCDS5934.1" ; exon_id "ENSE00003850575.1" ; exon_number 1 ; gene_id "AC006008.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; gene_name ACTR3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151463.4" ; havana_transcript "OTTHUMT00000322803.2" ; hgnc_id "HGNC:17256" ; level 2 ; orig_coord_info "chr7,152759883,152759926,+" ; protein_id "ENSP00000256001.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC006008.1--ACTR3B^ENST00000256001.13" ; transcript_name "ACTR3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC063965.2--USP9Y HAVANA gene 18483 66720 . + . FI_gene_label "USP9Y^ENSG00000114374.13" ; ID "AC063965.2--USP9Y^USP9Y^ENSG00000114374.13" ; ccdsid "CCDS14781.1" ; exon_id "ENSE00003651478.1" ; exon_number 3 ; gene_id "AC063965.2--USP9Y^USP9Y^ENSG00000114374.13" ; gene_name USP9Y ; gene_type protein_coding ; havana_gene "OTTHUMG00000036469.3" ; havana_transcript "OTTHUMT00000088703.3" ; hgnc_id "HGNC:12633" ; level 2 ; orig_coord_info "chrY,12709448,12709543,+" ; protein_id "ENSP00000342812.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC063965.2--USP9Y^ENST00000338981.7" ; transcript_name "USP9Y-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC063965.2--USP9Y HAVANA mRNA 18483 66720 . + . FI_gene_label "USP9Y^ENSG00000114374.13" ; ID "AC063965.2--USP9Y^ENST00000338981.7" ; Parent "AC063965.2--USP9Y^USP9Y^ENSG00000114374.13" ; ccdsid "CCDS14781.1" ; exon_id "ENSE00003651478.1" ; exon_number 3 ; gene_id "AC063965.2--USP9Y^USP9Y^ENSG00000114374.13" ; gene_name USP9Y ; gene_type protein_coding ; havana_gene "OTTHUMG00000036469.3" ; havana_transcript "OTTHUMT00000088703.3" ; hgnc_id "HGNC:12633" ; level 2 ; orig_coord_info "chrY,12709448,12709543,+" ; protein_id "ENSP00000342812.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC063965.2--USP9Y^ENST00000338981.7" ; transcript_name "USP9Y-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092666.1--ACTR3B HAVANA gene 21121 37986 . + . FI_gene_label "ACTR3B^ENSG00000133627.18" ; ID "AC092666.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; ccdsid "CCDS5934.1" ; exon_id "ENSE00003850575.1" ; exon_number 1 ; gene_id "AC092666.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; gene_name ACTR3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151463.4" ; havana_transcript "OTTHUMT00000322803.2" ; hgnc_id "HGNC:17256" ; level 2 ; orig_coord_info "chr7,152759883,152759926,+" ; protein_id "ENSP00000256001.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092666.1--ACTR3B^ENST00000256001.13" ; transcript_name "ACTR3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092666.1--ACTR3B HAVANA mRNA 21121 37986 . + . FI_gene_label "ACTR3B^ENSG00000133627.18" ; ID "AC092666.1--ACTR3B^ENST00000256001.13" ; Parent "AC092666.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; ccdsid "CCDS5934.1" ; exon_id "ENSE00003850575.1" ; exon_number 1 ; gene_id "AC092666.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; gene_name ACTR3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151463.4" ; havana_transcript "OTTHUMT00000322803.2" ; hgnc_id "HGNC:17256" ; level 2 ; orig_coord_info "chr7,152759883,152759926,+" ; protein_id "ENSP00000256001.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092666.1--ACTR3B^ENST00000256001.13" ; transcript_name "ACTR3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092691.1--LSAMP HAVANA gene 10832 22312 . + . FI_gene_label "LSAMP^ENSG00000185565.12" ; ID "AC092691.1--LSAMP^LSAMP^ENSG00000185565.12" ; exon_id "ENSE00001303696.2" ; exon_number 1 ; gene_id "AC092691.1--LSAMP^LSAMP^ENSG00000185565.12" ; gene_name LSAMP ; gene_type protein_coding ; havana_gene "OTTHUMG00000159308.7" ; havana_transcript "OTTHUMT00000354496.1" ; hgnc_id "HGNC:6705" ; level 2 ; orig_coord_info "chr3,116444877,116444983,-" ; protein_id "ENSP00000328455.4" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AC092691.1--LSAMP^ENST00000333617.8" ; transcript_name "LSAMP-201" ; transcript_support_level 2 ; transcript_type protein_coding
AC092691.1--LSAMP HAVANA mRNA 10832 22312 . + . FI_gene_label "LSAMP^ENSG00000185565.12" ; ID "AC092691.1--LSAMP^ENST00000333617.8" ; Parent "AC092691.1--LSAMP^LSAMP^ENSG00000185565.12" ; exon_id "ENSE00001303696.2" ; exon_number 1 ; gene_id "AC092691.1--LSAMP^LSAMP^ENSG00000185565.12" ; gene_name LSAMP ; gene_type protein_coding ; havana_gene "OTTHUMG00000159308.7" ; havana_transcript "OTTHUMT00000354496.1" ; hgnc_id "HGNC:6705" ; level 2 ; orig_coord_info "chr3,116444877,116444983,-" ; protein_id "ENSP00000328455.4" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AC092691.1--LSAMP^ENST00000333617.8" ; transcript_name "LSAMP-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ANK3--USP9Y HAVANA gene 6838 73970 . + . FI_gene_label "ANK3^ENSG00000151150.22" ; ID "ANK3--USP9Y^ANK3^ENSG00000151150.22" ; ccdsid "CCDS7258.1" ; exon_id "ENSE00002724313.2" ; exon_number 1 ; gene_id "ANK3--USP9Y^ANK3^ENSG00000151150.22" ; gene_name ANK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018288.16" ; havana_transcript "OTTHUMT00000048201.5" ; hgnc_id "HGNC:494" ; level 2 ; orig_coord_info "chr10,60389425,60389538,-" ; protein_id "ENSP00000280772.1" ; tag basic MANE_Select CCDS ; transcript_id "ANK3--USP9Y^ENST00000280772.7" ; transcript_name "ANK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANK3--USP9Y HAVANA mRNA 6838 73970 . + . FI_gene_label "ANK3^ENSG00000151150.22" ; ID "ANK3--USP9Y^ENST00000280772.7" ; Parent "ANK3--USP9Y^ANK3^ENSG00000151150.22" ; ccdsid "CCDS7258.1" ; exon_id "ENSE00002724313.2" ; exon_number 1 ; gene_id "ANK3--USP9Y^ANK3^ENSG00000151150.22" ; gene_name ANK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018288.16" ; havana_transcript "OTTHUMT00000048201.5" ; hgnc_id "HGNC:494" ; level 2 ; orig_coord_info "chr10,60389425,60389538,-" ; protein_id "ENSP00000280772.1" ; tag basic MANE_Select CCDS ; transcript_id "ANK3--USP9Y^ENST00000280772.7" ; transcript_name "ANK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANK3--USP9Y HAVANA gene 89765 138002 . + . FI_gene_label "USP9Y^ENSG00000114374.13" ; ID "ANK3--USP9Y^USP9Y^ENSG00000114374.13" ; ccdsid "CCDS14781.1" ; exon_id "ENSE00003651478.1" ; exon_number 3 ; gene_id "ANK3--USP9Y^USP9Y^ENSG00000114374.13" ; gene_name USP9Y ; gene_type protein_coding ; havana_gene "OTTHUMG00000036469.3" ; havana_transcript "OTTHUMT00000088703.3" ; hgnc_id "HGNC:12633" ; level 2 ; orig_coord_info "chrY,12709448,12709543,+" ; protein_id "ENSP00000342812.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANK3--USP9Y^ENST00000338981.7" ; transcript_name "USP9Y-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANK3--USP9Y HAVANA mRNA 89765 138002 . + . FI_gene_label "USP9Y^ENSG00000114374.13" ; ID "ANK3--USP9Y^ENST00000338981.7" ; Parent "ANK3--USP9Y^USP9Y^ENSG00000114374.13" ; ccdsid "CCDS14781.1" ; exon_id "ENSE00003651478.1" ; exon_number 3 ; gene_id "ANK3--USP9Y^USP9Y^ENSG00000114374.13" ; gene_name USP9Y ; gene_type protein_coding ; havana_gene "OTTHUMG00000036469.3" ; havana_transcript "OTTHUMT00000088703.3" ; hgnc_id "HGNC:12633" ; level 2 ; orig_coord_info "chrY,12709448,12709543,+" ; protein_id "ENSP00000342812.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANK3--USP9Y^ENST00000338981.7" ; transcript_name "USP9Y-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AP3B1--HSD17B4 HAVANA gene 1001 34109 . + . FI_gene_label "AP3B1^ENSG00000132842.14" ; ID "AP3B1--HSD17B4^AP3B1^ENSG00000132842.14" ; ccdsid "CCDS4041.1" ; exon_id "ENSE00002117807.2" ; exon_number 1 ; gene_id "AP3B1--HSD17B4^AP3B1^ENSG00000132842.14" ; gene_name AP3B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000106919.2" ; havana_transcript "OTTHUMT00000225548.2" ; hgnc_id "HGNC:566" ; level 2 ; orig_coord_info "chr5,78294452,78294579,-" ; protein_id "ENSP00000255194.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AP3B1--HSD17B4^ENST00000255194.11" ; transcript_name "AP3B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AP3B1--HSD17B4 HAVANA mRNA 1001 34109 . + . FI_gene_label "AP3B1^ENSG00000132842.14" ; ID "AP3B1--HSD17B4^ENST00000255194.11" ; Parent "AP3B1--HSD17B4^AP3B1^ENSG00000132842.14" ; ccdsid "CCDS4041.1" ; exon_id "ENSE00002117807.2" ; exon_number 1 ; gene_id "AP3B1--HSD17B4^AP3B1^ENSG00000132842.14" ; gene_name AP3B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000106919.2" ; havana_transcript "OTTHUMT00000225548.2" ; hgnc_id "HGNC:566" ; level 2 ; orig_coord_info "chr5,78294452,78294579,-" ; protein_id "ENSP00000255194.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AP3B1--HSD17B4^ENST00000255194.11" ; transcript_name "AP3B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AP3B1--HSD17B4 HAVANA gene 37134 69115 . + . FI_gene_label "HSD17B4^ENSG00000133835.17" ; ID "AP3B1--HSD17B4^HSD17B4^ENSG00000133835.17" ; ccdsid "CCDS56379.1" ; exon_id "ENSE00003821412.1" ; exon_number 1 ; gene_id "AP3B1--HSD17B4^HSD17B4^ENSG00000133835.17" ; gene_name HSD17B4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128899.6" ; havana_transcript "OTTHUMT00000495996.1" ; hgnc_id "HGNC:5213" ; level 2 ; orig_coord_info "chr5,119452754,119452821,+" ; protein_id "ENSP00000411960.3" ; tag CAGE_supported_TSS basic CCDS ; transcript_id "AP3B1--HSD17B4^ENST00000414835.7" ; transcript_name "HSD17B4-201" ; transcript_support_level 2 ; transcript_type protein_coding
AP3B1--HSD17B4 HAVANA mRNA 37134 69115 . + . FI_gene_label "HSD17B4^ENSG00000133835.17" ; ID "AP3B1--HSD17B4^ENST00000414835.7" ; Parent "AP3B1--HSD17B4^HSD17B4^ENSG00000133835.17" ; ccdsid "CCDS56379.1" ; exon_id "ENSE00003821412.1" ; exon_number 1 ; gene_id "AP3B1--HSD17B4^HSD17B4^ENSG00000133835.17" ; gene_name HSD17B4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128899.6" ; havana_transcript "OTTHUMT00000495996.1" ; hgnc_id "HGNC:5213" ; level 2 ; orig_coord_info "chr5,119452754,119452821,+" ; protein_id "ENSP00000411960.3" ; tag CAGE_supported_TSS basic CCDS ; transcript_id "AP3B1--HSD17B4^ENST00000414835.7" ; transcript_name "HSD17B4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AP3B1--RNA5SP190 HAVANA gene 1001 34109 . + . FI_gene_label "AP3B1^ENSG00000132842.14" ; ID "AP3B1--RNA5SP190^AP3B1^ENSG00000132842.14" ; ccdsid "CCDS4041.1" ; exon_id "ENSE00002117807.2" ; exon_number 1 ; gene_id "AP3B1--RNA5SP190^AP3B1^ENSG00000132842.14" ; gene_name AP3B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000106919.2" ; havana_transcript "OTTHUMT00000225548.2" ; hgnc_id "HGNC:566" ; level 2 ; orig_coord_info "chr5,78294452,78294579,-" ; protein_id "ENSP00000255194.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AP3B1--RNA5SP190^ENST00000255194.11" ; transcript_name "AP3B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AP3B1--RNA5SP190 HAVANA mRNA 1001 34109 . + . FI_gene_label "AP3B1^ENSG00000132842.14" ; ID "AP3B1--RNA5SP190^ENST00000255194.11" ; Parent "AP3B1--RNA5SP190^AP3B1^ENSG00000132842.14" ; ccdsid "CCDS4041.1" ; exon_id "ENSE00002117807.2" ; exon_number 1 ; gene_id "AP3B1--RNA5SP190^AP3B1^ENSG00000132842.14" ; gene_name AP3B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000106919.2" ; havana_transcript "OTTHUMT00000225548.2" ; hgnc_id "HGNC:566" ; level 2 ; orig_coord_info "chr5,78294452,78294579,-" ; protein_id "ENSP00000255194.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AP3B1--RNA5SP190^ENST00000255194.11" ; transcript_name "AP3B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AP3B1--TNFAIP8 HAVANA gene 1001 34109 . + . FI_gene_label "AP3B1^ENSG00000132842.14" ; ID "AP3B1--TNFAIP8^AP3B1^ENSG00000132842.14" ; ccdsid "CCDS4041.1" ; exon_id "ENSE00002117807.2" ; exon_number 1 ; gene_id "AP3B1--TNFAIP8^AP3B1^ENSG00000132842.14" ; gene_name AP3B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000106919.2" ; havana_transcript "OTTHUMT00000225548.2" ; hgnc_id "HGNC:566" ; level 2 ; orig_coord_info "chr5,78294452,78294579,-" ; protein_id "ENSP00000255194.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AP3B1--TNFAIP8^ENST00000255194.11" ; transcript_name "AP3B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AP3B1--TNFAIP8 HAVANA mRNA 1001 34109 . + . FI_gene_label "AP3B1^ENSG00000132842.14" ; ID "AP3B1--TNFAIP8^ENST00000255194.11" ; Parent "AP3B1--TNFAIP8^AP3B1^ENSG00000132842.14" ; ccdsid "CCDS4041.1" ; exon_id "ENSE00002117807.2" ; exon_number 1 ; gene_id "AP3B1--TNFAIP8^AP3B1^ENSG00000132842.14" ; gene_name AP3B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000106919.2" ; havana_transcript "OTTHUMT00000225548.2" ; hgnc_id "HGNC:566" ; level 2 ; orig_coord_info "chr5,78294452,78294579,-" ; protein_id "ENSP00000255194.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AP3B1--TNFAIP8^ENST00000255194.11" ; transcript_name "AP3B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AP3B1--TNFAIP8 HAVANA gene 37110 44947 . + . FI_gene_label "TNFAIP8^ENSG00000145779.8" ; ID "AP3B1--TNFAIP8^TNFAIP8^ENSG00000145779.8" ; ccdsid "CCDS47257.1" ; exon_id "ENSE00002129541.1" ; exon_number 1 ; gene_id "AP3B1--TNFAIP8^TNFAIP8^ENSG00000145779.8" ; gene_name TNFAIP8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162949.8" ; havana_transcript "OTTHUMT00000371474.3" ; hgnc_id "HGNC:17260" ; level 2 ; orig_coord_info "chr5,119268907,119268907,+" ; protein_id "ENSP00000274456.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "AP3B1--TNFAIP8^ENST00000274456.6" ; transcript_name "TNFAIP8-201" ; transcript_support_level 1 ; transcript_type protein_coding
AP3B1--TNFAIP8 HAVANA mRNA 37110 44947 . + . FI_gene_label "TNFAIP8^ENSG00000145779.8" ; ID "AP3B1--TNFAIP8^ENST00000274456.6" ; Parent "AP3B1--TNFAIP8^TNFAIP8^ENSG00000145779.8" ; ccdsid "CCDS47257.1" ; exon_id "ENSE00002129541.1" ; exon_number 1 ; gene_id "AP3B1--TNFAIP8^TNFAIP8^ENSG00000145779.8" ; gene_name TNFAIP8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162949.8" ; havana_transcript "OTTHUMT00000371474.3" ; hgnc_id "HGNC:17260" ; level 2 ; orig_coord_info "chr5,119268907,119268907,+" ; protein_id "ENSP00000274456.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "AP3B1--TNFAIP8^ENST00000274456.6" ; transcript_name "TNFAIP8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARRB1--OPHN1 HAVANA gene 30981 76593 . + . FI_gene_label "OPHN1^ENSG00000079482.14" ; ID "ARRB1--OPHN1^OPHN1^ENSG00000079482.14" ; ccdsid "CCDS14388.1" ; exon_id "ENSE00001464287.1" ; exon_number 2 ; gene_id "ARRB1--OPHN1^OPHN1^ENSG00000079482.14" ; gene_name OPHN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021744.2" ; havana_transcript "OTTHUMT00000057011.2" ; hgnc_id "HGNC:8148" ; level 2 ; orig_coord_info "chrX,68432867,68433020,-" ; protein_id "ENSP00000347710.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARRB1--OPHN1^ENST00000355520.6" ; transcript_name "OPHN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARRB1--OPHN1 HAVANA mRNA 30981 76593 . + . FI_gene_label "OPHN1^ENSG00000079482.14" ; ID "ARRB1--OPHN1^ENST00000355520.6" ; Parent "ARRB1--OPHN1^OPHN1^ENSG00000079482.14" ; ccdsid "CCDS14388.1" ; exon_id "ENSE00001464287.1" ; exon_number 2 ; gene_id "ARRB1--OPHN1^OPHN1^ENSG00000079482.14" ; gene_name OPHN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021744.2" ; havana_transcript "OTTHUMT00000057011.2" ; hgnc_id "HGNC:8148" ; level 2 ; orig_coord_info "chrX,68432867,68433020,-" ; protein_id "ENSP00000347710.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARRB1--OPHN1^ENST00000355520.6" ; transcript_name "OPHN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARRB1--OPHN1 HAVANA gene 1001 22085 . + . FI_gene_label "ARRB1^ENSG00000137486.17" ; ID "ARRB1--OPHN1^ARRB1^ENSG00000137486.17" ; ccdsid "CCDS31640.1" ; exon_id "ENSE00002143937.1" ; exon_number 1 ; gene_id "ARRB1--OPHN1^ARRB1^ENSG00000137486.17" ; gene_name ARRB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165444.5" ; havana_transcript "OTTHUMT00000384093.1" ; hgnc_id "HGNC:711" ; level 2 ; orig_coord_info "chr11,75351588,75351607,-" ; protein_id "ENSP00000353124.3" ; tag basic CCDS ; transcript_id "ARRB1--OPHN1^ENST00000360025.7" ; transcript_name "ARRB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARRB1--OPHN1 HAVANA mRNA 1001 22085 . + . FI_gene_label "ARRB1^ENSG00000137486.17" ; ID "ARRB1--OPHN1^ENST00000360025.7" ; Parent "ARRB1--OPHN1^ARRB1^ENSG00000137486.17" ; ccdsid "CCDS31640.1" ; exon_id "ENSE00002143937.1" ; exon_number 1 ; gene_id "ARRB1--OPHN1^ARRB1^ENSG00000137486.17" ; gene_name ARRB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165444.5" ; havana_transcript "OTTHUMT00000384093.1" ; hgnc_id "HGNC:711" ; level 2 ; orig_coord_info "chr11,75351588,75351607,-" ; protein_id "ENSP00000353124.3" ; tag basic CCDS ; transcript_id "ARRB1--OPHN1^ENST00000360025.7" ; transcript_name "ARRB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCL7A--AC068790.9 HAVANA gene 3463 12565 . + . FI_gene_label "BCL7A^ENSG00000110987.9" ; ID "BCL7A--AC068790.9^BCL7A^ENSG00000110987.9" ; ccdsid "CCDS53841.1" ; exon_id "ENSE00001620622.3" ; exon_number 1 ; gene_id "BCL7A--AC068790.9^BCL7A^ENSG00000110987.9" ; gene_name BCL7A ; gene_type protein_coding ; havana_gene "OTTHUMG00000168951.2" ; havana_transcript "OTTHUMT00000401712.1" ; hgnc_id "HGNC:1004" ; level 1 ; orig_coord_info "chr12,122022092,122022183,+" ; protein_id "ENSP00000261822.5" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BCL7A--AC068790.9^ENST00000261822.5" ; transcript_name "BCL7A-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCL7A--AC068790.9 HAVANA mRNA 3463 12565 . + . FI_gene_label "BCL7A^ENSG00000110987.9" ; ID "BCL7A--AC068790.9^ENST00000261822.5" ; Parent "BCL7A--AC068790.9^BCL7A^ENSG00000110987.9" ; ccdsid "CCDS53841.1" ; exon_id "ENSE00001620622.3" ; exon_number 1 ; gene_id "BCL7A--AC068790.9^BCL7A^ENSG00000110987.9" ; gene_name BCL7A ; gene_type protein_coding ; havana_gene "OTTHUMG00000168951.2" ; havana_transcript "OTTHUMT00000401712.1" ; hgnc_id "HGNC:1004" ; level 1 ; orig_coord_info "chr12,122022092,122022183,+" ; protein_id "ENSP00000261822.5" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BCL7A--AC068790.9^ENST00000261822.5" ; transcript_name "BCL7A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCL7A--RFLNA HAVANA gene 3463 12565 . + . FI_gene_label "BCL7A^ENSG00000110987.9" ; ID "BCL7A--RFLNA^BCL7A^ENSG00000110987.9" ; ccdsid "CCDS53841.1" ; exon_id "ENSE00001620622.3" ; exon_number 1 ; gene_id "BCL7A--RFLNA^BCL7A^ENSG00000110987.9" ; gene_name BCL7A ; gene_type protein_coding ; havana_gene "OTTHUMG00000168951.2" ; havana_transcript "OTTHUMT00000401712.1" ; hgnc_id "HGNC:1004" ; level 1 ; orig_coord_info "chr12,122022092,122022183,+" ; protein_id "ENSP00000261822.5" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BCL7A--RFLNA^ENST00000261822.5" ; transcript_name "BCL7A-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCL7A--RFLNA HAVANA mRNA 3463 12565 . + . FI_gene_label "BCL7A^ENSG00000110987.9" ; ID "BCL7A--RFLNA^ENST00000261822.5" ; Parent "BCL7A--RFLNA^BCL7A^ENSG00000110987.9" ; ccdsid "CCDS53841.1" ; exon_id "ENSE00001620622.3" ; exon_number 1 ; gene_id "BCL7A--RFLNA^BCL7A^ENSG00000110987.9" ; gene_name BCL7A ; gene_type protein_coding ; havana_gene "OTTHUMG00000168951.2" ; havana_transcript "OTTHUMT00000401712.1" ; hgnc_id "HGNC:1004" ; level 1 ; orig_coord_info "chr12,122022092,122022183,+" ; protein_id "ENSP00000261822.5" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "BCL7A--RFLNA^ENST00000261822.5" ; transcript_name "BCL7A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCL7A--RFLNA HAVANA gene 19597 25398 . + . FI_gene_label "RFLNA^ENSG00000178882.15" ; ID "BCL7A--RFLNA^RFLNA^ENSG00000178882.15" ; ccdsid "CCDS9258.1" ; exon_id "ENSE00003715616.1" ; exon_number 2 ; gene_id "BCL7A--RFLNA^RFLNA^ENSG00000178882.15" ; gene_name RFLNA ; gene_type protein_coding ; havana_gene "OTTHUMG00000168609.6" ; havana_transcript "OTTHUMT00000400391.1" ; hgnc_id "HGNC:27051" ; level 2 ; orig_coord_info "chr12,124311854,124311927,+" ; protein_id "ENSP00000315626.3" ; tag basic CCDS ; transcript_id "BCL7A--RFLNA^ENST00000324038.6" ; transcript_name "RFLNA-201" ; transcript_support_level 2 ; transcript_type protein_coding
BCL7A--RFLNA HAVANA mRNA 19597 25398 . + . FI_gene_label "RFLNA^ENSG00000178882.15" ; ID "BCL7A--RFLNA^ENST00000324038.6" ; Parent "BCL7A--RFLNA^RFLNA^ENSG00000178882.15" ; ccdsid "CCDS9258.1" ; exon_id "ENSE00003715616.1" ; exon_number 2 ; gene_id "BCL7A--RFLNA^RFLNA^ENSG00000178882.15" ; gene_name RFLNA ; gene_type protein_coding ; havana_gene "OTTHUMG00000168609.6" ; havana_transcript "OTTHUMT00000400391.1" ; hgnc_id "HGNC:27051" ; level 2 ; orig_coord_info "chr12,124311854,124311927,+" ; protein_id "ENSP00000315626.3" ; tag basic CCDS ; transcript_id "BCL7A--RFLNA^ENST00000324038.6" ; transcript_name "RFLNA-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DHRSX--ZMYM3 HAVANA gene 18801 33317 . + . FI_gene_label "ZMYM3^ENSG00000147130.14" ; ID "DHRSX--ZMYM3^ZMYM3^ENSG00000147130.14" ; ccdsid "CCDS14409.1" ; exon_id "ENSE00003677092.1" ; exon_number 2 ; gene_id "DHRSX--ZMYM3^ZMYM3^ENSG00000147130.14" ; gene_name ZMYM3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021799.1" ; havana_transcript "OTTHUMT00000057154.1" ; hgnc_id "HGNC:13054" ; level 2 ; orig_coord_info "chrX,71252589,71253255,-" ; protein_id "ENSP00000322845.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "DHRSX--ZMYM3^ENST00000314425.9" ; transcript_name "ZMYM3-201" ; transcript_support_level 1 ; transcript_type protein_coding
DHRSX--ZMYM3 HAVANA mRNA 18801 33317 . + . FI_gene_label "ZMYM3^ENSG00000147130.14" ; ID "DHRSX--ZMYM3^ENST00000314425.9" ; Parent "DHRSX--ZMYM3^ZMYM3^ENSG00000147130.14" ; ccdsid "CCDS14409.1" ; exon_id "ENSE00003677092.1" ; exon_number 2 ; gene_id "DHRSX--ZMYM3^ZMYM3^ENSG00000147130.14" ; gene_name ZMYM3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021799.1" ; havana_transcript "OTTHUMT00000057154.1" ; hgnc_id "HGNC:13054" ; level 2 ; orig_coord_info "chrX,71252589,71253255,-" ; protein_id "ENSP00000322845.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "DHRSX--ZMYM3^ENST00000314425.9" ; transcript_name "ZMYM3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DHRSX--ZMYM3 HAVANA gene 2046 14794 . + . FI_gene_label "DHRSX^ENSG00000169084.15" ; ID "DHRSX--ZMYM3^DHRSX^ENSG00000169084.15" ; ccdsid "CCDS35195.1" ; exon_id "ENSE00001679842.3" ; exon_number 1 ; gene_id "DHRSX--ZMYM3^DHRSX^ENSG00000169084.15" ; gene_name DHRSX ; gene_type protein_coding ; havana_gene "OTTHUMG00000021068.6" ; havana_transcript "OTTHUMT00000055617.4" ; hgnc_id "HGNC:18399" ; level 2 ; orig_coord_info "chrX,2500817,2500925,-" ; protein_id "ENSP00000334113.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DHRSX--ZMYM3^ENST00000334651.11" ; transcript_name "DHRSX-201" ; transcript_support_level 1 ; transcript_type protein_coding
DHRSX--ZMYM3 HAVANA mRNA 2046 14794 . + . FI_gene_label "DHRSX^ENSG00000169084.15" ; ID "DHRSX--ZMYM3^ENST00000334651.11" ; Parent "DHRSX--ZMYM3^DHRSX^ENSG00000169084.15" ; ccdsid "CCDS35195.1" ; exon_id "ENSE00001679842.3" ; exon_number 1 ; gene_id "DHRSX--ZMYM3^DHRSX^ENSG00000169084.15" ; gene_name DHRSX ; gene_type protein_coding ; havana_gene "OTTHUMG00000021068.6" ; havana_transcript "OTTHUMT00000055617.4" ; hgnc_id "HGNC:18399" ; level 2 ; orig_coord_info "chrX,2500817,2500925,-" ; protein_id "ENSP00000334113.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DHRSX--ZMYM3^ENST00000334651.11" ; transcript_name "DHRSX-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DNA2--AC140113.4 HAVANA gene 1149 22198 . + . FI_gene_label "DNA2^ENSG00000138346.15" ; ID "DNA2--AC140113.4^DNA2^ENSG00000138346.15" ; ccdsid "CCDS44415.2" ; exon_id "ENSE00000933654.2" ; exon_number 1 ; gene_id "DNA2--AC140113.4^DNA2^ENSG00000138346.15" ; gene_name DNA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018352.6" ; havana_transcript "OTTHUMT00000048334.4" ; hgnc_id "HGNC:2939" ; level 2 ; orig_coord_info "chr10,68471791,68471864,-" ; protein_id "ENSP00000351185.3" ; tag non_canonical_U12 basic MANE_Select appris_principal_1 CCDS ; transcript_id "DNA2--AC140113.4^ENST00000358410.8" ; transcript_name "DNA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DNA2--AC140113.4 HAVANA mRNA 1149 22198 . + . FI_gene_label "DNA2^ENSG00000138346.15" ; ID "DNA2--AC140113.4^ENST00000358410.8" ; Parent "DNA2--AC140113.4^DNA2^ENSG00000138346.15" ; ccdsid "CCDS44415.2" ; exon_id "ENSE00000933654.2" ; exon_number 1 ; gene_id "DNA2--AC140113.4^DNA2^ENSG00000138346.15" ; gene_name DNA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018352.6" ; havana_transcript "OTTHUMT00000048334.4" ; hgnc_id "HGNC:2939" ; level 2 ; orig_coord_info "chr10,68471791,68471864,-" ; protein_id "ENSP00000351185.3" ; tag non_canonical_U12 basic MANE_Select appris_principal_1 CCDS ; transcript_id "DNA2--AC140113.4^ENST00000358410.8" ; transcript_name "DNA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DNA2--RNA5-8SP6 HAVANA gene 1149 22198 . + . FI_gene_label "DNA2^ENSG00000138346.15" ; ID "DNA2--RNA5-8SP6^DNA2^ENSG00000138346.15" ; ccdsid "CCDS44415.2" ; exon_id "ENSE00000933654.2" ; exon_number 1 ; gene_id "DNA2--RNA5-8SP6^DNA2^ENSG00000138346.15" ; gene_name DNA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018352.6" ; havana_transcript "OTTHUMT00000048334.4" ; hgnc_id "HGNC:2939" ; level 2 ; orig_coord_info "chr10,68471791,68471864,-" ; protein_id "ENSP00000351185.3" ; tag non_canonical_U12 basic MANE_Select appris_principal_1 CCDS ; transcript_id "DNA2--RNA5-8SP6^ENST00000358410.8" ; transcript_name "DNA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DNA2--RNA5-8SP6 HAVANA mRNA 1149 22198 . + . FI_gene_label "DNA2^ENSG00000138346.15" ; ID "DNA2--RNA5-8SP6^ENST00000358410.8" ; Parent "DNA2--RNA5-8SP6^DNA2^ENSG00000138346.15" ; ccdsid "CCDS44415.2" ; exon_id "ENSE00000933654.2" ; exon_number 1 ; gene_id "DNA2--RNA5-8SP6^DNA2^ENSG00000138346.15" ; gene_name DNA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018352.6" ; havana_transcript "OTTHUMT00000048334.4" ; hgnc_id "HGNC:2939" ; level 2 ; orig_coord_info "chr10,68471791,68471864,-" ; protein_id "ENSP00000351185.3" ; tag non_canonical_U12 basic MANE_Select appris_principal_1 CCDS ; transcript_id "DNA2--RNA5-8SP6^ENST00000358410.8" ; transcript_name "DNA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ELK4--MX1 HAVANA gene 29071 52168 . + . FI_gene_label "MX1^ENSG00000157601.15" ; ID "ELK4--MX1^MX1^ENSG00000157601.15" ; exon_id "ENSE00003795097.1" ; exon_number 5 ; gene_id "ELK4--MX1^MX1^ENSG00000157601.15" ; gene_name MX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086755.8" ; hgnc_id "HGNC:7532" ; level 2 ; orig_coord_info "chr21,41432071,41432175,+" ; protein_id "ENSP00000288383.7" ; tag basic ; transcript_id "ELK4--MX1^ENST00000288383.11" ; transcript_name "MX1-201" ; transcript_support_level 2 ; transcript_type protein_coding
ELK4--MX1 HAVANA mRNA 29071 52168 . + . FI_gene_label "MX1^ENSG00000157601.15" ; ID "ELK4--MX1^ENST00000288383.11" ; Parent "ELK4--MX1^MX1^ENSG00000157601.15" ; exon_id "ENSE00003795097.1" ; exon_number 5 ; gene_id "ELK4--MX1^MX1^ENSG00000157601.15" ; gene_name MX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086755.8" ; hgnc_id "HGNC:7532" ; level 2 ; orig_coord_info "chr21,41432071,41432175,+" ; protein_id "ENSP00000288383.7" ; tag basic ; transcript_id "ELK4--MX1^ENST00000288383.11" ; transcript_name "MX1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ELK4--MX1 HAVANA gene 1050 6203 . + . FI_gene_label "ELK4^ENSG00000158711.14" ; ID "ELK4--MX1^ELK4^ENSG00000158711.14" ; ccdsid "CCDS1457.1" ; exon_id "ENSE00003720094.1" ; exon_number 2 ; gene_id "ELK4--MX1^ELK4^ENSG00000158711.14" ; gene_name ELK4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037221.4" ; havana_transcript "OTTHUMT00000090616.1" ; hgnc_id "HGNC:3326" ; level 2 ; orig_coord_info "chr1,205623676,205623882,-" ; protein_id "ENSP00000289703.4" ; tag basic CCDS ; transcript_id "ELK4--MX1^ENST00000289703.8" ; transcript_name "ELK4-201" ; transcript_support_level 1 ; transcript_type protein_coding
ELK4--MX1 HAVANA mRNA 1050 6203 . + . FI_gene_label "ELK4^ENSG00000158711.14" ; ID "ELK4--MX1^ENST00000289703.8" ; Parent "ELK4--MX1^ELK4^ENSG00000158711.14" ; ccdsid "CCDS1457.1" ; exon_id "ENSE00003720094.1" ; exon_number 2 ; gene_id "ELK4--MX1^ELK4^ENSG00000158711.14" ; gene_name ELK4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037221.4" ; havana_transcript "OTTHUMT00000090616.1" ; hgnc_id "HGNC:3326" ; level 2 ; orig_coord_info "chr1,205623676,205623882,-" ; protein_id "ENSP00000289703.4" ; tag basic CCDS ; transcript_id "ELK4--MX1^ENST00000289703.8" ; transcript_name "ELK4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GLUD1--PHYHIPL HAVANA gene 1001 14611 . + . FI_gene_label "GLUD1^ENSG00000148672.9" ; ID "GLUD1--PHYHIPL^GLUD1^ENSG00000148672.9" ; ccdsid "CCDS7382.1" ; exon_id "ENSE00000986495.2" ; exon_number 1 ; gene_id "GLUD1--PHYHIPL^GLUD1^ENSG00000148672.9" ; gene_name GLUD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018666.2" ; havana_transcript "OTTHUMT00000049188.2" ; hgnc_id "HGNC:4335" ; level 2 ; orig_coord_info "chr10,87094325,87094769,-" ; protein_id "ENSP00000277865.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GLUD1--PHYHIPL^ENST00000277865.5" ; transcript_name "GLUD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GLUD1--PHYHIPL HAVANA mRNA 1001 14611 . + . FI_gene_label "GLUD1^ENSG00000148672.9" ; ID "GLUD1--PHYHIPL^ENST00000277865.5" ; Parent "GLUD1--PHYHIPL^GLUD1^ENSG00000148672.9" ; ccdsid "CCDS7382.1" ; exon_id "ENSE00000986495.2" ; exon_number 1 ; gene_id "GLUD1--PHYHIPL^GLUD1^ENSG00000148672.9" ; gene_name GLUD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018666.2" ; havana_transcript "OTTHUMT00000049188.2" ; hgnc_id "HGNC:4335" ; level 2 ; orig_coord_info "chr10,87094325,87094769,-" ; protein_id "ENSP00000277865.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GLUD1--PHYHIPL^ENST00000277865.5" ; transcript_name "GLUD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GLUD1--PHYHIPL HAVANA gene 18227 26949 . + . FI_gene_label "PHYHIPL^ENSG00000165443.12" ; ID "GLUD1--PHYHIPL^PHYHIPL^ENSG00000165443.12" ; ccdsid "CCDS44405.1" ; exon_id "ENSE00001758230.2" ; exon_number 1 ; gene_id "GLUD1--PHYHIPL^PHYHIPL^ENSG00000165443.12" ; gene_name PHYHIPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000018276.3" ; havana_transcript "OTTHUMT00000048157.1" ; hgnc_id "HGNC:29378" ; level 2 ; orig_coord_info "chr10,59177591,59177618,+" ; protein_id "ENSP00000362985.3" ; tag basic CCDS ; transcript_id "GLUD1--PHYHIPL^ENST00000373878.3" ; transcript_name "PHYHIPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
GLUD1--PHYHIPL HAVANA mRNA 18227 26949 . + . FI_gene_label "PHYHIPL^ENSG00000165443.12" ; ID "GLUD1--PHYHIPL^ENST00000373878.3" ; Parent "GLUD1--PHYHIPL^PHYHIPL^ENSG00000165443.12" ; ccdsid "CCDS44405.1" ; exon_id "ENSE00001758230.2" ; exon_number 1 ; gene_id "GLUD1--PHYHIPL^PHYHIPL^ENSG00000165443.12" ; gene_name PHYHIPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000018276.3" ; havana_transcript "OTTHUMT00000048157.1" ; hgnc_id "HGNC:29378" ; level 2 ; orig_coord_info "chr10,59177591,59177618,+" ; protein_id "ENSP00000362985.3" ; tag basic CCDS ; transcript_id "GLUD1--PHYHIPL^ENST00000373878.3" ; transcript_name "PHYHIPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GOLGA6L10--GOLGA2P6 HAVANA gene 1001 9781 . + . FI_gene_label "GOLGA6L10^ENSG00000278662.5" ; ID "GOLGA6L10--GOLGA2P6^GOLGA6L10^ENSG00000278662.5" ; ccdsid "CCDS45325.2" ; exon_id "ENSE00002255247.2" ; exon_number 1 ; gene_id "GOLGA6L10--GOLGA2P6^GOLGA6L10^ENSG00000278662.5" ; gene_name GOLGA6L10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172580.4" ; havana_transcript "OTTHUMT00000419277.4" ; hgnc_id "HGNC:37228" ; level 2 ; orig_coord_info "chr15,82349292,82349375,-" ; protein_id "ENSP00000479362.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GOLGA6L10--GOLGA2P6^ENST00000610657.2" ; transcript_name "GOLGA6L10-207" ; transcript_support_level 2 ; transcript_type protein_coding
GOLGA6L10--GOLGA2P6 HAVANA mRNA 1001 9781 . + . FI_gene_label "GOLGA6L10^ENSG00000278662.5" ; ID "GOLGA6L10--GOLGA2P6^ENST00000610657.2" ; Parent "GOLGA6L10--GOLGA2P6^GOLGA6L10^ENSG00000278662.5" ; ccdsid "CCDS45325.2" ; exon_id "ENSE00002255247.2" ; exon_number 1 ; gene_id "GOLGA6L10--GOLGA2P6^GOLGA6L10^ENSG00000278662.5" ; gene_name GOLGA6L10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172580.4" ; havana_transcript "OTTHUMT00000419277.4" ; hgnc_id "HGNC:37228" ; level 2 ; orig_coord_info "chr15,82349292,82349375,-" ; protein_id "ENSP00000479362.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GOLGA6L10--GOLGA2P6^ENST00000610657.2" ; transcript_name "GOLGA6L10-207" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
KIAA1217--CHD8 HAVANA gene 14537 34207 . + . FI_gene_label "KIAA1217^ENSG00000120549.18" ; ID "KIAA1217--CHD8^KIAA1217^ENSG00000120549.18" ; ccdsid "CCDS60504.1" ; exon_id "ENSE00003758710.1" ; exon_number 2 ; gene_id "KIAA1217--CHD8^KIAA1217^ENSG00000120549.18" ; gene_name KIAA1217 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017824.8" ; havana_transcript "OTTHUMT00000047220.2" ; hgnc_id "HGNC:25428" ; level 1 ; orig_coord_info "chr10,24473228,24474060,+" ; protein_id "ENSP00000302343.6" ; tag basic appris_alternative_2 exp_conf CCDS ; transcript_id "KIAA1217--CHD8^ENST00000307544.10" ; transcript_name "KIAA1217-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIAA1217--CHD8 HAVANA mRNA 14537 34207 . + . FI_gene_label "KIAA1217^ENSG00000120549.18" ; ID "KIAA1217--CHD8^ENST00000307544.10" ; Parent "KIAA1217--CHD8^KIAA1217^ENSG00000120549.18" ; ccdsid "CCDS60504.1" ; exon_id "ENSE00003758710.1" ; exon_number 2 ; gene_id "KIAA1217--CHD8^KIAA1217^ENSG00000120549.18" ; gene_name KIAA1217 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017824.8" ; havana_transcript "OTTHUMT00000047220.2" ; hgnc_id "HGNC:25428" ; level 1 ; orig_coord_info "chr10,24473228,24474060,+" ; protein_id "ENSP00000302343.6" ; tag basic appris_alternative_2 exp_conf CCDS ; transcript_id "KIAA1217--CHD8^ENST00000307544.10" ; transcript_name "KIAA1217-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIAA1217--CHD8 HAVANA gene 42029 76340 . + . FI_gene_label "CHD8^ENSG00000100888.15" ; ID "KIAA1217--CHD8^CHD8^ENSG00000100888.15" ; ccdsid "CCDS45081.1" ; exon_id "ENSE00003532703.1" ; exon_number 2 ; gene_id "KIAA1217--CHD8^CHD8^ENSG00000100888.15" ; gene_name CHD8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170759.7" ; havana_transcript "OTTHUMT00000410276.3" ; hgnc_id "HGNC:20153" ; level 2 ; orig_coord_info "chr14,21431811,21431816,-" ; protein_id "ENSP00000406288.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "KIAA1217--CHD8^ENST00000430710.8" ; transcript_name "CHD8-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIAA1217--CHD8 HAVANA mRNA 42029 76340 . + . FI_gene_label "CHD8^ENSG00000100888.15" ; ID "KIAA1217--CHD8^ENST00000430710.8" ; Parent "KIAA1217--CHD8^CHD8^ENSG00000100888.15" ; ccdsid "CCDS45081.1" ; exon_id "ENSE00003532703.1" ; exon_number 2 ; gene_id "KIAA1217--CHD8^CHD8^ENSG00000100888.15" ; gene_name CHD8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170759.7" ; havana_transcript "OTTHUMT00000410276.3" ; hgnc_id "HGNC:20153" ; level 2 ; orig_coord_info "chr14,21431811,21431816,-" ; protein_id "ENSP00000406288.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "KIAA1217--CHD8^ENST00000430710.8" ; transcript_name "CHD8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LARGE1--CARD8 HAVANA gene 2421 37281 . + . FI_gene_label "LARGE1^ENSG00000133424.22" ; ID "LARGE1--CARD8^LARGE1^ENSG00000133424.22" ; ccdsid "CCDS13912.1" ; exon_id "ENSE00003623417.1" ; exon_number 3 ; gene_id "LARGE1--CARD8^LARGE1^ENSG00000133424.22" ; gene_name LARGE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150914.20" ; havana_transcript "OTTHUMT00000320515.2" ; hgnc_id "HGNC:6511" ; level 2 ; orig_coord_info "chr22,33761371,33761476,-" ; protein_id "ENSP00000347088.2" ; tag basic appris_principal_1 CCDS ; transcript_id "LARGE1--CARD8^ENST00000354992.7" ; transcript_name "LARGE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LARGE1--CARD8 HAVANA mRNA 2421 37281 . + . FI_gene_label "LARGE1^ENSG00000133424.22" ; ID "LARGE1--CARD8^ENST00000354992.7" ; Parent "LARGE1--CARD8^LARGE1^ENSG00000133424.22" ; ccdsid "CCDS13912.1" ; exon_id "ENSE00003623417.1" ; exon_number 3 ; gene_id "LARGE1--CARD8^LARGE1^ENSG00000133424.22" ; gene_name LARGE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150914.20" ; havana_transcript "OTTHUMT00000320515.2" ; hgnc_id "HGNC:6511" ; level 2 ; orig_coord_info "chr22,33761371,33761476,-" ; protein_id "ENSP00000347088.2" ; tag basic appris_principal_1 CCDS ; transcript_id "LARGE1--CARD8^ENST00000354992.7" ; transcript_name "LARGE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LARGE1--CARD8 ENSEMBL gene 53633 69648 . + . FI_gene_label "CARD8^ENSG00000105483.18" ; ID "LARGE1--CARD8^CARD8^ENSG00000105483.18" ; ccdsid "CCDS54289.1" ; exon_id "ENSE00003566731.1" ; exon_number 1 ; gene_id "LARGE1--CARD8^CARD8^ENSG00000105483.18" ; gene_name CARD8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165047.10" ; hgnc_id "HGNC:17057" ; level 3 ; orig_coord_info "chr19,48240962,48241020,-" ; protein_id "ENSP00000375767.3" ; tag basic appris_principal_4 CCDS ; transcript_id "LARGE1--CARD8^ENST00000391898.7" ; transcript_name "CARD8-202" ; transcript_support_level 1 ; transcript_type protein_coding
LARGE1--CARD8 ENSEMBL mRNA 53633 69648 . + . FI_gene_label "CARD8^ENSG00000105483.18" ; ID "LARGE1--CARD8^ENST00000391898.7" ; Parent "LARGE1--CARD8^CARD8^ENSG00000105483.18" ; ccdsid "CCDS54289.1" ; exon_id "ENSE00003566731.1" ; exon_number 1 ; gene_id "LARGE1--CARD8^CARD8^ENSG00000105483.18" ; gene_name CARD8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165047.10" ; hgnc_id "HGNC:17057" ; level 3 ; orig_coord_info "chr19,48240962,48241020,-" ; protein_id "ENSP00000375767.3" ; tag basic appris_principal_4 CCDS ; transcript_id "LARGE1--CARD8^ENST00000391898.7" ; transcript_name "CARD8-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAPK10--FAHD1 HAVANA gene 4227 80327 . + . FI_gene_label "MAPK10^ENSG00000109339.24" ; ID "MAPK10--FAHD1^MAPK10^ENSG00000109339.24" ; exon_id "ENSE00003470811.1" ; exon_number 4 ; gene_id "MAPK10--FAHD1^MAPK10^ENSG00000109339.24" ; gene_name MAPK10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130604.50" ; havana_transcript "OTTHUMT00000253056.5" ; hgnc_id "HGNC:6872" ; level 2 ; orig_coord_info "chr4,86194336,86194401,-" ; protein_id "ENSP00000309857.4" ; transcript_id "MAPK10--FAHD1^ENST00000310816.8" ; transcript_name "MAPK10-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
MAPK10--FAHD1 HAVANA mRNA 4227 80327 . + . FI_gene_label "MAPK10^ENSG00000109339.24" ; ID "MAPK10--FAHD1^ENST00000310816.8" ; Parent "MAPK10--FAHD1^MAPK10^ENSG00000109339.24" ; exon_id "ENSE00003470811.1" ; exon_number 4 ; gene_id "MAPK10--FAHD1^MAPK10^ENSG00000109339.24" ; gene_name MAPK10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130604.50" ; havana_transcript "OTTHUMT00000253056.5" ; hgnc_id "HGNC:6872" ; level 2 ; orig_coord_info "chr4,86194336,86194401,-" ; protein_id "ENSP00000309857.4" ; transcript_id "MAPK10--FAHD1^ENST00000310816.8" ; transcript_name "MAPK10-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
MAPK10--FAHD1 HAVANA gene 96358 101370 . + . FI_gene_label "FAHD1^ENSG00000180185.11" ; ID "MAPK10--FAHD1^FAHD1^ENSG00000180185.11" ; ccdsid "CCDS32367.1" ; exon_id "ENSE00001492928.4" ; exon_number 1 ; gene_id "MAPK10--FAHD1^FAHD1^ENSG00000180185.11" ; gene_name FAHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128663.2" ; havana_transcript "OTTHUMT00000250552.1" ; hgnc_id "HGNC:14169" ; level 2 ; orig_coord_info "chr16,1827230,1827865,+" ; protein_id "ENSP00000372112.4" ; tag basic CCDS ; transcript_id "MAPK10--FAHD1^ENST00000382666.5" ; transcript_name "FAHD1-201" ; transcript_support_level 2 ; transcript_type protein_coding
MAPK10--FAHD1 HAVANA mRNA 96358 101370 . + . FI_gene_label "FAHD1^ENSG00000180185.11" ; ID "MAPK10--FAHD1^ENST00000382666.5" ; Parent "MAPK10--FAHD1^FAHD1^ENSG00000180185.11" ; ccdsid "CCDS32367.1" ; exon_id "ENSE00001492928.4" ; exon_number 1 ; gene_id "MAPK10--FAHD1^FAHD1^ENSG00000180185.11" ; gene_name FAHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128663.2" ; havana_transcript "OTTHUMT00000250552.1" ; hgnc_id "HGNC:14169" ; level 2 ; orig_coord_info "chr16,1827230,1827865,+" ; protein_id "ENSP00000372112.4" ; tag basic CCDS ; transcript_id "MAPK10--FAHD1^ENST00000382666.5" ; transcript_name "FAHD1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MX1--OR13J1 HAVANA gene 5638 28735 . + . FI_gene_label "MX1^ENSG00000157601.15" ; ID "MX1--OR13J1^MX1^ENSG00000157601.15" ; exon_id "ENSE00003795097.1" ; exon_number 5 ; gene_id "MX1--OR13J1^MX1^ENSG00000157601.15" ; gene_name MX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086755.8" ; hgnc_id "HGNC:7532" ; level 2 ; orig_coord_info "chr21,41432071,41432175,+" ; protein_id "ENSP00000288383.7" ; tag basic ; transcript_id "MX1--OR13J1^ENST00000288383.11" ; transcript_name "MX1-201" ; transcript_support_level 2 ; transcript_type protein_coding
MX1--OR13J1 HAVANA mRNA 5638 28735 . + . FI_gene_label "MX1^ENSG00000157601.15" ; ID "MX1--OR13J1^ENST00000288383.11" ; Parent "MX1--OR13J1^MX1^ENSG00000157601.15" ; exon_id "ENSE00003795097.1" ; exon_number 5 ; gene_id "MX1--OR13J1^MX1^ENSG00000157601.15" ; gene_name MX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086755.8" ; hgnc_id "HGNC:7532" ; level 2 ; orig_coord_info "chr21,41432071,41432175,+" ; protein_id "ENSP00000288383.7" ; tag basic ; transcript_id "MX1--OR13J1^ENST00000288383.11" ; transcript_name "MX1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MX1--OR13J1 HAVANA gene 35009 36347 . + . FI_gene_label "OR13J1^ENSG00000168828.5" ; ID "MX1--OR13J1^OR13J1^ENSG00000168828.5" ; ccdsid "CCDS35011.1" ; exon_id "ENSE00001475746.3" ; exon_number 1 ; gene_id "MX1--OR13J1^OR13J1^ENSG00000168828.5" ; gene_name OR13J1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019879.1" ; havana_transcript "OTTHUMT00000052381.1" ; hgnc_id "HGNC:15108" ; level 2 ; orig_coord_info "chr9,35869466,35870401,-" ; protein_id "ENSP00000367219.2" ; tag basic appris_principal_1 CCDS ; transcript_id "MX1--OR13J1^ENST00000377981.3" ; transcript_name "OR13J1-201" ; transcript_support_level NA ; transcript_type protein_coding
MX1--OR13J1 HAVANA mRNA 35009 36347 . + . FI_gene_label "OR13J1^ENSG00000168828.5" ; ID "MX1--OR13J1^ENST00000377981.3" ; Parent "MX1--OR13J1^OR13J1^ENSG00000168828.5" ; ccdsid "CCDS35011.1" ; exon_id "ENSE00001475746.3" ; exon_number 1 ; gene_id "MX1--OR13J1^OR13J1^ENSG00000168828.5" ; gene_name OR13J1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019879.1" ; havana_transcript "OTTHUMT00000052381.1" ; hgnc_id "HGNC:15108" ; level 2 ; orig_coord_info "chr9,35869466,35870401,-" ; protein_id "ENSP00000367219.2" ; tag basic appris_principal_1 CCDS ; transcript_id "MX1--OR13J1^ENST00000377981.3" ; transcript_name "OR13J1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
NLN--TMEM232 HAVANA gene 1001 25029 . + . FI_gene_label "NLN^ENSG00000123213.23" ; ID "NLN--TMEM232^NLN^ENSG00000123213.23" ; ccdsid "CCDS3989.1" ; exon_id "ENSE00001487158.6" ; exon_number 1 ; gene_id "NLN--TMEM232^NLN^ENSG00000123213.23" ; gene_name NLN ; gene_type protein_coding ; havana_gene "OTTHUMG00000097803.7" ; havana_transcript "OTTHUMT00000215060.2" ; hgnc_id "HGNC:16058" ; level 2 ; orig_coord_info "chr5,65722374,65722414,+" ; protein_id "ENSP00000370372.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NLN--TMEM232^ENST00000380985.10" ; transcript_name "NLN-201" ; transcript_support_level 1 ; transcript_type protein_coding
NLN--TMEM232 HAVANA mRNA 1001 25029 . + . FI_gene_label "NLN^ENSG00000123213.23" ; ID "NLN--TMEM232^ENST00000380985.10" ; Parent "NLN--TMEM232^NLN^ENSG00000123213.23" ; ccdsid "CCDS3989.1" ; exon_id "ENSE00001487158.6" ; exon_number 1 ; gene_id "NLN--TMEM232^NLN^ENSG00000123213.23" ; gene_name NLN ; gene_type protein_coding ; havana_gene "OTTHUMG00000097803.7" ; havana_transcript "OTTHUMT00000215060.2" ; hgnc_id "HGNC:16058" ; level 2 ; orig_coord_info "chr5,65722374,65722414,+" ; protein_id "ENSP00000370372.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NLN--TMEM232^ENST00000380985.10" ; transcript_name "NLN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NLN--TMEM232 HAVANA gene 33563 56892 . + . FI_gene_label "TMEM232^ENSG00000186952.15" ; ID "NLN--TMEM232^TMEM232^ENSG00000186952.15" ; ccdsid "CCDS47253.2" ; exon_id "ENSE00003645750.1" ; exon_number 2 ; gene_id "NLN--TMEM232^TMEM232^ENSG00000186952.15" ; gene_name TMEM232 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163297.10" ; havana_transcript "OTTHUMT00000372488.3" ; hgnc_id "HGNC:37270" ; level 2 ; orig_coord_info "chr5,110667228,110667352,-" ; protein_id "ENSP00000401477.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NLN--TMEM232^ENST00000455884.7" ; transcript_name "TMEM232-201" ; transcript_support_level 2 ; transcript_type protein_coding
NLN--TMEM232 HAVANA mRNA 33563 56892 . + . FI_gene_label "TMEM232^ENSG00000186952.15" ; ID "NLN--TMEM232^ENST00000455884.7" ; Parent "NLN--TMEM232^TMEM232^ENSG00000186952.15" ; ccdsid "CCDS47253.2" ; exon_id "ENSE00003645750.1" ; exon_number 2 ; gene_id "NLN--TMEM232^TMEM232^ENSG00000186952.15" ; gene_name TMEM232 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163297.10" ; havana_transcript "OTTHUMT00000372488.3" ; hgnc_id "HGNC:37270" ; level 2 ; orig_coord_info "chr5,110667228,110667352,-" ; protein_id "ENSP00000401477.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NLN--TMEM232^ENST00000455884.7" ; transcript_name "TMEM232-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA7--PCDHA13 HAVANA gene 6923 15363 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA7--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA7--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA7--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA7--PCDHA13 HAVANA mRNA 6923 15363 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA7--PCDHA13^ENST00000289272.3" ; Parent "PCDHA7--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA7--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA7--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA7--PCDHA13 HAVANA gene 1001 3922 . + . FI_gene_label "PCDHA7^ENSG00000204963.6" ; ID "PCDHA7--PCDHA13^PCDHA7^ENSG00000204963.6" ; exon_id "ENSE00001519049.3" ; exon_number 1 ; gene_id "PCDHA7--PCDHA13^PCDHA7^ENSG00000204963.6" ; gene_name PCDHA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163371.4" ; havana_transcript "OTTHUMT00000477551.1" ; hgnc_id "HGNC:8673" ; level 2 ; orig_coord_info "chr5,140834384,140836750,+" ; protein_id "ENSP00000349344.5" ; tag basic ; transcript_id "PCDHA7--PCDHA13^ENST00000356878.5" ; transcript_name "PCDHA7-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA7--PCDHA13 HAVANA mRNA 1001 3922 . + . FI_gene_label "PCDHA7^ENSG00000204963.6" ; ID "PCDHA7--PCDHA13^ENST00000356878.5" ; Parent "PCDHA7--PCDHA13^PCDHA7^ENSG00000204963.6" ; exon_id "ENSE00001519049.3" ; exon_number 1 ; gene_id "PCDHA7--PCDHA13^PCDHA7^ENSG00000204963.6" ; gene_name PCDHA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163371.4" ; havana_transcript "OTTHUMT00000477551.1" ; hgnc_id "HGNC:8673" ; level 2 ; orig_coord_info "chr5,140834384,140836750,+" ; protein_id "ENSP00000349344.5" ; tag basic ; transcript_id "PCDHA7--PCDHA13^ENST00000356878.5" ; transcript_name "PCDHA7-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA7--PCDHAC1 HAVANA gene 6923 16938 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA7--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA7--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA7--PCDHAC1 HAVANA mRNA 6923 16938 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA7--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA7--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA7--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA7--PCDHAC1 HAVANA gene 1001 3922 . + . FI_gene_label "PCDHA7^ENSG00000204963.6" ; ID "PCDHA7--PCDHAC1^PCDHA7^ENSG00000204963.6" ; exon_id "ENSE00001519049.3" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC1^PCDHA7^ENSG00000204963.6" ; gene_name PCDHA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163371.4" ; havana_transcript "OTTHUMT00000477551.1" ; hgnc_id "HGNC:8673" ; level 2 ; orig_coord_info "chr5,140834384,140836750,+" ; protein_id "ENSP00000349344.5" ; tag basic ; transcript_id "PCDHA7--PCDHAC1^ENST00000356878.5" ; transcript_name "PCDHA7-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA7--PCDHAC1 HAVANA mRNA 1001 3922 . + . FI_gene_label "PCDHA7^ENSG00000204963.6" ; ID "PCDHA7--PCDHAC1^ENST00000356878.5" ; Parent "PCDHA7--PCDHAC1^PCDHA7^ENSG00000204963.6" ; exon_id "ENSE00001519049.3" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC1^PCDHA7^ENSG00000204963.6" ; gene_name PCDHA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163371.4" ; havana_transcript "OTTHUMT00000477551.1" ; hgnc_id "HGNC:8673" ; level 2 ; orig_coord_info "chr5,140834384,140836750,+" ; protein_id "ENSP00000349344.5" ; tag basic ; transcript_id "PCDHA7--PCDHAC1^ENST00000356878.5" ; transcript_name "PCDHA7-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA7--PCDHAC2 HAVANA gene 6929 17664 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA7--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA7--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA7--PCDHAC2 HAVANA mRNA 6929 17664 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA7--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA7--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA7--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA7--PCDHAC2 HAVANA gene 1001 3922 . + . FI_gene_label "PCDHA7^ENSG00000204963.6" ; ID "PCDHA7--PCDHAC2^PCDHA7^ENSG00000204963.6" ; exon_id "ENSE00001519049.3" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC2^PCDHA7^ENSG00000204963.6" ; gene_name PCDHA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163371.4" ; havana_transcript "OTTHUMT00000477551.1" ; hgnc_id "HGNC:8673" ; level 2 ; orig_coord_info "chr5,140834384,140836750,+" ; protein_id "ENSP00000349344.5" ; tag basic ; transcript_id "PCDHA7--PCDHAC2^ENST00000356878.5" ; transcript_name "PCDHA7-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA7--PCDHAC2 HAVANA mRNA 1001 3922 . + . FI_gene_label "PCDHA7^ENSG00000204963.6" ; ID "PCDHA7--PCDHAC2^ENST00000356878.5" ; Parent "PCDHA7--PCDHAC2^PCDHA7^ENSG00000204963.6" ; exon_id "ENSE00001519049.3" ; exon_number 1 ; gene_id "PCDHA7--PCDHAC2^PCDHA7^ENSG00000204963.6" ; gene_name PCDHA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163371.4" ; havana_transcript "OTTHUMT00000477551.1" ; hgnc_id "HGNC:8673" ; level 2 ; orig_coord_info "chr5,140834384,140836750,+" ; protein_id "ENSP00000349344.5" ; tag basic ; transcript_id "PCDHA7--PCDHAC2^ENST00000356878.5" ; transcript_name "PCDHA7-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA10 HAVANA gene 8733 18186 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA10 HAVANA mRNA 8733 18186 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA10 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA10^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA10 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA10^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA10^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA11 HAVANA gene 8548 17353 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA11 HAVANA mRNA 8548 17353 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA11 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA11^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA11 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA11^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA11^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA12 HAVANA gene 8544 16436 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA12 HAVANA mRNA 8544 16436 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA12 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA12^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA12 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA12^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA12^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA8 HAVANA gene 11020 20200 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA8 HAVANA mRNA 11020 20200 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA8 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA8^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA8 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA8^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA8^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA9 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA9^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA9 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA9^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA9^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA9 HAVANA gene 8565 16292 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA9 HAVANA mRNA 8565 16292 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB6 HAVANA gene 8726 18325 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGB6 HAVANA mRNA 8726 18325 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB6 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB6^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGB6 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB6^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB6^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB7 HAVANA gene 8576 16505 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGB7 HAVANA mRNA 8576 16505 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB7 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB7^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGB7 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB7^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB7^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC3 HAVANA gene 8563 18749 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC3 HAVANA mRNA 8563 18749 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC3 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC3^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC3 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC3^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC3^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC4 HAVANA gene 8721 16517 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC4 HAVANA mRNA 8721 16517 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC4 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC4^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC4 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC4^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC4^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC5 HAVANA gene 8544 16569 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC5 HAVANA mRNA 8544 16569 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC5 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC5^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC5 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC5^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC5^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
SAMHD1--AL021937.4 HAVANA gene 1001 23400 . + . FI_gene_label "SAMHD1^ENSG00000101347.10" ; ID "SAMHD1--AL021937.4^SAMHD1^ENSG00000101347.10" ; ccdsid "CCDS86953.1" ; exon_id "ENSE00001898623.1" ; exon_number 1 ; gene_id "SAMHD1--AL021937.4^SAMHD1^ENSG00000101347.10" ; gene_name SAMHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032402.6" ; havana_transcript "OTTHUMT00000493886.3" ; hgnc_id "HGNC:15925" ; level 2 ; orig_coord_info "chr20,36951436,36951643,-" ; protein_id "ENSP00000262878.5" ; tag basic CCDS ; transcript_id "SAMHD1--AL021937.4^ENST00000262878.5" ; transcript_name "SAMHD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMHD1--AL021937.4 HAVANA mRNA 1001 23400 . + . FI_gene_label "SAMHD1^ENSG00000101347.10" ; ID "SAMHD1--AL021937.4^ENST00000262878.5" ; Parent "SAMHD1--AL021937.4^SAMHD1^ENSG00000101347.10" ; ccdsid "CCDS86953.1" ; exon_id "ENSE00001898623.1" ; exon_number 1 ; gene_id "SAMHD1--AL021937.4^SAMHD1^ENSG00000101347.10" ; gene_name SAMHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032402.6" ; havana_transcript "OTTHUMT00000493886.3" ; hgnc_id "HGNC:15925" ; level 2 ; orig_coord_info "chr20,36951436,36951643,-" ; protein_id "ENSP00000262878.5" ; tag basic CCDS ; transcript_id "SAMHD1--AL021937.4^ENST00000262878.5" ; transcript_name "SAMHD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMHD1--RFPL3S HAVANA gene 1001 23400 . + . FI_gene_label "SAMHD1^ENSG00000101347.10" ; ID "SAMHD1--RFPL3S^SAMHD1^ENSG00000101347.10" ; ccdsid "CCDS86953.1" ; exon_id "ENSE00001898623.1" ; exon_number 1 ; gene_id "SAMHD1--RFPL3S^SAMHD1^ENSG00000101347.10" ; gene_name SAMHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032402.6" ; havana_transcript "OTTHUMT00000493886.3" ; hgnc_id "HGNC:15925" ; level 2 ; orig_coord_info "chr20,36951436,36951643,-" ; protein_id "ENSP00000262878.5" ; tag basic CCDS ; transcript_id "SAMHD1--RFPL3S^ENST00000262878.5" ; transcript_name "SAMHD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMHD1--RFPL3S HAVANA mRNA 1001 23400 . + . FI_gene_label "SAMHD1^ENSG00000101347.10" ; ID "SAMHD1--RFPL3S^ENST00000262878.5" ; Parent "SAMHD1--RFPL3S^SAMHD1^ENSG00000101347.10" ; ccdsid "CCDS86953.1" ; exon_id "ENSE00001898623.1" ; exon_number 1 ; gene_id "SAMHD1--RFPL3S^SAMHD1^ENSG00000101347.10" ; gene_name SAMHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032402.6" ; havana_transcript "OTTHUMT00000493886.3" ; hgnc_id "HGNC:15925" ; level 2 ; orig_coord_info "chr20,36951436,36951643,-" ; protein_id "ENSP00000262878.5" ; tag basic CCDS ; transcript_id "SAMHD1--RFPL3S^ENST00000262878.5" ; transcript_name "SAMHD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMHD1--RTCB HAVANA gene 26747 39960 . + . FI_gene_label "RTCB^ENSG00000100220.12" ; ID "SAMHD1--RTCB^RTCB^ENSG00000100220.12" ; ccdsid "CCDS13905.1" ; exon_id "ENSE00001830068.2" ; exon_number 1 ; gene_id "SAMHD1--RTCB^RTCB^ENSG00000100220.12" ; gene_name RTCB ; gene_type protein_coding ; havana_gene "OTTHUMG00000030300.8" ; havana_transcript "OTTHUMT00000075188.4" ; hgnc_id "HGNC:26935" ; level 2 ; orig_coord_info "chr22,32412064,32412156,-" ; protein_id "ENSP00000216038.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SAMHD1--RTCB^ENST00000216038.6" ; transcript_name "RTCB-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMHD1--RTCB HAVANA mRNA 26747 39960 . + . FI_gene_label "RTCB^ENSG00000100220.12" ; ID "SAMHD1--RTCB^ENST00000216038.6" ; Parent "SAMHD1--RTCB^RTCB^ENSG00000100220.12" ; ccdsid "CCDS13905.1" ; exon_id "ENSE00001830068.2" ; exon_number 1 ; gene_id "SAMHD1--RTCB^RTCB^ENSG00000100220.12" ; gene_name RTCB ; gene_type protein_coding ; havana_gene "OTTHUMG00000030300.8" ; havana_transcript "OTTHUMT00000075188.4" ; hgnc_id "HGNC:26935" ; level 2 ; orig_coord_info "chr22,32412064,32412156,-" ; protein_id "ENSP00000216038.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SAMHD1--RTCB^ENST00000216038.6" ; transcript_name "RTCB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMHD1--RTCB HAVANA gene 1001 23400 . + . FI_gene_label "SAMHD1^ENSG00000101347.10" ; ID "SAMHD1--RTCB^SAMHD1^ENSG00000101347.10" ; ccdsid "CCDS86953.1" ; exon_id "ENSE00001898623.1" ; exon_number 1 ; gene_id "SAMHD1--RTCB^SAMHD1^ENSG00000101347.10" ; gene_name SAMHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032402.6" ; havana_transcript "OTTHUMT00000493886.3" ; hgnc_id "HGNC:15925" ; level 2 ; orig_coord_info "chr20,36951436,36951643,-" ; protein_id "ENSP00000262878.5" ; tag basic CCDS ; transcript_id "SAMHD1--RTCB^ENST00000262878.5" ; transcript_name "SAMHD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMHD1--RTCB HAVANA mRNA 1001 23400 . + . FI_gene_label "SAMHD1^ENSG00000101347.10" ; ID "SAMHD1--RTCB^ENST00000262878.5" ; Parent "SAMHD1--RTCB^SAMHD1^ENSG00000101347.10" ; ccdsid "CCDS86953.1" ; exon_id "ENSE00001898623.1" ; exon_number 1 ; gene_id "SAMHD1--RTCB^SAMHD1^ENSG00000101347.10" ; gene_name SAMHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032402.6" ; havana_transcript "OTTHUMT00000493886.3" ; hgnc_id "HGNC:15925" ; level 2 ; orig_coord_info "chr20,36951436,36951643,-" ; protein_id "ENSP00000262878.5" ; tag basic CCDS ; transcript_id "SAMHD1--RTCB^ENST00000262878.5" ; transcript_name "SAMHD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SEC24D--METTL14-DT HAVANA gene 2619 37831 . + . FI_gene_label "SEC24D^ENSG00000150961.15" ; ID "SEC24D--METTL14-DT^SEC24D^ENSG00000150961.15" ; ccdsid "CCDS3710.1" ; exon_id "ENSE00003680581.1" ; exon_number 2 ; gene_id "SEC24D--METTL14-DT^SEC24D^ENSG00000150961.15" ; gene_name SEC24D ; gene_type protein_coding ; havana_gene "OTTHUMG00000132957.8" ; havana_transcript "OTTHUMT00000256514.5" ; hgnc_id "HGNC:10706" ; level 2 ; orig_coord_info "chr4,118833579,118833696,-" ; protein_id "ENSP00000280551.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SEC24D--METTL14-DT^ENST00000280551.11" ; transcript_name "SEC24D-201" ; transcript_support_level 1 ; transcript_type protein_coding
SEC24D--METTL14-DT HAVANA mRNA 2619 37831 . + . FI_gene_label "SEC24D^ENSG00000150961.15" ; ID "SEC24D--METTL14-DT^ENST00000280551.11" ; Parent "SEC24D--METTL14-DT^SEC24D^ENSG00000150961.15" ; ccdsid "CCDS3710.1" ; exon_id "ENSE00003680581.1" ; exon_number 2 ; gene_id "SEC24D--METTL14-DT^SEC24D^ENSG00000150961.15" ; gene_name SEC24D ; gene_type protein_coding ; havana_gene "OTTHUMG00000132957.8" ; havana_transcript "OTTHUMT00000256514.5" ; hgnc_id "HGNC:10706" ; level 2 ; orig_coord_info "chr4,118833579,118833696,-" ; protein_id "ENSP00000280551.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SEC24D--METTL14-DT^ENST00000280551.11" ; transcript_name "SEC24D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC45A3--ERG HAVANA gene 15411 34720 . + . FI_gene_label "ERG^ENSG00000157554.19" ; ID "SLC45A3--ERG^ERG^ENSG00000157554.19" ; ccdsid "CCDS13658.1" ; exon_id "ENSE00001931764.2" ; exon_number 1 ; gene_id "SLC45A3--ERG^ERG^ENSG00000157554.19" ; gene_name ERG ; gene_type protein_coding ; havana_gene "OTTHUMG00000090767.4" ; havana_transcript "OTTHUMT00000207531.2" ; hgnc_id "HGNC:3446" ; level 2 ; orig_coord_info "chr21,38498363,38498380,-" ; protein_id "ENSP00000288319.7" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC45A3--ERG^ENST00000288319.12" ; transcript_name "ERG-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC45A3--ERG HAVANA mRNA 15411 34720 . + . FI_gene_label "ERG^ENSG00000157554.19" ; ID "SLC45A3--ERG^ENST00000288319.12" ; Parent "SLC45A3--ERG^ERG^ENSG00000157554.19" ; ccdsid "CCDS13658.1" ; exon_id "ENSE00001931764.2" ; exon_number 1 ; gene_id "SLC45A3--ERG^ERG^ENSG00000157554.19" ; gene_name ERG ; gene_type protein_coding ; havana_gene "OTTHUMG00000090767.4" ; havana_transcript "OTTHUMT00000207531.2" ; hgnc_id "HGNC:3446" ; level 2 ; orig_coord_info "chr21,38498363,38498380,-" ; protein_id "ENSP00000288319.7" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC45A3--ERG^ENST00000288319.12" ; transcript_name "ERG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC45A3--ERG HAVANA gene 1001 7963 . + . FI_gene_label "SLC45A3^ENSG00000158715.6" ; ID "SLC45A3--ERG^SLC45A3^ENSG00000158715.6" ; ccdsid "CCDS1458.1" ; exon_id "ENSE00001443627.1" ; exon_number 2 ; gene_id "SLC45A3--ERG^SLC45A3^ENSG00000158715.6" ; gene_name SLC45A3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037223.2" ; havana_transcript "OTTHUMT00000090619.2" ; hgnc_id "HGNC:8642" ; level 2 ; orig_coord_info "chr1,205664485,205664656,-" ; protein_id "ENSP00000356113.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC45A3--ERG^ENST00000367145.4" ; transcript_name "SLC45A3-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC45A3--ERG HAVANA mRNA 1001 7963 . + . FI_gene_label "SLC45A3^ENSG00000158715.6" ; ID "SLC45A3--ERG^ENST00000367145.4" ; Parent "SLC45A3--ERG^SLC45A3^ENSG00000158715.6" ; ccdsid "CCDS1458.1" ; exon_id "ENSE00001443627.1" ; exon_number 2 ; gene_id "SLC45A3--ERG^SLC45A3^ENSG00000158715.6" ; gene_name SLC45A3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037223.2" ; havana_transcript "OTTHUMT00000090619.2" ; hgnc_id "HGNC:8642" ; level 2 ; orig_coord_info "chr1,205664485,205664656,-" ; protein_id "ENSP00000356113.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC45A3--ERG^ENST00000367145.4" ; transcript_name "SLC45A3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TNFAIP8--AC008782.1 HAVANA gene 1001 8838 . + . FI_gene_label "TNFAIP8^ENSG00000145779.8" ; ID "TNFAIP8--AC008782.1^TNFAIP8^ENSG00000145779.8" ; ccdsid "CCDS47257.1" ; exon_id "ENSE00002129541.1" ; exon_number 1 ; gene_id "TNFAIP8--AC008782.1^TNFAIP8^ENSG00000145779.8" ; gene_name TNFAIP8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162949.8" ; havana_transcript "OTTHUMT00000371474.3" ; hgnc_id "HGNC:17260" ; level 2 ; orig_coord_info "chr5,119268907,119268907,+" ; protein_id "ENSP00000274456.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "TNFAIP8--AC008782.1^ENST00000274456.6" ; transcript_name "TNFAIP8-201" ; transcript_support_level 1 ; transcript_type protein_coding
TNFAIP8--AC008782.1 HAVANA mRNA 1001 8838 . + . FI_gene_label "TNFAIP8^ENSG00000145779.8" ; ID "TNFAIP8--AC008782.1^ENST00000274456.6" ; Parent "TNFAIP8--AC008782.1^TNFAIP8^ENSG00000145779.8" ; ccdsid "CCDS47257.1" ; exon_id "ENSE00002129541.1" ; exon_number 1 ; gene_id "TNFAIP8--AC008782.1^TNFAIP8^ENSG00000145779.8" ; gene_name TNFAIP8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162949.8" ; havana_transcript "OTTHUMT00000371474.3" ; hgnc_id "HGNC:17260" ; level 2 ; orig_coord_info "chr5,119268907,119268907,+" ; protein_id "ENSP00000274456.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "TNFAIP8--AC008782.1^ENST00000274456.6" ; transcript_name "TNFAIP8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TNFAIP8--SLC25A46 HAVANA gene 1001 8838 . + . FI_gene_label "TNFAIP8^ENSG00000145779.8" ; ID "TNFAIP8--SLC25A46^TNFAIP8^ENSG00000145779.8" ; ccdsid "CCDS47257.1" ; exon_id "ENSE00002129541.1" ; exon_number 1 ; gene_id "TNFAIP8--SLC25A46^TNFAIP8^ENSG00000145779.8" ; gene_name TNFAIP8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162949.8" ; havana_transcript "OTTHUMT00000371474.3" ; hgnc_id "HGNC:17260" ; level 2 ; orig_coord_info "chr5,119268907,119268907,+" ; protein_id "ENSP00000274456.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "TNFAIP8--SLC25A46^ENST00000274456.6" ; transcript_name "TNFAIP8-201" ; transcript_support_level 1 ; transcript_type protein_coding
TNFAIP8--SLC25A46 HAVANA mRNA 1001 8838 . + . FI_gene_label "TNFAIP8^ENSG00000145779.8" ; ID "TNFAIP8--SLC25A46^ENST00000274456.6" ; Parent "TNFAIP8--SLC25A46^TNFAIP8^ENSG00000145779.8" ; ccdsid "CCDS47257.1" ; exon_id "ENSE00002129541.1" ; exon_number 1 ; gene_id "TNFAIP8--SLC25A46^TNFAIP8^ENSG00000145779.8" ; gene_name TNFAIP8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162949.8" ; havana_transcript "OTTHUMT00000371474.3" ; hgnc_id "HGNC:17260" ; level 2 ; orig_coord_info "chr5,119268907,119268907,+" ; protein_id "ENSP00000274456.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "TNFAIP8--SLC25A46^ENST00000274456.6" ; transcript_name "TNFAIP8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TNFAIP8--SLC25A46 HAVANA gene 19004 34432 . + . FI_gene_label "SLC25A46^ENSG00000164209.17" ; ID "TNFAIP8--SLC25A46^SLC25A46^ENSG00000164209.17" ; ccdsid "CCDS4100.1" ; exon_id "ENSE00001949622.3" ; exon_number 1 ; gene_id "TNFAIP8--SLC25A46^SLC25A46^ENSG00000164209.17" ; gene_name SLC25A46 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128794.8" ; havana_transcript "OTTHUMT00000250721.6" ; hgnc_id "HGNC:25198" ; level 2 ; orig_coord_info "chr5,110739120,110739402,+" ; protein_id "ENSP00000348211.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TNFAIP8--SLC25A46^ENST00000355943.8" ; transcript_name "SLC25A46-201" ; transcript_support_level 1 ; transcript_type protein_coding
TNFAIP8--SLC25A46 HAVANA mRNA 19004 34432 . + . FI_gene_label "SLC25A46^ENSG00000164209.17" ; ID "TNFAIP8--SLC25A46^ENST00000355943.8" ; Parent "TNFAIP8--SLC25A46^SLC25A46^ENSG00000164209.17" ; ccdsid "CCDS4100.1" ; exon_id "ENSE00001949622.3" ; exon_number 1 ; gene_id "TNFAIP8--SLC25A46^SLC25A46^ENSG00000164209.17" ; gene_name SLC25A46 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128794.8" ; havana_transcript "OTTHUMT00000250721.6" ; hgnc_id "HGNC:25198" ; level 2 ; orig_coord_info "chr5,110739120,110739402,+" ; protein_id "ENSP00000348211.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TNFAIP8--SLC25A46^ENST00000355943.8" ; transcript_name "SLC25A46-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRPC4AP--BPIFC HAVANA gene 1001 20734 . + . FI_gene_label "TRPC4AP^ENSG00000100991.12" ; ID "TRPC4AP--BPIFC^TRPC4AP^ENSG00000100991.12" ; ccdsid "CCDS13246.1" ; exon_id "ENSE00002254384.1" ; exon_number 1 ; gene_id "TRPC4AP--BPIFC^TRPC4AP^ENSG00000100991.12" ; gene_name TRPC4AP ; gene_type protein_coding ; havana_gene "OTTHUMG00000032319.3" ; havana_transcript "OTTHUMT00000078832.2" ; hgnc_id "HGNC:16181" ; level 2 ; orig_coord_info "chr20,35092614,35092781,-" ; protein_id "ENSP00000252015.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "TRPC4AP--BPIFC^ENST00000252015.3" ; transcript_name "TRPC4AP-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRPC4AP--BPIFC HAVANA mRNA 1001 20734 . + . FI_gene_label "TRPC4AP^ENSG00000100991.12" ; ID "TRPC4AP--BPIFC^ENST00000252015.3" ; Parent "TRPC4AP--BPIFC^TRPC4AP^ENSG00000100991.12" ; ccdsid "CCDS13246.1" ; exon_id "ENSE00002254384.1" ; exon_number 1 ; gene_id "TRPC4AP--BPIFC^TRPC4AP^ENSG00000100991.12" ; gene_name TRPC4AP ; gene_type protein_coding ; havana_gene "OTTHUMG00000032319.3" ; havana_transcript "OTTHUMT00000078832.2" ; hgnc_id "HGNC:16181" ; level 2 ; orig_coord_info "chr20,35092614,35092781,-" ; protein_id "ENSP00000252015.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "TRPC4AP--BPIFC^ENST00000252015.3" ; transcript_name "TRPC4AP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRPC4AP--BPIFC ENSEMBL gene 25934 41062 . + . FI_gene_label "BPIFC^ENSG00000184459.8" ; ID "TRPC4AP--BPIFC^BPIFC^ENSG00000184459.8" ; ccdsid "CCDS13906.1" ; exon_id "ENSE00003757955.1" ; exon_number 1 ; gene_id "TRPC4AP--BPIFC^BPIFC^ENSG00000184459.8" ; gene_name BPIFC ; gene_type protein_coding ; havana_gene "OTTHUMG00000058273.2" ; hgnc_id "HGNC:16503" ; level 3 ; orig_coord_info "chr22,32457263,32457386,-" ; protein_id "ENSP00000300399.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TRPC4AP--BPIFC^ENST00000300399.7" ; transcript_name "BPIFC-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRPC4AP--BPIFC ENSEMBL mRNA 25934 41062 . + . FI_gene_label "BPIFC^ENSG00000184459.8" ; ID "TRPC4AP--BPIFC^ENST00000300399.7" ; Parent "TRPC4AP--BPIFC^BPIFC^ENSG00000184459.8" ; ccdsid "CCDS13906.1" ; exon_id "ENSE00003757955.1" ; exon_number 1 ; gene_id "TRPC4AP--BPIFC^BPIFC^ENSG00000184459.8" ; gene_name BPIFC ; gene_type protein_coding ; havana_gene "OTTHUMG00000058273.2" ; hgnc_id "HGNC:16503" ; level 3 ; orig_coord_info "chr22,32457263,32457386,-" ; protein_id "ENSP00000300399.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TRPC4AP--BPIFC^ENST00000300399.7" ; transcript_name "BPIFC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TSBP1--NOTCH4 HAVANA gene 1006 24941 . + . FI_gene_label "TSBP1^ENSG00000204296.12" ; ID "TSBP1--NOTCH4^TSBP1^ENSG00000204296.12" ; exon_id "ENSE00001877826.1" ; exon_number 1 ; gene_id "TSBP1--NOTCH4^TSBP1^ENSG00000204296.12" ; gene_name TSBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031107.5" ; havana_transcript "OTTHUMT00000076177.2" ; hgnc_id "HGNC:13922" ; level 2 ; orig_coord_info "chr6,32371694,32371706,-" ; protein_id "ENSP00000364155.4" ; tag basic appris_alternative_2 ; transcript_id "TSBP1--NOTCH4^ENST00000375015.8" ; transcript_name "TSBP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
TSBP1--NOTCH4 HAVANA mRNA 1006 24941 . + . FI_gene_label "TSBP1^ENSG00000204296.12" ; ID "TSBP1--NOTCH4^ENST00000375015.8" ; Parent "TSBP1--NOTCH4^TSBP1^ENSG00000204296.12" ; exon_id "ENSE00001877826.1" ; exon_number 1 ; gene_id "TSBP1--NOTCH4^TSBP1^ENSG00000204296.12" ; gene_name TSBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031107.5" ; havana_transcript "OTTHUMT00000076177.2" ; hgnc_id "HGNC:13922" ; level 2 ; orig_coord_info "chr6,32371694,32371706,-" ; protein_id "ENSP00000364155.4" ; tag basic appris_alternative_2 ; transcript_id "TSBP1--NOTCH4^ENST00000375015.8" ; transcript_name "TSBP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TSBP1--NOTCH4 HAVANA gene 29086 51058 . + . FI_gene_label "NOTCH4^ENSG00000204301.6" ; ID "TSBP1--NOTCH4^NOTCH4^ENSG00000204301.6" ; ccdsid "CCDS34420.1" ; exon_id "ENSE00001658736.1" ; exon_number 1 ; gene_id "TSBP1--NOTCH4^NOTCH4^ENSG00000204301.6" ; gene_name NOTCH4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031044.2" ; havana_transcript "OTTHUMT00000076045.2" ; hgnc_id "HGNC:7884" ; level 2 ; orig_coord_info "chr6,32223856,32223928,-" ; protein_id "ENSP00000364163.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TSBP1--NOTCH4^ENST00000375023.3" ; transcript_name "NOTCH4-201" ; transcript_support_level 1 ; transcript_type protein_coding
TSBP1--NOTCH4 HAVANA mRNA 29086 51058 . + . FI_gene_label "NOTCH4^ENSG00000204301.6" ; ID "TSBP1--NOTCH4^ENST00000375023.3" ; Parent "TSBP1--NOTCH4^NOTCH4^ENSG00000204301.6" ; ccdsid "CCDS34420.1" ; exon_id "ENSE00001658736.1" ; exon_number 1 ; gene_id "TSBP1--NOTCH4^NOTCH4^ENSG00000204301.6" ; gene_name NOTCH4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031044.2" ; havana_transcript "OTTHUMT00000076045.2" ; hgnc_id "HGNC:7884" ; level 2 ; orig_coord_info "chr6,32223856,32223928,-" ; protein_id "ENSP00000364163.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TSBP1--NOTCH4^ENST00000375023.3" ; transcript_name "NOTCH4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TSBP1--TSBP1-AS1 HAVANA gene 1006 24941 . + . FI_gene_label "TSBP1^ENSG00000204296.12" ; ID "TSBP1--TSBP1-AS1^TSBP1^ENSG00000204296.12" ; exon_id "ENSE00001877826.1" ; exon_number 1 ; gene_id "TSBP1--TSBP1-AS1^TSBP1^ENSG00000204296.12" ; gene_name TSBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031107.5" ; havana_transcript "OTTHUMT00000076177.2" ; hgnc_id "HGNC:13922" ; level 2 ; orig_coord_info "chr6,32371694,32371706,-" ; protein_id "ENSP00000364155.4" ; tag basic appris_alternative_2 ; transcript_id "TSBP1--TSBP1-AS1^ENST00000375015.8" ; transcript_name "TSBP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
TSBP1--TSBP1-AS1 HAVANA mRNA 1006 24941 . + . FI_gene_label "TSBP1^ENSG00000204296.12" ; ID "TSBP1--TSBP1-AS1^ENST00000375015.8" ; Parent "TSBP1--TSBP1-AS1^TSBP1^ENSG00000204296.12" ; exon_id "ENSE00001877826.1" ; exon_number 1 ; gene_id "TSBP1--TSBP1-AS1^TSBP1^ENSG00000204296.12" ; gene_name TSBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031107.5" ; havana_transcript "OTTHUMT00000076177.2" ; hgnc_id "HGNC:13922" ; level 2 ; orig_coord_info "chr6,32371694,32371706,-" ; protein_id "ENSP00000364155.4" ; tag basic appris_alternative_2 ; transcript_id "TSBP1--TSBP1-AS1^ENST00000375015.8" ; transcript_name "TSBP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UPK3B--AC211486.3 HAVANA gene 1001 5731 . + . FI_gene_label "UPK3B^ENSG00000243566.7" ; ID "UPK3B--AC211486.3^UPK3B^ENSG00000243566.7" ; exon_id "ENSE00001331331.5" ; exon_number 1 ; gene_id "UPK3B--AC211486.3^UPK3B^ENSG00000243566.7" ; gene_name UPK3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000149929.3" ; havana_transcript "OTTHUMT00000313978.2" ; hgnc_id "HGNC:21444" ; level 2 ; orig_coord_info "chr7,76510653,76511052,+" ; protein_id "ENSP00000257632.5" ; tag basic appris_alternative_2 ; transcript_id "UPK3B--AC211486.3^ENST00000257632.9" ; transcript_name "UPK3B-201" ; transcript_support_level 2 ; transcript_type protein_coding
UPK3B--AC211486.3 HAVANA mRNA 1001 5731 . + . FI_gene_label "UPK3B^ENSG00000243566.7" ; ID "UPK3B--AC211486.3^ENST00000257632.9" ; Parent "UPK3B--AC211486.3^UPK3B^ENSG00000243566.7" ; exon_id "ENSE00001331331.5" ; exon_number 1 ; gene_id "UPK3B--AC211486.3^UPK3B^ENSG00000243566.7" ; gene_name UPK3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000149929.3" ; havana_transcript "OTTHUMT00000313978.2" ; hgnc_id "HGNC:21444" ; level 2 ; orig_coord_info "chr7,76510653,76511052,+" ; protein_id "ENSP00000257632.5" ; tag basic appris_alternative_2 ; transcript_id "UPK3B--AC211486.3^ENST00000257632.9" ; transcript_name "UPK3B-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
USP9Y--AC063965.2 HAVANA gene 13795 62032 . + . FI_gene_label "USP9Y^ENSG00000114374.13" ; ID "USP9Y--AC063965.2^USP9Y^ENSG00000114374.13" ; ccdsid "CCDS14781.1" ; exon_id "ENSE00003651478.1" ; exon_number 3 ; gene_id "USP9Y--AC063965.2^USP9Y^ENSG00000114374.13" ; gene_name USP9Y ; gene_type protein_coding ; havana_gene "OTTHUMG00000036469.3" ; havana_transcript "OTTHUMT00000088703.3" ; hgnc_id "HGNC:12633" ; level 2 ; orig_coord_info "chrY,12709448,12709543,+" ; protein_id "ENSP00000342812.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP9Y--AC063965.2^ENST00000338981.7" ; transcript_name "USP9Y-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP9Y--AC063965.2 HAVANA mRNA 13795 62032 . + . FI_gene_label "USP9Y^ENSG00000114374.13" ; ID "USP9Y--AC063965.2^ENST00000338981.7" ; Parent "USP9Y--AC063965.2^USP9Y^ENSG00000114374.13" ; ccdsid "CCDS14781.1" ; exon_id "ENSE00003651478.1" ; exon_number 3 ; gene_id "USP9Y--AC063965.2^USP9Y^ENSG00000114374.13" ; gene_name USP9Y ; gene_type protein_coding ; havana_gene "OTTHUMG00000036469.3" ; havana_transcript "OTTHUMT00000088703.3" ; hgnc_id "HGNC:12633" ; level 2 ; orig_coord_info "chrY,12709448,12709543,+" ; protein_id "ENSP00000342812.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP9Y--AC063965.2^ENST00000338981.7" ; transcript_name "USP9Y-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP9Y--PTEN HAVANA gene 13795 62032 . + . FI_gene_label "USP9Y^ENSG00000114374.13" ; ID "USP9Y--PTEN^USP9Y^ENSG00000114374.13" ; ccdsid "CCDS14781.1" ; exon_id "ENSE00003651478.1" ; exon_number 3 ; gene_id "USP9Y--PTEN^USP9Y^ENSG00000114374.13" ; gene_name USP9Y ; gene_type protein_coding ; havana_gene "OTTHUMG00000036469.3" ; havana_transcript "OTTHUMT00000088703.3" ; hgnc_id "HGNC:12633" ; level 2 ; orig_coord_info "chrY,12709448,12709543,+" ; protein_id "ENSP00000342812.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP9Y--PTEN^ENST00000338981.7" ; transcript_name "USP9Y-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP9Y--PTEN HAVANA mRNA 13795 62032 . + . FI_gene_label "USP9Y^ENSG00000114374.13" ; ID "USP9Y--PTEN^ENST00000338981.7" ; Parent "USP9Y--PTEN^USP9Y^ENSG00000114374.13" ; ccdsid "CCDS14781.1" ; exon_id "ENSE00003651478.1" ; exon_number 3 ; gene_id "USP9Y--PTEN^USP9Y^ENSG00000114374.13" ; gene_name USP9Y ; gene_type protein_coding ; havana_gene "OTTHUMG00000036469.3" ; havana_transcript "OTTHUMT00000088703.3" ; hgnc_id "HGNC:12633" ; level 2 ; orig_coord_info "chrY,12709448,12709543,+" ; protein_id "ENSP00000342812.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP9Y--PTEN^ENST00000338981.7" ; transcript_name "USP9Y-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP9Y--PTEN HAVANA gene 65033 84692 . + . FI_gene_label "PTEN^ENSG00000171862.11" ; ID "USP9Y--PTEN^PTEN^ENSG00000171862.11" ; ccdsid "CCDS31238.1" ; exon_id "ENSE00001456562.4" ; exon_number 1 ; gene_id "USP9Y--PTEN^PTEN^ENSG00000171862.11" ; gene_name PTEN ; gene_type protein_coding ; havana_gene "OTTHUMG00000018688.3" ; havana_transcript "OTTHUMT00000049241.2" ; hgnc_id "HGNC:9588" ; level 2 ; orig_coord_info "chr10,87864470,87864548,+" ; protein_id "ENSP00000361021.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP9Y--PTEN^ENST00000371953.8" ; transcript_name "PTEN-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP9Y--PTEN HAVANA mRNA 65033 84692 . + . FI_gene_label "PTEN^ENSG00000171862.11" ; ID "USP9Y--PTEN^ENST00000371953.8" ; Parent "USP9Y--PTEN^PTEN^ENSG00000171862.11" ; ccdsid "CCDS31238.1" ; exon_id "ENSE00001456562.4" ; exon_number 1 ; gene_id "USP9Y--PTEN^PTEN^ENSG00000171862.11" ; gene_name PTEN ; gene_type protein_coding ; havana_gene "OTTHUMG00000018688.3" ; havana_transcript "OTTHUMT00000049241.2" ; hgnc_id "HGNC:9588" ; level 2 ; orig_coord_info "chr10,87864470,87864548,+" ; protein_id "ENSP00000361021.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP9Y--PTEN^ENST00000371953.8" ; transcript_name "PTEN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP9Y--XPNPEP1 ENSEMBL gene 65033 89289 . + . FI_gene_label "XPNPEP1^ENSG00000108039.18" ; ID "USP9Y--XPNPEP1^XPNPEP1^ENSG00000108039.18" ; ccdsid "CCDS53576.1" ; exon_id "ENSE00003520587.1" ; exon_number 1 ; gene_id "USP9Y--XPNPEP1^XPNPEP1^ENSG00000108039.18" ; gene_name XPNPEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019029.5" ; hgnc_id "HGNC:12822" ; level 3 ; orig_coord_info "chr10,109923402,109923433,-" ; protein_id "ENSP00000324011.8" ; tag basic CCDS ; transcript_id "USP9Y--XPNPEP1^ENST00000322238.12" ; transcript_name "XPNPEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP9Y--XPNPEP1 ENSEMBL mRNA 65033 89289 . + . FI_gene_label "XPNPEP1^ENSG00000108039.18" ; ID "USP9Y--XPNPEP1^ENST00000322238.12" ; Parent "USP9Y--XPNPEP1^XPNPEP1^ENSG00000108039.18" ; ccdsid "CCDS53576.1" ; exon_id "ENSE00003520587.1" ; exon_number 1 ; gene_id "USP9Y--XPNPEP1^XPNPEP1^ENSG00000108039.18" ; gene_name XPNPEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019029.5" ; hgnc_id "HGNC:12822" ; level 3 ; orig_coord_info "chr10,109923402,109923433,-" ; protein_id "ENSP00000324011.8" ; tag basic CCDS ; transcript_id "USP9Y--XPNPEP1^ENST00000322238.12" ; transcript_name "XPNPEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP9Y--XPNPEP1 HAVANA gene 13795 62032 . + . FI_gene_label "USP9Y^ENSG00000114374.13" ; ID "USP9Y--XPNPEP1^USP9Y^ENSG00000114374.13" ; ccdsid "CCDS14781.1" ; exon_id "ENSE00003651478.1" ; exon_number 3 ; gene_id "USP9Y--XPNPEP1^USP9Y^ENSG00000114374.13" ; gene_name USP9Y ; gene_type protein_coding ; havana_gene "OTTHUMG00000036469.3" ; havana_transcript "OTTHUMT00000088703.3" ; hgnc_id "HGNC:12633" ; level 2 ; orig_coord_info "chrY,12709448,12709543,+" ; protein_id "ENSP00000342812.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP9Y--XPNPEP1^ENST00000338981.7" ; transcript_name "USP9Y-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP9Y--XPNPEP1 HAVANA mRNA 13795 62032 . + . FI_gene_label "USP9Y^ENSG00000114374.13" ; ID "USP9Y--XPNPEP1^ENST00000338981.7" ; Parent "USP9Y--XPNPEP1^USP9Y^ENSG00000114374.13" ; ccdsid "CCDS14781.1" ; exon_id "ENSE00003651478.1" ; exon_number 3 ; gene_id "USP9Y--XPNPEP1^USP9Y^ENSG00000114374.13" ; gene_name USP9Y ; gene_type protein_coding ; havana_gene "OTTHUMG00000036469.3" ; havana_transcript "OTTHUMT00000088703.3" ; hgnc_id "HGNC:12633" ; level 2 ; orig_coord_info "chrY,12709448,12709543,+" ; protein_id "ENSP00000342812.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP9Y--XPNPEP1^ENST00000338981.7" ; transcript_name "USP9Y-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UTY--AC099753.1 HAVANA gene 1004 24066 . + . FI_gene_label "UTY^ENSG00000183878.15" ; ID "UTY--AC099753.1^UTY^ENSG00000183878.15" ; ccdsid "CCDS14785.1" ; exon_id "ENSE00001385925.1" ; exon_number 1 ; gene_id "UTY--AC099753.1^UTY^ENSG00000183878.15" ; gene_name UTY ; gene_type protein_coding ; havana_gene "OTTHUMG00000036319.3" ; havana_transcript "OTTHUMT00000088396.1" ; hgnc_id "HGNC:12638" ; level 2 ; orig_coord_info "chrY,13479514,13479665,-" ; protein_id "ENSP00000330446.5" ; tag basic CCDS ; transcript_id "UTY--AC099753.1^ENST00000329134.9" ; transcript_name "UTY-201" ; transcript_support_level 1 ; transcript_type protein_coding
UTY--AC099753.1 HAVANA mRNA 1004 24066 . + . FI_gene_label "UTY^ENSG00000183878.15" ; ID "UTY--AC099753.1^ENST00000329134.9" ; Parent "UTY--AC099753.1^UTY^ENSG00000183878.15" ; ccdsid "CCDS14785.1" ; exon_id "ENSE00001385925.1" ; exon_number 1 ; gene_id "UTY--AC099753.1^UTY^ENSG00000183878.15" ; gene_name UTY ; gene_type protein_coding ; havana_gene "OTTHUMG00000036319.3" ; havana_transcript "OTTHUMT00000088396.1" ; hgnc_id "HGNC:12638" ; level 2 ; orig_coord_info "chrY,13479514,13479665,-" ; protein_id "ENSP00000330446.5" ; tag basic CCDS ; transcript_id "UTY--AC099753.1^ENST00000329134.9" ; transcript_name "UTY-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UTY--VENTXP7 HAVANA gene 1004 24066 . + . FI_gene_label "UTY^ENSG00000183878.15" ; ID "UTY--VENTXP7^UTY^ENSG00000183878.15" ; ccdsid "CCDS14785.1" ; exon_id "ENSE00001385925.1" ; exon_number 1 ; gene_id "UTY--VENTXP7^UTY^ENSG00000183878.15" ; gene_name UTY ; gene_type protein_coding ; havana_gene "OTTHUMG00000036319.3" ; havana_transcript "OTTHUMT00000088396.1" ; hgnc_id "HGNC:12638" ; level 2 ; orig_coord_info "chrY,13479514,13479665,-" ; protein_id "ENSP00000330446.5" ; tag basic CCDS ; transcript_id "UTY--VENTXP7^ENST00000329134.9" ; transcript_name "UTY-201" ; transcript_support_level 1 ; transcript_type protein_coding
UTY--VENTXP7 HAVANA mRNA 1004 24066 . + . FI_gene_label "UTY^ENSG00000183878.15" ; ID "UTY--VENTXP7^ENST00000329134.9" ; Parent "UTY--VENTXP7^UTY^ENSG00000183878.15" ; ccdsid "CCDS14785.1" ; exon_id "ENSE00001385925.1" ; exon_number 1 ; gene_id "UTY--VENTXP7^UTY^ENSG00000183878.15" ; gene_name UTY ; gene_type protein_coding ; havana_gene "OTTHUMG00000036319.3" ; havana_transcript "OTTHUMT00000088396.1" ; hgnc_id "HGNC:12638" ; level 2 ; orig_coord_info "chrY,13479514,13479665,-" ; protein_id "ENSP00000330446.5" ; tag basic CCDS ; transcript_id "UTY--VENTXP7^ENST00000329134.9" ; transcript_name "UTY-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VWA2--TDRD1 ENSEMBL gene 22088 46446 . + . FI_gene_label "TDRD1^ENSG00000095627.9" ; ID "VWA2--TDRD1^TDRD1^ENSG00000095627.9" ; ccdsid "CCDS7588.1" ; exon_id "ENSE00003519815.1" ; exon_number 2 ; gene_id "VWA2--TDRD1^TDRD1^ENSG00000095627.9" ; gene_name TDRD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019083.2" ; hgnc_id "HGNC:11712" ; level 3 ; orig_coord_info "chr10,114187832,114188156,+" ; protein_id "ENSP00000251864.2" ; tag basic appris_principal_2 CCDS ; transcript_id "VWA2--TDRD1^ENST00000251864.6" ; transcript_name "TDRD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
VWA2--TDRD1 ENSEMBL mRNA 22088 46446 . + . FI_gene_label "TDRD1^ENSG00000095627.9" ; ID "VWA2--TDRD1^ENST00000251864.6" ; Parent "VWA2--TDRD1^TDRD1^ENSG00000095627.9" ; ccdsid "CCDS7588.1" ; exon_id "ENSE00003519815.1" ; exon_number 2 ; gene_id "VWA2--TDRD1^TDRD1^ENSG00000095627.9" ; gene_name TDRD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019083.2" ; hgnc_id "HGNC:11712" ; level 3 ; orig_coord_info "chr10,114187832,114188156,+" ; protein_id "ENSP00000251864.2" ; tag basic appris_principal_2 CCDS ; transcript_id "VWA2--TDRD1^ENST00000251864.6" ; transcript_name "TDRD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VWA2--TDRD1 HAVANA gene 1001 19087 . + . FI_gene_label "VWA2^ENSG00000165816.13" ; ID "VWA2--TDRD1^VWA2^ENSG00000165816.13" ; ccdsid "CCDS7589.2" ; exon_id "ENSE00003663321.1" ; exon_number 2 ; gene_id "VWA2--TDRD1^VWA2^ENSG00000165816.13" ; gene_name VWA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019082.4" ; havana_transcript "OTTHUMT00000050456.4" ; hgnc_id "HGNC:24709" ; level 2 ; orig_coord_info "chr10,114248714,114248765,+" ; protein_id "ENSP00000376708.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VWA2--TDRD1^ENST00000392982.8" ; transcript_name "VWA2-202" ; transcript_support_level 1 ; transcript_type protein_coding
VWA2--TDRD1 HAVANA mRNA 1001 19087 . + . FI_gene_label "VWA2^ENSG00000165816.13" ; ID "VWA2--TDRD1^ENST00000392982.8" ; Parent "VWA2--TDRD1^VWA2^ENSG00000165816.13" ; ccdsid "CCDS7589.2" ; exon_id "ENSE00003663321.1" ; exon_number 2 ; gene_id "VWA2--TDRD1^VWA2^ENSG00000165816.13" ; gene_name VWA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019082.4" ; havana_transcript "OTTHUMT00000050456.4" ; hgnc_id "HGNC:24709" ; level 2 ; orig_coord_info "chr10,114248714,114248765,+" ; protein_id "ENSP00000376708.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VWA2--TDRD1^ENST00000392982.8" ; transcript_name "VWA2-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
XPNPEP1--CTNNA3 ENSEMBL gene 1001 25257 . + . FI_gene_label "XPNPEP1^ENSG00000108039.18" ; ID "XPNPEP1--CTNNA3^XPNPEP1^ENSG00000108039.18" ; ccdsid "CCDS53576.1" ; exon_id "ENSE00003520587.1" ; exon_number 1 ; gene_id "XPNPEP1--CTNNA3^XPNPEP1^ENSG00000108039.18" ; gene_name XPNPEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019029.5" ; hgnc_id "HGNC:12822" ; level 3 ; orig_coord_info "chr10,109923402,109923433,-" ; protein_id "ENSP00000324011.8" ; tag basic CCDS ; transcript_id "XPNPEP1--CTNNA3^ENST00000322238.12" ; transcript_name "XPNPEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
XPNPEP1--CTNNA3 ENSEMBL mRNA 1001 25257 . + . FI_gene_label "XPNPEP1^ENSG00000108039.18" ; ID "XPNPEP1--CTNNA3^ENST00000322238.12" ; Parent "XPNPEP1--CTNNA3^XPNPEP1^ENSG00000108039.18" ; ccdsid "CCDS53576.1" ; exon_id "ENSE00003520587.1" ; exon_number 1 ; gene_id "XPNPEP1--CTNNA3^XPNPEP1^ENSG00000108039.18" ; gene_name XPNPEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019029.5" ; hgnc_id "HGNC:12822" ; level 3 ; orig_coord_info "chr10,109923402,109923433,-" ; protein_id "ENSP00000324011.8" ; tag basic CCDS ; transcript_id "XPNPEP1--CTNNA3^ENST00000322238.12" ; transcript_name "XPNPEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
XPNPEP1--CTNNA3 HAVANA gene 29454 34149 . + . FI_gene_label "CTNNA3^ENSG00000183230.17" ; ID "XPNPEP1--CTNNA3^CTNNA3^ENSG00000183230.17" ; exon_id "ENSE00002159040.1" ; exon_number 2 ; gene_id "XPNPEP1--CTNNA3^CTNNA3^ENSG00000183230.17" ; gene_name CTNNA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018334.8" ; havana_transcript "OTTHUMT00000048284.2" ; hgnc_id "HGNC:2511" ; level 2 ; orig_coord_info "chr10,67647415,67647513,-" ; protein_id "ENSP00000330570.5" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "XPNPEP1--CTNNA3^ENST00000330298.6" ; transcript_name "CTNNA3-201" ; transcript_support_level 2 ; transcript_type protein_coding
XPNPEP1--CTNNA3 HAVANA mRNA 29454 34149 . + . FI_gene_label "CTNNA3^ENSG00000183230.17" ; ID "XPNPEP1--CTNNA3^ENST00000330298.6" ; Parent "XPNPEP1--CTNNA3^CTNNA3^ENSG00000183230.17" ; exon_id "ENSE00002159040.1" ; exon_number 2 ; gene_id "XPNPEP1--CTNNA3^CTNNA3^ENSG00000183230.17" ; gene_name CTNNA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018334.8" ; havana_transcript "OTTHUMT00000048284.2" ; hgnc_id "HGNC:2511" ; level 2 ; orig_coord_info "chr10,67647415,67647513,-" ; protein_id "ENSP00000330570.5" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "XPNPEP1--CTNNA3^ENST00000330298.6" ; transcript_name "CTNNA3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZNF341--SPHK2 HAVANA gene 23216 31663 . + . FI_gene_label "SPHK2^ENSG00000063176.16" ; ID "ZNF341--SPHK2^SPHK2^ENSG00000063176.16" ; ccdsid "CCDS12727.1" ; exon_id "ENSE00003480637.1" ; exon_number 2 ; gene_id "ZNF341--SPHK2^SPHK2^ENSG00000063176.16" ; gene_name SPHK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183318.4" ; havana_transcript "OTTHUMT00000466153.2" ; hgnc_id "HGNC:18859" ; level 2 ; orig_coord_info "chr19,48620515,48620553,+" ; protein_id "ENSP00000245222.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ZNF341--SPHK2^ENST00000245222.9" ; transcript_name "SPHK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF341--SPHK2 HAVANA mRNA 23216 31663 . + . FI_gene_label "SPHK2^ENSG00000063176.16" ; ID "ZNF341--SPHK2^ENST00000245222.9" ; Parent "ZNF341--SPHK2^SPHK2^ENSG00000063176.16" ; ccdsid "CCDS12727.1" ; exon_id "ENSE00003480637.1" ; exon_number 2 ; gene_id "ZNF341--SPHK2^SPHK2^ENSG00000063176.16" ; gene_name SPHK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183318.4" ; havana_transcript "OTTHUMT00000466153.2" ; hgnc_id "HGNC:18859" ; level 2 ; orig_coord_info "chr19,48620515,48620553,+" ; protein_id "ENSP00000245222.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ZNF341--SPHK2^ENST00000245222.9" ; transcript_name "SPHK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF341--SPHK2 HAVANA gene 1001 20000 . + . FI_gene_label "ZNF341^ENSG00000131061.14" ; ID "ZNF341--SPHK2^ZNF341^ENSG00000131061.14" ; ccdsid "CCDS13227.1" ; exon_id "ENSE00001660419.1" ; exon_number 1 ; gene_id "ZNF341--SPHK2^ZNF341^ENSG00000131061.14" ; gene_name ZNF341 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032275.5" ; havana_transcript "OTTHUMT00000078741.2" ; hgnc_id "HGNC:15992" ; level 2 ; orig_coord_info "chr20,33732022,33732052,+" ; protein_id "ENSP00000344308.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF341--SPHK2^ENST00000342427.6" ; transcript_name "ZNF341-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF341--SPHK2 HAVANA mRNA 1001 20000 . + . FI_gene_label "ZNF341^ENSG00000131061.14" ; ID "ZNF341--SPHK2^ENST00000342427.6" ; Parent "ZNF341--SPHK2^ZNF341^ENSG00000131061.14" ; ccdsid "CCDS13227.1" ; exon_id "ENSE00001660419.1" ; exon_number 1 ; gene_id "ZNF341--SPHK2^ZNF341^ENSG00000131061.14" ; gene_name ZNF341 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032275.5" ; havana_transcript "OTTHUMT00000078741.2" ; hgnc_id "HGNC:15992" ; level 2 ; orig_coord_info "chr20,33732022,33732052,+" ; protein_id "ENSP00000344308.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF341--SPHK2^ENST00000342427.6" ; transcript_name "ZNF341-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC006008.1--ACTR3B HAVANA gene 1001 3113 . + . FI_gene_label "AC006008.1^ENSG00000286912.1" ; ID "AC006008.1--ACTR3B^AC006008.1^ENSG00000286912.1" ; exon_id "ENSE00003876389.1" ; exon_number 1 ; gene_id "AC006008.1--ACTR3B^AC006008.1^ENSG00000286912.1" ; gene_name "AC006008.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195169.1" ; havana_transcript "OTTHUMT00000524931.1" ; level 2 ; orig_coord_info "chr7,150237556,150237608,-" ; tag basic TAGENE ; transcript_id "AC006008.1--ACTR3B^ENST00000653791.1" ; transcript_name "AC006008.1-201" ; transcript_type lncRNA
AC006008.1--ACTR3B HAVANA RNA 1001 3113 . + . FI_gene_label "AC006008.1^ENSG00000286912.1" ; ID "AC006008.1--ACTR3B^ENST00000653791.1" ; Parent "AC006008.1--ACTR3B^AC006008.1^ENSG00000286912.1" ; exon_id "ENSE00003876389.1" ; exon_number 1 ; gene_id "AC006008.1--ACTR3B^AC006008.1^ENSG00000286912.1" ; gene_name "AC006008.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195169.1" ; havana_transcript "OTTHUMT00000524931.1" ; level 2 ; orig_coord_info "chr7,150237556,150237608,-" ; tag basic TAGENE ; transcript_id "AC006008.1--ACTR3B^ENST00000653791.1" ; transcript_name "AC006008.1-201" ; transcript_type lncRNA
L1 and L2 created:
AC063965.2--USP9Y HAVANA gene 1001 2688 . + . FI_gene_label "AC063965.2^ENSG00000224745.1" ; ID "AC063965.2--USP9Y^AC063965.2^ENSG00000224745.1" ; exon_id "ENSE00001636807.1" ; exon_number 1 ; gene_id "AC063965.2--USP9Y^AC063965.2^ENSG00000224745.1" ; gene_name "AC063965.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000018686.1" ; havana_transcript "OTTHUMT00000049239.1" ; level 2 ; orig_coord_info "chr10,87878692,87879023,+" ; tag basic ; transcript_id "AC063965.2--USP9Y^ENST00000416679.1" ; transcript_name "AC063965.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
AC063965.2--USP9Y HAVANA RNA 1001 2688 . + . FI_gene_label "AC063965.2^ENSG00000224745.1" ; ID "AC063965.2--USP9Y^ENST00000416679.1" ; Parent "AC063965.2--USP9Y^AC063965.2^ENSG00000224745.1" ; exon_id "ENSE00001636807.1" ; exon_number 1 ; gene_id "AC063965.2--USP9Y^AC063965.2^ENSG00000224745.1" ; gene_name "AC063965.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000018686.1" ; havana_transcript "OTTHUMT00000049239.1" ; level 2 ; orig_coord_info "chr10,87878692,87879023,+" ; tag basic ; transcript_id "AC063965.2--USP9Y^ENST00000416679.1" ; transcript_name "AC063965.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC092666.1--ACTR3B HAVANA gene 7869 18117 . + . FI_gene_label "AC092666.1^ENSG00000241449.6" ; ID "AC092666.1--ACTR3B^AC092666.1^ENSG00000241449.6" ; exon_id "ENSE00001862759.1" ; exon_number 1 ; gene_id "AC092666.1--ACTR3B^AC092666.1^ENSG00000241449.6" ; gene_name "AC092666.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158149.33" ; havana_transcript "OTTHUMT00000350287.1" ; level 2 ; orig_coord_info "chr7,150040521,150040654,+" ; tag basic ; transcript_id "AC092666.1--ACTR3B^ENST00000492054.5" ; transcript_name "AC092666.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
AC092666.1--ACTR3B HAVANA RNA 7869 18117 . + . FI_gene_label "AC092666.1^ENSG00000241449.6" ; ID "AC092666.1--ACTR3B^ENST00000492054.5" ; Parent "AC092666.1--ACTR3B^AC092666.1^ENSG00000241449.6" ; exon_id "ENSE00001862759.1" ; exon_number 1 ; gene_id "AC092666.1--ACTR3B^AC092666.1^ENSG00000241449.6" ; gene_name "AC092666.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158149.33" ; havana_transcript "OTTHUMT00000350287.1" ; level 2 ; orig_coord_info "chr7,150040521,150040654,+" ; tag basic ; transcript_id "AC092666.1--ACTR3B^ENST00000492054.5" ; transcript_name "AC092666.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC092691.1--LSAMP HAVANA gene 1001 4993 . + . FI_gene_label "AC092691.1^ENSG00000239268.3" ; ID "AC092691.1--LSAMP^AC092691.1^ENSG00000239268.3" ; exon_id "ENSE00001851883.1" ; exon_number 1 ; gene_id "AC092691.1--LSAMP^AC092691.1^ENSG00000239268.3" ; gene_name "AC092691.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000159530.2" ; havana_transcript "OTTHUMT00000356022.1" ; level 2 ; orig_coord_info "chr3,117997182,117997592,-" ; transcript_id "AC092691.1--LSAMP^ENST00000484092.1" ; transcript_name "AC092691.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
AC092691.1--LSAMP HAVANA RNA 1001 4993 . + . FI_gene_label "AC092691.1^ENSG00000239268.3" ; ID "AC092691.1--LSAMP^ENST00000484092.1" ; Parent "AC092691.1--LSAMP^AC092691.1^ENSG00000239268.3" ; exon_id "ENSE00001851883.1" ; exon_number 1 ; gene_id "AC092691.1--LSAMP^AC092691.1^ENSG00000239268.3" ; gene_name "AC092691.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000159530.2" ; havana_transcript "OTTHUMT00000356022.1" ; level 2 ; orig_coord_info "chr3,117997182,117997592,-" ; transcript_id "AC092691.1--LSAMP^ENST00000484092.1" ; transcript_name "AC092691.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AP3B1--RNA5SP190 ENSEMBL gene 37110 37227 . + . FI_gene_label "RNA5SP190^ENSG00000202092.1" ; ID "AP3B1--RNA5SP190^RNA5SP190^ENSG00000202092.1" ; exon_id "ENSE00001439985.1" ; exon_number 1 ; gene_id "AP3B1--RNA5SP190^RNA5SP190^ENSG00000202092.1" ; gene_name RNA5SP190 ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:43090" ; level 3 ; orig_coord_info "chr5,119445716,119445833,+" ; tag basic ; transcript_id "AP3B1--RNA5SP190^ENST00000365222.1" ; transcript_name "RNA5SP190-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
AP3B1--RNA5SP190 ENSEMBL RNA 37110 37227 . + . FI_gene_label "RNA5SP190^ENSG00000202092.1" ; ID "AP3B1--RNA5SP190^ENST00000365222.1" ; Parent "AP3B1--RNA5SP190^RNA5SP190^ENSG00000202092.1" ; exon_id "ENSE00001439985.1" ; exon_number 1 ; gene_id "AP3B1--RNA5SP190^RNA5SP190^ENSG00000202092.1" ; gene_name RNA5SP190 ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:43090" ; level 3 ; orig_coord_info "chr5,119445716,119445833,+" ; tag basic ; transcript_id "AP3B1--RNA5SP190^ENST00000365222.1" ; transcript_name "RNA5SP190-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
L1 and L2 created:
BCL7A--AC068790.9 HAVANA gene 15566 18403 . + . FI_gene_label "AC068790.9^ENSG00000275389.1" ; ID "BCL7A--AC068790.9^AC068790.9^ENSG00000275389.1" ; exon_id "ENSE00003741496.1" ; exon_number 1 ; gene_id "BCL7A--AC068790.9^AC068790.9^ENSG00000275389.1" ; gene_name "AC068790.9" ; gene_type lncRNA ; havana_gene "OTTHUMG00000188243.1" ; havana_transcript "OTTHUMT00000476745.1" ; level 2 ; orig_coord_info "chr12,124085761,124088598,+" ; tag basic ; transcript_id "BCL7A--AC068790.9^ENST00000621669.1" ; transcript_name "AC068790.9-201" ; transcript_support_level NA ; transcript_type lncRNA
BCL7A--AC068790.9 HAVANA RNA 15566 18403 . + . FI_gene_label "AC068790.9^ENSG00000275389.1" ; ID "BCL7A--AC068790.9^ENST00000621669.1" ; Parent "BCL7A--AC068790.9^AC068790.9^ENSG00000275389.1" ; exon_id "ENSE00003741496.1" ; exon_number 1 ; gene_id "BCL7A--AC068790.9^AC068790.9^ENSG00000275389.1" ; gene_name "AC068790.9" ; gene_type lncRNA ; havana_gene "OTTHUMG00000188243.1" ; havana_transcript "OTTHUMT00000476745.1" ; level 2 ; orig_coord_info "chr12,124085761,124088598,+" ; tag basic ; transcript_id "BCL7A--AC068790.9^ENST00000621669.1" ; transcript_name "AC068790.9-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
DNA2--AC140113.4 HAVANA gene 25199 25420 . + . FI_gene_label "AC140113.4^ENSG00000273858.1" ; ID "DNA2--AC140113.4^AC140113.4^ENSG00000273858.1" ; exon_id "ENSE00003733454.1" ; exon_number 1 ; gene_id "DNA2--AC140113.4^AC140113.4^ENSG00000273858.1" ; gene_name "AC140113.4" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000188059.1" ; havana_transcript "OTTHUMT00000475842.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrY,11042722,11042943,-" ; tag basic ; transcript_id "DNA2--AC140113.4^ENST00000622087.1" ; transcript_name "AC140113.4-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
DNA2--AC140113.4 HAVANA RNA 25199 25420 . + . FI_gene_label "AC140113.4^ENSG00000273858.1" ; ID "DNA2--AC140113.4^ENST00000622087.1" ; Parent "DNA2--AC140113.4^AC140113.4^ENSG00000273858.1" ; exon_id "ENSE00003733454.1" ; exon_number 1 ; gene_id "DNA2--AC140113.4^AC140113.4^ENSG00000273858.1" ; gene_name "AC140113.4" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000188059.1" ; havana_transcript "OTTHUMT00000475842.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrY,11042722,11042943,-" ; tag basic ; transcript_id "DNA2--AC140113.4^ENST00000622087.1" ; transcript_name "AC140113.4-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
DNA2--RNA5-8SP6 ENSEMBL gene 25199 25350 . + . FI_gene_label "RNA5-8SP6^ENSG00000251705.1" ; ID "DNA2--RNA5-8SP6^RNA5-8SP6^ENSG00000251705.1" ; exon_id "ENSE00002088173.1" ; exon_number 1 ; gene_id "DNA2--RNA5-8SP6^RNA5-8SP6^ENSG00000251705.1" ; gene_name "RNA5-8SP6" ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:41960" ; level 3 ; orig_coord_info "chrY,10200155,10200306,+" ; tag basic ; transcript_id "DNA2--RNA5-8SP6^ENST00000515896.1" ; transcript_name "RNA5-8SP6-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
DNA2--RNA5-8SP6 ENSEMBL RNA 25199 25350 . + . FI_gene_label "RNA5-8SP6^ENSG00000251705.1" ; ID "DNA2--RNA5-8SP6^ENST00000515896.1" ; Parent "DNA2--RNA5-8SP6^RNA5-8SP6^ENSG00000251705.1" ; exon_id "ENSE00002088173.1" ; exon_number 1 ; gene_id "DNA2--RNA5-8SP6^RNA5-8SP6^ENSG00000251705.1" ; gene_name "RNA5-8SP6" ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:41960" ; level 3 ; orig_coord_info "chrY,10200155,10200306,+" ; tag basic ; transcript_id "DNA2--RNA5-8SP6^ENST00000515896.1" ; transcript_name "RNA5-8SP6-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
L1 and L2 created:
GOLGA6L10--GOLGA2P6 HAVANA gene 12782 20364 . + . FI_gene_label "GOLGA2P6^ENSG00000241621.1" ; ID "GOLGA6L10--GOLGA2P6^GOLGA2P6^ENSG00000241621.1" ; exon_id "ENSE00001603136.1" ; exon_number 1 ; gene_id "GOLGA6L10--GOLGA2P6^GOLGA2P6^ENSG00000241621.1" ; gene_name GOLGA2P6 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000017890.1" ; havana_transcript "OTTHUMT00000047421.1" ; hgnc_id "HGNC:44948" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr10,30374327,30374386,-" ; tag pseudo_consens basic ; transcript_id "GOLGA6L10--GOLGA2P6^ENST00000340929.4" ; transcript_name "GOLGA2P6-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
GOLGA6L10--GOLGA2P6 HAVANA RNA 12782 20364 . + . FI_gene_label "GOLGA2P6^ENSG00000241621.1" ; ID "GOLGA6L10--GOLGA2P6^ENST00000340929.4" ; Parent "GOLGA6L10--GOLGA2P6^GOLGA2P6^ENSG00000241621.1" ; exon_id "ENSE00001603136.1" ; exon_number 1 ; gene_id "GOLGA6L10--GOLGA2P6^GOLGA2P6^ENSG00000241621.1" ; gene_name GOLGA2P6 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000017890.1" ; havana_transcript "OTTHUMT00000047421.1" ; hgnc_id "HGNC:44948" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr10,30374327,30374386,-" ; tag pseudo_consens basic ; transcript_id "GOLGA6L10--GOLGA2P6^ENST00000340929.4" ; transcript_name "GOLGA2P6-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
RHPN2P1--IGH-@-ext HAVANA gene 1001 14757 . + . FI_gene_label "RHPN2P1^ENSG00000258628.1" ; ID "RHPN2P1--IGH-@-ext^RHPN2P1^ENSG00000258628.1" ; exon_id "ENSE00002474653.1" ; exon_number 1 ; gene_id "RHPN2P1--IGH-@-ext^RHPN2P1^ENSG00000258628.1" ; gene_name RHPN2P1 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000171659.1" ; havana_transcript "OTTHUMT00000414653.1" ; hgnc_id "HGNC:37708" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr15,20276736,20277503,-" ; tag basic ; transcript_id "RHPN2P1--IGH-@-ext^ENST00000557586.1" ; transcript_name "RHPN2P1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
RHPN2P1--IGH-@-ext HAVANA RNA 1001 14757 . + . FI_gene_label "RHPN2P1^ENSG00000258628.1" ; ID "RHPN2P1--IGH-@-ext^ENST00000557586.1" ; Parent "RHPN2P1--IGH-@-ext^RHPN2P1^ENSG00000258628.1" ; exon_id "ENSE00002474653.1" ; exon_number 1 ; gene_id "RHPN2P1--IGH-@-ext^RHPN2P1^ENSG00000258628.1" ; gene_name RHPN2P1 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000171659.1" ; havana_transcript "OTTHUMT00000414653.1" ; hgnc_id "HGNC:37708" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr15,20276736,20277503,-" ; tag basic ; transcript_id "RHPN2P1--IGH-@-ext^ENST00000557586.1" ; transcript_name "RHPN2P1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
RHPN2P1--IGH-@-ext SuperLocus-ext gene 17758 1309098 . + . FI_gene_label "IGH-@-ext^IGH-.g@-ext" ; ID "RHPN2P1--IGH-@-ext^IGH-@-ext^IGH-.g@-ext" ; gene_id "RHPN2P1--IGH-@-ext^IGH-@-ext^IGH-.g@-ext" ; gene_name "IGH-@-ext" ; orig_coord_info "chr14,105583731,106875071,+" ; transcript_id "RHPN2P1--IGH-@-ext^IGH-.t@-ext"
RHPN2P1--IGH-@-ext SuperLocus-ext RNA 17758 1309098 . + . FI_gene_label "IGH-@-ext^IGH-.g@-ext" ; ID "RHPN2P1--IGH-@-ext^IGH-.t@-ext" ; Parent "RHPN2P1--IGH-@-ext^IGH-@-ext^IGH-.g@-ext" ; gene_id "RHPN2P1--IGH-@-ext^IGH-@-ext^IGH-.g@-ext" ; gene_name "IGH-@-ext" ; orig_coord_info "chr14,105583731,106875071,+" ; transcript_id "RHPN2P1--IGH-@-ext^IGH-.t@-ext"
L1 and L2 created:
SAMHD1--AL021937.4 HAVANA gene 26746 28189 . + . FI_gene_label "AL021937.4^ENSG00000241954.1" ; ID "SAMHD1--AL021937.4^AL021937.4^ENSG00000241954.1" ; exon_id "ENSE00001751714.1" ; exon_number 1 ; gene_id "SAMHD1--AL021937.4^AL021937.4^ENSG00000241954.1" ; gene_name "AL021937.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000150006.1" ; havana_transcript "OTTHUMT00000315723.1" ; level 1 ; orig_coord_info "chr22,32383786,32384053,+" ; tag basic exp_conf ; transcript_id "SAMHD1--AL021937.4^ENST00000444848.1" ; transcript_name "AL021937.4-201" ; transcript_support_level 3 ; transcript_type lncRNA
SAMHD1--AL021937.4 HAVANA RNA 26746 28189 . + . FI_gene_label "AL021937.4^ENSG00000241954.1" ; ID "SAMHD1--AL021937.4^ENST00000444848.1" ; Parent "SAMHD1--AL021937.4^AL021937.4^ENSG00000241954.1" ; exon_id "ENSE00001751714.1" ; exon_number 1 ; gene_id "SAMHD1--AL021937.4^AL021937.4^ENSG00000241954.1" ; gene_name "AL021937.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000150006.1" ; havana_transcript "OTTHUMT00000315723.1" ; level 1 ; orig_coord_info "chr22,32383786,32384053,+" ; tag basic exp_conf ; transcript_id "SAMHD1--AL021937.4^ENST00000444848.1" ; transcript_name "AL021937.4-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
SAMHD1--RFPL3S HAVANA gene 29868 39889 . + . FI_gene_label "RFPL3S^ENSG00000205853.12" ; ID "SAMHD1--RFPL3S^RFPL3S^ENSG00000205853.12" ; exon_id "ENSE00001748544.2" ; exon_number 1 ; gene_id "SAMHD1--RFPL3S^RFPL3S^ENSG00000205853.12" ; gene_name RFPL3S ; gene_type lncRNA ; havana_gene "OTTHUMG00000030295.11" ; havana_transcript "OTTHUMT00000129016.2" ; hgnc_id "HGNC:9981" ; level 2 ; orig_coord_info "chr22,32370899,32371002,-" ; tag TAGENE ; transcript_id "SAMHD1--RFPL3S^ENST00000382084.9" ; transcript_name "RFPL3S-201" ; transcript_support_level 1 ; transcript_type lncRNA
SAMHD1--RFPL3S HAVANA RNA 29868 39889 . + . FI_gene_label "RFPL3S^ENSG00000205853.12" ; ID "SAMHD1--RFPL3S^ENST00000382084.9" ; Parent "SAMHD1--RFPL3S^RFPL3S^ENSG00000205853.12" ; exon_id "ENSE00001748544.2" ; exon_number 1 ; gene_id "SAMHD1--RFPL3S^RFPL3S^ENSG00000205853.12" ; gene_name RFPL3S ; gene_type lncRNA ; havana_gene "OTTHUMG00000030295.11" ; havana_transcript "OTTHUMT00000129016.2" ; hgnc_id "HGNC:9981" ; level 2 ; orig_coord_info "chr22,32370899,32371002,-" ; tag TAGENE ; transcript_id "SAMHD1--RFPL3S^ENST00000382084.9" ; transcript_name "RFPL3S-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
SEC24D--METTL14-DT HAVANA gene 40862 52274 . + . FI_gene_label "METTL14-DT^ENSG00000281731.3" ; ID "SEC24D--METTL14-DT^METTL14-DT^ENSG00000281731.3" ; exon_id "ENSE00003866121.1" ; exon_number 1 ; gene_id "SEC24D--METTL14-DT^METTL14-DT^ENSG00000281731.3" ; gene_name "METTL14-DT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189712.2" ; havana_transcript "OTTHUMT00000527490.1" ; hgnc_id "HGNC:53367" ; level 2 ; orig_coord_info "chr4,118684408,118685313,-" ; tag TAGENE ; transcript_id "SEC24D--METTL14-DT^ENST00000628457.2" ; transcript_name "METTL14-DT-201" ; transcript_support_level 3 ; transcript_type lncRNA
SEC24D--METTL14-DT HAVANA RNA 40862 52274 . + . FI_gene_label "METTL14-DT^ENSG00000281731.3" ; ID "SEC24D--METTL14-DT^ENST00000628457.2" ; Parent "SEC24D--METTL14-DT^METTL14-DT^ENSG00000281731.3" ; exon_id "ENSE00003866121.1" ; exon_number 1 ; gene_id "SEC24D--METTL14-DT^METTL14-DT^ENSG00000281731.3" ; gene_name "METTL14-DT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189712.2" ; havana_transcript "OTTHUMT00000527490.1" ; hgnc_id "HGNC:53367" ; level 2 ; orig_coord_info "chr4,118684408,118685313,-" ; tag TAGENE ; transcript_id "SEC24D--METTL14-DT^ENST00000628457.2" ; transcript_name "METTL14-DT-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TNFAIP8--AC008782.1 HAVANA gene 18133 18562 . + . FI_gene_label "AC008782.1^ENSG00000270779.1" ; ID "TNFAIP8--AC008782.1^AC008782.1^ENSG00000270779.1" ; exon_id "ENSE00003644113.1" ; exon_number 1 ; gene_id "TNFAIP8--AC008782.1^AC008782.1^ENSG00000270779.1" ; gene_name "AC008782.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184570.1" ; havana_transcript "OTTHUMT00000468897.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr5,110908284,110908713,+" ; tag pseudo_consens basic ; transcript_id "TNFAIP8--AC008782.1^ENST00000603386.1" ; transcript_name "AC008782.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TNFAIP8--AC008782.1 HAVANA RNA 18133 18562 . + . FI_gene_label "AC008782.1^ENSG00000270779.1" ; ID "TNFAIP8--AC008782.1^ENST00000603386.1" ; Parent "TNFAIP8--AC008782.1^AC008782.1^ENSG00000270779.1" ; exon_id "ENSE00003644113.1" ; exon_number 1 ; gene_id "TNFAIP8--AC008782.1^AC008782.1^ENSG00000270779.1" ; gene_name "AC008782.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184570.1" ; havana_transcript "OTTHUMT00000468897.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr5,110908284,110908713,+" ; tag pseudo_consens basic ; transcript_id "TNFAIP8--AC008782.1^ENST00000603386.1" ; transcript_name "AC008782.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TSBP1--TSBP1-AS1 HAVANA gene 30157 34671 . + . FI_gene_label "TSBP1-AS1^ENSG00000225914.3" ; ID "TSBP1--TSBP1-AS1^TSBP1-AS1^ENSG00000225914.3" ; exon_id "ENSE00001680220.1" ; exon_number 1 ; gene_id "TSBP1--TSBP1-AS1^TSBP1-AS1^ENSG00000225914.3" ; gene_name "TSBP1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000031217.4" ; havana_transcript "OTTHUMT00000316882.2" ; hgnc_id "HGNC:39756" ; level 1 ; orig_coord_info "chr6,32255711,32255941,+" ; tag exp_conf ; transcript_id "TSBP1--TSBP1-AS1^ENST00000425033.1" ; transcript_name "TSBP1-AS1-203" ; transcript_support_level 2 ; transcript_type lncRNA
TSBP1--TSBP1-AS1 HAVANA RNA 30157 34671 . + . FI_gene_label "TSBP1-AS1^ENSG00000225914.3" ; ID "TSBP1--TSBP1-AS1^ENST00000425033.1" ; Parent "TSBP1--TSBP1-AS1^TSBP1-AS1^ENSG00000225914.3" ; exon_id "ENSE00001680220.1" ; exon_number 1 ; gene_id "TSBP1--TSBP1-AS1^TSBP1-AS1^ENSG00000225914.3" ; gene_name "TSBP1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000031217.4" ; havana_transcript "OTTHUMT00000316882.2" ; hgnc_id "HGNC:39756" ; level 1 ; orig_coord_info "chr6,32255711,32255941,+" ; tag exp_conf ; transcript_id "TSBP1--TSBP1-AS1^ENST00000425033.1" ; transcript_name "TSBP1-AS1-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
UPK3B--AC211486.3 HAVANA gene 9798 13584 . + . FI_gene_label "AC211486.3^ENSG00000273598.1" ; ID "UPK3B--AC211486.3^AC211486.3^ENSG00000273598.1" ; exon_id "ENSE00003741007.1" ; exon_number 1 ; gene_id "UPK3B--AC211486.3^AC211486.3^ENSG00000273598.1" ; gene_name "AC211486.3" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000182949.2" ; havana_transcript "OTTHUMT00000464414.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,75327624,75327765,-" ; tag basic ; transcript_id "UPK3B--AC211486.3^ENST00000412694.3" ; transcript_name "AC211486.3-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
UPK3B--AC211486.3 HAVANA RNA 9798 13584 . + . FI_gene_label "AC211486.3^ENSG00000273598.1" ; ID "UPK3B--AC211486.3^ENST00000412694.3" ; Parent "UPK3B--AC211486.3^AC211486.3^ENSG00000273598.1" ; exon_id "ENSE00003741007.1" ; exon_number 1 ; gene_id "UPK3B--AC211486.3^AC211486.3^ENSG00000273598.1" ; gene_name "AC211486.3" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000182949.2" ; havana_transcript "OTTHUMT00000464414.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,75327624,75327765,-" ; tag basic ; transcript_id "UPK3B--AC211486.3^ENST00000412694.3" ; transcript_name "AC211486.3-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
USP9Y--AC063965.2 HAVANA gene 65033 66720 . + . FI_gene_label "AC063965.2^ENSG00000224745.1" ; ID "USP9Y--AC063965.2^AC063965.2^ENSG00000224745.1" ; exon_id "ENSE00001636807.1" ; exon_number 1 ; gene_id "USP9Y--AC063965.2^AC063965.2^ENSG00000224745.1" ; gene_name "AC063965.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000018686.1" ; havana_transcript "OTTHUMT00000049239.1" ; level 2 ; orig_coord_info "chr10,87878692,87879023,+" ; tag basic ; transcript_id "USP9Y--AC063965.2^ENST00000416679.1" ; transcript_name "AC063965.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
USP9Y--AC063965.2 HAVANA RNA 65033 66720 . + . FI_gene_label "AC063965.2^ENSG00000224745.1" ; ID "USP9Y--AC063965.2^ENST00000416679.1" ; Parent "USP9Y--AC063965.2^AC063965.2^ENSG00000224745.1" ; exon_id "ENSE00001636807.1" ; exon_number 1 ; gene_id "USP9Y--AC063965.2^AC063965.2^ENSG00000224745.1" ; gene_name "AC063965.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000018686.1" ; havana_transcript "OTTHUMT00000049239.1" ; level 2 ; orig_coord_info "chr10,87878692,87879023,+" ; tag basic ; transcript_id "USP9Y--AC063965.2^ENST00000416679.1" ; transcript_name "AC063965.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
UTY--AC099753.1 HAVANA gene 37432 41549 . + . FI_gene_label "AC099753.1^ENSG00000282987.1" ; ID "UTY--AC099753.1^AC099753.1^ENSG00000282987.1" ; exon_id "ENSE00003789767.1" ; exon_number 1 ; gene_id "UTY--AC099753.1^AC099753.1^ENSG00000282987.1" ; gene_name "AC099753.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000191596.1" ; havana_transcript "OTTHUMT00000488773.1" ; level 2 ; orig_coord_info "chr3,21226085,21226305,-" ; tag RNA_Seq_supported_only basic ; transcript_id "UTY--AC099753.1^ENST00000634947.1" ; transcript_name "AC099753.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
UTY--AC099753.1 HAVANA RNA 37432 41549 . + . FI_gene_label "AC099753.1^ENSG00000282987.1" ; ID "UTY--AC099753.1^ENST00000634947.1" ; Parent "UTY--AC099753.1^AC099753.1^ENSG00000282987.1" ; exon_id "ENSE00003789767.1" ; exon_number 1 ; gene_id "UTY--AC099753.1^AC099753.1^ENSG00000282987.1" ; gene_name "AC099753.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000191596.1" ; havana_transcript "OTTHUMT00000488773.1" ; level 2 ; orig_coord_info "chr3,21226085,21226305,-" ; tag RNA_Seq_supported_only basic ; transcript_id "UTY--AC099753.1^ENST00000634947.1" ; transcript_name "AC099753.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
UTY--VENTXP7 HAVANA gene 37432 38203 . + . FI_gene_label "VENTXP7^ENSG00000236380.5" ; ID "UTY--VENTXP7^VENTXP7^ENSG00000236380.5" ; exon_id "ENSE00001860941.1" ; exon_number 1 ; gene_id "UTY--VENTXP7^VENTXP7^ENSG00000236380.5" ; gene_name VENTXP7 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000155442.2" ; havana_transcript "OTTHUMT00000340129.2" ; hgnc_id "HGNC:13638" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr3,21405737,21406508,+" ; tag pseudo_consens basic ; transcript_id "UTY--VENTXP7^ENST00000475503.1" ; transcript_name "VENTXP7-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
UTY--VENTXP7 HAVANA RNA 37432 38203 . + . FI_gene_label "VENTXP7^ENSG00000236380.5" ; ID "UTY--VENTXP7^ENST00000475503.1" ; Parent "UTY--VENTXP7^VENTXP7^ENSG00000236380.5" ; exon_id "ENSE00001860941.1" ; exon_number 1 ; gene_id "UTY--VENTXP7^VENTXP7^ENSG00000236380.5" ; gene_name VENTXP7 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000155442.2" ; havana_transcript "OTTHUMT00000340129.2" ; hgnc_id "HGNC:13638" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr3,21405737,21406508,+" ; tag pseudo_consens basic ; transcript_id "UTY--VENTXP7^ENST00000475503.1" ; transcript_name "VENTXP7-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
1302 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 1 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
3361 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 95 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 1 seconds -------------------------------
------ End checks (done in 2 second) ------
GFF3 file parsed