Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bNS-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bNS-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bNS-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 08:24:53.650 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 08:24:53 GMT 2026] MarkDuplicates --INPUT 659_bNS-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bNS-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bNS-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 08:24:53 GMT 2026] Executing as ?@nf-f9b2b41b68398ceec482172096b4b95d-918b5-p28dz on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 08:24:53 MarkDuplicates Start of doWork freeMemory: 105492112; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 08:24:53 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 08:24:53 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 08:24:57 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,390,327 INFO 2026-06-08 08:24:57 MarkDuplicates Tracking 3451 as yet unmatched pairs. 447 records in RAM. INFO 2026-06-08 08:25:00 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:3,525,023 INFO 2026-06-08 08:25:00 MarkDuplicates Tracking 6301 as yet unmatched pairs. 383 records in RAM. INFO 2026-06-08 08:25:02 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:8,360,703 INFO 2026-06-08 08:25:02 MarkDuplicates Tracking 8858 as yet unmatched pairs. 287 records in RAM. INFO 2026-06-08 08:25:04 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:11,095,766 INFO 2026-06-08 08:25:04 MarkDuplicates Tracking 11344 as yet unmatched pairs. 168 records in RAM. INFO 2026-06-08 08:25:06 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:15,931,899 INFO 2026-06-08 08:25:06 MarkDuplicates Tracking 14002 as yet unmatched pairs. 190 records in RAM. INFO 2026-06-08 08:25:08 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:19,145,915 INFO 2026-06-08 08:25:08 MarkDuplicates Tracking 16446 as yet unmatched pairs. 210 records in RAM. INFO 2026-06-08 08:25:10 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:21,721,146 INFO 2026-06-08 08:25:10 MarkDuplicates Tracking 18918 as yet unmatched pairs. 195 records in RAM. INFO 2026-06-08 08:25:12 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:21,880,699 INFO 2026-06-08 08:25:12 MarkDuplicates Tracking 22408 as yet unmatched pairs. 878 records in RAM. INFO 2026-06-08 08:25:14 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:22,661,279 INFO 2026-06-08 08:25:14 MarkDuplicates Tracking 25510 as yet unmatched pairs. 1276 records in RAM. INFO 2026-06-08 08:25:16 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:25,498,343 INFO 2026-06-08 08:25:16 MarkDuplicates Tracking 26856 as yet unmatched pairs. 239 records in RAM. INFO 2026-06-08 08:25:18 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:27,358,601 INFO 2026-06-08 08:25:18 MarkDuplicates Tracking 29698 as yet unmatched pairs. 519 records in RAM. INFO 2026-06-08 08:25:20 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:30,738,973 INFO 2026-06-08 08:25:20 MarkDuplicates Tracking 33547 as yet unmatched pairs. 1794 records in RAM. INFO 2026-06-08 08:25:22 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:32,335,017 INFO 2026-06-08 08:25:22 MarkDuplicates Tracking 34678 as yet unmatched pairs. 223 records in RAM. INFO 2026-06-08 08:25:25 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:35,370,393 INFO 2026-06-08 08:25:25 MarkDuplicates Tracking 37498 as yet unmatched pairs. 377 records in RAM. INFO 2026-06-08 08:25:26 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:38,855,762 INFO 2026-06-08 08:25:26 MarkDuplicates Tracking 40033 as yet unmatched pairs. 322 records in RAM. INFO 2026-06-08 08:25:28 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:39,454,907 INFO 2026-06-08 08:25:28 MarkDuplicates Tracking 43050 as yet unmatched pairs. 1056 records in RAM. INFO 2026-06-08 08:25:30 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:42,696,258 INFO 2026-06-08 08:25:30 MarkDuplicates Tracking 45562 as yet unmatched pairs. 1047 records in RAM. INFO 2026-06-08 08:25:32 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:44,775,591 INFO 2026-06-08 08:25:32 MarkDuplicates Tracking 48151 as yet unmatched pairs. 920 records in RAM. INFO 2026-06-08 08:25:34 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:47,217,804 INFO 2026-06-08 08:25:34 MarkDuplicates Tracking 49897 as yet unmatched pairs. 205 records in RAM. INFO 2026-06-08 08:25:35 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:54,695,421 INFO 2026-06-08 08:25:35 MarkDuplicates Tracking 52291 as yet unmatched pairs. 97 records in RAM. INFO 2026-06-08 08:25:38 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:64,867,189 INFO 2026-06-08 08:25:38 MarkDuplicates Tracking 55517 as yet unmatched pairs. 695 records in RAM. INFO 2026-06-08 08:25:39 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:84,144,471 INFO 2026-06-08 08:25:39 MarkDuplicates Tracking 57392 as yet unmatched pairs. 275 records in RAM. INFO 2026-06-08 08:25:41 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:92,834,807 INFO 2026-06-08 08:25:41 MarkDuplicates Tracking 60795 as yet unmatched pairs. 1150 records in RAM. INFO 2026-06-08 08:25:43 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:102,913,644 INFO 2026-06-08 08:25:43 MarkDuplicates Tracking 62335 as yet unmatched pairs. 496 records in RAM. INFO 2026-06-08 08:25:45 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:110,377,065 INFO 2026-06-08 08:25:45 MarkDuplicates Tracking 64584 as yet unmatched pairs. 358 records in RAM. INFO 2026-06-08 08:25:47 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:113,834,917 INFO 2026-06-08 08:25:47 MarkDuplicates Tracking 66775 as yet unmatched pairs. 196 records in RAM. INFO 2026-06-08 08:25:49 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:116,616,100 INFO 2026-06-08 08:25:49 MarkDuplicates Tracking 69066 as yet unmatched pairs. 108 records in RAM. INFO 2026-06-08 08:25:51 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:120,005,447 INFO 2026-06-08 08:25:51 MarkDuplicates Tracking 73288 as yet unmatched pairs. 1851 records in RAM. INFO 2026-06-08 08:25:53 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:145,994,620 INFO 2026-06-08 08:25:53 MarkDuplicates Tracking 74509 as yet unmatched pairs. 1516 records in RAM. INFO 2026-06-08 08:25:54 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:148,146,568 INFO 2026-06-08 08:25:54 MarkDuplicates Tracking 74676 as yet unmatched pairs. 148 records in RAM. INFO 2026-06-08 08:25:56 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,077 INFO 2026-06-08 08:25:56 MarkDuplicates Tracking 75946 as yet unmatched pairs. 174 records in RAM. INFO 2026-06-08 08:25:58 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:150,578,482 INFO 2026-06-08 08:25:58 MarkDuplicates Tracking 80019 as yet unmatched pairs. 1987 records in RAM. INFO 2026-06-08 08:26:00 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:151,302,261 INFO 2026-06-08 08:26:00 MarkDuplicates Tracking 80963 as yet unmatched pairs. 512 records in RAM. INFO 2026-06-08 08:26:02 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:153,360,744 INFO 2026-06-08 08:26:02 MarkDuplicates Tracking 85969 as yet unmatched pairs. 3127 records in RAM. INFO 2026-06-08 08:26:04 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,606 INFO 2026-06-08 08:26:04 MarkDuplicates Tracking 90271 as yet unmatched pairs. 4778 records in RAM. INFO 2026-06-08 08:26:06 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:154,553,043 INFO 2026-06-08 08:26:06 MarkDuplicates Tracking 88161 as yet unmatched pairs. 382 records in RAM. INFO 2026-06-08 08:26:08 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:155,133,523 INFO 2026-06-08 08:26:08 MarkDuplicates Tracking 91173 as yet unmatched pairs. 908 records in RAM. INFO 2026-06-08 08:26:09 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:155,188,590 INFO 2026-06-08 08:26:09 MarkDuplicates Tracking 93219 as yet unmatched pairs. 664 records in RAM. INFO 2026-06-08 08:26:11 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:155,192,144 INFO 2026-06-08 08:26:11 MarkDuplicates Tracking 103356 as yet unmatched pairs. 9389 records in RAM. INFO 2026-06-08 08:26:12 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:155,676,714 INFO 2026-06-08 08:26:12 MarkDuplicates Tracking 97479 as yet unmatched pairs. 1243 records in RAM. INFO 2026-06-08 08:26:14 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:156,135,255 INFO 2026-06-08 08:26:14 MarkDuplicates Tracking 101911 as yet unmatched pairs. 3043 records in RAM. INFO 2026-06-08 08:26:16 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,700,641 INFO 2026-06-08 08:26:16 MarkDuplicates Tracking 101987 as yet unmatched pairs. 397 records in RAM. INFO 2026-06-08 08:26:18 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:160,243,994 INFO 2026-06-08 08:26:18 MarkDuplicates Tracking 104158 as yet unmatched pairs. 233 records in RAM. INFO 2026-06-08 08:26:20 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 2s. Last read position: chr1:161,323,649 INFO 2026-06-08 08:26:20 MarkDuplicates Tracking 107174 as yet unmatched pairs. 761 records in RAM. INFO 2026-06-08 08:26:22 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:166,850,252 INFO 2026-06-08 08:26:22 MarkDuplicates Tracking 108996 as yet unmatched pairs. 382 records in RAM. INFO 2026-06-08 08:26:24 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:171,517,712 INFO 2026-06-08 08:26:24 MarkDuplicates Tracking 111860 as yet unmatched pairs. 740 records in RAM. INFO 2026-06-08 08:26:26 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:179,064,007 INFO 2026-06-08 08:26:26 MarkDuplicates Tracking 113580 as yet unmatched pairs. 237 records in RAM. INFO 2026-06-08 08:26:27 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:182,384,709 INFO 2026-06-08 08:26:27 MarkDuplicates Tracking 120394 as yet unmatched pairs. 4461 records in RAM. INFO 2026-06-08 08:26:29 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:185,184,831 INFO 2026-06-08 08:26:29 MarkDuplicates Tracking 118580 as yet unmatched pairs. 78 records in RAM. INFO 2026-06-08 08:26:31 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:186,370,970 INFO 2026-06-08 08:26:31 MarkDuplicates Tracking 122771 as yet unmatched pairs. 2238 records in RAM. INFO 2026-06-08 08:26:32 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:201,383,133 INFO 2026-06-08 08:26:32 MarkDuplicates Tracking 122963 as yet unmatched pairs. 179 records in RAM. INFO 2026-06-08 08:26:34 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:203,180,635 INFO 2026-06-08 08:26:34 MarkDuplicates Tracking 125630 as yet unmatched pairs. 309 records in RAM. INFO 2026-06-08 08:26:36 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:204,433,823 INFO 2026-06-08 08:26:36 MarkDuplicates Tracking 127771 as yet unmatched pairs. 116 records in RAM. INFO 2026-06-08 08:26:38 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:206,937,318 INFO 2026-06-08 08:26:38 MarkDuplicates Tracking 130739 as yet unmatched pairs. 690 records in RAM. INFO 2026-06-08 08:26:39 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:207,337,343 INFO 2026-06-08 08:26:39 MarkDuplicates Tracking 141273 as yet unmatched pairs. 8862 records in RAM. INFO 2026-06-08 08:26:41 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:211,372,532 INFO 2026-06-08 08:26:41 MarkDuplicates Tracking 135082 as yet unmatched pairs. 198 records in RAM. INFO 2026-06-08 08:26:43 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:222,660,298 INFO 2026-06-08 08:26:43 MarkDuplicates Tracking 137644 as yet unmatched pairs. 370 records in RAM. INFO 2026-06-08 08:26:44 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:225,419,390 INFO 2026-06-08 08:26:44 MarkDuplicates Tracking 139935 as yet unmatched pairs. 211 records in RAM. INFO 2026-06-08 08:26:47 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:226,362,042 INFO 2026-06-08 08:26:47 MarkDuplicates Tracking 142647 as yet unmatched pairs. 448 records in RAM. INFO 2026-06-08 08:26:48 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:229,271,312 INFO 2026-06-08 08:26:48 MarkDuplicates Tracking 145349 as yet unmatched pairs. 333 records in RAM. INFO 2026-06-08 08:26:50 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:235,160,512 INFO 2026-06-08 08:26:50 MarkDuplicates Tracking 148228 as yet unmatched pairs. 244 records in RAM. INFO 2026-06-08 08:26:52 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr1:244,705,632 INFO 2026-06-08 08:26:52 MarkDuplicates Tracking 150695 as yet unmatched pairs. 360 records in RAM. INFO 2026-06-08 08:26:56 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 3s. Last read position: chr2:1,649,189 INFO 2026-06-08 08:26:56 MarkDuplicates Tracking 153235 as yet unmatched pairs. 151200 records in RAM. INFO 2026-06-08 08:26:57 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:19,938,320 INFO 2026-06-08 08:26:57 MarkDuplicates Tracking 155522 as yet unmatched pairs. 153433 records in RAM. INFO 2026-06-08 08:27:00 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr2:25,246,283 INFO 2026-06-08 08:27:00 MarkDuplicates Tracking 158100 as yet unmatched pairs. 155983 records in RAM. INFO 2026-06-08 08:27:01 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:28,752,146 INFO 2026-06-08 08:27:01 MarkDuplicates Tracking 165188 as yet unmatched pairs. 163023 records in RAM. INFO 2026-06-08 08:27:03 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,256 INFO 2026-06-08 08:27:03 MarkDuplicates Tracking 199885 as yet unmatched pairs. 158542 records in RAM. INFO 2026-06-08 08:27:05 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:27:05 MarkDuplicates Tracking 681959 as yet unmatched pairs. 134037 records in RAM. INFO 2026-06-08 08:27:07 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,392 INFO 2026-06-08 08:27:07 MarkDuplicates Tracking 1278291 as yet unmatched pairs. 103080 records in RAM. INFO 2026-06-08 08:27:08 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:27:08 MarkDuplicates Tracking 1306939 as yet unmatched pairs. 101500 records in RAM. INFO 2026-06-08 08:27:09 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:36,522,158 INFO 2026-06-08 08:27:09 MarkDuplicates Tracking 1364792 as yet unmatched pairs. 98693 records in RAM. INFO 2026-06-08 08:27:11 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:42,329,756 INFO 2026-06-08 08:27:11 MarkDuplicates Tracking 1364145 as yet unmatched pairs. 98002 records in RAM. INFO 2026-06-08 08:27:13 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:46,377,979 INFO 2026-06-08 08:27:13 MarkDuplicates Tracking 1360937 as yet unmatched pairs. 94748 records in RAM. INFO 2026-06-08 08:27:15 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:54,629,245 INFO 2026-06-08 08:27:15 MarkDuplicates Tracking 1357405 as yet unmatched pairs. 91187 records in RAM. INFO 2026-06-08 08:27:16 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:58,251,995 INFO 2026-06-08 08:27:16 MarkDuplicates Tracking 1354375 as yet unmatched pairs. 88138 records in RAM. INFO 2026-06-08 08:27:18 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:68,186,533 INFO 2026-06-08 08:27:18 MarkDuplicates Tracking 1352435 as yet unmatched pairs. 86147 records in RAM. INFO 2026-06-08 08:27:20 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr2:72,891,379 INFO 2026-06-08 08:27:20 MarkDuplicates Tracking 1349882 as yet unmatched pairs. 83559 records in RAM. INFO 2026-06-08 08:27:22 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:84,906,008 INFO 2026-06-08 08:27:22 MarkDuplicates Tracking 1348762 as yet unmatched pairs. 82409 records in RAM. INFO 2026-06-08 08:27:23 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:85,661,518 INFO 2026-06-08 08:27:23 MarkDuplicates Tracking 1361852 as yet unmatched pairs. 95446 records in RAM. INFO 2026-06-08 08:27:26 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:85,665,343 INFO 2026-06-08 08:27:26 MarkDuplicates Tracking 1358507 as yet unmatched pairs. 92057 records in RAM. INFO 2026-06-08 08:27:27 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:85,667,715 INFO 2026-06-08 08:27:27 MarkDuplicates Tracking 1373966 as yet unmatched pairs. 107493 records in RAM. INFO 2026-06-08 08:27:29 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:95,895,431 INFO 2026-06-08 08:27:29 MarkDuplicates Tracking 1337019 as yet unmatched pairs. 70510 records in RAM. INFO 2026-06-08 08:27:31 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:100,007,340 INFO 2026-06-08 08:27:31 MarkDuplicates Tracking 1334330 as yet unmatched pairs. 67770 records in RAM. INFO 2026-06-08 08:27:33 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:108,751,618 INFO 2026-06-08 08:27:33 MarkDuplicates Tracking 1332875 as yet unmatched pairs. 66281 records in RAM. INFO 2026-06-08 08:27:34 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:110,543,429 INFO 2026-06-08 08:27:34 MarkDuplicates Tracking 1330874 as yet unmatched pairs. 64261 records in RAM. INFO 2026-06-08 08:27:36 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:119,367,027 INFO 2026-06-08 08:27:36 MarkDuplicates Tracking 1329267 as yet unmatched pairs. 62628 records in RAM. INFO 2026-06-08 08:27:37 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:131,528,108 INFO 2026-06-08 08:27:37 MarkDuplicates Tracking 1326187 as yet unmatched pairs. 59501 records in RAM. INFO 2026-06-08 08:27:39 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:151,464,655 INFO 2026-06-08 08:27:39 MarkDuplicates Tracking 1324018 as yet unmatched pairs. 57271 records in RAM. INFO 2026-06-08 08:27:41 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:162,073,985 INFO 2026-06-08 08:27:41 MarkDuplicates Tracking 1321697 as yet unmatched pairs. 54906 records in RAM. INFO 2026-06-08 08:27:42 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:172,427,843 INFO 2026-06-08 08:27:42 MarkDuplicates Tracking 1319646 as yet unmatched pairs. 52803 records in RAM. INFO 2026-06-08 08:27:44 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:178,589,493 INFO 2026-06-08 08:27:44 MarkDuplicates Tracking 1317272 as yet unmatched pairs. 50378 records in RAM. INFO 2026-06-08 08:27:46 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:188,991,499 INFO 2026-06-08 08:27:46 MarkDuplicates Tracking 1317808 as yet unmatched pairs. 50857 records in RAM. INFO 2026-06-08 08:27:47 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:189,045,852 INFO 2026-06-08 08:27:47 MarkDuplicates Tracking 1312761 as yet unmatched pairs. 45783 records in RAM. INFO 2026-06-08 08:27:49 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:191,835,950 INFO 2026-06-08 08:27:49 MarkDuplicates Tracking 1310672 as yet unmatched pairs. 43659 records in RAM. INFO 2026-06-08 08:27:51 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:201,129,848 INFO 2026-06-08 08:27:51 MarkDuplicates Tracking 1308531 as yet unmatched pairs. 41480 records in RAM. INFO 2026-06-08 08:27:52 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:206,159,955 INFO 2026-06-08 08:27:52 MarkDuplicates Tracking 1307803 as yet unmatched pairs. 40711 records in RAM. INFO 2026-06-08 08:27:54 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,362,047 INFO 2026-06-08 08:27:54 MarkDuplicates Tracking 1319937 as yet unmatched pairs. 52818 records in RAM. INFO 2026-06-08 08:27:56 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,118 INFO 2026-06-08 08:27:56 MarkDuplicates Tracking 1324115 as yet unmatched pairs. 56977 records in RAM. INFO 2026-06-08 08:27:58 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,681 INFO 2026-06-08 08:27:58 MarkDuplicates Tracking 1312879 as yet unmatched pairs. 45722 records in RAM. INFO 2026-06-08 08:28:00 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:215,381,069 INFO 2026-06-08 08:28:00 MarkDuplicates Tracking 1316939 as yet unmatched pairs. 49768 records in RAM. INFO 2026-06-08 08:28:03 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:215,391,632 INFO 2026-06-08 08:28:03 MarkDuplicates Tracking 1309237 as yet unmatched pairs. 42053 records in RAM. INFO 2026-06-08 08:28:05 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 2s. Last read position: chr2:215,404,453 INFO 2026-06-08 08:28:05 MarkDuplicates Tracking 1301996 as yet unmatched pairs. 34800 records in RAM. INFO 2026-06-08 08:28:07 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,585 INFO 2026-06-08 08:28:07 MarkDuplicates Tracking 1307063 as yet unmatched pairs. 39850 records in RAM. INFO 2026-06-08 08:28:09 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:215,423,386 INFO 2026-06-08 08:28:09 MarkDuplicates Tracking 1293042 as yet unmatched pairs. 25815 records in RAM. INFO 2026-06-08 08:28:10 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,423 INFO 2026-06-08 08:28:10 MarkDuplicates Tracking 1296029 as yet unmatched pairs. 28785 records in RAM. INFO 2026-06-08 08:28:12 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:217,821,757 INFO 2026-06-08 08:28:12 MarkDuplicates Tracking 1283312 as yet unmatched pairs. 16023 records in RAM. INFO 2026-06-08 08:28:14 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:219,235,779 INFO 2026-06-08 08:28:14 MarkDuplicates Tracking 1280001 as yet unmatched pairs. 12677 records in RAM. INFO 2026-06-08 08:28:16 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:229,797,704 INFO 2026-06-08 08:28:16 MarkDuplicates Tracking 1277582 as yet unmatched pairs. 10232 records in RAM. INFO 2026-06-08 08:28:17 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:232,850,395 INFO 2026-06-08 08:28:17 MarkDuplicates Tracking 1275426 as yet unmatched pairs. 8050 records in RAM. INFO 2026-06-08 08:28:19 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:237,366,956 INFO 2026-06-08 08:28:19 MarkDuplicates Tracking 1273596 as yet unmatched pairs. 6180 records in RAM. INFO 2026-06-08 08:28:21 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:239,990,109 INFO 2026-06-08 08:28:21 MarkDuplicates Tracking 1270594 as yet unmatched pairs. 3147 records in RAM. INFO 2026-06-08 08:28:23 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr3:365,983 INFO 2026-06-08 08:28:23 MarkDuplicates Tracking 1267548 as yet unmatched pairs. 71102 records in RAM. INFO 2026-06-08 08:28:24 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:10,249,248 INFO 2026-06-08 08:28:24 MarkDuplicates Tracking 1265267 as yet unmatched pairs. 68783 records in RAM. INFO 2026-06-08 08:28:27 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr3:14,447,581 INFO 2026-06-08 08:28:27 MarkDuplicates Tracking 1262576 as yet unmatched pairs. 66055 records in RAM. INFO 2026-06-08 08:28:28 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:29,991,165 INFO 2026-06-08 08:28:28 MarkDuplicates Tracking 1260682 as yet unmatched pairs. 64091 records in RAM. INFO 2026-06-08 08:28:30 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:37,494,523 INFO 2026-06-08 08:28:30 MarkDuplicates Tracking 1258085 as yet unmatched pairs. 61467 records in RAM. INFO 2026-06-08 08:28:31 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:41,224,536 INFO 2026-06-08 08:28:31 MarkDuplicates Tracking 1261852 as yet unmatched pairs. 65214 records in RAM. INFO 2026-06-08 08:28:33 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:45,946,570 INFO 2026-06-08 08:28:33 MarkDuplicates Tracking 1253034 as yet unmatched pairs. 56352 records in RAM. INFO 2026-06-08 08:28:35 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:47,921,821 INFO 2026-06-08 08:28:35 MarkDuplicates Tracking 1251180 as yet unmatched pairs. 54472 records in RAM. INFO 2026-06-08 08:28:36 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:49,099,403 INFO 2026-06-08 08:28:36 MarkDuplicates Tracking 1247960 as yet unmatched pairs. 51217 records in RAM. INFO 2026-06-08 08:28:38 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:49,697,161 INFO 2026-06-08 08:28:38 MarkDuplicates Tracking 1245209 as yet unmatched pairs. 48440 records in RAM. INFO 2026-06-08 08:28:40 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:51,427,456 INFO 2026-06-08 08:28:40 MarkDuplicates Tracking 1242476 as yet unmatched pairs. 45674 records in RAM. INFO 2026-06-08 08:28:41 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:52,603,554 INFO 2026-06-08 08:28:41 MarkDuplicates Tracking 1240249 as yet unmatched pairs. 43428 records in RAM. INFO 2026-06-08 08:28:43 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:58,123,312 INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 1237928 as yet unmatched pairs. 41067 records in RAM. INFO 2026-06-08 08:28:45 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:69,964,981 INFO 2026-06-08 08:28:45 MarkDuplicates Tracking 1235616 as yet unmatched pairs. 38686 records in RAM. INFO 2026-06-08 08:28:47 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:99,849,155 INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 1233754 as yet unmatched pairs. 36773 records in RAM. INFO 2026-06-08 08:28:48 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:105,685,356 INFO 2026-06-08 08:28:48 MarkDuplicates Tracking 1231198 as yet unmatched pairs. 34179 records in RAM. INFO 2026-06-08 08:28:51 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:119,416,212 INFO 2026-06-08 08:28:51 MarkDuplicates Tracking 1228788 as yet unmatched pairs. 31709 records in RAM. INFO 2026-06-08 08:28:53 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:123,657,414 INFO 2026-06-08 08:28:53 MarkDuplicates Tracking 1226871 as yet unmatched pairs. 29773 records in RAM. INFO 2026-06-08 08:28:55 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:128,060,545 INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 1224371 as yet unmatched pairs. 27255 records in RAM. INFO 2026-06-08 08:28:57 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:129,605,867 INFO 2026-06-08 08:28:57 MarkDuplicates Tracking 1221630 as yet unmatched pairs. 24480 records in RAM. INFO 2026-06-08 08:28:58 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:136,357,733 INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 1218616 as yet unmatched pairs. 21417 records in RAM. INFO 2026-06-08 08:29:00 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:148,741,297 INFO 2026-06-08 08:29:00 MarkDuplicates Tracking 1216253 as yet unmatched pairs. 19004 records in RAM. INFO 2026-06-08 08:29:02 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:152,432,724 INFO 2026-06-08 08:29:02 MarkDuplicates Tracking 1214406 as yet unmatched pairs. 17122 records in RAM. INFO 2026-06-08 08:29:03 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:160,565,214 INFO 2026-06-08 08:29:03 MarkDuplicates Tracking 1211515 as yet unmatched pairs. 14200 records in RAM. INFO 2026-06-08 08:29:05 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:177,047,494 INFO 2026-06-08 08:29:05 MarkDuplicates Tracking 1209759 as yet unmatched pairs. 12389 records in RAM. INFO 2026-06-08 08:29:07 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr3:184,182,024 INFO 2026-06-08 08:29:07 MarkDuplicates Tracking 1208030 as yet unmatched pairs. 10625 records in RAM. INFO 2026-06-08 08:29:08 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:186,048,614 INFO 2026-06-08 08:29:08 MarkDuplicates Tracking 1204819 as yet unmatched pairs. 7382 records in RAM. INFO 2026-06-08 08:29:10 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:188,872,706 INFO 2026-06-08 08:29:10 MarkDuplicates Tracking 1203747 as yet unmatched pairs. 6270 records in RAM. INFO 2026-06-08 08:29:12 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:195,765,116 INFO 2026-06-08 08:29:12 MarkDuplicates Tracking 1200436 as yet unmatched pairs. 2911 records in RAM. INFO 2026-06-08 08:29:13 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:196,069,477 INFO 2026-06-08 08:29:13 MarkDuplicates Tracking 1198998 as yet unmatched pairs. 1460 records in RAM. INFO 2026-06-08 08:29:15 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 2s. Last read position: chr4:1,003,403 INFO 2026-06-08 08:29:15 MarkDuplicates Tracking 1196539 as yet unmatched pairs. 60664 records in RAM. INFO 2026-06-08 08:29:17 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:2,926,072 INFO 2026-06-08 08:29:17 MarkDuplicates Tracking 1194234 as yet unmatched pairs. 58329 records in RAM. INFO 2026-06-08 08:29:18 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:7,772,874 INFO 2026-06-08 08:29:18 MarkDuplicates Tracking 1192468 as yet unmatched pairs. 56512 records in RAM. INFO 2026-06-08 08:29:20 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:20,257,877 INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 1188434 as yet unmatched pairs. 52451 records in RAM. INFO 2026-06-08 08:29:22 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:25,662,552 INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 1213080 as yet unmatched pairs. 77080 records in RAM. INFO 2026-06-08 08:29:24 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 2s. Last read position: chr4:25,664,212 INFO 2026-06-08 08:29:24 MarkDuplicates Tracking 1208944 as yet unmatched pairs. 72930 records in RAM. INFO 2026-06-08 08:29:25 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:25,667,981 INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 1219841 as yet unmatched pairs. 83804 records in RAM. INFO 2026-06-08 08:29:27 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:25,671,606 INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 1208187 as yet unmatched pairs. 72144 records in RAM. INFO 2026-06-08 08:29:29 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr4:25,673,221 INFO 2026-06-08 08:29:29 MarkDuplicates Tracking 1207290 as yet unmatched pairs. 71234 records in RAM. INFO 2026-06-08 08:29:31 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:25,674,560 INFO 2026-06-08 08:29:31 MarkDuplicates Tracking 1187453 as yet unmatched pairs. 51387 records in RAM. INFO 2026-06-08 08:29:33 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,360 INFO 2026-06-08 08:29:33 MarkDuplicates Tracking 1192692 as yet unmatched pairs. 56612 records in RAM. INFO 2026-06-08 08:29:35 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr4:27,003,025 INFO 2026-06-08 08:29:35 MarkDuplicates Tracking 1170081 as yet unmatched pairs. 33961 records in RAM. INFO 2026-06-08 08:29:37 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:41,605,924 INFO 2026-06-08 08:29:37 MarkDuplicates Tracking 1168319 as yet unmatched pairs. 32144 records in RAM. INFO 2026-06-08 08:29:39 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:54,274,947 INFO 2026-06-08 08:29:39 MarkDuplicates Tracking 1166567 as yet unmatched pairs. 30335 records in RAM. INFO 2026-06-08 08:29:40 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:67,514,638 INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 1163121 as yet unmatched pairs. 26845 records in RAM. INFO 2026-06-08 08:29:42 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:75,800,649 INFO 2026-06-08 08:29:42 MarkDuplicates Tracking 1161382 as yet unmatched pairs. 25083 records in RAM. INFO 2026-06-08 08:29:44 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:82,427,238 INFO 2026-06-08 08:29:44 MarkDuplicates Tracking 1158682 as yet unmatched pairs. 22346 records in RAM. INFO 2026-06-08 08:29:46 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:87,490,855 INFO 2026-06-08 08:29:46 MarkDuplicates Tracking 1157130 as yet unmatched pairs. 20755 records in RAM. INFO 2026-06-08 08:29:47 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr4:99,061,180 INFO 2026-06-08 08:29:47 MarkDuplicates Tracking 1153854 as yet unmatched pairs. 17442 records in RAM. INFO 2026-06-08 08:29:49 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr4:105,970,337 INFO 2026-06-08 08:29:49 MarkDuplicates Tracking 1151429 as yet unmatched pairs. 14993 records in RAM. INFO 2026-06-08 08:29:50 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr4:119,030,433 INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 1149380 as yet unmatched pairs. 12904 records in RAM. INFO 2026-06-08 08:29:52 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr4:128,846,468 INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 1147205 as yet unmatched pairs. 10677 records in RAM. INFO 2026-06-08 08:29:54 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr4:147,624,823 INFO 2026-06-08 08:29:54 MarkDuplicates Tracking 1145146 as yet unmatched pairs. 8570 records in RAM. INFO 2026-06-08 08:29:55 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:153,781,410 INFO 2026-06-08 08:29:55 MarkDuplicates Tracking 1143547 as yet unmatched pairs. 6940 records in RAM. INFO 2026-06-08 08:29:57 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:168,926,217 INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 1140835 as yet unmatched pairs. 4184 records in RAM. INFO 2026-06-08 08:29:59 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr4:184,783,957 INFO 2026-06-08 08:29:59 MarkDuplicates Tracking 1138744 as yet unmatched pairs. 2053 records in RAM. INFO 2026-06-08 08:30:01 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 2s. Last read position: chr5:1,321,781 INFO 2026-06-08 08:30:01 MarkDuplicates Tracking 1136520 as yet unmatched pairs. 96488 records in RAM. INFO 2026-06-08 08:30:03 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:10,282,268 INFO 2026-06-08 08:30:03 MarkDuplicates Tracking 1133673 as yet unmatched pairs. 93598 records in RAM. INFO 2026-06-08 08:30:05 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:14,461,299 INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 1130600 as yet unmatched pairs. 90496 records in RAM. INFO 2026-06-08 08:30:07 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:32,388,482 INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 1127707 as yet unmatched pairs. 87557 records in RAM. INFO 2026-06-08 08:30:08 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:38,918,983 INFO 2026-06-08 08:30:08 MarkDuplicates Tracking 1125969 as yet unmatched pairs. 85785 records in RAM. INFO 2026-06-08 08:30:10 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:43,506,288 INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 1123037 as yet unmatched pairs. 82828 records in RAM. INFO 2026-06-08 08:30:12 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr5:55,957,276 INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 1123103 as yet unmatched pairs. 82852 records in RAM. INFO 2026-06-08 08:30:14 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr5:67,164,690 INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 1118612 as yet unmatched pairs. 78320 records in RAM. INFO 2026-06-08 08:30:16 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:71,458,597 INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 1117505 as yet unmatched pairs. 77158 records in RAM. INFO 2026-06-08 08:30:18 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:75,360,316 INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 1114778 as yet unmatched pairs. 74406 records in RAM. INFO 2026-06-08 08:30:19 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,085 INFO 2026-06-08 08:30:19 MarkDuplicates Tracking 1121176 as yet unmatched pairs. 80761 records in RAM. INFO 2026-06-08 08:30:21 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:87,349,286 INFO 2026-06-08 08:30:21 MarkDuplicates Tracking 1110711 as yet unmatched pairs. 70274 records in RAM. INFO 2026-06-08 08:30:23 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:96,747,380 INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 1108966 as yet unmatched pairs. 68485 records in RAM. INFO 2026-06-08 08:30:25 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:111,192,536 INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 1105563 as yet unmatched pairs. 65052 records in RAM. INFO 2026-06-08 08:30:26 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:124,647,449 INFO 2026-06-08 08:30:26 MarkDuplicates Tracking 1103593 as yet unmatched pairs. 63048 records in RAM. INFO 2026-06-08 08:30:28 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:132,934,612 INFO 2026-06-08 08:30:28 MarkDuplicates Tracking 1101392 as yet unmatched pairs. 60810 records in RAM. INFO 2026-06-08 08:30:29 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:136,054,795 INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 1098950 as yet unmatched pairs. 58350 records in RAM. INFO 2026-06-08 08:30:31 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:138,556,547 INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 1096968 as yet unmatched pairs. 56348 records in RAM. INFO 2026-06-08 08:30:33 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:140,300,497 INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 1093642 as yet unmatched pairs. 52958 records in RAM. INFO 2026-06-08 08:30:34 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:141,193,907 INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 1091324 as yet unmatched pairs. 50626 records in RAM. INFO 2026-06-08 08:30:36 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:141,864,513 INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 1089821 as yet unmatched pairs. 49107 records in RAM. INFO 2026-06-08 08:30:38 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:149,348,340 INFO 2026-06-08 08:30:38 MarkDuplicates Tracking 1086796 as yet unmatched pairs. 46035 records in RAM. INFO 2026-06-08 08:30:40 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:150,135,651 INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 1085660 as yet unmatched pairs. 44873 records in RAM. INFO 2026-06-08 08:30:42 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,203 INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 1178730 as yet unmatched pairs. 137931 records in RAM. INFO 2026-06-08 08:30:44 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,619 INFO 2026-06-08 08:30:44 MarkDuplicates Tracking 1127166 as yet unmatched pairs. 86358 records in RAM. INFO 2026-06-08 08:30:46 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,100 INFO 2026-06-08 08:30:46 MarkDuplicates Tracking 1120363 as yet unmatched pairs. 79545 records in RAM. INFO 2026-06-08 08:30:48 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,267 INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 1135516 as yet unmatched pairs. 94679 records in RAM. INFO 2026-06-08 08:30:50 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,196 INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 1096678 as yet unmatched pairs. 55823 records in RAM. INFO 2026-06-08 08:30:51 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:150,648,908 INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 1069203 as yet unmatched pairs. 28340 records in RAM. INFO 2026-06-08 08:30:53 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:151,676,192 INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 1065836 as yet unmatched pairs. 24949 records in RAM. INFO 2026-06-08 08:30:55 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:157,809,665 INFO 2026-06-08 08:30:55 MarkDuplicates Tracking 1064528 as yet unmatched pairs. 23613 records in RAM. INFO 2026-06-08 08:30:56 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:170,267,014 INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 1061147 as yet unmatched pairs. 20189 records in RAM. INFO 2026-06-08 08:30:58 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,760 INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 1085995 as yet unmatched pairs. 45018 records in RAM. INFO 2026-06-08 08:31:00 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr5:172,768,891 INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 1062673 as yet unmatched pairs. 21681 records in RAM. INFO 2026-06-08 08:31:02 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr5:177,136,883 INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 1054747 as yet unmatched pairs. 13730 records in RAM. INFO 2026-06-08 08:31:03 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr5:178,270,353 INFO 2026-06-08 08:31:03 MarkDuplicates Tracking 1051570 as yet unmatched pairs. 10536 records in RAM. INFO 2026-06-08 08:31:05 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr5:179,799,030 INFO 2026-06-08 08:31:05 MarkDuplicates Tracking 1049445 as yet unmatched pairs. 8378 records in RAM. INFO 2026-06-08 08:31:07 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,433 INFO 2026-06-08 08:31:07 MarkDuplicates Tracking 1056388 as yet unmatched pairs. 15300 records in RAM. INFO 2026-06-08 08:31:08 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr5:180,620,220 INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 1043341 as yet unmatched pairs. 2236 records in RAM. INFO 2026-06-08 08:31:11 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr6:1,313,762 INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 1041037 as yet unmatched pairs. 66478 records in RAM. INFO 2026-06-08 08:31:13 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr6:7,248,541 INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 1038468 as yet unmatched pairs. 63881 records in RAM. INFO 2026-06-08 08:31:15 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr6:16,306,711 INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 1035930 as yet unmatched pairs. 61317 records in RAM. INFO 2026-06-08 08:31:17 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr6:26,123,536 INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 1034959 as yet unmatched pairs. 60288 records in RAM. INFO 2026-06-08 08:31:19 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr6:29,888,672 INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 1031315 as yet unmatched pairs. 56626 records in RAM. INFO 2026-06-08 08:31:20 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:30,704,537 INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 1028420 as yet unmatched pairs. 53717 records in RAM. INFO 2026-06-08 08:31:22 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:31,355,199 INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 1029448 as yet unmatched pairs. 54734 records in RAM. INFO 2026-06-08 08:31:24 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:31,669,322 INFO 2026-06-08 08:31:24 MarkDuplicates Tracking 1024744 as yet unmatched pairs. 49993 records in RAM. INFO 2026-06-08 08:31:25 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,456 INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 1022904 as yet unmatched pairs. 48136 records in RAM. INFO 2026-06-08 08:31:27 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:32,034,897 INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 1020500 as yet unmatched pairs. 45720 records in RAM. INFO 2026-06-08 08:31:28 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:32,196,376 INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 1017427 as yet unmatched pairs. 42622 records in RAM. INFO 2026-06-08 08:31:30 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:32,837,747 INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 1015912 as yet unmatched pairs. 41097 records in RAM. INFO 2026-06-08 08:31:32 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:33,272,090 INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 1012978 as yet unmatched pairs. 38140 records in RAM. INFO 2026-06-08 08:31:33 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:34,288,804 INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 1010168 as yet unmatched pairs. 35309 records in RAM. INFO 2026-06-08 08:31:35 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:36,919,673 INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 1007976 as yet unmatched pairs. 33092 records in RAM. INFO 2026-06-08 08:31:37 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:42,974,983 INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 1005149 as yet unmatched pairs. 30224 records in RAM. INFO 2026-06-08 08:31:39 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr6:44,251,738 INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 1003229 as yet unmatched pairs. 28283 records in RAM. INFO 2026-06-08 08:31:40 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:56,469,885 INFO 2026-06-08 08:31:40 MarkDuplicates Tracking 1000506 as yet unmatched pairs. 25443 records in RAM. INFO 2026-06-08 08:31:42 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:73,823,553 INFO 2026-06-08 08:31:42 MarkDuplicates Tracking 998140 as yet unmatched pairs. 23034 records in RAM. INFO 2026-06-08 08:31:44 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:87,521,501 INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 996057 as yet unmatched pairs. 20923 records in RAM. INFO 2026-06-08 08:31:46 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr6:108,663,964 INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 994401 as yet unmatched pairs. 19239 records in RAM. INFO 2026-06-08 08:31:48 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:117,341,551 INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 991722 as yet unmatched pairs. 16531 records in RAM. INFO 2026-06-08 08:31:50 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:128,009,130 INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 988850 as yet unmatched pairs. 13631 records in RAM. INFO 2026-06-08 08:31:52 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr6:136,792,188 INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 986166 as yet unmatched pairs. 10910 records in RAM. INFO 2026-06-08 08:31:53 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:147,316,325 INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 983693 as yet unmatched pairs. 8390 records in RAM. INFO 2026-06-08 08:31:55 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:153,282,472 INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 981807 as yet unmatched pairs. 6468 records in RAM. INFO 2026-06-08 08:31:57 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:159,233,059 INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 979235 as yet unmatched pairs. 3866 records in RAM. INFO 2026-06-08 08:31:59 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:167,951,554 INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 976939 as yet unmatched pairs. 1548 records in RAM. INFO 2026-06-08 08:32:01 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr7:2,278,248 INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 973907 as yet unmatched pairs. 64980 records in RAM. INFO 2026-06-08 08:32:03 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:5,388,489 INFO 2026-06-08 08:32:03 MarkDuplicates Tracking 971695 as yet unmatched pairs. 62735 records in RAM. INFO 2026-06-08 08:32:04 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,565 INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 979076 as yet unmatched pairs. 70101 records in RAM. INFO 2026-06-08 08:32:06 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:6,432,936 INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 965600 as yet unmatched pairs. 56598 records in RAM. INFO 2026-06-08 08:32:08 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:22,166,552 INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 963341 as yet unmatched pairs. 54323 records in RAM. INFO 2026-06-08 08:32:10 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:30,622,448 INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 961225 as yet unmatched pairs. 52171 records in RAM. INFO 2026-06-08 08:32:11 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:43,878,676 INFO 2026-06-08 08:32:11 MarkDuplicates Tracking 958367 as yet unmatched pairs. 49287 records in RAM. INFO 2026-06-08 08:32:13 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:44,645,378 INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 956269 as yet unmatched pairs. 47168 records in RAM. INFO 2026-06-08 08:32:15 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:55,154,057 INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 954404 as yet unmatched pairs. 45266 records in RAM. INFO 2026-06-08 08:32:17 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:66,948,638 INFO 2026-06-08 08:32:17 MarkDuplicates Tracking 951192 as yet unmatched pairs. 42037 records in RAM. INFO 2026-06-08 08:32:19 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:73,831,267 INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 949966 as yet unmatched pairs. 40791 records in RAM. INFO 2026-06-08 08:33:17 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 58s. Last read position: chr7:75,422,169 INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 947336 as yet unmatched pairs. 38149 records in RAM. INFO 2026-06-08 08:33:19 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr7:76,440,245 INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 944890 as yet unmatched pairs. 35690 records in RAM. INFO 2026-06-08 08:33:21 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr7:91,265,938 INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 942882 as yet unmatched pairs. 33649 records in RAM. INFO 2026-06-08 08:33:22 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr7:94,406,264 INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 943598 as yet unmatched pairs. 34342 records in RAM. INFO 2026-06-08 08:33:24 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:94,429,370 INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 939162 as yet unmatched pairs. 29883 records in RAM. INFO 2026-06-08 08:33:26 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr7:99,396,691 INFO 2026-06-08 08:33:26 MarkDuplicates Tracking 935072 as yet unmatched pairs. 25770 records in RAM. INFO 2026-06-08 08:33:28 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr7:100,602,498 INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 932961 as yet unmatched pairs. 23634 records in RAM. INFO 2026-06-08 08:33:29 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr7:102,354,783 INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 929936 as yet unmatched pairs. 20587 records in RAM. INFO 2026-06-08 08:33:31 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr7:104,669,083 INFO 2026-06-08 08:33:31 MarkDuplicates Tracking 928847 as yet unmatched pairs. 19477 records in RAM. INFO 2026-06-08 08:33:32 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr7:111,977,138 INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 926982 as yet unmatched pairs. 17575 records in RAM. INFO 2026-06-08 08:33:34 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr7:122,663,255 INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 924932 as yet unmatched pairs. 15500 records in RAM. INFO 2026-06-08 08:33:36 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr7:128,801,310 INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 921676 as yet unmatched pairs. 12220 records in RAM. INFO 2026-06-08 08:33:38 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr7:137,722,582 INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 919454 as yet unmatched pairs. 9951 records in RAM. INFO 2026-06-08 08:33:40 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr7:140,794,322 INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 918251 as yet unmatched pairs. 8721 records in RAM. INFO 2026-06-08 08:33:42 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr7:149,071,706 INFO 2026-06-08 08:33:42 MarkDuplicates Tracking 914955 as yet unmatched pairs. 5409 records in RAM. INFO 2026-06-08 08:33:43 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr7:151,275,148 INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 912080 as yet unmatched pairs. 2514 records in RAM. INFO 2026-06-08 08:33:45 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:492,449 INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 909950 as yet unmatched pairs. 54545 records in RAM. INFO 2026-06-08 08:33:47 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:11,852,671 INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 907637 as yet unmatched pairs. 52213 records in RAM. INFO 2026-06-08 08:33:49 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:18,075,553 INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 905006 as yet unmatched pairs. 49554 records in RAM. INFO 2026-06-08 08:33:50 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:22,164,358 INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 901830 as yet unmatched pairs. 46365 records in RAM. INFO 2026-06-08 08:33:52 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:23,571,326 INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 899395 as yet unmatched pairs. 43906 records in RAM. INFO 2026-06-08 08:33:54 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:29,350,189 INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 896781 as yet unmatched pairs. 41267 records in RAM. INFO 2026-06-08 08:33:55 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:38,247,763 INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 894517 as yet unmatched pairs. 38976 records in RAM. INFO 2026-06-08 08:33:57 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:38,846,777 INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 894067 as yet unmatched pairs. 38514 records in RAM. INFO 2026-06-08 08:33:59 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:43,199,431 INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 889958 as yet unmatched pairs. 34373 records in RAM. INFO 2026-06-08 08:34:00 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:56,010,059 INFO 2026-06-08 08:34:00 MarkDuplicates Tracking 887031 as yet unmatched pairs. 31418 records in RAM. INFO 2026-06-08 08:34:02 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr8:67,043,197 INFO 2026-06-08 08:34:02 MarkDuplicates Tracking 884735 as yet unmatched pairs. 29094 records in RAM. INFO 2026-06-08 08:34:04 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:73,976,411 INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 882960 as yet unmatched pairs. 27292 records in RAM. INFO 2026-06-08 08:34:05 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:94,674,336 INFO 2026-06-08 08:34:05 MarkDuplicates Tracking 880900 as yet unmatched pairs. 25206 records in RAM. INFO 2026-06-08 08:34:07 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:100,704,935 INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 882225 as yet unmatched pairs. 26500 records in RAM. INFO 2026-06-08 08:34:08 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:102,651,898 INFO 2026-06-08 08:34:08 MarkDuplicates Tracking 875601 as yet unmatched pairs. 19846 records in RAM. INFO 2026-06-08 08:34:10 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:119,564,897 INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 873321 as yet unmatched pairs. 17538 records in RAM. INFO 2026-06-08 08:34:12 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,565 INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 871771 as yet unmatched pairs. 15956 records in RAM. INFO 2026-06-08 08:34:14 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr8:141,165,260 INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 867914 as yet unmatched pairs. 12066 records in RAM. INFO 2026-06-08 08:34:15 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:143,735,871 INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 864869 as yet unmatched pairs. 8989 records in RAM. INFO 2026-06-08 08:34:17 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,234 INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 863474 as yet unmatched pairs. 7581 records in RAM. INFO 2026-06-08 08:34:18 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr8:143,932,841 INFO 2026-06-08 08:34:18 MarkDuplicates Tracking 861662 as yet unmatched pairs. 5748 records in RAM. INFO 2026-06-08 08:34:20 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr8:144,426,179 INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 857230 as yet unmatched pairs. 1295 records in RAM. INFO 2026-06-08 08:34:23 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr9:5,770,088 INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 854742 as yet unmatched pairs. 48919 records in RAM. INFO 2026-06-08 08:34:26 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr9:19,126,122 INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 853282 as yet unmatched pairs. 47393 records in RAM. INFO 2026-06-08 08:34:28 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr9:33,467,503 INFO 2026-06-08 08:34:28 MarkDuplicates Tracking 850230 as yet unmatched pairs. 44317 records in RAM. INFO 2026-06-08 08:34:30 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:35,704,029 INFO 2026-06-08 08:34:30 MarkDuplicates Tracking 848424 as yet unmatched pairs. 42482 records in RAM. INFO 2026-06-08 08:34:32 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:67,191,039 INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 845090 as yet unmatched pairs. 39119 records in RAM. INFO 2026-06-08 08:34:34 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:77,922,193 INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 843186 as yet unmatched pairs. 37201 records in RAM. INFO 2026-06-08 08:34:35 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:92,046,021 INFO 2026-06-08 08:34:35 MarkDuplicates Tracking 840731 as yet unmatched pairs. 34700 records in RAM. INFO 2026-06-08 08:34:37 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:97,700,607 INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 838114 as yet unmatched pairs. 32072 records in RAM. INFO 2026-06-08 08:34:39 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:107,311,680 INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 836483 as yet unmatched pairs. 30426 records in RAM. INFO 2026-06-08 08:34:41 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:113,178,663 INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 833443 as yet unmatched pairs. 27369 records in RAM. INFO 2026-06-08 08:34:43 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:115,084,322 INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 831522 as yet unmatched pairs. 25429 records in RAM. INFO 2026-06-08 08:34:44 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:121,341,226 INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 829364 as yet unmatched pairs. 23253 records in RAM. INFO 2026-06-08 08:34:46 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:126,880,695 INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 825792 as yet unmatched pairs. 19652 records in RAM. INFO 2026-06-08 08:34:48 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr9:128,163,512 INFO 2026-06-08 08:34:48 MarkDuplicates Tracking 823238 as yet unmatched pairs. 17073 records in RAM. INFO 2026-06-08 08:34:50 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:128,979,299 INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 820499 as yet unmatched pairs. 14320 records in RAM. INFO 2026-06-08 08:34:52 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr9:131,175,554 INFO 2026-06-08 08:34:52 MarkDuplicates Tracking 817914 as yet unmatched pairs. 11720 records in RAM. INFO 2026-06-08 08:34:54 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr9:133,350,265 INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 820123 as yet unmatched pairs. 13899 records in RAM. INFO 2026-06-08 08:34:57 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr9:135,487,195 INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 812539 as yet unmatched pairs. 6289 records in RAM. INFO 2026-06-08 08:34:59 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:136,850,129 INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 810187 as yet unmatched pairs. 3920 records in RAM. INFO 2026-06-08 08:35:00 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr9:137,716,813 INFO 2026-06-08 08:35:00 MarkDuplicates Tracking 806734 as yet unmatched pairs. 446 records in RAM. INFO 2026-06-08 08:35:03 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 2s. Last read position: chr10:6,222,905 INFO 2026-06-08 08:35:03 MarkDuplicates Tracking 804553 as yet unmatched pairs. 48820 records in RAM. INFO 2026-06-08 08:35:05 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:17,233,918 INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 803121 as yet unmatched pairs. 47358 records in RAM. INFO 2026-06-08 08:35:06 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:27,148,950 INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 799474 as yet unmatched pairs. 43681 records in RAM. INFO 2026-06-08 08:35:08 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:32,271,560 INFO 2026-06-08 08:35:08 MarkDuplicates Tracking 797525 as yet unmatched pairs. 41711 records in RAM. INFO 2026-06-08 08:35:10 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:44,377,796 INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 795287 as yet unmatched pairs. 39445 records in RAM. INFO 2026-06-08 08:35:11 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:47,502,089 INFO 2026-06-08 08:35:11 MarkDuplicates Tracking 792736 as yet unmatched pairs. 36876 records in RAM. INFO 2026-06-08 08:35:13 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:60,234,742 INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 790498 as yet unmatched pairs. 34617 records in RAM. INFO 2026-06-08 08:35:15 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:70,153,929 INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 788937 as yet unmatched pairs. 33029 records in RAM. INFO 2026-06-08 08:35:16 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:73,387,734 INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 786065 as yet unmatched pairs. 30144 records in RAM. INFO 2026-06-08 08:35:18 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:77,856,726 INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 782785 as yet unmatched pairs. 26828 records in RAM. INFO 2026-06-08 08:35:20 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:79,557,449 INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 796753 as yet unmatched pairs. 40776 records in RAM. INFO 2026-06-08 08:35:22 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr10:79,611,809 INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 783079 as yet unmatched pairs. 27089 records in RAM. INFO 2026-06-08 08:35:24 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:80,163,588 INFO 2026-06-08 08:35:24 MarkDuplicates Tracking 776886 as yet unmatched pairs. 20884 records in RAM. INFO 2026-06-08 08:35:26 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr10:89,207,158 INFO 2026-06-08 08:35:26 MarkDuplicates Tracking 773915 as yet unmatched pairs. 17890 records in RAM. INFO 2026-06-08 08:35:28 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr10:95,864,771 INFO 2026-06-08 08:35:28 MarkDuplicates Tracking 771769 as yet unmatched pairs. 15727 records in RAM. INFO 2026-06-08 08:35:30 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr10:100,529,767 INFO 2026-06-08 08:35:30 MarkDuplicates Tracking 768877 as yet unmatched pairs. 12813 records in RAM. INFO 2026-06-08 08:35:31 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr10:102,812,668 INFO 2026-06-08 08:35:31 MarkDuplicates Tracking 766566 as yet unmatched pairs. 10484 records in RAM. INFO 2026-06-08 08:35:33 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:113,852,797 INFO 2026-06-08 08:35:33 MarkDuplicates Tracking 763820 as yet unmatched pairs. 7714 records in RAM. INFO 2026-06-08 08:35:35 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:121,483,723 INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 761925 as yet unmatched pairs. 5796 records in RAM. INFO 2026-06-08 08:35:36 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr10:122,605,859 INFO 2026-06-08 08:35:36 MarkDuplicates Tracking 760550 as yet unmatched pairs. 4406 records in RAM. INFO 2026-06-08 08:35:38 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr10:127,127,676 INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 758076 as yet unmatched pairs. 1903 records in RAM. INFO 2026-06-08 08:35:41 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr11:293,635 INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 759014 as yet unmatched pairs. 124157 records in RAM. INFO 2026-06-08 08:35:42 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:320,622 INFO 2026-06-08 08:35:42 MarkDuplicates Tracking 768875 as yet unmatched pairs. 134006 records in RAM. INFO 2026-06-08 08:35:44 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:802,381 INFO 2026-06-08 08:35:44 MarkDuplicates Tracking 749996 as yet unmatched pairs. 115105 records in RAM. INFO 2026-06-08 08:35:46 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:1,229,227 INFO 2026-06-08 08:35:46 MarkDuplicates Tracking 749275 as yet unmatched pairs. 114366 records in RAM. INFO 2026-06-08 08:35:48 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:1,242,396 INFO 2026-06-08 08:35:48 MarkDuplicates Tracking 746768 as yet unmatched pairs. 111845 records in RAM. INFO 2026-06-08 08:35:50 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,168 INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 746057 as yet unmatched pairs. 111130 records in RAM. INFO 2026-06-08 08:35:52 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,744 INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 749207 as yet unmatched pairs. 114278 records in RAM. INFO 2026-06-08 08:35:54 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr11:1,244,385 INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 752570 as yet unmatched pairs. 117640 records in RAM. INFO 2026-06-08 08:35:55 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,956 INFO 2026-06-08 08:35:55 MarkDuplicates Tracking 745874 as yet unmatched pairs. 110943 records in RAM. INFO 2026-06-08 08:35:56 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,347 INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 744583 as yet unmatched pairs. 109652 records in RAM. INFO 2026-06-08 08:35:58 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,452 INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 745731 as yet unmatched pairs. 110797 records in RAM. INFO 2026-06-08 08:35:59 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,122 INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 744790 as yet unmatched pairs. 109851 records in RAM. INFO 2026-06-08 08:36:01 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,747 INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 744286 as yet unmatched pairs. 109343 records in RAM. INFO 2026-06-08 08:36:02 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,255 INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 739461 as yet unmatched pairs. 104518 records in RAM. INFO 2026-06-08 08:36:03 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,866 INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 740973 as yet unmatched pairs. 106024 records in RAM. INFO 2026-06-08 08:36:05 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,490 INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 738338 as yet unmatched pairs. 103383 records in RAM. INFO 2026-06-08 08:36:06 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,402 INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 733388 as yet unmatched pairs. 98431 records in RAM. INFO 2026-06-08 08:36:08 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:1,251,063 INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 731300 as yet unmatched pairs. 96342 records in RAM. INFO 2026-06-08 08:36:10 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:1,259,960 INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 729902 as yet unmatched pairs. 94932 records in RAM. INFO 2026-06-08 08:36:11 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:1,759,601 INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 731780 as yet unmatched pairs. 96795 records in RAM. INFO 2026-06-08 08:36:13 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:2,928,915 INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 720410 as yet unmatched pairs. 85406 records in RAM. INFO 2026-06-08 08:36:15 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:6,610,936 INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 718037 as yet unmatched pairs. 83018 records in RAM. INFO 2026-06-08 08:36:17 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:9,287,768 INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 714785 as yet unmatched pairs. 79758 records in RAM. INFO 2026-06-08 08:36:18 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:12,209,517 INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 712408 as yet unmatched pairs. 77361 records in RAM. INFO 2026-06-08 08:36:20 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:18,394,609 INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 713000 as yet unmatched pairs. 77932 records in RAM. INFO 2026-06-08 08:36:22 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr11:33,286,882 INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 708915 as yet unmatched pairs. 73833 records in RAM. INFO 2026-06-08 08:36:25 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 2s. Last read position: chr11:36,489,963 INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 705203 as yet unmatched pairs. 70106 records in RAM. INFO 2026-06-08 08:36:27 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr11:46,681,360 INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 702944 as yet unmatched pairs. 67833 records in RAM. INFO 2026-06-08 08:36:28 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:57,308,749 INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 700383 as yet unmatched pairs. 65257 records in RAM. INFO 2026-06-08 08:36:30 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:57,614,381 INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 699630 as yet unmatched pairs. 64494 records in RAM. INFO 2026-06-08 08:36:32 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:60,902,849 INFO 2026-06-08 08:36:32 MarkDuplicates Tracking 695885 as yet unmatched pairs. 60739 records in RAM. INFO 2026-06-08 08:36:34 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:61,967,443 INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 693330 as yet unmatched pairs. 58170 records in RAM. INFO 2026-06-08 08:36:35 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:62,525,682 INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 692433 as yet unmatched pairs. 57263 records in RAM. INFO 2026-06-08 08:36:37 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,731 INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 691844 as yet unmatched pairs. 56666 records in RAM. INFO 2026-06-08 08:36:39 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:62,801,182 INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 686360 as yet unmatched pairs. 51175 records in RAM. INFO 2026-06-08 08:36:40 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:64,289,101 INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 683266 as yet unmatched pairs. 48062 records in RAM. INFO 2026-06-08 08:36:42 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:65,121,009 INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 683507 as yet unmatched pairs. 48285 records in RAM. INFO 2026-06-08 08:36:44 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr11:65,581,672 INFO 2026-06-08 08:36:44 MarkDuplicates Tracking 677859 as yet unmatched pairs. 42495 records in RAM. INFO 2026-06-08 08:36:46 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:65,888,115 INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 674785 as yet unmatched pairs. 39414 records in RAM. INFO 2026-06-08 08:36:47 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr11:66,693,814 INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 671930 as yet unmatched pairs. 36542 records in RAM. INFO 2026-06-08 08:36:49 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr11:67,586,106 INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 671305 as yet unmatched pairs. 35903 records in RAM. INFO 2026-06-08 08:36:51 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,481 INFO 2026-06-08 08:36:51 MarkDuplicates Tracking 668282 as yet unmatched pairs. 32867 records in RAM. INFO 2026-06-08 08:36:52 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr11:72,015,514 INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 664052 as yet unmatched pairs. 28626 records in RAM. INFO 2026-06-08 08:36:54 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr11:73,647,719 INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 661067 as yet unmatched pairs. 25624 records in RAM. INFO 2026-06-08 08:36:57 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr11:76,352,408 INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 658487 as yet unmatched pairs. 23038 records in RAM. INFO 2026-06-08 08:36:59 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 2s. Last read position: chr11:86,808,246 INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 656448 as yet unmatched pairs. 20987 records in RAM. INFO 2026-06-08 08:37:01 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr11:100,976,039 INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 653649 as yet unmatched pairs. 18173 records in RAM. INFO 2026-06-08 08:37:02 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:108,310,230 INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 651620 as yet unmatched pairs. 16130 records in RAM. INFO 2026-06-08 08:37:04 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:114,253,456 INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 649353 as yet unmatched pairs. 13839 records in RAM. INFO 2026-06-08 08:37:06 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr11:118,409,021 INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 646772 as yet unmatched pairs. 11238 records in RAM. INFO 2026-06-08 08:37:07 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:118,908,643 INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 644296 as yet unmatched pairs. 8747 records in RAM. INFO 2026-06-08 08:37:09 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr11:121,604,242 INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 641902 as yet unmatched pairs. 6344 records in RAM. INFO 2026-06-08 08:37:11 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr11:126,271,496 INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 639353 as yet unmatched pairs. 3781 records in RAM. INFO 2026-06-08 08:37:13 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr11:130,903,333 INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 637021 as yet unmatched pairs. 1435 records in RAM. INFO 2026-06-08 08:37:15 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr12:885,593 INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 634779 as yet unmatched pairs. 89751 records in RAM. INFO 2026-06-08 08:37:17 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:6,022,826 INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 632347 as yet unmatched pairs. 87303 records in RAM. INFO 2026-06-08 08:37:19 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:6,583,027 INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 629595 as yet unmatched pairs. 84530 records in RAM. INFO 2026-06-08 08:37:21 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:6,944,564 INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 628180 as yet unmatched pairs. 83100 records in RAM. INFO 2026-06-08 08:37:22 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:7,498,921 INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 625301 as yet unmatched pairs. 80213 records in RAM. INFO 2026-06-08 08:37:24 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:9,101,144 INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 623773 as yet unmatched pairs. 78677 records in RAM. INFO 2026-06-08 08:37:26 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr12:12,111,157 INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 619464 as yet unmatched pairs. 74350 records in RAM. INFO 2026-06-08 08:37:29 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 2s. Last read position: chr12:15,640,752 INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 618490 as yet unmatched pairs. 73353 records in RAM. INFO 2026-06-08 08:37:31 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr12:26,656,376 INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 615108 as yet unmatched pairs. 69942 records in RAM. INFO 2026-06-08 08:37:33 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:40,283,973 INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 614932 as yet unmatched pairs. 69747 records in RAM. INFO 2026-06-08 08:37:34 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:46,363,780 INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 612565 as yet unmatched pairs. 67359 records in RAM. INFO 2026-06-08 08:37:36 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:49,038,249 INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 607924 as yet unmatched pairs. 62705 records in RAM. INFO 2026-06-08 08:37:38 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:49,642,276 INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 605446 as yet unmatched pairs. 60218 records in RAM. INFO 2026-06-08 08:37:39 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:51,292,314 INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 602985 as yet unmatched pairs. 57748 records in RAM. INFO 2026-06-08 08:37:41 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:53,018,820 INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 601662 as yet unmatched pairs. 56407 records in RAM. INFO 2026-06-08 08:37:43 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,555 INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 601139 as yet unmatched pairs. 55875 records in RAM. INFO 2026-06-08 08:37:44 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,092 INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 599668 as yet unmatched pairs. 54396 records in RAM. INFO 2026-06-08 08:37:46 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:55,800,890 INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 593355 as yet unmatched pairs. 48068 records in RAM. INFO 2026-06-08 08:37:48 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:56,165,536 INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 590902 as yet unmatched pairs. 45609 records in RAM. INFO 2026-06-08 08:37:50 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr12:56,712,833 INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 594276 as yet unmatched pairs. 48965 records in RAM. INFO 2026-06-08 08:37:51 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr12:57,099,373 INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 588574 as yet unmatched pairs. 43257 records in RAM. INFO 2026-06-08 08:37:53 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr12:57,187,411 INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 584707 as yet unmatched pairs. 39382 records in RAM. INFO 2026-06-08 08:37:55 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr12:57,597,995 INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 580666 as yet unmatched pairs. 35337 records in RAM. INFO 2026-06-08 08:37:57 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 2s. Last read position: chr12:64,743,203 INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 578756 as yet unmatched pairs. 33417 records in RAM. INFO 2026-06-08 08:38:00 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr12:69,755,637 INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 575848 as yet unmatched pairs. 30497 records in RAM. INFO 2026-06-08 08:38:02 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:89,349,163 INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 573624 as yet unmatched pairs. 28261 records in RAM. INFO 2026-06-08 08:38:04 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:94,244,009 INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 571135 as yet unmatched pairs. 25768 records in RAM. INFO 2026-06-08 08:38:06 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:101,714,227 INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 568942 as yet unmatched pairs. 23570 records in RAM. INFO 2026-06-08 08:38:07 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr12:106,457,264 INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 566485 as yet unmatched pairs. 21099 records in RAM. INFO 2026-06-08 08:38:09 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr12:110,340,791 INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 564670 as yet unmatched pairs. 19275 records in RAM. INFO 2026-06-08 08:38:11 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr12:112,208,588 INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 561495 as yet unmatched pairs. 16074 records in RAM. INFO 2026-06-08 08:38:12 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr12:116,003,044 INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 558965 as yet unmatched pairs. 13536 records in RAM. INFO 2026-06-08 08:38:14 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr12:120,199,441 INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 559754 as yet unmatched pairs. 14292 records in RAM. INFO 2026-06-08 08:38:16 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,397 INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 555593 as yet unmatched pairs. 10126 records in RAM. INFO 2026-06-08 08:38:18 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr12:123,937,255 INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 551374 as yet unmatched pairs. 5898 records in RAM. INFO 2026-06-08 08:38:20 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr12:124,964,933 INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 548940 as yet unmatched pairs. 3455 records in RAM. INFO 2026-06-08 08:38:21 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr12:132,784,151 INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 546533 as yet unmatched pairs. 1034 records in RAM. INFO 2026-06-08 08:38:23 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr13:24,302,628 INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 543765 as yet unmatched pairs. 20290 records in RAM. INFO 2026-06-08 08:38:25 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr13:32,678,858 INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 541604 as yet unmatched pairs. 18107 records in RAM. INFO 2026-06-08 08:38:27 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr13:43,881,099 INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 539181 as yet unmatched pairs. 15660 records in RAM. INFO 2026-06-08 08:38:29 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr13:48,256,311 INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 538270 as yet unmatched pairs. 14740 records in RAM. INFO 2026-06-08 08:38:31 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr13:75,821,379 INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 534987 as yet unmatched pairs. 11444 records in RAM. INFO 2026-06-08 08:38:34 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr13:98,395,396 INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 532294 as yet unmatched pairs. 8737 records in RAM. INFO 2026-06-08 08:38:36 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr13:110,161,231 INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 529933 as yet unmatched pairs. 6354 records in RAM. INFO 2026-06-08 08:38:37 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr13:111,243,875 INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 526919 as yet unmatched pairs. 3327 records in RAM. INFO 2026-06-08 08:38:39 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 2s. Last read position: chr14:16,890,192 INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 523614 as yet unmatched pairs. 46171 records in RAM. INFO 2026-06-08 08:38:41 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr14:21,500,568 INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 521414 as yet unmatched pairs. 43957 records in RAM. INFO 2026-06-08 08:38:43 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr14:23,527,738 INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 518745 as yet unmatched pairs. 41279 records in RAM. INFO 2026-06-08 08:38:45 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr14:24,441,744 INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 516502 as yet unmatched pairs. 39029 records in RAM. INFO 2026-06-08 08:38:47 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr14:35,654,458 INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 514184 as yet unmatched pairs. 36699 records in RAM. INFO 2026-06-08 08:38:48 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,613 INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 512019 as yet unmatched pairs. 34500 records in RAM. INFO 2026-06-08 08:38:50 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr14:55,411,659 INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 509018 as yet unmatched pairs. 31472 records in RAM. INFO 2026-06-08 08:38:52 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr14:63,453,831 INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 506791 as yet unmatched pairs. 29234 records in RAM. INFO 2026-06-08 08:38:54 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr14:67,587,077 INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 504107 as yet unmatched pairs. 26537 records in RAM. INFO 2026-06-08 08:38:56 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 2s. Last read position: chr14:70,732,627 INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 501513 as yet unmatched pairs. 23937 records in RAM. INFO 2026-06-08 08:38:58 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr14:74,484,450 INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 502799 as yet unmatched pairs. 25218 records in RAM. INFO 2026-06-08 08:39:00 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 2s. Last read position: chr14:75,176,363 INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 497523 as yet unmatched pairs. 19922 records in RAM. INFO 2026-06-08 08:39:02 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr14:81,220,565 INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 493968 as yet unmatched pairs. 16361 records in RAM. INFO 2026-06-08 08:39:04 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr14:92,711,670 INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 491693 as yet unmatched pairs. 14072 records in RAM. INFO 2026-06-08 08:39:06 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr14:96,556,212 INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 489277 as yet unmatched pairs. 11649 records in RAM. INFO 2026-06-08 08:39:08 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr14:102,042,478 INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 486796 as yet unmatched pairs. 9131 records in RAM. INFO 2026-06-08 08:39:09 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr14:103,740,512 INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 483857 as yet unmatched pairs. 6187 records in RAM. INFO 2026-06-08 08:39:11 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr14:104,950,378 INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 482186 as yet unmatched pairs. 4504 records in RAM. INFO 2026-06-08 08:39:13 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,473 INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 479278 as yet unmatched pairs. 1588 records in RAM. INFO 2026-06-08 08:39:14 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr15:28,169,581 INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 476845 as yet unmatched pairs. 39462 records in RAM. INFO 2026-06-08 08:39:16 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr15:34,556,458 INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 474607 as yet unmatched pairs. 37219 records in RAM. INFO 2026-06-08 08:39:18 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr15:40,853,581 INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 472528 as yet unmatched pairs. 35125 records in RAM. INFO 2026-06-08 08:39:20 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr15:42,691,574 INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 469658 as yet unmatched pairs. 32248 records in RAM. INFO 2026-06-08 08:39:22 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr15:44,337,888 INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 468294 as yet unmatched pairs. 30877 records in RAM. INFO 2026-06-08 08:39:24 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr15:49,134,065 INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 465074 as yet unmatched pairs. 27646 records in RAM. INFO 2026-06-08 08:39:26 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr15:57,192,262 INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 464930 as yet unmatched pairs. 27489 records in RAM. INFO 2026-06-08 08:39:28 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr15:61,927,175 INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 460579 as yet unmatched pairs. 23122 records in RAM. INFO 2026-06-08 08:39:30 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr15:64,965,372 INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 458528 as yet unmatched pairs. 21060 records in RAM. INFO 2026-06-08 08:39:31 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr15:68,787,801 INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 456321 as yet unmatched pairs. 18838 records in RAM. INFO 2026-06-08 08:39:33 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr15:73,561,011 INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 454312 as yet unmatched pairs. 16823 records in RAM. INFO 2026-06-08 08:39:35 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr15:74,890,569 INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 450525 as yet unmatched pairs. 13033 records in RAM. INFO 2026-06-08 08:39:36 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr15:78,013,092 INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 447819 as yet unmatched pairs. 10319 records in RAM. INFO 2026-06-08 08:39:38 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr15:83,030,229 INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 445465 as yet unmatched pairs. 7959 records in RAM. INFO 2026-06-08 08:39:40 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr15:87,872,036 INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 443127 as yet unmatched pairs. 5604 records in RAM. INFO 2026-06-08 08:39:41 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr15:90,429,642 INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 441576 as yet unmatched pairs. 4047 records in RAM. INFO 2026-06-08 08:39:43 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr15:99,287,276 INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 438389 as yet unmatched pairs. 848 records in RAM. INFO 2026-06-08 08:39:45 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr16:671,747 INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 435732 as yet unmatched pairs. 61313 records in RAM. INFO 2026-06-08 08:39:48 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr16:1,770,786 INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 433150 as yet unmatched pairs. 58721 records in RAM. INFO 2026-06-08 08:39:50 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 2s. Last read position: chr16:2,281,056 INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 429971 as yet unmatched pairs. 55524 records in RAM. INFO 2026-06-08 08:39:51 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:2,775,481 INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 430526 as yet unmatched pairs. 56072 records in RAM. INFO 2026-06-08 08:39:53 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:4,507,835 INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 424851 as yet unmatched pairs. 50384 records in RAM. INFO 2026-06-08 08:39:55 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:10,944,717 INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 422099 as yet unmatched pairs. 47627 records in RAM. INFO 2026-06-08 08:39:56 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:14,882,657 INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 420274 as yet unmatched pairs. 45796 records in RAM. INFO 2026-06-08 08:39:58 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:15,763,798 INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 418253 as yet unmatched pairs. 43771 records in RAM. INFO 2026-06-08 08:39:59 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr16:18,346,033 INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 417113 as yet unmatched pairs. 42624 records in RAM. INFO 2026-06-08 08:40:01 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:19,463,349 INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 415473 as yet unmatched pairs. 40982 records in RAM. INFO 2026-06-08 08:40:02 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,000 INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 413939 as yet unmatched pairs. 39447 records in RAM. INFO 2026-06-08 08:40:04 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,341 INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 413003 as yet unmatched pairs. 38504 records in RAM. INFO 2026-06-08 08:40:05 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr16:28,400,902 INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 410853 as yet unmatched pairs. 36337 records in RAM. INFO 2026-06-08 08:40:07 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr16:29,384,010 INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 408997 as yet unmatched pairs. 34471 records in RAM. INFO 2026-06-08 08:40:08 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:29,906,952 INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 406942 as yet unmatched pairs. 32415 records in RAM. INFO 2026-06-08 08:40:10 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr16:30,358,396 INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 405010 as yet unmatched pairs. 30480 records in RAM. INFO 2026-06-08 08:40:12 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 2s. Last read position: chr16:31,091,215 INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 403932 as yet unmatched pairs. 29392 records in RAM. INFO 2026-06-08 08:40:15 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr16:46,809,675 INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 399631 as yet unmatched pairs. 25088 records in RAM. INFO 2026-06-08 08:40:16 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr16:55,329,118 INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 397464 as yet unmatched pairs. 22904 records in RAM. INFO 2026-06-08 08:40:18 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr16:57,079,228 INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 394644 as yet unmatched pairs. 20081 records in RAM. INFO 2026-06-08 08:40:20 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr16:64,991,831 INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 394255 as yet unmatched pairs. 19686 records in RAM. INFO 2026-06-08 08:40:22 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr16:67,666,381 INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 389160 as yet unmatched pairs. 14580 records in RAM. INFO 2026-06-08 08:40:23 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr16:69,692,959 INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 386806 as yet unmatched pairs. 12225 records in RAM. INFO 2026-06-08 08:40:25 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr16:72,028,904 INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 384144 as yet unmatched pairs. 9555 records in RAM. INFO 2026-06-08 08:40:26 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:75,568,109 INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 383351 as yet unmatched pairs. 8756 records in RAM. INFO 2026-06-08 08:40:28 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr16:85,806,723 INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 380278 as yet unmatched pairs. 5668 records in RAM. INFO 2026-06-08 08:40:30 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr16:89,283,001 INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 376441 as yet unmatched pairs. 1820 records in RAM. INFO 2026-06-08 08:40:33 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr17:1,345,449 INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 380392 as yet unmatched pairs. 125883 records in RAM. INFO 2026-06-08 08:40:34 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:1,680,726 INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 371829 as yet unmatched pairs. 117319 records in RAM. INFO 2026-06-08 08:40:36 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr17:4,051,024 INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 368557 as yet unmatched pairs. 114040 records in RAM. INFO 2026-06-08 08:40:38 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr17:5,139,347 INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 365746 as yet unmatched pairs. 111227 records in RAM. INFO 2026-06-08 08:40:40 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:7,341,996 INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 363362 as yet unmatched pairs. 108839 records in RAM. INFO 2026-06-08 08:40:42 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 2s. Last read position: chr17:7,579,905 INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 362214 as yet unmatched pairs. 107682 records in RAM. INFO 2026-06-08 08:40:45 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 2s. Last read position: chr17:8,143,720 INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 359388 as yet unmatched pairs. 104855 records in RAM. INFO 2026-06-08 08:40:47 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr17:13,002,320 INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 356106 as yet unmatched pairs. 101567 records in RAM. INFO 2026-06-08 08:40:48 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr17:17,177,328 INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 353913 as yet unmatched pairs. 99371 records in RAM. INFO 2026-06-08 08:41:45 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 56s. Last read position: chr17:18,671,409 INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 351360 as yet unmatched pairs. 96815 records in RAM. INFO 2026-06-08 08:42:56 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 70s. Last read position: chr17:28,554,253 INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 348378 as yet unmatched pairs. 93829 records in RAM. INFO 2026-06-08 08:42:58 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:29,575,834 INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 346001 as yet unmatched pairs. 91448 records in RAM. INFO 2026-06-08 08:43:00 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr17:32,362,957 INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 344354 as yet unmatched pairs. 89796 records in RAM. INFO 2026-06-08 08:43:01 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:36,064,283 INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 341624 as yet unmatched pairs. 87061 records in RAM. INFO 2026-06-08 08:43:03 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:38,755,944 INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 339214 as yet unmatched pairs. 84648 records in RAM. INFO 2026-06-08 08:43:05 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:39,707,003 INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 338144 as yet unmatched pairs. 83575 records in RAM. INFO 2026-06-08 08:43:07 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 2s. Last read position: chr17:40,167,497 INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 334008 as yet unmatched pairs. 79436 records in RAM. INFO 2026-06-08 08:43:08 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:42,119,544 INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 331281 as yet unmatched pairs. 76701 records in RAM. INFO 2026-06-08 08:43:10 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:42,874,306 INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 328533 as yet unmatched pairs. 73951 records in RAM. INFO 2026-06-08 08:43:12 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:44,398,236 INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 326069 as yet unmatched pairs. 71480 records in RAM. INFO 2026-06-08 08:43:14 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:47,531,389 INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 324404 as yet unmatched pairs. 69809 records in RAM. INFO 2026-06-08 08:43:16 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,139,514 INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 321764 as yet unmatched pairs. 67165 records in RAM. INFO 2026-06-08 08:43:17 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,713 INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 333456 as yet unmatched pairs. 78852 records in RAM. INFO 2026-06-08 08:43:19 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,881 INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 350760 as yet unmatched pairs. 96151 records in RAM. INFO 2026-06-08 08:43:21 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,760 INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 337793 as yet unmatched pairs. 83184 records in RAM. INFO 2026-06-08 08:43:23 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,478 INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 336786 as yet unmatched pairs. 82172 records in RAM. INFO 2026-06-08 08:43:25 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,329 INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 360783 as yet unmatched pairs. 106160 records in RAM. INFO 2026-06-08 08:43:27 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 2s. Last read position: chr17:50,191,994 INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 335033 as yet unmatched pairs. 80405 records in RAM. INFO 2026-06-08 08:43:29 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,963 INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 347171 as yet unmatched pairs. 92536 records in RAM. INFO 2026-06-08 08:43:31 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,608 INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 328425 as yet unmatched pairs. 73784 records in RAM. INFO 2026-06-08 08:43:33 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,589 INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 322905 as yet unmatched pairs. 68258 records in RAM. INFO 2026-06-08 08:43:35 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,348 INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 340323 as yet unmatched pairs. 85669 records in RAM. INFO 2026-06-08 08:43:37 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,766 INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 328794 as yet unmatched pairs. 74131 records in RAM. INFO 2026-06-08 08:43:38 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,568 INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 301437 as yet unmatched pairs. 46772 records in RAM. INFO 2026-06-08 08:43:40 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,678,170 INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 287447 as yet unmatched pairs. 32774 records in RAM. INFO 2026-06-08 08:43:42 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr17:59,028,623 INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 284635 as yet unmatched pairs. 29952 records in RAM. INFO 2026-06-08 08:43:44 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr17:59,685,707 INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 288045 as yet unmatched pairs. 33362 records in RAM. INFO 2026-06-08 08:43:46 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr17:63,421,764 INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 279933 as yet unmatched pairs. 25235 records in RAM. INFO 2026-06-08 08:43:48 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr17:64,586,086 INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 277402 as yet unmatched pairs. 22699 records in RAM. INFO 2026-06-08 08:43:49 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr17:68,527,845 INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 279153 as yet unmatched pairs. 24448 records in RAM. INFO 2026-06-08 08:43:52 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 2s. Last read position: chr17:75,237,580 INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 272724 as yet unmatched pairs. 18009 records in RAM. INFO 2026-06-08 08:43:54 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 2s. Last read position: chr17:75,901,003 INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 270070 as yet unmatched pairs. 15351 records in RAM. INFO 2026-06-08 08:43:56 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr17:78,124,050 INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 267342 as yet unmatched pairs. 12612 records in RAM. INFO 2026-06-08 08:43:58 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr17:80,116,968 INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 264572 as yet unmatched pairs. 9835 records in RAM. INFO 2026-06-08 08:44:00 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr17:81,461,923 INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 261423 as yet unmatched pairs. 6676 records in RAM. INFO 2026-06-08 08:44:01 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr17:81,868,819 INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 259524 as yet unmatched pairs. 4771 records in RAM. INFO 2026-06-08 08:44:03 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr17:82,443,419 INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 256634 as yet unmatched pairs. 1869 records in RAM. INFO 2026-06-08 08:44:05 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr18:8,113,697 INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 253396 as yet unmatched pairs. 10373 records in RAM. INFO 2026-06-08 08:44:06 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr18:23,538,527 INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 250922 as yet unmatched pairs. 7894 records in RAM. INFO 2026-06-08 08:44:08 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr18:44,950,559 INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 248812 as yet unmatched pairs. 5772 records in RAM. INFO 2026-06-08 08:44:10 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr18:57,601,759 INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 246696 as yet unmatched pairs. 3648 records in RAM. INFO 2026-06-08 08:44:11 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr18:75,287,542 INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 243975 as yet unmatched pairs. 917 records in RAM. INFO 2026-06-08 08:44:14 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr19:868,474 INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 241421 as yet unmatched pairs. 104214 records in RAM. INFO 2026-06-08 08:44:17 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 2s. Last read position: chr19:1,241,841 INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 238233 as yet unmatched pairs. 101025 records in RAM. INFO 2026-06-08 08:44:18 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:1,912,303 INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 234997 as yet unmatched pairs. 97784 records in RAM. INFO 2026-06-08 08:44:21 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 2s. Last read position: chr19:3,054,023 INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 232510 as yet unmatched pairs. 95295 records in RAM. INFO 2026-06-08 08:44:23 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 2s. Last read position: chr19:4,431,972 INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 228976 as yet unmatched pairs. 91759 records in RAM. INFO 2026-06-08 08:44:24 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:5,786,876 INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 226192 as yet unmatched pairs. 88971 records in RAM. INFO 2026-06-08 08:44:26 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:6,702,136 INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 224486 as yet unmatched pairs. 87263 records in RAM. INFO 2026-06-08 08:44:28 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:7,630,481 INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 221209 as yet unmatched pairs. 83984 records in RAM. INFO 2026-06-08 08:44:30 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:8,938,097 INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 218252 as yet unmatched pairs. 81027 records in RAM. INFO 2026-06-08 08:44:32 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:10,284,973 INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 217252 as yet unmatched pairs. 80022 records in RAM. INFO 2026-06-08 08:44:33 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:10,994,869 INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 212921 as yet unmatched pairs. 75690 records in RAM. INFO 2026-06-08 08:44:35 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:12,464,470 INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 210420 as yet unmatched pairs. 73187 records in RAM. INFO 2026-06-08 08:44:37 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 2s. Last read position: chr19:12,952,751 INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 207901 as yet unmatched pairs. 70666 records in RAM. INFO 2026-06-08 08:44:39 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:14,397,682 INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 205379 as yet unmatched pairs. 68143 records in RAM. INFO 2026-06-08 08:44:41 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr19:15,192,414 INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 202969 as yet unmatched pairs. 65732 records in RAM. INFO 2026-06-08 08:44:43 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:16,324,940 INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 200641 as yet unmatched pairs. 63400 records in RAM. INFO 2026-06-08 08:44:44 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:17,728,059 INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 196389 as yet unmatched pairs. 59145 records in RAM. INFO 2026-06-08 08:44:46 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:18,539,688 INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 193600 as yet unmatched pairs. 56356 records in RAM. INFO 2026-06-08 08:44:48 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:19,642,009 INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 190803 as yet unmatched pairs. 53558 records in RAM. INFO 2026-06-08 08:44:49 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:35,000,416 INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 188114 as yet unmatched pairs. 50863 records in RAM. INFO 2026-06-08 08:44:51 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:36,114,227 INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 185111 as yet unmatched pairs. 47859 records in RAM. INFO 2026-06-08 08:44:53 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr19:38,721,614 INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 182273 as yet unmatched pairs. 45015 records in RAM. INFO 2026-06-08 08:44:54 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,168 INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 181605 as yet unmatched pairs. 44344 records in RAM. INFO 2026-06-08 08:44:56 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 2s. Last read position: chr19:39,889,558 INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 177230 as yet unmatched pairs. 39963 records in RAM. INFO 2026-06-08 08:44:58 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:40,441,862 INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 174707 as yet unmatched pairs. 37440 records in RAM. INFO 2026-06-08 08:44:59 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:41,348,310 INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 171725 as yet unmatched pairs. 34457 records in RAM. INFO 2026-06-08 08:45:01 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:42,274,269 INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 170657 as yet unmatched pairs. 33382 records in RAM. INFO 2026-06-08 08:45:03 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:44,236,441 INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 166230 as yet unmatched pairs. 28954 records in RAM. INFO 2026-06-08 08:45:05 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:45,357,274 INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 163063 as yet unmatched pairs. 25781 records in RAM. INFO 2026-06-08 08:45:06 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:46,722,020 INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 160198 as yet unmatched pairs. 22913 records in RAM. INFO 2026-06-08 08:45:08 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr19:48,330,382 INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 157585 as yet unmatched pairs. 20299 records in RAM. INFO 2026-06-08 08:45:10 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:49,108,184 INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 155223 as yet unmatched pairs. 17933 records in RAM. INFO 2026-06-08 08:45:12 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:49,625,460 INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 152477 as yet unmatched pairs. 15182 records in RAM. INFO 2026-06-08 08:45:14 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 2s. Last read position: chr19:50,358,634 INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 154472 as yet unmatched pairs. 17175 records in RAM. INFO 2026-06-08 08:45:16 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:52,212,961 INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 147361 as yet unmatched pairs. 10061 records in RAM. INFO 2026-06-08 08:45:17 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:54,454,440 INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 144425 as yet unmatched pairs. 7120 records in RAM. INFO 2026-06-08 08:45:19 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr19:55,622,600 INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 141011 as yet unmatched pairs. 3701 records in RAM. INFO 2026-06-08 08:45:21 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 2s. Last read position: chr19:58,393,037 INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 140036 as yet unmatched pairs. 2721 records in RAM. INFO 2026-06-08 08:45:23 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr20:2,836,215 INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 135810 as yet unmatched pairs. 31336 records in RAM. INFO 2026-06-08 08:45:25 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr20:6,778,832 INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 132795 as yet unmatched pairs. 28320 records in RAM. INFO 2026-06-08 08:45:26 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr20:20,026,811 INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 130852 as yet unmatched pairs. 26373 records in RAM. INFO 2026-06-08 08:45:28 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr20:31,665,932 INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 128347 as yet unmatched pairs. 23859 records in RAM. INFO 2026-06-08 08:45:30 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 2s. Last read position: chr20:35,115,817 INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 125325 as yet unmatched pairs. 20835 records in RAM. INFO 2026-06-08 08:45:32 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr20:37,069,666 INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 122619 as yet unmatched pairs. 18121 records in RAM. INFO 2026-06-08 08:45:33 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr20:43,460,827 INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 120669 as yet unmatched pairs. 16160 records in RAM. INFO 2026-06-08 08:45:35 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr20:45,795,392 INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 117764 as yet unmatched pairs. 13249 records in RAM. INFO 2026-06-08 08:45:36 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr20:49,094,819 INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 115245 as yet unmatched pairs. 10727 records in RAM. INFO 2026-06-08 08:45:38 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr20:56,403,541 INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 112498 as yet unmatched pairs. 7975 records in RAM. INFO 2026-06-08 08:45:40 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr20:62,193,509 INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 109468 as yet unmatched pairs. 4942 records in RAM. INFO 2026-06-08 08:45:41 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr20:63,521,884 INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 106880 as yet unmatched pairs. 2352 records in RAM. INFO 2026-06-08 08:45:43 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,651 INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 104164 as yet unmatched pairs. 20086 records in RAM. INFO 2026-06-08 08:45:45 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,872 INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 102859 as yet unmatched pairs. 18776 records in RAM. INFO 2026-06-08 08:45:46 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr21:25,725,242 INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 102619 as yet unmatched pairs. 18534 records in RAM. INFO 2026-06-08 08:45:48 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr21:32,514,821 INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 98874 as yet unmatched pairs. 14789 records in RAM. INFO 2026-06-08 08:45:49 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr21:34,859,508 INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 96607 as yet unmatched pairs. 12522 records in RAM. INFO 2026-06-08 08:45:51 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr21:41,439,710 INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 93745 as yet unmatched pairs. 9660 records in RAM. INFO 2026-06-08 08:45:53 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 2s. Last read position: chr21:44,326,804 INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 91067 as yet unmatched pairs. 6977 records in RAM. INFO 2026-06-08 08:45:55 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr21:45,987,163 INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 89087 as yet unmatched pairs. 4995 records in RAM. INFO 2026-06-08 08:45:58 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 2s. Last read position: chr21:46,126,192 INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 88139 as yet unmatched pairs. 4046 records in RAM. INFO 2026-06-08 08:46:00 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 2s. Last read position: chr22:19,471,789 INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 82962 as yet unmatched pairs. 35059 records in RAM. INFO 2026-06-08 08:46:01 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr22:21,934,078 INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 80210 as yet unmatched pairs. 32307 records in RAM. INFO 2026-06-08 08:46:03 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr22:24,095,611 INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 76983 as yet unmatched pairs. 29079 records in RAM. INFO 2026-06-08 08:46:05 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr22:29,282,388 INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 76177 as yet unmatched pairs. 28268 records in RAM. INFO 2026-06-08 08:46:06 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr22:30,926,859 INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 71765 as yet unmatched pairs. 23850 records in RAM. INFO 2026-06-08 08:46:08 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr22:35,756,133 INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 69287 as yet unmatched pairs. 21368 records in RAM. INFO 2026-06-08 08:46:10 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr22:36,341,370 INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 67313 as yet unmatched pairs. 19389 records in RAM. INFO 2026-06-08 08:46:11 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr22:37,944,181 INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 63605 as yet unmatched pairs. 15678 records in RAM. INFO 2026-06-08 08:46:13 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr22:39,522,409 INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 61852 as yet unmatched pairs. 13924 records in RAM. INFO 2026-06-08 08:46:15 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr22:41,628,164 INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 60155 as yet unmatched pairs. 12226 records in RAM. INFO 2026-06-08 08:46:16 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr22:45,203,078 INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 55842 as yet unmatched pairs. 7913 records in RAM. INFO 2026-06-08 08:46:18 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr22:50,220,000 INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 52456 as yet unmatched pairs. 4526 records in RAM. INFO 2026-06-08 08:46:20 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 2s. Last read position: chr22:50,527,193 INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 49598 as yet unmatched pairs. 1666 records in RAM. INFO 2026-06-08 08:46:22 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 2s. Last read position: chrX:3,321,164 INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 46793 as yet unmatched pairs. 42262 records in RAM. INFO 2026-06-08 08:46:24 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chrX:18,530,353 INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 43963 as yet unmatched pairs. 39425 records in RAM. INFO 2026-06-08 08:46:26 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chrX:38,561,608 INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 41602 as yet unmatched pairs. 37063 records in RAM. INFO 2026-06-08 08:46:28 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 2s. Last read position: chrX:47,142,712 INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 39247 as yet unmatched pairs. 34708 records in RAM. INFO 2026-06-08 08:46:29 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chrX:49,030,422 INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 37059 as yet unmatched pairs. 32520 records in RAM. INFO 2026-06-08 08:46:32 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 2s. Last read position: chrX:53,409,257 INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 34425 as yet unmatched pairs. 29886 records in RAM. INFO 2026-06-08 08:46:33 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chrX:65,729,599 INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 33820 as yet unmatched pairs. 29280 records in RAM. INFO 2026-06-08 08:46:35 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chrX:71,297,861 INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 30513 as yet unmatched pairs. 25971 records in RAM. INFO 2026-06-08 08:46:37 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chrX:76,174,940 INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 27303 as yet unmatched pairs. 22760 records in RAM. INFO 2026-06-08 08:46:39 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chrX:80,709,427 INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 25011 as yet unmatched pairs. 20468 records in RAM. INFO 2026-06-08 08:46:40 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chrX:103,609,200 INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 23191 as yet unmatched pairs. 18648 records in RAM. INFO 2026-06-08 08:46:42 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chrX:115,718,853 INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 20680 as yet unmatched pairs. 16137 records in RAM. INFO 2026-06-08 08:46:43 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chrX:124,066,418 INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 19316 as yet unmatched pairs. 14773 records in RAM. INFO 2026-06-08 08:46:45 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chrX:136,877,991 INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 17211 as yet unmatched pairs. 12668 records in RAM. INFO 2026-06-08 08:46:47 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chrX:153,775,034 INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 13680 as yet unmatched pairs. 9135 records in RAM. INFO 2026-06-08 08:46:49 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 1s. Last read position: chrX:154,352,332 INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 13686 as yet unmatched pairs. 9140 records in RAM. INFO 2026-06-08 08:46:50 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chrX:154,366,139 INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 9437 as yet unmatched pairs. 4891 records in RAM. INFO 2026-06-08 08:46:52 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chrX:154,645,787 INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 5211 as yet unmatched pairs. 664 records in RAM. INFO 2026-06-08 08:46:53 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,121 INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 3193 as yet unmatched pairs. 985 records in RAM. INFO 2026-06-08 08:46:54 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: KI270733.1:127,749 INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 2153 as yet unmatched pairs. 2088 records in RAM. INFO 2026-06-08 08:46:56 MarkDuplicates Read 630971224 records. 0 pairs never matched. INFO 2026-06-08 08:47:45 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141424; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 08:47:45 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 08:47:48 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 08:47:48 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 08:47:59 OpticalDuplicateFinder Large duplicate set. size = 1541 INFO 2026-06-08 08:47:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,750 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1894 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,237 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1484 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,943 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1662 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,280 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1769 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,211 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1860 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,036 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1847 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,538 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1246 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,852 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1251 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,706 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1812 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,001 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1485 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,679 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1299 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,298 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1127 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,366 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1190 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,519 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1095 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,448 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1112 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,927 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1509 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,342 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1413 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,724 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1337 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,566 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1476 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,896 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1350 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,315 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1119 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,443 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 3245 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,887 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,640 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,023 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1183 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,977 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,616 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1362 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,172 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1286 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,045 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder Large duplicate set. size = 1331 INFO 2026-06-08 08:48:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,520 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1308 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,893 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1125 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,130 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1036 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,545 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1314 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,898 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1159 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,473 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1203 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,082 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1165 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,284 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1724 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,480 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1534 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,336 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1615 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,004 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 2045 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,963 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,127 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 2408 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,984 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,137 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 2172 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,404 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,624 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 2005 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,808 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,268 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 5073 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,440 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,561 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,232 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,401 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,557 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1189 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,815 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1034 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,343 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 2660 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,260 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,218 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 2113 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,908 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,688 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1006 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,762 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1243 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,239 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 3271 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,268 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,875 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,058 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1436 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,098 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1033 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,338 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1120 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,572 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 2029 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,156 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,543 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1563 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,508 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1505 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,405 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1555 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,094 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1092 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,681 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 2367 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,103 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,136 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1493 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,935 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 2447 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,754 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,548 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1115 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,673 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1041 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,524 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1261 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,729 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1522 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,493 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1955 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,964 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 3003 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,404 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,870 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,237 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1019 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,799 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1249 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,025 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder Large duplicate set. size = 1101 INFO 2026-06-08 08:48:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,645 INFO 2026-06-08 08:48:07 OpticalDuplicateFinder Large duplicate set. size = 1039 INFO 2026-06-08 08:48:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,328 INFO 2026-06-08 08:48:07 OpticalDuplicateFinder Large duplicate set. size = 1127 INFO 2026-06-08 08:48:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,622 INFO 2026-06-08 08:48:10 OpticalDuplicateFinder Large duplicate set. size = 1395 INFO 2026-06-08 08:48:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,446 INFO 2026-06-08 08:48:10 OpticalDuplicateFinder Large duplicate set. size = 1896 INFO 2026-06-08 08:48:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,612 INFO 2026-06-08 08:48:10 OpticalDuplicateFinder Large duplicate set. size = 1128 INFO 2026-06-08 08:48:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,279 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1067 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,451 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1258 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,906 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1141 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,935 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1226 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,922 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1364 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,955 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1156 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,446 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1147 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,313 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,851 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1313 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,134 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1659 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,761 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 2128 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,432 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,941 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1527 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,439 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1021 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,729 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 2968 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,303 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,404 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1241 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,039 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1481 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,620 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,803 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1641 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,430 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1111 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,365 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1529 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,780 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1255 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,751 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 2693 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,671 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,405 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1108 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,679 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1425 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,820 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1273 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,397 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1730 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,324 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1587 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,029 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1246 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,299 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 3958 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,512 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,588 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,232 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1154 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,692 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1446 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,208 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1793 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,850 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1106 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,129 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 2076 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,477 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,659 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1304 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,261 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1566 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,125 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1207 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,090 INFO 2026-06-08 08:48:11 OpticalDuplicateFinder Large duplicate set. size = 1308 INFO 2026-06-08 08:48:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,906 INFO 2026-06-08 08:48:12 OpticalDuplicateFinder Large duplicate set. size = 1018 INFO 2026-06-08 08:48:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,367 INFO 2026-06-08 08:48:25 OpticalDuplicateFinder Large duplicate set. size = 1009 INFO 2026-06-08 08:48:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,871 INFO 2026-06-08 08:48:25 OpticalDuplicateFinder Large duplicate set. size = 1090 INFO 2026-06-08 08:48:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,377 INFO 2026-06-08 08:48:43 OpticalDuplicateFinder Large duplicate set. size = 1079 INFO 2026-06-08 08:48:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,493 INFO 2026-06-08 08:48:45 OpticalDuplicateFinder Large duplicate set. size = 1464 INFO 2026-06-08 08:48:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,580 INFO 2026-06-08 08:48:45 OpticalDuplicateFinder Large duplicate set. size = 1313 INFO 2026-06-08 08:48:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,381 INFO 2026-06-08 08:48:45 OpticalDuplicateFinder Large duplicate set. size = 1201 INFO 2026-06-08 08:48:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,543 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1087 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,969 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1052 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,809 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1484 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,180 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1683 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,784 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1100 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,384 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 2411 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,890 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,625 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 3152 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,703 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,147 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,686 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1204 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,094 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1452 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,071 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1283 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,447 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1734 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,017 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1211 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,091 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1367 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,645 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1967 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,811 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 2164 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,294 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,280 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 2118 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,077 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,586 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1103 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,014 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1065 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,896 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1082 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,760 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder Large duplicate set. size = 1059 INFO 2026-06-08 08:48:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,537 INFO 2026-06-08 08:48:52 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-08 08:48:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,792 INFO 2026-06-08 08:49:14 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 08:49:14 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 08:50:12 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 08:50:13 MarkDuplicates After generateDuplicateIndexes freeMemory: 203885456; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 08:50:13 MarkDuplicates Marking 268639201 records as duplicates. INFO 2026-06-08 08:50:13 MarkDuplicates Found 12674032 optical duplicate clusters. INFO 2026-06-08 08:50:13 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 08:50:29 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:25,498,343 INFO 2026-06-08 08:50:45 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 16s. Last read position: chr1:54,695,421 INFO 2026-06-08 08:51:02 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 16s. Last read position: chr1:148,146,568 INFO 2026-06-08 08:51:18 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 16s. Last read position: chr1:155,676,714 INFO 2026-06-08 08:51:34 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:21s. Time for last 10,000,000: 16s. Last read position: chr1:186,370,970 INFO 2026-06-08 08:51:51 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:38s. Time for last 10,000,000: 16s. Last read position: chr1:229,271,312 INFO 2026-06-08 08:52:07 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:54s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:52:23 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:10s. Time for last 10,000,000: 16s. Last read position: chr2:85,665,343 INFO 2026-06-08 08:52:40 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:27s. Time for last 10,000,000: 16s. Last read position: chr2:172,427,843 INFO 2026-06-08 08:52:56 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:43s. Time for last 10,000,000: 16s. Last read position: chr2:215,381,069 INFO 2026-06-08 08:53:12 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 16s. Last read position: chr2:237,366,956 INFO 2026-06-08 08:53:33 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:20s. Time for last 10,000,000: 20s. Last read position: chr3:49,099,403 INFO 2026-06-08 08:53:49 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:36s. Time for last 10,000,000: 16s. Last read position: chr3:128,060,545 INFO 2026-06-08 08:54:06 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:53s. Time for last 10,000,000: 16s. Last read position: chr3:195,765,116 INFO 2026-06-08 08:54:22 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:09s. Time for last 10,000,000: 16s. Last read position: chr4:25,673,221 INFO 2026-06-08 08:54:38 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:25s. Time for last 10,000,000: 15s. Last read position: chr4:99,061,180 INFO 2026-06-08 08:54:54 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:41s. Time for last 10,000,000: 16s. Last read position: chr5:14,461,299 INFO 2026-06-08 08:55:11 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:58s. Time for last 10,000,000: 16s. Last read position: chr5:96,747,380 INFO 2026-06-08 08:55:27 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:14s. Time for last 10,000,000: 16s. Last read position: chr5:150,135,651 INFO 2026-06-08 08:55:44 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:31s. Time for last 10,000,000: 16s. Last read position: chr5:171,392,760 INFO 2026-06-08 08:56:00 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:47s. Time for last 10,000,000: 16s. Last read position: chr6:26,123,536 INFO 2026-06-08 08:56:16 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:03s. Time for last 10,000,000: 15s. Last read position: chr6:34,288,804 INFO 2026-06-08 08:56:33 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:20s. Time for last 10,000,000: 17s. Last read position: chr6:136,792,188 INFO 2026-06-08 08:56:49 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:36s. Time for last 10,000,000: 16s. Last read position: chr7:30,622,448 INFO 2026-06-08 08:57:05 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:52s. Time for last 10,000,000: 16s. Last read position: chr7:94,429,370 INFO 2026-06-08 08:57:22 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:09s. Time for last 10,000,000: 16s. Last read position: chr7:149,071,706 INFO 2026-06-08 08:57:38 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:25s. Time for last 10,000,000: 16s. Last read position: chr8:43,199,431 INFO 2026-06-08 08:57:54 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:41s. Time for last 10,000,000: 16s. Last read position: chr8:143,735,871 INFO 2026-06-08 08:58:10 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:57s. Time for last 10,000,000: 15s. Last read position: chr9:92,046,021 INFO 2026-06-08 08:58:26 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:13s. Time for last 10,000,000: 15s. Last read position: chr9:133,350,265 INFO 2026-06-08 08:58:42 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:29s. Time for last 10,000,000: 15s. Last read position: chr10:60,234,742 INFO 2026-06-08 08:58:58 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:44s. Time for last 10,000,000: 15s. Last read position: chr10:102,812,668 INFO 2026-06-08 08:59:13 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:00s. Time for last 10,000,000: 15s. Last read position: chr11:1,243,168 INFO 2026-06-08 08:59:27 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:14s. Time for last 10,000,000: 14s. Last read position: chr11:1,249,490 INFO 2026-06-08 08:59:43 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:30s. Time for last 10,000,000: 15s. Last read position: chr11:33,286,882 INFO 2026-06-08 08:59:59 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:45s. Time for last 10,000,000: 15s. Last read position: chr11:64,289,101 INFO 2026-06-08 09:00:14 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:01s. Time for last 10,000,000: 15s. Last read position: chr11:86,808,246 INFO 2026-06-08 09:00:30 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:17s. Time for last 10,000,000: 15s. Last read position: chr12:6,022,826 INFO 2026-06-08 09:00:46 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:33s. Time for last 10,000,000: 15s. Last read position: chr12:49,038,249 INFO 2026-06-08 09:01:02 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:49s. Time for last 10,000,000: 16s. Last read position: chr12:57,187,411 INFO 2026-06-08 09:01:18 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:05s. Time for last 10,000,000: 16s. Last read position: chr12:116,003,044 INFO 2026-06-08 09:01:34 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:21s. Time for last 10,000,000: 16s. Last read position: chr13:75,821,379 INFO 2026-06-08 09:01:51 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:37s. Time for last 10,000,000: 16s. Last read position: chr14:55,411,659 INFO 2026-06-08 09:02:07 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:54s. Time for last 10,000,000: 16s. Last read position: chr14:103,740,512 INFO 2026-06-08 09:02:23 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:10s. Time for last 10,000,000: 16s. Last read position: chr15:61,927,175 INFO 2026-06-08 09:02:40 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:27s. Time for last 10,000,000: 16s. Last read position: chr16:671,747 INFO 2026-06-08 09:02:56 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:43s. Time for last 10,000,000: 16s. Last read position: chr16:21,837,000 INFO 2026-06-08 09:03:12 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:59s. Time for last 10,000,000: 15s. Last read position: chr16:64,991,831 INFO 2026-06-08 09:03:28 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:15s. Time for last 10,000,000: 16s. Last read position: chr17:5,139,347 INFO 2026-06-08 09:03:44 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:31s. Time for last 10,000,000: 16s. Last read position: chr17:36,064,283 INFO 2026-06-08 09:04:00 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:47s. Time for last 10,000,000: 16s. Last read position: chr17:50,187,881 INFO 2026-06-08 09:04:16 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:03s. Time for last 10,000,000: 15s. Last read position: chr17:50,199,568 INFO 2026-06-08 09:04:32 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:19s. Time for last 10,000,000: 16s. Last read position: chr17:80,116,968 INFO 2026-06-08 09:04:49 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:36s. Time for last 10,000,000: 16s. Last read position: chr19:1,241,841 INFO 2026-06-08 09:05:05 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:52s. Time for last 10,000,000: 15s. Last read position: chr19:12,464,470 INFO 2026-06-08 09:05:21 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:07s. Time for last 10,000,000: 15s. Last read position: chr19:38,721,614 INFO 2026-06-08 09:05:36 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:23s. Time for last 10,000,000: 15s. Last read position: chr19:49,108,184 INFO 2026-06-08 09:05:52 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:39s. Time for last 10,000,000: 16s. Last read position: chr20:31,665,932 INFO 2026-06-08 09:06:08 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:55s. Time for last 10,000,000: 15s. Last read position: chr21:8,399,872 INFO 2026-06-08 09:06:24 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:11s. Time for last 10,000,000: 15s. Last read position: chr22:24,095,611 INFO 2026-06-08 09:06:40 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:27s. Time for last 10,000,000: 15s. Last read position: chr22:50,527,193 INFO 2026-06-08 09:06:56 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:43s. Time for last 10,000,000: 16s. Last read position: chrX:80,709,427 INFO 2026-06-08 09:07:12 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:59s. Time for last 10,000,000: 15s. Last read position: KI270733.1:127,749 INFO 2026-06-08 09:07:21 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 09:07:21 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 09:07:21 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 09:07:21 MarkDuplicates Before output close freeMemory: 203875536; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:07:21 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 09:07:22 MarkDuplicates After output close freeMemory: 104103248; totalMemory: 134217728; maxMemory: 63585648640 [Mon Jun 08 09:07:22 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.47 minutes. Runtime.totalMemory()=134217728 ls: *cram: No such file or directory ls: *.crai: No such file or directory