Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 4379
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 4379
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:4379
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC055855.2--MEGF11 HAVANA gene 5589 40907 . + . FI_gene_label "MEGF11^ENSG00000157890.17" ; ID "AC055855.2--MEGF11^MEGF11^ENSG00000157890.17" ; exon_id "ENSE00003618900.1" ; exon_number 2 ; gene_id "AC055855.2--MEGF11^MEGF11^ENSG00000157890.17" ; gene_name MEGF11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133175.5" ; havana_transcript "OTTHUMT00000256882.2" ; hgnc_id "HGNC:29635" ; level 2 ; orig_coord_info "chr15,66123899,66123974,-" ; protein_id "ENSP00000288745.3" ; tag basic ; transcript_id "AC055855.2--MEGF11^ENST00000288745.7" ; transcript_name "MEGF11-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC055855.2--MEGF11 HAVANA mRNA 5589 40907 . + . FI_gene_label "MEGF11^ENSG00000157890.17" ; ID "AC055855.2--MEGF11^ENST00000288745.7" ; Parent "AC055855.2--MEGF11^MEGF11^ENSG00000157890.17" ; exon_id "ENSE00003618900.1" ; exon_number 2 ; gene_id "AC055855.2--MEGF11^MEGF11^ENSG00000157890.17" ; gene_name MEGF11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133175.5" ; havana_transcript "OTTHUMT00000256882.2" ; hgnc_id "HGNC:29635" ; level 2 ; orig_coord_info "chr15,66123899,66123974,-" ; protein_id "ENSP00000288745.3" ; tag basic ; transcript_id "AC055855.2--MEGF11^ENST00000288745.7" ; transcript_name "MEGF11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC079781.4--ASNS ENSEMBL gene 4220 16952 . + . FI_gene_label "ASNS^ENSG00000070669.17" ; ID "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; ccdsid "CCDS5652.1" ; exon_id "ENSE00001212450.2" ; exon_number 4 ; gene_id "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; gene_name ASNS ; gene_type protein_coding ; havana_gene "OTTHUMG00000022892.14" ; hgnc_id "HGNC:753" ; level 3 ; orig_coord_info "chr7,97868908,97869156,-" ; protein_id "ENSP00000175506.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AC079781.4--ASNS^ENST00000175506.8" ; transcript_name "ASNS-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC079781.4--ASNS ENSEMBL mRNA 4220 16952 . + . FI_gene_label "ASNS^ENSG00000070669.17" ; ID "AC079781.4--ASNS^ENST00000175506.8" ; Parent "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; ccdsid "CCDS5652.1" ; exon_id "ENSE00001212450.2" ; exon_number 4 ; gene_id "AC079781.4--ASNS^ASNS^ENSG00000070669.17" ; gene_name ASNS ; gene_type protein_coding ; havana_gene "OTTHUMG00000022892.14" ; hgnc_id "HGNC:753" ; level 3 ; orig_coord_info "chr7,97868908,97869156,-" ; protein_id "ENSP00000175506.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AC079781.4--ASNS^ENST00000175506.8" ; transcript_name "ASNS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC097532.3--GPR39 HAVANA gene 7533 14298 . + . FI_gene_label "GPR39^ENSG00000183840.7" ; ID "AC097532.3--GPR39^GPR39^ENSG00000183840.7" ; ccdsid "CCDS2170.1" ; exon_id "ENSE00001315513.3" ; exon_number 1 ; gene_id "AC097532.3--GPR39^GPR39^ENSG00000183840.7" ; gene_name GPR39 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131679.3" ; havana_transcript "OTTHUMT00000254582.2" ; hgnc_id "HGNC:4496" ; level 2 ; orig_coord_info "chr2,132417043,132417898,+" ; protein_id "ENSP00000327417.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC097532.3--GPR39^ENST00000329321.4" ; transcript_name "GPR39-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC097532.3--GPR39 HAVANA mRNA 7533 14298 . + . FI_gene_label "GPR39^ENSG00000183840.7" ; ID "AC097532.3--GPR39^ENST00000329321.4" ; Parent "AC097532.3--GPR39^GPR39^ENSG00000183840.7" ; ccdsid "CCDS2170.1" ; exon_id "ENSE00001315513.3" ; exon_number 1 ; gene_id "AC097532.3--GPR39^GPR39^ENSG00000183840.7" ; gene_name GPR39 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131679.3" ; havana_transcript "OTTHUMT00000254582.2" ; hgnc_id "HGNC:4496" ; level 2 ; orig_coord_info "chr2,132417043,132417898,+" ; protein_id "ENSP00000327417.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC097532.3--GPR39^ENST00000329321.4" ; transcript_name "GPR39-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC138035.1--SEPTIN14 HAVANA gene 11970 25517 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AC138035.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AC138035.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC138035.1--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
AC138035.1--SEPTIN14 HAVANA mRNA 11970 25517 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AC138035.1--SEPTIN14^ENST00000388975.4" ; Parent "AC138035.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AC138035.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC138035.1--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ADAMTS17--CERS3-AS1 HAVANA gene 1031 34516 . + . FI_gene_label "ADAMTS17^ENSG00000140470.15" ; ID "ADAMTS17--CERS3-AS1^ADAMTS17^ENSG00000140470.15" ; ccdsid "CCDS10383.1" ; exon_id "ENSE00003843698.1" ; exon_number 1 ; gene_id "ADAMTS17--CERS3-AS1^ADAMTS17^ENSG00000140470.15" ; gene_name ADAMTS17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149867.8" ; havana_transcript "OTTHUMT00000313595.2" ; hgnc_id "HGNC:17109" ; level 2 ; orig_coord_info "chr15,100341821,100341899,-" ; protein_id "ENSP00000268070.4" ; tag basic MANE_Select CCDS ; transcript_id "ADAMTS17--CERS3-AS1^ENST00000268070.9" ; transcript_name "ADAMTS17-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAMTS17--CERS3-AS1 HAVANA mRNA 1031 34516 . + . FI_gene_label "ADAMTS17^ENSG00000140470.15" ; ID "ADAMTS17--CERS3-AS1^ENST00000268070.9" ; Parent "ADAMTS17--CERS3-AS1^ADAMTS17^ENSG00000140470.15" ; ccdsid "CCDS10383.1" ; exon_id "ENSE00003843698.1" ; exon_number 1 ; gene_id "ADAMTS17--CERS3-AS1^ADAMTS17^ENSG00000140470.15" ; gene_name ADAMTS17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149867.8" ; havana_transcript "OTTHUMT00000313595.2" ; hgnc_id "HGNC:17109" ; level 2 ; orig_coord_info "chr15,100341821,100341899,-" ; protein_id "ENSP00000268070.4" ; tag basic MANE_Select CCDS ; transcript_id "ADAMTS17--CERS3-AS1^ENST00000268070.9" ; transcript_name "ADAMTS17-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADAMTS17--SPATA41 HAVANA gene 1031 34516 . + . FI_gene_label "ADAMTS17^ENSG00000140470.15" ; ID "ADAMTS17--SPATA41^ADAMTS17^ENSG00000140470.15" ; ccdsid "CCDS10383.1" ; exon_id "ENSE00003843698.1" ; exon_number 1 ; gene_id "ADAMTS17--SPATA41^ADAMTS17^ENSG00000140470.15" ; gene_name ADAMTS17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149867.8" ; havana_transcript "OTTHUMT00000313595.2" ; hgnc_id "HGNC:17109" ; level 2 ; orig_coord_info "chr15,100341821,100341899,-" ; protein_id "ENSP00000268070.4" ; tag basic MANE_Select CCDS ; transcript_id "ADAMTS17--SPATA41^ENST00000268070.9" ; transcript_name "ADAMTS17-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAMTS17--SPATA41 HAVANA mRNA 1031 34516 . + . FI_gene_label "ADAMTS17^ENSG00000140470.15" ; ID "ADAMTS17--SPATA41^ENST00000268070.9" ; Parent "ADAMTS17--SPATA41^ADAMTS17^ENSG00000140470.15" ; ccdsid "CCDS10383.1" ; exon_id "ENSE00003843698.1" ; exon_number 1 ; gene_id "ADAMTS17--SPATA41^ADAMTS17^ENSG00000140470.15" ; gene_name ADAMTS17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149867.8" ; havana_transcript "OTTHUMT00000313595.2" ; hgnc_id "HGNC:17109" ; level 2 ; orig_coord_info "chr15,100341821,100341899,-" ; protein_id "ENSP00000268070.4" ; tag basic MANE_Select CCDS ; transcript_id "ADAMTS17--SPATA41^ENST00000268070.9" ; transcript_name "ADAMTS17-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL512590.2--CCDC180 HAVANA gene 14599 56298 . + . FI_gene_label "CCDC180^ENSG00000197816.16" ; ID "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; exon_id "ENSE00003898006.1" ; exon_number 2 ; gene_id "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; gene_name CCDC180 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167001.3" ; havana_transcript "OTTHUMT00000383515.4" ; hgnc_id "HGNC:29303" ; level 2 ; orig_coord_info "chr9,97308064,97308132,+" ; protein_id "ENSP00000434727.2" ; tag basic MANE_Select appris_principal_1 ; transcript_id "AL512590.2--CCDC180^ENST00000529487.3" ; transcript_name "CCDC180-210" ; transcript_support_level 1 ; transcript_type protein_coding
AL512590.2--CCDC180 HAVANA mRNA 14599 56298 . + . FI_gene_label "CCDC180^ENSG00000197816.16" ; ID "AL512590.2--CCDC180^ENST00000529487.3" ; Parent "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; exon_id "ENSE00003898006.1" ; exon_number 2 ; gene_id "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; gene_name CCDC180 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167001.3" ; havana_transcript "OTTHUMT00000383515.4" ; hgnc_id "HGNC:29303" ; level 2 ; orig_coord_info "chr9,97308064,97308132,+" ; protein_id "ENSP00000434727.2" ; tag basic MANE_Select appris_principal_1 ; transcript_id "AL512590.2--CCDC180^ENST00000529487.3" ; transcript_name "CCDC180-210" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EWSR1--FLI1 ENSEMBL gene 27199 43894 . + . FI_gene_label "FLI1^ENSG00000151702.17" ; ID "EWSR1--FLI1^FLI1^ENSG00000151702.17" ; ccdsid "CCDS59231.1" ; exon_id "ENSE00001369506.4" ; exon_number 3 ; gene_id "EWSR1--FLI1^FLI1^ENSG00000151702.17" ; gene_name FLI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165792.5" ; hgnc_id "HGNC:3749" ; level 3 ; orig_coord_info "chr11,128764790,128764821,+" ; protein_id "ENSP00000281428.8" ; tag basic CCDS ; transcript_id "EWSR1--FLI1^ENST00000281428.12" ; transcript_name "FLI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EWSR1--FLI1 ENSEMBL mRNA 27199 43894 . + . FI_gene_label "FLI1^ENSG00000151702.17" ; ID "EWSR1--FLI1^ENST00000281428.12" ; Parent "EWSR1--FLI1^FLI1^ENSG00000151702.17" ; ccdsid "CCDS59231.1" ; exon_id "ENSE00001369506.4" ; exon_number 3 ; gene_id "EWSR1--FLI1^FLI1^ENSG00000151702.17" ; gene_name FLI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165792.5" ; hgnc_id "HGNC:3749" ; level 3 ; orig_coord_info "chr11,128764790,128764821,+" ; protein_id "ENSP00000281428.8" ; tag basic CCDS ; transcript_id "EWSR1--FLI1^ENST00000281428.12" ; transcript_name "FLI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EWSR1--FLI1 HAVANA gene 1283 22097 . + . FI_gene_label "EWSR1^ENSG00000182944.18" ; ID "EWSR1--FLI1^EWSR1^ENSG00000182944.18" ; exon_id "ENSE00001930494.1" ; exon_number 1 ; gene_id "EWSR1--FLI1^EWSR1^ENSG00000182944.18" ; gene_name EWSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151107.9" ; havana_transcript "OTTHUMT00000321351.1" ; hgnc_id "HGNC:3508" ; level 2 ; orig_coord_info "chr22,29268337,29268349,+" ; protein_id "ENSP00000330516.7" ; tag not_organism_supported basic ; transcript_id "EWSR1--FLI1^ENST00000331029.11" ; transcript_name "EWSR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
EWSR1--FLI1 HAVANA mRNA 1283 22097 . + . FI_gene_label "EWSR1^ENSG00000182944.18" ; ID "EWSR1--FLI1^ENST00000331029.11" ; Parent "EWSR1--FLI1^EWSR1^ENSG00000182944.18" ; exon_id "ENSE00001930494.1" ; exon_number 1 ; gene_id "EWSR1--FLI1^EWSR1^ENSG00000182944.18" ; gene_name EWSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151107.9" ; havana_transcript "OTTHUMT00000321351.1" ; hgnc_id "HGNC:3508" ; level 2 ; orig_coord_info "chr22,29268337,29268349,+" ; protein_id "ENSP00000330516.7" ; tag not_organism_supported basic ; transcript_id "EWSR1--FLI1^ENST00000331029.11" ; transcript_name "EWSR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GUSB--NAIPP4 HAVANA gene 1003 11674 . + . FI_gene_label "GUSB^ENSG00000169919.17" ; ID "GUSB--NAIPP4^GUSB^ENSG00000169919.17" ; ccdsid "CCDS5530.1" ; exon_id "ENSE00001554367.1" ; exon_number 1 ; gene_id "GUSB--NAIPP4^GUSB^ENSG00000169919.17" ; gene_name GUSB ; gene_type protein_coding ; havana_gene "OTTHUMG00000023735.5" ; havana_transcript "OTTHUMT00000251637.4" ; hgnc_id "HGNC:4696" ; level 2 ; orig_coord_info "chr7,65981974,65982183,-" ; protein_id "ENSP00000302728.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GUSB--NAIPP4^ENST00000304895.9" ; transcript_name "GUSB-201" ; transcript_support_level 1 ; transcript_type protein_coding
GUSB--NAIPP4 HAVANA mRNA 1003 11674 . + . FI_gene_label "GUSB^ENSG00000169919.17" ; ID "GUSB--NAIPP4^ENST00000304895.9" ; Parent "GUSB--NAIPP4^GUSB^ENSG00000169919.17" ; ccdsid "CCDS5530.1" ; exon_id "ENSE00001554367.1" ; exon_number 1 ; gene_id "GUSB--NAIPP4^GUSB^ENSG00000169919.17" ; gene_name GUSB ; gene_type protein_coding ; havana_gene "OTTHUMG00000023735.5" ; havana_transcript "OTTHUMT00000251637.4" ; hgnc_id "HGNC:4696" ; level 2 ; orig_coord_info "chr7,65981974,65982183,-" ; protein_id "ENSP00000302728.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GUSB--NAIPP4^ENST00000304895.9" ; transcript_name "GUSB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MCM3AP--MTRNR2L12 HAVANA gene 1687 31388 . + . FI_gene_label "MCM3AP^ENSG00000160294.11" ; ID "MCM3AP--MTRNR2L12^MCM3AP^ENSG00000160294.11" ; ccdsid "CCDS13734.1" ; exon_id "ENSE00003847161.1" ; exon_number 1 ; gene_id "MCM3AP--MTRNR2L12^MCM3AP^ENSG00000160294.11" ; gene_name MCM3AP ; gene_type protein_coding ; havana_gene "OTTHUMG00000090630.5" ; havana_transcript "OTTHUMT00000504450.2" ; hgnc_id "HGNC:6946" ; level 2 ; orig_coord_info "chr21,46284068,46285286,-" ; protein_id "ENSP00000291688.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MCM3AP--MTRNR2L12^ENST00000291688.6" ; transcript_name "MCM3AP-201" ; transcript_support_level 1 ; transcript_type protein_coding
MCM3AP--MTRNR2L12 HAVANA mRNA 1687 31388 . + . FI_gene_label "MCM3AP^ENSG00000160294.11" ; ID "MCM3AP--MTRNR2L12^ENST00000291688.6" ; Parent "MCM3AP--MTRNR2L12^MCM3AP^ENSG00000160294.11" ; ccdsid "CCDS13734.1" ; exon_id "ENSE00003847161.1" ; exon_number 1 ; gene_id "MCM3AP--MTRNR2L12^MCM3AP^ENSG00000160294.11" ; gene_name MCM3AP ; gene_type protein_coding ; havana_gene "OTTHUMG00000090630.5" ; havana_transcript "OTTHUMT00000504450.2" ; hgnc_id "HGNC:6946" ; level 2 ; orig_coord_info "chr21,46284068,46285286,-" ; protein_id "ENSP00000291688.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MCM3AP--MTRNR2L12^ENST00000291688.6" ; transcript_name "MCM3AP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MCM3AP--MTRNR2L12 HAVANA gene 34389 35437 . + . FI_gene_label "MTRNR2L12^ENSG00000269028.3" ; ID "MCM3AP--MTRNR2L12^MTRNR2L12^ENSG00000269028.3" ; exon_id "ENSE00002993977.3" ; exon_number 1 ; gene_id "MCM3AP--MTRNR2L12^MTRNR2L12^ENSG00000269028.3" ; gene_name MTRNR2L12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000175726.3" ; havana_transcript "OTTHUMT00000430905.3" ; hgnc_id "HGNC:37169" ; level 2 ; orig_coord_info "chr3,96617202,96617273,-" ; protein_id "ENSP00000468991.1" ; tag not_best_in_genome_evidence basic appris_principal_1 ; transcript_id "MCM3AP--MTRNR2L12^ENST00000600213.3" ; transcript_name "MTRNR2L12-201" ; transcript_support_level NA ; transcript_type protein_coding
MCM3AP--MTRNR2L12 HAVANA mRNA 34389 35437 . + . FI_gene_label "MTRNR2L12^ENSG00000269028.3" ; ID "MCM3AP--MTRNR2L12^ENST00000600213.3" ; Parent "MCM3AP--MTRNR2L12^MTRNR2L12^ENSG00000269028.3" ; exon_id "ENSE00002993977.3" ; exon_number 1 ; gene_id "MCM3AP--MTRNR2L12^MTRNR2L12^ENSG00000269028.3" ; gene_name MTRNR2L12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000175726.3" ; havana_transcript "OTTHUMT00000430905.3" ; hgnc_id "HGNC:37169" ; level 2 ; orig_coord_info "chr3,96617202,96617273,-" ; protein_id "ENSP00000468991.1" ; tag not_best_in_genome_evidence basic appris_principal_1 ; transcript_id "MCM3AP--MTRNR2L12^ENST00000600213.3" ; transcript_name "MTRNR2L12-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
NKX2-2--NOC4L HAVANA gene 7049 14124 . + . FI_gene_label "NOC4L^ENSG00000184967.7" ; ID "NKX2-2--NOC4L^NOC4L^ENSG00000184967.7" ; ccdsid "CCDS9277.1" ; exon_id "ENSE00001294266.3" ; exon_number 1 ; gene_id "NKX2-2--NOC4L^NOC4L^ENSG00000184967.7" ; gene_name NOC4L ; gene_type protein_coding ; havana_gene "OTTHUMG00000168260.5" ; havana_transcript "OTTHUMT00000398999.2" ; hgnc_id "HGNC:28461" ; level 2 ; orig_coord_info "chr12,132144489,132144605,+" ; protein_id "ENSP00000328854.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NKX2-2--NOC4L^ENST00000330579.6" ; transcript_name "NOC4L-201" ; transcript_support_level 1 ; transcript_type protein_coding
NKX2-2--NOC4L HAVANA mRNA 7049 14124 . + . FI_gene_label "NOC4L^ENSG00000184967.7" ; ID "NKX2-2--NOC4L^ENST00000330579.6" ; Parent "NKX2-2--NOC4L^NOC4L^ENSG00000184967.7" ; ccdsid "CCDS9277.1" ; exon_id "ENSE00001294266.3" ; exon_number 1 ; gene_id "NKX2-2--NOC4L^NOC4L^ENSG00000184967.7" ; gene_name NOC4L ; gene_type protein_coding ; havana_gene "OTTHUMG00000168260.5" ; havana_transcript "OTTHUMT00000398999.2" ; hgnc_id "HGNC:28461" ; level 2 ; orig_coord_info "chr12,132144489,132144605,+" ; protein_id "ENSP00000328854.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NKX2-2--NOC4L^ENST00000330579.6" ; transcript_name "NOC4L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NKX2-2--NOC4L HAVANA gene 1001 4048 . + . FI_gene_label "NKX2-2^ENSG00000125820.6" ; ID "NKX2-2--NOC4L^NKX2-2^ENSG00000125820.6" ; ccdsid "CCDS13145.1" ; exon_id "ENSE00001472902.5" ; exon_number 1 ; gene_id "NKX2-2--NOC4L^NKX2-2^ENSG00000125820.6" ; gene_name "NKX2-2" ; gene_type protein_coding ; havana_gene "OTTHUMG00000170524.22" ; havana_transcript "OTTHUMT00000078278.23" ; hgnc_id "HGNC:7835" ; level 2 ; orig_coord_info "chr20,21513411,21513669,-" ; protein_id "ENSP00000366347.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NKX2-2--NOC4L^ENST00000377142.5" ; transcript_name "NKX2-2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NKX2-2--NOC4L HAVANA mRNA 1001 4048 . + . FI_gene_label "NKX2-2^ENSG00000125820.6" ; ID "NKX2-2--NOC4L^ENST00000377142.5" ; Parent "NKX2-2--NOC4L^NKX2-2^ENSG00000125820.6" ; ccdsid "CCDS13145.1" ; exon_id "ENSE00001472902.5" ; exon_number 1 ; gene_id "NKX2-2--NOC4L^NKX2-2^ENSG00000125820.6" ; gene_name "NKX2-2" ; gene_type protein_coding ; havana_gene "OTTHUMG00000170524.22" ; havana_transcript "OTTHUMT00000078278.23" ; hgnc_id "HGNC:7835" ; level 2 ; orig_coord_info "chr20,21513411,21513669,-" ; protein_id "ENSP00000366347.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NKX2-2--NOC4L^ENST00000377142.5" ; transcript_name "NKX2-2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHA13 HAVANA gene 8595 17035 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHA13 HAVANA mRNA 8595 17035 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA3--PCDHA13^ENST00000289272.3" ; Parent "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHA13 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHA13^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHA13 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHA13^ENST00000532566.3" ; Parent "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHA13^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC1 HAVANA gene 8595 18610 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHAC1 HAVANA mRNA 8595 18610 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA3--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC1 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC1^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHAC1 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC1^ENST00000532566.3" ; Parent "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC1^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC2 HAVANA gene 8601 19336 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHAC2 HAVANA mRNA 8601 19336 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA3--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC2 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC2^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHAC2 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC2^ENST00000532566.3" ; Parent "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC2^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA10 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA10^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA10^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA10^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGA10 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA10^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGA10^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA10^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA10^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA10 HAVANA gene 8259 17712 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA1--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGA10 HAVANA mRNA 8259 17712 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA1--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA1--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA11 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA11^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA11^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA11^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGA11 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA11^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGA11^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA11^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA11^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA11 HAVANA gene 8074 16879 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA1--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGA11 HAVANA mRNA 8074 16879 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA1--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA1--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA12 HAVANA gene 8070 15962 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA1--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGA12 HAVANA mRNA 8070 15962 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA1--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA1--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA12 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA12^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA12^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA12^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGA12 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA12^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGA12^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA12^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA12^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA8 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA8^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA8^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA8^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGA8 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA8^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGA8^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA8^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA8^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA8 HAVANA gene 10546 19726 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA1--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGA8 HAVANA mRNA 10546 19726 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA1--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA1--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA9 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA9^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA9^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA9^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGA9 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA9^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGA9^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA9^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA9^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA9 HAVANA gene 8091 15818 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA1--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGA9 HAVANA mRNA 8091 15818 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA1--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA1--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGB6 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGB6^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB6^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGB6^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGB6 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGB6^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGB6^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB6^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGB6^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGB6 HAVANA gene 8252 17851 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA1--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGB6 HAVANA mRNA 8252 17851 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA1--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA1--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGB7 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGB7^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB7^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGB7^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGB7 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGB7^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGB7^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB7^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGB7^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGB7 HAVANA gene 8102 16031 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA1--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGB7 HAVANA mRNA 8102 16031 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA1--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA1--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGC3 HAVANA gene 8089 18275 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA1--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGC3 HAVANA mRNA 8089 18275 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA1--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA1--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGC3 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGC3^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC3^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGC3^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGC3 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGC3^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGC3^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC3^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGC3^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGC4 HAVANA gene 8247 16043 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA1--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGC4 HAVANA mRNA 8247 16043 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA1--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA1--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGC4 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGC4^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC4^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGC4^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGC4 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGC4^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGC4^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC4^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGC4^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGC5 HAVANA gene 8070 16095 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA1--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGC5 HAVANA mRNA 8070 16095 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA1--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA1--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGC5 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGC5^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC5^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGC5^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGC5 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGC5^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGC5^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC5^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGC5^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA10 HAVANA gene 6885 16338 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA10 HAVANA mRNA 6885 16338 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA3--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA10 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA10 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA10^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA11 HAVANA gene 6700 15505 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA11 HAVANA mRNA 6700 15505 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA3--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA11 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA11 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA11^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA12 HAVANA gene 6696 14588 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA12 HAVANA mRNA 6696 14588 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA3--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA12 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA12 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA12^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA8 HAVANA gene 9172 18352 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA8 HAVANA mRNA 9172 18352 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA3--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA8 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA8 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA8^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA9 HAVANA gene 6717 14444 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA9 HAVANA mRNA 6717 14444 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA3--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA9 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA9 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA9^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB6 HAVANA gene 6878 16477 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGB6 HAVANA mRNA 6878 16477 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA3--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB6 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGB6 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB6^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB7 HAVANA gene 6728 14657 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGB7 HAVANA mRNA 6728 14657 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA3--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB7 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGB7 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB7^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC3 HAVANA gene 6715 16901 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC3 HAVANA mRNA 6715 16901 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA3--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC3 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC3 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC3^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC4 HAVANA gene 6873 14669 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC4 HAVANA mRNA 6873 14669 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA3--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC4 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC4 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC4^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC5 HAVANA gene 6696 14721 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC5 HAVANA mRNA 6696 14721 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA3--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC5 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC5 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC5^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGA10 HAVANA gene 6635 16088 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB3--PCDHGA10 HAVANA mRNA 6635 16088 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB3--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGA10 HAVANA gene 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGA10^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA10^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGA10^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB3--PCDHGA10 HAVANA mRNA 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGA10^ENST00000618934.1" ; Parent "PCDHGB3--PCDHGA10^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA10^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGA10^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGA11 HAVANA gene 6450 15255 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB3--PCDHGA11 HAVANA mRNA 6450 15255 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB3--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGA11 HAVANA gene 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGA11^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA11^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGA11^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB3--PCDHGA11 HAVANA mRNA 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGA11^ENST00000618934.1" ; Parent "PCDHGB3--PCDHGA11^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA11^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGA11^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGA12 HAVANA gene 6446 14338 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB3--PCDHGA12 HAVANA mRNA 6446 14338 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB3--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGA12 HAVANA gene 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGA12^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA12^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGA12^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB3--PCDHGA12 HAVANA mRNA 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGA12^ENST00000618934.1" ; Parent "PCDHGB3--PCDHGA12^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA12^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGA12^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGA8 HAVANA gene 8922 18102 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB3--PCDHGA8 HAVANA mRNA 8922 18102 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB3--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGA8 HAVANA gene 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGA8^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA8^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGA8^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB3--PCDHGA8 HAVANA mRNA 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGA8^ENST00000618934.1" ; Parent "PCDHGB3--PCDHGA8^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA8^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGA8^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGA9 HAVANA gene 6467 14194 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB3--PCDHGA9 HAVANA mRNA 6467 14194 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB3--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGA9 HAVANA gene 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGA9^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA9^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGA9^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB3--PCDHGA9 HAVANA mRNA 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGA9^ENST00000618934.1" ; Parent "PCDHGB3--PCDHGA9^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGA9^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGA9^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGB6 HAVANA gene 6628 16227 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB3--PCDHGB6 HAVANA mRNA 6628 16227 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB3--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGB6 HAVANA gene 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGB6^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGB6^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGB6^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB3--PCDHGB6 HAVANA mRNA 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGB6^ENST00000618934.1" ; Parent "PCDHGB3--PCDHGB6^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGB6^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGB6^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGB7 HAVANA gene 6478 14407 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB3--PCDHGB7 HAVANA mRNA 6478 14407 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB3--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGB7 HAVANA gene 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGB7^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGB7^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGB7^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB3--PCDHGB7 HAVANA mRNA 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGB7^ENST00000618934.1" ; Parent "PCDHGB3--PCDHGB7^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGB7^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGB7^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGC3 HAVANA gene 6465 16651 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB3--PCDHGC3 HAVANA mRNA 6465 16651 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB3--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGC3 HAVANA gene 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGC3^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGC3^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGC3^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB3--PCDHGC3 HAVANA mRNA 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGC3^ENST00000618934.1" ; Parent "PCDHGB3--PCDHGC3^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGC3^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGC3^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGC4 HAVANA gene 6623 14419 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB3--PCDHGC4 HAVANA mRNA 6623 14419 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB3--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGC4 HAVANA gene 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGC4^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGC4^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGC4^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB3--PCDHGC4 HAVANA mRNA 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGC4^ENST00000618934.1" ; Parent "PCDHGB3--PCDHGC4^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGC4^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGC4^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGC5 HAVANA gene 6446 14471 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB3--PCDHGC5 HAVANA mRNA 6446 14471 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB3--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB3--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB3--PCDHGC5 HAVANA gene 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGC5^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGC5^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGC5^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB3--PCDHGC5 HAVANA mRNA 1001 3445 . + . FI_gene_label "PCDHGB3^ENSG00000262209.3" ; ID "PCDHGB3--PCDHGC5^ENST00000618934.1" ; Parent "PCDHGB3--PCDHGC5^PCDHGB3^ENSG00000262209.3" ; ccdsid "CCDS75334.1" ; exon_id "ENSE00003725403.1" ; exon_number 1 ; gene_id "PCDHGB3--PCDHGC5^PCDHGB3^ENSG00000262209.3" ; gene_name PCDHGB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177471.5" ; havana_transcript "OTTHUMT00000476687.2" ; hgnc_id "HGNC:8710" ; level 2 ; orig_coord_info "chr5,141370395,141372836,+" ; protein_id "ENSP00000483339.1" ; tag basic CCDS ; transcript_id "PCDHGB3--PCDHGC5^ENST00000618934.1" ; transcript_name "PCDHGB3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^ENST00000465254.2" ; Parent "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^ENST00000465909.2" ; Parent "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAS2R14--PRR4 HAVANA gene 10349 13934 . + . FI_gene_label "PRR4^ENSG00000111215.12" ; ID "TAS2R14--PRR4^PRR4^ENSG00000111215.12" ; ccdsid "CCDS41756.1" ; exon_id "ENSE00003526535.1" ; exon_number 1 ; gene_id "TAS2R14--PRR4^PRR4^ENSG00000111215.12" ; gene_name PRR4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192575.1" ; havana_transcript "OTTHUMT00000400049.1" ; hgnc_id "HGNC:18020" ; level 2 ; orig_coord_info "chr12,10849374,10849437,-" ; protein_id "ENSP00000228811.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAS2R14--PRR4^ENST00000228811.8" ; transcript_name "PRR4-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAS2R14--PRR4 HAVANA mRNA 10349 13934 . + . FI_gene_label "PRR4^ENSG00000111215.12" ; ID "TAS2R14--PRR4^ENST00000228811.8" ; Parent "TAS2R14--PRR4^PRR4^ENSG00000111215.12" ; ccdsid "CCDS41756.1" ; exon_id "ENSE00003526535.1" ; exon_number 1 ; gene_id "TAS2R14--PRR4^PRR4^ENSG00000111215.12" ; gene_name PRR4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192575.1" ; havana_transcript "OTTHUMT00000400049.1" ; hgnc_id "HGNC:18020" ; level 2 ; orig_coord_info "chr12,10849374,10849437,-" ; protein_id "ENSP00000228811.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAS2R14--PRR4^ENST00000228811.8" ; transcript_name "PRR4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAS2R14--PRR4 HAVANA gene 5493 7346 . + . FI_gene_label "TAS2R14^ENSG00000212127.6" ; ID "TAS2R14--PRR4^TAS2R14^ENSG00000212127.6" ; ccdsid "CCDS8637.1" ; exon_id "ENSE00002238942.2" ; exon_number 1 ; gene_id "TAS2R14--PRR4^TAS2R14^ENSG00000212127.6" ; gene_name TAS2R14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162720.5" ; havana_transcript "OTTHUMT00000370194.5" ; hgnc_id "HGNC:14920" ; level 2 ; orig_coord_info "chr12,10938257,10939207,-" ; protein_id "ENSP00000441949.1" ; tag upstream_ATG basic appris_principal_1 CCDS ; transcript_id "TAS2R14--PRR4^ENST00000537503.2" ; transcript_name "TAS2R14-202" ; transcript_support_level NA ; transcript_type protein_coding
TAS2R14--PRR4 HAVANA mRNA 5493 7346 . + . FI_gene_label "TAS2R14^ENSG00000212127.6" ; ID "TAS2R14--PRR4^ENST00000537503.2" ; Parent "TAS2R14--PRR4^TAS2R14^ENSG00000212127.6" ; ccdsid "CCDS8637.1" ; exon_id "ENSE00002238942.2" ; exon_number 1 ; gene_id "TAS2R14--PRR4^TAS2R14^ENSG00000212127.6" ; gene_name TAS2R14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162720.5" ; havana_transcript "OTTHUMT00000370194.5" ; hgnc_id "HGNC:14920" ; level 2 ; orig_coord_info "chr12,10938257,10939207,-" ; protein_id "ENSP00000441949.1" ; tag upstream_ATG basic appris_principal_1 CCDS ; transcript_id "TAS2R14--PRR4^ENST00000537503.2" ; transcript_name "TAS2R14-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^ENST00000427199.3" ; Parent "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^ENST00000456936.4" ; Parent "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM244--ARHGAP18 HAVANA gene 1233 5821 . + . FI_gene_label "TMEM244^ENSG00000203756.8" ; ID "TMEM244--ARHGAP18^TMEM244^ENSG00000203756.8" ; ccdsid "CCDS34536.1" ; exon_id "ENSE00001446415.2" ; exon_number 1 ; gene_id "TMEM244--ARHGAP18^TMEM244^ENSG00000203756.8" ; gene_name TMEM244 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015553.2" ; havana_transcript "OTTHUMT00000042194.2" ; hgnc_id "HGNC:21571" ; level 2 ; orig_coord_info "chr6,129861156,129861188,-" ; protein_id "ENSP00000357125.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM244--ARHGAP18^ENST00000368143.6" ; transcript_name "TMEM244-201" ; transcript_support_level 2 ; transcript_type protein_coding
TMEM244--ARHGAP18 HAVANA mRNA 1233 5821 . + . FI_gene_label "TMEM244^ENSG00000203756.8" ; ID "TMEM244--ARHGAP18^ENST00000368143.6" ; Parent "TMEM244--ARHGAP18^TMEM244^ENSG00000203756.8" ; ccdsid "CCDS34536.1" ; exon_id "ENSE00001446415.2" ; exon_number 1 ; gene_id "TMEM244--ARHGAP18^TMEM244^ENSG00000203756.8" ; gene_name TMEM244 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015553.2" ; havana_transcript "OTTHUMT00000042194.2" ; hgnc_id "HGNC:21571" ; level 2 ; orig_coord_info "chr6,129861156,129861188,-" ; protein_id "ENSP00000357125.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM244--ARHGAP18^ENST00000368143.6" ; transcript_name "TMEM244-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TMEM244--ARHGAP18 HAVANA gene 8822 28667 . + . FI_gene_label "ARHGAP18^ENSG00000146376.11" ; ID "TMEM244--ARHGAP18^ARHGAP18^ENSG00000146376.11" ; ccdsid "CCDS34535.1" ; exon_id "ENSE00001244184.7" ; exon_number 1 ; gene_id "TMEM244--ARHGAP18^ARHGAP18^ENSG00000146376.11" ; gene_name ARHGAP18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015547.3" ; havana_transcript "OTTHUMT00000042185.3" ; hgnc_id "HGNC:21035" ; level 2 ; orig_coord_info "chr6,129710024,129710136,-" ; protein_id "ENSP00000357131.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM244--ARHGAP18^ENST00000368149.3" ; transcript_name "ARHGAP18-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM244--ARHGAP18 HAVANA mRNA 8822 28667 . + . FI_gene_label "ARHGAP18^ENSG00000146376.11" ; ID "TMEM244--ARHGAP18^ENST00000368149.3" ; Parent "TMEM244--ARHGAP18^ARHGAP18^ENSG00000146376.11" ; ccdsid "CCDS34535.1" ; exon_id "ENSE00001244184.7" ; exon_number 1 ; gene_id "TMEM244--ARHGAP18^ARHGAP18^ENSG00000146376.11" ; gene_name ARHGAP18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015547.3" ; havana_transcript "OTTHUMT00000042185.3" ; hgnc_id "HGNC:21035" ; level 2 ; orig_coord_info "chr6,129710024,129710136,-" ; protein_id "ENSP00000357131.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM244--ARHGAP18^ENST00000368149.3" ; transcript_name "ARHGAP18-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIM59--IFT80 HAVANA gene 2416 9154 . + . FI_gene_label "TRIM59^ENSG00000213186.8" ; ID "TRIM59--IFT80^TRIM59^ENSG00000213186.8" ; ccdsid "CCDS3190.1" ; exon_id "ENSE00001192323.6" ; exon_number 3 ; gene_id "TRIM59--IFT80^TRIM59^ENSG00000213186.8" ; gene_name TRIM59 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159034.4" ; havana_transcript "OTTHUMT00000352963.2" ; hgnc_id "HGNC:30834" ; level 2 ; orig_coord_info "chr3,160437975,160439183,-" ; protein_id "ENSP00000311219.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRIM59--IFT80^ENST00000309784.9" ; transcript_name "TRIM59-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIM59--IFT80 HAVANA mRNA 2416 9154 . + . FI_gene_label "TRIM59^ENSG00000213186.8" ; ID "TRIM59--IFT80^ENST00000309784.9" ; Parent "TRIM59--IFT80^TRIM59^ENSG00000213186.8" ; ccdsid "CCDS3190.1" ; exon_id "ENSE00001192323.6" ; exon_number 3 ; gene_id "TRIM59--IFT80^TRIM59^ENSG00000213186.8" ; gene_name TRIM59 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159034.4" ; havana_transcript "OTTHUMT00000352963.2" ; hgnc_id "HGNC:30834" ; level 2 ; orig_coord_info "chr3,160437975,160439183,-" ; protein_id "ENSP00000311219.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRIM59--IFT80^ENST00000309784.9" ; transcript_name "TRIM59-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIM59--IFT80 HAVANA gene 15868 46756 . + . FI_gene_label "IFT80^ENSG00000068885.15" ; ID "TRIM59--IFT80^IFT80^ENSG00000068885.15" ; ccdsid "CCDS3188.1" ; exon_id "ENSE00003486065.1" ; exon_number 2 ; gene_id "TRIM59--IFT80^IFT80^ENSG00000068885.15" ; gene_name IFT80 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158953.9" ; havana_transcript "OTTHUMT00000352651.3" ; hgnc_id "HGNC:29262" ; level 2 ; orig_coord_info "chr3,160384564,160384600,-" ; protein_id "ENSP00000312778.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRIM59--IFT80^ENST00000326448.12" ; transcript_name "IFT80-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIM59--IFT80 HAVANA mRNA 15868 46756 . + . FI_gene_label "IFT80^ENSG00000068885.15" ; ID "TRIM59--IFT80^ENST00000326448.12" ; Parent "TRIM59--IFT80^IFT80^ENSG00000068885.15" ; ccdsid "CCDS3188.1" ; exon_id "ENSE00003486065.1" ; exon_number 2 ; gene_id "TRIM59--IFT80^IFT80^ENSG00000068885.15" ; gene_name IFT80 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158953.9" ; havana_transcript "OTTHUMT00000352651.3" ; hgnc_id "HGNC:29262" ; level 2 ; orig_coord_info "chr3,160384564,160384600,-" ; protein_id "ENSP00000312778.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRIM59--IFT80^ENST00000326448.12" ; transcript_name "IFT80-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UBE2Q2P2--GOLGA6L10 HAVANA gene 15684 24464 . + . FI_gene_label "GOLGA6L10^ENSG00000278662.5" ; ID "UBE2Q2P2--GOLGA6L10^GOLGA6L10^ENSG00000278662.5" ; ccdsid "CCDS45325.2" ; exon_id "ENSE00002255247.2" ; exon_number 1 ; gene_id "UBE2Q2P2--GOLGA6L10^GOLGA6L10^ENSG00000278662.5" ; gene_name GOLGA6L10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172580.4" ; havana_transcript "OTTHUMT00000419277.4" ; hgnc_id "HGNC:37228" ; level 2 ; orig_coord_info "chr15,82349292,82349375,-" ; protein_id "ENSP00000479362.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UBE2Q2P2--GOLGA6L10^ENST00000610657.2" ; transcript_name "GOLGA6L10-207" ; transcript_support_level 2 ; transcript_type protein_coding
UBE2Q2P2--GOLGA6L10 HAVANA mRNA 15684 24464 . + . FI_gene_label "GOLGA6L10^ENSG00000278662.5" ; ID "UBE2Q2P2--GOLGA6L10^ENST00000610657.2" ; Parent "UBE2Q2P2--GOLGA6L10^GOLGA6L10^ENSG00000278662.5" ; ccdsid "CCDS45325.2" ; exon_id "ENSE00002255247.2" ; exon_number 1 ; gene_id "UBE2Q2P2--GOLGA6L10^GOLGA6L10^ENSG00000278662.5" ; gene_name GOLGA6L10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172580.4" ; havana_transcript "OTTHUMT00000419277.4" ; hgnc_id "HGNC:37228" ; level 2 ; orig_coord_info "chr15,82349292,82349375,-" ; protein_id "ENSP00000479362.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UBE2Q2P2--GOLGA6L10^ENST00000610657.2" ; transcript_name "GOLGA6L10-207" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AC055855.2--MEGF11 HAVANA gene 1001 2578 . + . FI_gene_label "AC055855.2^ENSG00000261318.1" ; ID "AC055855.2--MEGF11^AC055855.2^ENSG00000261318.1" ; exon_id "ENSE00002604818.1" ; exon_number 1 ; gene_id "AC055855.2--MEGF11^AC055855.2^ENSG00000261318.1" ; gene_name "AC055855.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172825.2" ; havana_transcript "OTTHUMT00000420715.1" ; level 2 ; orig_coord_info "chr15,66293326,66293357,-" ; tag basic ; transcript_id "AC055855.2--MEGF11^ENST00000564269.1" ; transcript_name "AC055855.2-201" ; transcript_support_level 2 ; transcript_type lncRNA
AC055855.2--MEGF11 HAVANA RNA 1001 2578 . + . FI_gene_label "AC055855.2^ENSG00000261318.1" ; ID "AC055855.2--MEGF11^ENST00000564269.1" ; Parent "AC055855.2--MEGF11^AC055855.2^ENSG00000261318.1" ; exon_id "ENSE00002604818.1" ; exon_number 1 ; gene_id "AC055855.2--MEGF11^AC055855.2^ENSG00000261318.1" ; gene_name "AC055855.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172825.2" ; havana_transcript "OTTHUMT00000420715.1" ; level 2 ; orig_coord_info "chr15,66293326,66293357,-" ; tag basic ; transcript_id "AC055855.2--MEGF11^ENST00000564269.1" ; transcript_name "AC055855.2-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC079781.4--ASNS HAVANA gene 1001 1219 . + . FI_gene_label "AC079781.4^ENSG00000284627.1" ; ID "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; exon_id "ENSE00003813582.1" ; exon_number 1 ; gene_id "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; gene_name "AC079781.4" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192224.1" ; havana_transcript "OTTHUMT00000492944.1" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,97928082,97928300,-" ; tag non_submitted_evidence pseudo_consens basic ; transcript_id "AC079781.4--ASNS^ENST00000641908.1" ; transcript_name "AC079781.4-201" ; transcript_type transcribed_unprocessed_pseudogene
AC079781.4--ASNS HAVANA RNA 1001 1219 . + . FI_gene_label "AC079781.4^ENSG00000284627.1" ; ID "AC079781.4--ASNS^ENST00000641908.1" ; Parent "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; exon_id "ENSE00003813582.1" ; exon_number 1 ; gene_id "AC079781.4--ASNS^AC079781.4^ENSG00000284627.1" ; gene_name "AC079781.4" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192224.1" ; havana_transcript "OTTHUMT00000492944.1" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr7,97928082,97928300,-" ; tag non_submitted_evidence pseudo_consens basic ; transcript_id "AC079781.4--ASNS^ENST00000641908.1" ; transcript_name "AC079781.4-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC091132.4--AC091132.1 HAVANA gene 3561 4511 . + . FI_gene_label "AC091132.4^ENSG00000267198.1" ; ID "AC091132.4--AC091132.1^AC091132.4^ENSG00000267198.1" ; exon_id "ENSE00002974385.1" ; exon_number 1 ; gene_id "AC091132.4--AC091132.1^AC091132.4^ENSG00000267198.1" ; gene_name "AC091132.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180602.1" ; havana_transcript "OTTHUMT00000452149.1" ; level 2 ; orig_coord_info "chr17,45552855,45553267,+" ; tag basic ; transcript_id "AC091132.4--AC091132.1^ENST00000585761.1" ; transcript_name "AC091132.4-205" ; transcript_support_level 4 ; transcript_type lncRNA
AC091132.4--AC091132.1 HAVANA RNA 3561 4511 . + . FI_gene_label "AC091132.4^ENSG00000267198.1" ; ID "AC091132.4--AC091132.1^ENST00000585761.1" ; Parent "AC091132.4--AC091132.1^AC091132.4^ENSG00000267198.1" ; exon_id "ENSE00002974385.1" ; exon_number 1 ; gene_id "AC091132.4--AC091132.1^AC091132.4^ENSG00000267198.1" ; gene_name "AC091132.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180602.1" ; havana_transcript "OTTHUMT00000452149.1" ; level 2 ; orig_coord_info "chr17,45552855,45553267,+" ; tag basic ; transcript_id "AC091132.4--AC091132.1^ENST00000585761.1" ; transcript_name "AC091132.4-205" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC091132.4--AC091132.1 HAVANA gene 11023 11770 . + . FI_gene_label "AC091132.1^ENSG00000131484.4" ; ID "AC091132.4--AC091132.1^AC091132.1^ENSG00000131484.4" ; exon_id "ENSE00002831453.1" ; exon_number 1 ; gene_id "AC091132.4--AC091132.1^AC091132.1^ENSG00000131484.4" ; gene_name "AC091132.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180601.1" ; havana_transcript "OTTHUMT00000452144.1" ; level 2 ; orig_coord_info "chr17,45533963,45534303,+" ; tag basic ; transcript_id "AC091132.4--AC091132.1^ENST00000588189.1" ; transcript_name "AC091132.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
AC091132.4--AC091132.1 HAVANA RNA 11023 11770 . + . FI_gene_label "AC091132.1^ENSG00000131484.4" ; ID "AC091132.4--AC091132.1^ENST00000588189.1" ; Parent "AC091132.4--AC091132.1^AC091132.1^ENSG00000131484.4" ; exon_id "ENSE00002831453.1" ; exon_number 1 ; gene_id "AC091132.4--AC091132.1^AC091132.1^ENSG00000131484.4" ; gene_name "AC091132.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180601.1" ; havana_transcript "OTTHUMT00000452144.1" ; level 2 ; orig_coord_info "chr17,45533963,45534303,+" ; tag basic ; transcript_id "AC091132.4--AC091132.1^ENST00000588189.1" ; transcript_name "AC091132.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC097532.3--GPR39 HAVANA gene 2044 3874 . + . FI_gene_label "AC097532.3^ENSG00000286833.1" ; ID "AC097532.3--GPR39^AC097532.3^ENSG00000286833.1" ; exon_id "ENSE00003862746.1" ; exon_number 1 ; gene_id "AC097532.3--GPR39^AC097532.3^ENSG00000286833.1" ; gene_name "AC097532.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195814.1" ; havana_transcript "OTTHUMT00000528889.1" ; level 2 ; orig_coord_info "chr2,132357640,132357802,+" ; tag TAGENE ; transcript_id "AC097532.3--GPR39^ENST00000657012.1" ; transcript_name "AC097532.3-202" ; transcript_type lncRNA
AC097532.3--GPR39 HAVANA RNA 2044 3874 . + . FI_gene_label "AC097532.3^ENSG00000286833.1" ; ID "AC097532.3--GPR39^ENST00000657012.1" ; Parent "AC097532.3--GPR39^AC097532.3^ENSG00000286833.1" ; exon_id "ENSE00003862746.1" ; exon_number 1 ; gene_id "AC097532.3--GPR39^AC097532.3^ENSG00000286833.1" ; gene_name "AC097532.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195814.1" ; havana_transcript "OTTHUMT00000528889.1" ; level 2 ; orig_coord_info "chr2,132357640,132357802,+" ; tag TAGENE ; transcript_id "AC097532.3--GPR39^ENST00000657012.1" ; transcript_name "AC097532.3-202" ; transcript_type lncRNA
L1 and L2 created:
AC138035.1--SEPTIN14 HAVANA gene 1001 8411 . + . FI_gene_label "AC138035.1^ENSG00000238035.8" ; ID "AC138035.1--SEPTIN14^AC138035.1^ENSG00000238035.8" ; exon_id "ENSE00003471589.1" ; exon_number 1 ; gene_id "AC138035.1--SEPTIN14^AC138035.1^ENSG00000238035.8" ; gene_name "AC138035.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000184458.1" ; havana_transcript "OTTHUMT00000468768.1" ; level 2 ; orig_coord_info "chr5,181306502,181306652,+" ; tag non_canonical_TEC not_best_in_genome_evidence basic ; transcript_id "AC138035.1--SEPTIN14^ENST00000499986.8" ; transcript_name "AC138035.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
AC138035.1--SEPTIN14 HAVANA RNA 1001 8411 . + . FI_gene_label "AC138035.1^ENSG00000238035.8" ; ID "AC138035.1--SEPTIN14^ENST00000499986.8" ; Parent "AC138035.1--SEPTIN14^AC138035.1^ENSG00000238035.8" ; exon_id "ENSE00003471589.1" ; exon_number 1 ; gene_id "AC138035.1--SEPTIN14^AC138035.1^ENSG00000238035.8" ; gene_name "AC138035.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000184458.1" ; havana_transcript "OTTHUMT00000468768.1" ; level 2 ; orig_coord_info "chr5,181306502,181306652,+" ; tag non_canonical_TEC not_best_in_genome_evidence basic ; transcript_id "AC138035.1--SEPTIN14^ENST00000499986.8" ; transcript_name "AC138035.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
ADAMTS17--CERS3-AS1 HAVANA gene 41570 45070 . + . FI_gene_label "CERS3-AS1^ENSG00000259430.2" ; ID "ADAMTS17--CERS3-AS1^CERS3-AS1^ENSG00000259430.2" ; exon_id "ENSE00002564797.1" ; exon_number 1 ; gene_id "ADAMTS17--CERS3-AS1^CERS3-AS1^ENSG00000259430.2" ; gene_name "CERS3-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172308.2" ; havana_transcript "OTTHUMT00000417772.1" ; hgnc_id "HGNC:51431" ; level 2 ; orig_coord_info "chr15,100399875,100399925,+" ; tag basic ; transcript_id "ADAMTS17--CERS3-AS1^ENST00000560643.1" ; transcript_name "CERS3-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
ADAMTS17--CERS3-AS1 HAVANA RNA 41570 45070 . + . FI_gene_label "CERS3-AS1^ENSG00000259430.2" ; ID "ADAMTS17--CERS3-AS1^ENST00000560643.1" ; Parent "ADAMTS17--CERS3-AS1^CERS3-AS1^ENSG00000259430.2" ; exon_id "ENSE00002564797.1" ; exon_number 1 ; gene_id "ADAMTS17--CERS3-AS1^CERS3-AS1^ENSG00000259430.2" ; gene_name "CERS3-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172308.2" ; havana_transcript "OTTHUMT00000417772.1" ; hgnc_id "HGNC:51431" ; level 2 ; orig_coord_info "chr15,100399875,100399925,+" ; tag basic ; transcript_id "ADAMTS17--CERS3-AS1^ENST00000560643.1" ; transcript_name "CERS3-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
ADAMTS17--SPATA41 HAVANA gene 38854 43785 . + . FI_gene_label "SPATA41^ENSG00000189419.8" ; ID "ADAMTS17--SPATA41^SPATA41^ENSG00000189419.8" ; exon_id "ENSE00003463877.1" ; exon_number 1 ; gene_id "ADAMTS17--SPATA41^SPATA41^ENSG00000189419.8" ; gene_name SPATA41 ; gene_type lncRNA ; havana_gene "OTTHUMG00000172281.4" ; havana_transcript "OTTHUMT00000417647.1" ; hgnc_id "HGNC:48613" ; level 2 ; orig_coord_info "chr15,100349308,100349388,-" ; transcript_id "ADAMTS17--SPATA41^ENST00000558307.1" ; transcript_name "SPATA41-201" ; transcript_support_level 5 ; transcript_type lncRNA
ADAMTS17--SPATA41 HAVANA RNA 38854 43785 . + . FI_gene_label "SPATA41^ENSG00000189419.8" ; ID "ADAMTS17--SPATA41^ENST00000558307.1" ; Parent "ADAMTS17--SPATA41^SPATA41^ENSG00000189419.8" ; exon_id "ENSE00003463877.1" ; exon_number 1 ; gene_id "ADAMTS17--SPATA41^SPATA41^ENSG00000189419.8" ; gene_name SPATA41 ; gene_type lncRNA ; havana_gene "OTTHUMG00000172281.4" ; havana_transcript "OTTHUMT00000417647.1" ; hgnc_id "HGNC:48613" ; level 2 ; orig_coord_info "chr15,100349308,100349388,-" ; transcript_id "ADAMTS17--SPATA41^ENST00000558307.1" ; transcript_name "SPATA41-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
AL512590.2--CCDC180 HAVANA gene 1001 11243 . + . FI_gene_label "AL512590.2^ENSG00000254633.2" ; ID "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; exon_id "ENSE00002146032.2" ; exon_number 1 ; gene_id "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; gene_name "AL512590.2" ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000167000.2" ; havana_transcript "OTTHUMT00000392365.2" ; level 2 ; orig_coord_info "chr9,97276569,97276697,+" ; tag basic ; transcript_id "AL512590.2--CCDC180^ENST00000531758.2" ; transcript_name "AL512590.2-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
AL512590.2--CCDC180 HAVANA RNA 1001 11243 . + . FI_gene_label "AL512590.2^ENSG00000254633.2" ; ID "AL512590.2--CCDC180^ENST00000531758.2" ; Parent "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; exon_id "ENSE00002146032.2" ; exon_number 1 ; gene_id "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; gene_name "AL512590.2" ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000167000.2" ; havana_transcript "OTTHUMT00000392365.2" ; level 2 ; orig_coord_info "chr9,97276569,97276697,+" ; tag basic ; transcript_id "AL512590.2--CCDC180^ENST00000531758.2" ; transcript_name "AL512590.2-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
GUSB--NAIPP4 HAVANA gene 14675 24647 . + . FI_gene_label "NAIPP4^ENSG00000251634.2" ; ID "GUSB--NAIPP4^NAIPP4^ENSG00000251634.2" ; exon_id "ENSE00002133593.1" ; exon_number 1 ; gene_id "GUSB--NAIPP4^NAIPP4^ENSG00000251634.2" ; gene_name NAIPP4 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000099405.6" ; havana_transcript "OTTHUMT00000372629.4" ; hgnc_id "HGNC:54494" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr5,71128672,71128753,-" ; tag basic ; transcript_id "GUSB--NAIPP4^ENST00000512908.2" ; transcript_name "NAIPP4-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
GUSB--NAIPP4 HAVANA RNA 14675 24647 . + . FI_gene_label "NAIPP4^ENSG00000251634.2" ; ID "GUSB--NAIPP4^ENST00000512908.2" ; Parent "GUSB--NAIPP4^NAIPP4^ENSG00000251634.2" ; exon_id "ENSE00002133593.1" ; exon_number 1 ; gene_id "GUSB--NAIPP4^NAIPP4^ENSG00000251634.2" ; gene_name NAIPP4 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000099405.6" ; havana_transcript "OTTHUMT00000372629.4" ; hgnc_id "HGNC:54494" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr5,71128672,71128753,-" ; tag basic ; transcript_id "GUSB--NAIPP4^ENST00000512908.2" ; transcript_name "NAIPP4-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
SDHAP1--SMBD1P HAVANA gene 13156 16004 . + . FI_gene_label "SDHAP1^ENSG00000185485.14" ; ID "SDHAP1--SMBD1P^SDHAP1^ENSG00000185485.14" ; exon_id "ENSE00002475224.1" ; exon_number 1 ; gene_id "SDHAP1--SMBD1P^SDHAP1^ENSG00000185485.14" ; gene_name SDHAP1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000155716.1" ; havana_transcript "OTTHUMT00000341372.1" ; hgnc_id "HGNC:32455" ; level 2 ; orig_coord_info "chr3,195967879,195967895,-" ; transcript_id "SDHAP1--SMBD1P^ENST00000354559.9" ; transcript_name "SDHAP1-201" ; transcript_support_level 3 ; transcript_type processed_transcript
SDHAP1--SMBD1P HAVANA RNA 13156 16004 . + . FI_gene_label "SDHAP1^ENSG00000185485.14" ; ID "SDHAP1--SMBD1P^ENST00000354559.9" ; Parent "SDHAP1--SMBD1P^SDHAP1^ENSG00000185485.14" ; exon_id "ENSE00002475224.1" ; exon_number 1 ; gene_id "SDHAP1--SMBD1P^SDHAP1^ENSG00000185485.14" ; gene_name SDHAP1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000155716.1" ; havana_transcript "OTTHUMT00000341372.1" ; hgnc_id "HGNC:32455" ; level 2 ; orig_coord_info "chr3,195967879,195967895,-" ; transcript_id "SDHAP1--SMBD1P^ENST00000354559.9" ; transcript_name "SDHAP1-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
SDHAP1--SMBD1P HAVANA gene 20681 23514 . + . FI_gene_label "SMBD1P^ENSG00000283426.1" ; ID "SDHAP1--SMBD1P^SMBD1P^ENSG00000283426.1" ; exon_id "ENSE00003792870.1" ; exon_number 1 ; gene_id "SDHAP1--SMBD1P^SMBD1P^ENSG00000283426.1" ; gene_name SMBD1P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000182568.1" ; havana_transcript "OTTHUMT00000462461.1" ; hgnc_id "HGNC:53806" ; level 2 ; orig_coord_info "chr3,195701618,195701669,+" ; tag basic ; transcript_id "SDHAP1--SMBD1P^ENST00000637412.1" ; transcript_name "SMBD1P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
SDHAP1--SMBD1P HAVANA RNA 20681 23514 . + . FI_gene_label "SMBD1P^ENSG00000283426.1" ; ID "SDHAP1--SMBD1P^ENST00000637412.1" ; Parent "SDHAP1--SMBD1P^SMBD1P^ENSG00000283426.1" ; exon_id "ENSE00003792870.1" ; exon_number 1 ; gene_id "SDHAP1--SMBD1P^SMBD1P^ENSG00000283426.1" ; gene_name SMBD1P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000182568.1" ; havana_transcript "OTTHUMT00000462461.1" ; hgnc_id "HGNC:53806" ; level 2 ; orig_coord_info "chr3,195701618,195701669,+" ; tag basic ; transcript_id "SDHAP1--SMBD1P^ENST00000637412.1" ; transcript_name "SMBD1P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
UBE2Q2P2--GOLGA6L10 HAVANA gene 9027 11999 . + . FI_gene_label "UBE2Q2P2^ENSG00000259429.5" ; ID "UBE2Q2P2--GOLGA6L10^UBE2Q2P2^ENSG00000259429.5" ; exon_id "ENSE00003731023.1" ; exon_number 1 ; gene_id "UBE2Q2P2--GOLGA6L10^UBE2Q2P2^ENSG00000259429.5" ; gene_name UBE2Q2P2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000172604.3" ; havana_transcript "OTTHUMT00000419282.2" ; hgnc_id "HGNC:37440" ; level 2 ; orig_coord_info "chr15,82414787,82414804,+" ; transcript_id "UBE2Q2P2--GOLGA6L10^ENST00000558542.2" ; transcript_name "UBE2Q2P2-201" ; transcript_support_level 5 ; transcript_type processed_transcript
UBE2Q2P2--GOLGA6L10 HAVANA RNA 9027 11999 . + . FI_gene_label "UBE2Q2P2^ENSG00000259429.5" ; ID "UBE2Q2P2--GOLGA6L10^ENST00000558542.2" ; Parent "UBE2Q2P2--GOLGA6L10^UBE2Q2P2^ENSG00000259429.5" ; exon_id "ENSE00003731023.1" ; exon_number 1 ; gene_id "UBE2Q2P2--GOLGA6L10^UBE2Q2P2^ENSG00000259429.5" ; gene_name UBE2Q2P2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000172604.3" ; havana_transcript "OTTHUMT00000419282.2" ; hgnc_id "HGNC:37440" ; level 2 ; orig_coord_info "chr15,82414787,82414804,+" ; transcript_id "UBE2Q2P2--GOLGA6L10^ENST00000558542.2" ; transcript_name "UBE2Q2P2-201" ; transcript_support_level 5 ; transcript_type processed_transcript
497 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
769 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 65 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed