Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/cc2a5c6e84922391637d3d4c17a549/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/cc2a5c6e84922391637d3d4c17a549/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/e7c68c59ed2dd6e56035981fb157f3/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bjQ-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bjQ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:35:50.930 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:35:50 GMT 2026] MarkDuplicates --INPUT 659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bjQ-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bjQ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:35:50 GMT 2026] Executing as ?@nf-52cc2a5c6e84922391637d3d4c17a549-4d708-4pl44 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:35:51 MarkDuplicates Start of doWork freeMemory: 105491672; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:35:51 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:35:51 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:35:55 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,319,181
INFO 2026-06-08 08:35:55 MarkDuplicates Tracking 3358 as yet unmatched pairs. 214 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,229,131
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 6425 as yet unmatched pairs. 291 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:8,013,295
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 10813 as yet unmatched pairs. 1768 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,868,013
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 14046 as yet unmatched pairs. 2438 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:11,248,021
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 14783 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:15,719,834
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 17680 as yet unmatched pairs. 463 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:16,990,205
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 20164 as yet unmatched pairs. 432 records in RAM.
INFO 2026-06-08 08:36:10 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:19,655,397
INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 23565 as yet unmatched pairs. 1101 records in RAM.
INFO 2026-06-08 08:36:12 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:21,839,516
INFO 2026-06-08 08:36:12 MarkDuplicates Tracking 26657 as yet unmatched pairs. 1287 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:22,639,380
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 30531 as yet unmatched pairs. 2180 records in RAM.
INFO 2026-06-08 08:36:16 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:23,978,789
INFO 2026-06-08 08:36:16 MarkDuplicates Tracking 31208 as yet unmatched pairs. 231 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:26,779,903
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 33775 as yet unmatched pairs. 203 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:28,210,016
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 36998 as yet unmatched pairs. 481 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:31,670,444
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 39701 as yet unmatched pairs. 241 records in RAM.
INFO 2026-06-08 08:36:24 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:32,942,368
INFO 2026-06-08 08:36:24 MarkDuplicates Tracking 42457 as yet unmatched pairs. 226 records in RAM.
INFO 2026-06-08 08:36:26 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:36,137,206
INFO 2026-06-08 08:36:26 MarkDuplicates Tracking 45369 as yet unmatched pairs. 368 records in RAM.
INFO 2026-06-08 08:36:28 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:39,283,234
INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 48872 as yet unmatched pairs. 1167 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:39,447,837
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 50766 as yet unmatched pairs. 561 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:41,584,475
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 53020 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:43,605,288
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 56066 as yet unmatched pairs. 367 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:46,031,491
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 59274 as yet unmatched pairs. 781 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:52,438,233
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 61465 as yet unmatched pairs. 319 records in RAM.
INFO 2026-06-08 08:36:39 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:61,833,759
INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 64187 as yet unmatched pairs. 379 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:75,749,558
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 66493 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 08:36:42 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:89,058,011
INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 69323 as yet unmatched pairs. 554 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:94,903,175
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 71791 as yet unmatched pairs. 542 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:109,237,775
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 74247 as yet unmatched pairs. 424 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:113,391,224
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 76967 as yet unmatched pairs. 476 records in RAM.
INFO 2026-06-08 08:36:48 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:117,420,572
INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 79439 as yet unmatched pairs. 373 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:119,997,219
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 82662 as yet unmatched pairs. 980 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:144,892,294
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 83134 as yet unmatched pairs. 160 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:146,376,820
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 84377 as yet unmatched pairs. 101 records in RAM.
INFO 2026-06-08 08:36:55 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:148,607,083
INFO 2026-06-08 08:36:55 MarkDuplicates Tracking 85838 as yet unmatched pairs. 633 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:149,886,271
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 87164 as yet unmatched pairs. 596 records in RAM.
INFO 2026-06-08 08:36:58 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:150,950,555
INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 89302 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:153,563,782
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 91665 as yet unmatched pairs. 112 records in RAM.
INFO 2026-06-08 08:37:01 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:154,183,033
INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 94675 as yet unmatched pairs. 531 records in RAM.
INFO 2026-06-08 08:37:03 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:155,173,962
INFO 2026-06-08 08:37:03 MarkDuplicates Tracking 96920 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:155,826,917
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 99180 as yet unmatched pairs. 170 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:156,479,666
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 102150 as yet unmatched pairs. 225 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:160,305,551
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 104762 as yet unmatched pairs. 243 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:161,543,111
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 107555 as yet unmatched pairs. 593 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:169,518,507
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 109435 as yet unmatched pairs. 74 records in RAM.
INFO 2026-06-08 08:37:13 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:174,370,999
INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 111966 as yet unmatched pairs. 259 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:182,586,165
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 114494 as yet unmatched pairs. 83 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:186,313,866
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 117329 as yet unmatched pairs. 221 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:197,159,918
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 119545 as yet unmatched pairs. 150 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:202,777,017
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 122602 as yet unmatched pairs. 589 records in RAM.
INFO 2026-06-08 08:37:21 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:205,620,212
INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 124853 as yet unmatched pairs. 263 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:209,617,921
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 127542 as yet unmatched pairs. 543 records in RAM.
INFO 2026-06-08 08:37:25 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:220,134,471
INFO 2026-06-08 08:37:25 MarkDuplicates Tracking 129781 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:225,874,301
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 132167 as yet unmatched pairs. 148 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:231,265,395
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 135209 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:241,497,882
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 137899 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:246,903,948
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 140950 as yet unmatched pairs. 385 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr2:10,048,088
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 143650 as yet unmatched pairs. 141186 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:20,447,579
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 146424 as yet unmatched pairs. 143892 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:27,069,588
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 148498 as yet unmatched pairs. 145915 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:28,752,127
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 154548 as yet unmatched pairs. 151922 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,253
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 173484 as yet unmatched pairs. 150423 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 563916 as yet unmatched pairs. 142677 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 1262961 as yet unmatched pairs. 127891 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 1385620 as yet unmatched pairs. 125529 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,418
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 1424892 as yet unmatched pairs. 124876 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr2:38,995,211
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 1448944 as yet unmatched pairs. 122453 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr2:43,574,445
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 1447376 as yet unmatched pairs. 120849 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:53,799,059
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 1443707 as yet unmatched pairs. 117136 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:55,263,672
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 1440924 as yet unmatched pairs. 114308 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr2:61,869,523
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 1438531 as yet unmatched pairs. 111871 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:69,328,392
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 1436220 as yet unmatched pairs. 109508 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:73,448,904
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 1433808 as yet unmatched pairs. 107038 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:75,652,647
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 1431155 as yet unmatched pairs. 104347 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:86,529,264
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 1428648 as yet unmatched pairs. 101776 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:95,958,598
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 1427402 as yet unmatched pairs. 100489 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:97,812,733
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 1424670 as yet unmatched pairs. 97736 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:106,423,050
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 1422212 as yet unmatched pairs. 95202 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:108,767,975
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 1421145 as yet unmatched pairs. 94102 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:110,536,424
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 1420996 as yet unmatched pairs. 93938 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:112,775,015
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 1417643 as yet unmatched pairs. 90546 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:127,505,378
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 1415848 as yet unmatched pairs. 88695 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:136,115,293
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 1414494 as yet unmatched pairs. 87264 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:157,738,440
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 1410914 as yet unmatched pairs. 83641 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:162,017,138
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 1409157 as yet unmatched pairs. 81819 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:172,484,869
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 1406032 as yet unmatched pairs. 78648 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:178,570,223
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 1403696 as yet unmatched pairs. 76280 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:186,677,320
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 1401493 as yet unmatched pairs. 74036 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:188,996,132
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 1403210 as yet unmatched pairs. 75723 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:189,008,053
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 1399825 as yet unmatched pairs. 72310 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:189,097,302
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 1393475 as yet unmatched pairs. 65933 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:191,386,060
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 1390726 as yet unmatched pairs. 63136 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:200,854,687
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 1389362 as yet unmatched pairs. 61708 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:203,489,629
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 1386605 as yet unmatched pairs. 58905 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,478
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 1406896 as yet unmatched pairs. 79143 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,573
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 1394770 as yet unmatched pairs. 66983 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,108
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 1402800 as yet unmatched pairs. 75005 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:215,373,345
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 1401813 as yet unmatched pairs. 74005 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,560
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 1387569 as yet unmatched pairs. 59736 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,380,813
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 1398902 as yet unmatched pairs. 71055 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,120
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 1384018 as yet unmatched pairs. 56146 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,740
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 1381375 as yet unmatched pairs. 53488 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,826
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 1370060 as yet unmatched pairs. 42163 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,133
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 1376398 as yet unmatched pairs. 48481 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,933
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 1365421 as yet unmatched pairs. 37485 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,689
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 1362943 as yet unmatched pairs. 34991 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,425,169
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 1362760 as yet unmatched pairs. 34786 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,324
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 1364466 as yet unmatched pairs. 36475 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:216,678,952
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 1350415 as yet unmatched pairs. 22374 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:218,747,026
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 1347264 as yet unmatched pairs. 19183 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr2:224,778,263
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 1344469 as yet unmatched pairs. 16337 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:231,138,740
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 1342002 as yet unmatched pairs. 13791 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:235,699,744
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 1339633 as yet unmatched pairs. 11363 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:237,353,364
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 1340043 as yet unmatched pairs. 11734 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:237,374,554
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 1337058 as yet unmatched pairs. 8718 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:238,352,868
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 1331557 as yet unmatched pairs. 3160 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:241,633,222
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 1328815 as yet unmatched pairs. 350 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr3:9,923,897
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 1326330 as yet unmatched pairs. 67179 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:14,402,758
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 1323604 as yet unmatched pairs. 64399 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:30,672,218
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 1321279 as yet unmatched pairs. 62002 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:38,122,965
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 1318613 as yet unmatched pairs. 59287 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:43,080,760
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 1315819 as yet unmatched pairs. 56443 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:47,410,059
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 1313294 as yet unmatched pairs. 53873 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr3:48,571,267
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 1310832 as yet unmatched pairs. 51390 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:49,111,939
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 1307755 as yet unmatched pairs. 48269 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:50,057,969
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 1305054 as yet unmatched pairs. 45534 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:52,249,296
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 1302143 as yet unmatched pairs. 42596 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:53,344,922
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 1299221 as yet unmatched pairs. 39642 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr3:62,218,905
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 1296698 as yet unmatched pairs. 37068 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:81,642,890
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 1294294 as yet unmatched pairs. 34609 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:100,736,623
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 1292792 as yet unmatched pairs. 33071 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:112,638,901
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 1289762 as yet unmatched pairs. 30010 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:122,109,301
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 1287387 as yet unmatched pairs. 27588 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:124,809,147
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 1285175 as yet unmatched pairs. 25334 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:129,171,216
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 1282932 as yet unmatched pairs. 23036 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr3:133,587,179
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 1279597 as yet unmatched pairs. 19653 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:142,560,263
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 1277062 as yet unmatched pairs. 17077 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:150,583,240
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 1274782 as yet unmatched pairs. 14752 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:168,024,534
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 1272222 as yet unmatched pairs. 12132 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr3:179,623,938
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 1269941 as yet unmatched pairs. 9767 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:184,324,329
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 1267561 as yet unmatched pairs. 7361 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,288
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 1267752 as yet unmatched pairs. 7501 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:195,780,195
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 1263699 as yet unmatched pairs. 3410 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:196,472,538
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 1261459 as yet unmatched pairs. 1147 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr4:1,213,539
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 1259655 as yet unmatched pairs. 57546 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:2,876,059
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 1256377 as yet unmatched pairs. 54226 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:7,025,235
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 1253098 as yet unmatched pairs. 50907 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:13,604,333
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 1250399 as yet unmatched pairs. 48164 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr4:25,662,542
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 1254792 as yet unmatched pairs. 52493 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr4:25,670,740
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 1257465 as yet unmatched pairs. 55149 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:25,674,616
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 1247054 as yet unmatched pairs. 44720 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:30,920,315
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 1240830 as yet unmatched pairs. 38464 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr4:41,257,113
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 1238294 as yet unmatched pairs. 35866 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr4:54,288,971
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 1236982 as yet unmatched pairs. 34511 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:67,677,611
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 1234261 as yet unmatched pairs. 31748 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:74,384,744
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 1231309 as yet unmatched pairs. 28755 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:77,164,372
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 1228589 as yet unmatched pairs. 25990 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:84,736,183
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 1226206 as yet unmatched pairs. 23558 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:88,131,111
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 1223692 as yet unmatched pairs. 21002 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:102,799,411
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 1222544 as yet unmatched pairs. 19793 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:112,647,334
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 1219130 as yet unmatched pairs. 16310 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr4:122,933,442
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 1216789 as yet unmatched pairs. 13930 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:143,337,204
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 1214293 as yet unmatched pairs. 11385 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr4:151,159,315
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 1212034 as yet unmatched pairs. 9070 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr4:159,350,138
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 1209326 as yet unmatched pairs. 6296 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr4:169,116,612
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 1206710 as yet unmatched pairs. 3624 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr4:186,597,686
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 1204314 as yet unmatched pairs. 1194 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 2s. Last read position: chr5:1,494,863
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 1202919 as yet unmatched pairs. 80154 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:14,290,862
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 1200554 as yet unmatched pairs. 77743 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:14,390,922
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 1197730 as yet unmatched pairs. 74878 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:14,504,469
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 1194890 as yet unmatched pairs. 72012 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:33,576,348
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 1190767 as yet unmatched pairs. 67837 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:38,864,541
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 1188695 as yet unmatched pairs. 65721 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:50,829,898
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 1186388 as yet unmatched pairs. 63376 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:62,392,801
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 1183772 as yet unmatched pairs. 60683 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:70,946,131
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 1182237 as yet unmatched pairs. 59095 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 2s. Last read position: chr5:74,636,159
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 1180055 as yet unmatched pairs. 56889 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:83,471,831
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 1177649 as yet unmatched pairs. 54430 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:83,545,539
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 1177165 as yet unmatched pairs. 53931 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:96,741,284
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 1173412 as yet unmatched pairs. 50111 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:111,126,764
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 1170626 as yet unmatched pairs. 47278 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:128,158,049
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 1168117 as yet unmatched pairs. 44718 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:134,562,297
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 1165633 as yet unmatched pairs. 42194 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:137,753,127
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 1162922 as yet unmatched pairs. 39452 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:139,325,458
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 1160940 as yet unmatched pairs. 37443 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:141,432,305
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 1157971 as yet unmatched pairs. 34425 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:146,271,504
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 1155414 as yet unmatched pairs. 31827 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:150,121,906
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 1155175 as yet unmatched pairs. 31545 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,176
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 1180603 as yet unmatched pairs. 56951 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:150,404,719
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 1166535 as yet unmatched pairs. 42860 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr5:150,407,152
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 1151479 as yet unmatched pairs. 27784 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr5:150,695,591
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 1141999 as yet unmatched pairs. 18286 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:154,755,868
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 1139423 as yet unmatched pairs. 15669 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:169,684,211
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 1137132 as yet unmatched pairs. 13337 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:172,234,161
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 1134699 as yet unmatched pairs. 10875 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:177,294,560
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 1132129 as yet unmatched pairs. 8279 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr5:179,154,057
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 1129754 as yet unmatched pairs. 5863 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,215
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 1127695 as yet unmatched pairs. 3776 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr6:610,120
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 1123976 as yet unmatched pairs. 71261 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:7,412,914
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 1121190 as yet unmatched pairs. 68443 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 2s. Last read position: chr6:17,764,525
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 1119210 as yet unmatched pairs. 66410 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:26,452,413
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 1116081 as yet unmatched pairs. 63241 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:29,944,237
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 1117097 as yet unmatched pairs. 64235 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:30,744,345
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 1111500 as yet unmatched pairs. 58605 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:31,356,265
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 1109525 as yet unmatched pairs. 56613 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:31,815,715
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 1107731 as yet unmatched pairs. 54781 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr6:31,950,621
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 1104741 as yet unmatched pairs. 51780 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:32,584,367
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 1102739 as yet unmatched pairs. 49761 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:33,201,594
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 1099845 as yet unmatched pairs. 46840 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:33,693,558
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 1097053 as yet unmatched pairs. 44024 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:37,453,071
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 1094241 as yet unmatched pairs. 41169 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:43,171,951
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 1091501 as yet unmatched pairs. 38385 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:44,253,160
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 1088765 as yet unmatched pairs. 35613 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:56,515,589
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 1086505 as yet unmatched pairs. 33231 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr6:71,301,453
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 1084616 as yet unmatched pairs. 31318 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:75,886,057
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 1081768 as yet unmatched pairs. 28428 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:89,387,556
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 1079104 as yet unmatched pairs. 25734 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:107,912,747
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 1076898 as yet unmatched pairs. 23479 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:116,120,108
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 1075061 as yet unmatched pairs. 21595 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:117,425,533
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 1072799 as yet unmatched pairs. 19315 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:130,858,144
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 1069978 as yet unmatched pairs. 16438 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:138,911,330
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 1067120 as yet unmatched pairs. 13545 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:149,378,606
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 1065048 as yet unmatched pairs. 11439 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:153,282,413
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 1062133 as yet unmatched pairs. 8483 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:158,784,690
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 1060367 as yet unmatched pairs. 6675 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:163,563,675
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 1060262 as yet unmatched pairs. 6545 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 2s. Last read position: chr6:170,317,670
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 1054446 as yet unmatched pairs. 691 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr7:2,731,382
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 1051719 as yet unmatched pairs. 79918 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,836
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 1052569 as yet unmatched pairs. 80736 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,540
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 1048839 as yet unmatched pairs. 76971 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:13,900,770
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 1043070 as yet unmatched pairs. 71168 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:26,196,560
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 1041617 as yet unmatched pairs. 69670 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:36,406,368
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 1037476 as yet unmatched pairs. 65466 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:44,106,829
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 1035602 as yet unmatched pairs. 63562 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:44,834,518
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 1032482 as yet unmatched pairs. 60405 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:55,152,590
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 1029653 as yet unmatched pairs. 57542 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:70,790,464
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 1026722 as yet unmatched pairs. 54571 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:74,068,659
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 1025083 as yet unmatched pairs. 52920 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:75,441,064
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 1023543 as yet unmatched pairs. 51364 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:76,611,420
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 1020754 as yet unmatched pairs. 48549 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 2s. Last read position: chr7:90,984,166
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 1018595 as yet unmatched pairs. 46363 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr7:93,132,204
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 1016591 as yet unmatched pairs. 44339 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:94,411,135
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 1019641 as yet unmatched pairs. 47358 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:94,428,292
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 1011611 as yet unmatched pairs. 39313 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:98,978,270
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 1007858 as yet unmatched pairs. 35534 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:100,220,100
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 1005330 as yet unmatched pairs. 32972 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:101,127,208
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 1002744 as yet unmatched pairs. 30368 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:102,657,542
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 1000742 as yet unmatched pairs. 28346 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 66s. Last read position: chr7:107,755,456
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 998147 as yet unmatched pairs. 25711 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 2s. Last read position: chr7:116,699,292
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 999178 as yet unmatched pairs. 26694 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr7:121,350,450
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 994651 as yet unmatched pairs. 22149 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:128,085,761
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 991451 as yet unmatched pairs. 18925 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:134,007,764
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 988097 as yet unmatched pairs. 15485 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr7:137,915,989
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 988888 as yet unmatched pairs. 16251 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr7:140,778,038
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 984047 as yet unmatched pairs. 11348 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 2s. Last read position: chr7:144,268,506
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 981040 as yet unmatched pairs. 8306 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr7:150,793,231
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 979396 as yet unmatched pairs. 6643 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr7:152,177,766
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 975552 as yet unmatched pairs. 2761 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr7:158,914,252
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 973093 as yet unmatched pairs. 253 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr8:13,499,677
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 970508 as yet unmatched pairs. 55874 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:22,614,873
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 968044 as yet unmatched pairs. 53386 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:29,188,583
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 965304 as yet unmatched pairs. 50612 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:38,348,132
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 962616 as yet unmatched pairs. 47876 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:41,611,979
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 960211 as yet unmatched pairs. 45452 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr8:47,890,398
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 957683 as yet unmatched pairs. 42882 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:60,821,839
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 954712 as yet unmatched pairs. 39889 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr8:66,665,890
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 952575 as yet unmatched pairs. 37739 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:70,583,289
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 950847 as yet unmatched pairs. 35980 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:93,922,935
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 947713 as yet unmatched pairs. 32794 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,349
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 949522 as yet unmatched pairs. 34575 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 2s. Last read position: chr8:102,651,583
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 943201 as yet unmatched pairs. 28213 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:119,616,273
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 940170 as yet unmatched pairs. 25129 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,299
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 938224 as yet unmatched pairs. 23137 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr8:133,475,833
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 935023 as yet unmatched pairs. 19882 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr8:143,586,729
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 933064 as yet unmatched pairs. 17867 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,923
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 930049 as yet unmatched pairs. 14836 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,431
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 929190 as yet unmatched pairs. 13972 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr8:143,920,340
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 926427 as yet unmatched pairs. 11186 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr8:143,927,987
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 922857 as yet unmatched pairs. 7592 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr8:144,255,508
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 918513 as yet unmatched pairs. 3230 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr9:214,911
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 915468 as yet unmatched pairs. 52905 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:14,113,001
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 913290 as yet unmatched pairs. 50642 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:33,047,258
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 910332 as yet unmatched pairs. 47639 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr9:35,107,912
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 907784 as yet unmatched pairs. 45075 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:37,485,965
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 905003 as yet unmatched pairs. 42261 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:73,170,080
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 905150 as yet unmatched pairs. 42364 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr9:89,001,602
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 900689 as yet unmatched pairs. 37875 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 3s. Last read position: chr9:95,978,084
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 897981 as yet unmatched pairs. 35135 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr9:105,522,855
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 895242 as yet unmatched pairs. 32363 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:113,169,564
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 892853 as yet unmatched pairs. 29934 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:115,046,518
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 891119 as yet unmatched pairs. 28183 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr9:120,536,470
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 887632 as yet unmatched pairs. 24684 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:124,857,898
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 885328 as yet unmatched pairs. 22332 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:127,817,161
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 882429 as yet unmatched pairs. 19416 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr9:128,612,230
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 879637 as yet unmatched pairs. 16606 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:130,874,866
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 877205 as yet unmatched pairs. 14156 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr9:132,329,950
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 874746 as yet unmatched pairs. 11656 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr9:134,732,056
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 872497 as yet unmatched pairs. 9376 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:136,290,505
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 868438 as yet unmatched pairs. 5295 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr9:136,981,579
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 865502 as yet unmatched pairs. 2332 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 2s. Last read position: chr10:3,105,468
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 863065 as yet unmatched pairs. 48717 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:7,802,771
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 861170 as yet unmatched pairs. 46788 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:17,872,013
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 857659 as yet unmatched pairs. 43226 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:27,148,947
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 855198 as yet unmatched pairs. 40731 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:32,031,206
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 853754 as yet unmatched pairs. 39256 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:35,483,414
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 851044 as yet unmatched pairs. 36515 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr10:46,130,756
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 848103 as yet unmatched pairs. 33558 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr10:59,247,668
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 846152 as yet unmatched pairs. 31578 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:68,963,376
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 843981 as yet unmatched pairs. 29363 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:73,011,014
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 841453 as yet unmatched pairs. 26798 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr10:75,176,576
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 838887 as yet unmatched pairs. 24206 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr10:86,499,867
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 836407 as yet unmatched pairs. 21696 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr10:91,848,587
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 834004 as yet unmatched pairs. 19275 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:95,868,473
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 831414 as yet unmatched pairs. 16655 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr10:100,347,480
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 828975 as yet unmatched pairs. 14191 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr10:102,401,861
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 826313 as yet unmatched pairs. 11494 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:109,888,496
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 823648 as yet unmatched pairs. 8809 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr10:119,042,031
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 821475 as yet unmatched pairs. 6612 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr10:124,045,889
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 820046 as yet unmatched pairs. 5160 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 2s. Last read position: chr10:133,237,958
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 816035 as yet unmatched pairs. 1104 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr11:319,789
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 820631 as yet unmatched pairs. 99699 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 2s. Last read position: chr11:800,154
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 810295 as yet unmatched pairs. 89352 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:1,242,838
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 808034 as yet unmatched pairs. 87071 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,868
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 807446 as yet unmatched pairs. 86479 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,343
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 807142 as yet unmatched pairs. 86173 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,058
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 804833 as yet unmatched pairs. 83853 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:1,759,595
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 803904 as yet unmatched pairs. 82919 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:5,706,593
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 799290 as yet unmatched pairs. 78269 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:8,917,113
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 796264 as yet unmatched pairs. 75232 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:11,966,928
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 793870 as yet unmatched pairs. 72815 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:18,351,880
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 791375 as yet unmatched pairs. 70288 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:33,287,306
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 789440 as yet unmatched pairs. 68322 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:43,414,616
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 786445 as yet unmatched pairs. 65307 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr11:46,796,865
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 783643 as yet unmatched pairs. 62483 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:57,313,771
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 782401 as yet unmatched pairs. 61234 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:57,815,398
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 779461 as yet unmatched pairs. 58268 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:61,789,855
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 776481 as yet unmatched pairs. 55264 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,421
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 775065 as yet unmatched pairs. 53830 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,041
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 773316 as yet unmatched pairs. 52070 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:62,628,795
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 769088 as yet unmatched pairs. 47832 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:64,237,547
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 766324 as yet unmatched pairs. 45051 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:65,121,510
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 764962 as yet unmatched pairs. 43668 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr11:65,618,160
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 760544 as yet unmatched pairs. 39072 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr11:66,052,464
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 757562 as yet unmatched pairs. 36076 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:67,245,286
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 754630 as yet unmatched pairs. 33120 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:68,263,695
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 751562 as yet unmatched pairs. 30038 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:71,491,846
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 749100 as yet unmatched pairs. 27560 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:73,310,716
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 746219 as yet unmatched pairs. 24662 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:76,661,088
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 743247 as yet unmatched pairs. 21668 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr11:86,449,888
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 740767 as yet unmatched pairs. 19149 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:96,341,707
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 738722 as yet unmatched pairs. 17070 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:105,034,383
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 735841 as yet unmatched pairs. 14158 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:115,209,608
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 733680 as yet unmatched pairs. 11967 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:118,504,997
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 731394 as yet unmatched pairs. 9662 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:119,069,191
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 728312 as yet unmatched pairs. 6561 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr11:123,060,703
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 728769 as yet unmatched pairs. 7000 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr11:130,121,645
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 723346 as yet unmatched pairs. 1555 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr12:879,553
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 721508 as yet unmatched pairs. 89244 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:6,235,248
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 718695 as yet unmatched pairs. 86405 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:6,598,284
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 715646 as yet unmatched pairs. 83338 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:6,967,755
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 712938 as yet unmatched pairs. 80618 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:8,096,061
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 710087 as yet unmatched pairs. 77746 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:11,853,465
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 709120 as yet unmatched pairs. 76764 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:16,354,337
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 706262 as yet unmatched pairs. 73890 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:27,691,794
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 703364 as yet unmatched pairs. 70953 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:45,331,313
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 700733 as yet unmatched pairs. 68291 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:48,834,347
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 697914 as yet unmatched pairs. 65451 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,493
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 695725 as yet unmatched pairs. 63240 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:49,791,989
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 693170 as yet unmatched pairs. 60680 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:52,233,470
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 690433 as yet unmatched pairs. 57924 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:53,172,553
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 687619 as yet unmatched pairs. 55098 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:54,281,483
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 687769 as yet unmatched pairs. 55228 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:55,952,907
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 682900 as yet unmatched pairs. 50350 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:56,326,726
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 680347 as yet unmatched pairs. 47794 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:57,089,241
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 677568 as yet unmatched pairs. 44995 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:57,162,966
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 675450 as yet unmatched pairs. 42874 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:57,498,172
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 672360 as yet unmatched pairs. 39774 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr12:64,431,812
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 669801 as yet unmatched pairs. 37187 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr12:69,574,341
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 666935 as yet unmatched pairs. 34292 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:79,689,834
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 664380 as yet unmatched pairs. 31721 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:94,169,263
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 662229 as yet unmatched pairs. 29542 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:101,765,155
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 660036 as yet unmatched pairs. 27334 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:107,712,134
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 657218 as yet unmatched pairs. 24477 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:110,339,651
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 655453 as yet unmatched pairs. 22706 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:112,283,112
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 652001 as yet unmatched pairs. 19232 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:115,991,308
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 650045 as yet unmatched pairs. 17256 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr12:120,282,512
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 646602 as yet unmatched pairs. 13789 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,833
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 645020 as yet unmatched pairs. 12187 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:123,584,774
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 642072 as yet unmatched pairs. 9228 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:124,372,421
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 638852 as yet unmatched pairs. 5983 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:132,021,163
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 636269 as yet unmatched pairs. 3380 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:133,156,756
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 633260 as yet unmatched pairs. 347 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr13:24,284,256
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 630531 as yet unmatched pairs. 21136 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr13:33,127,469
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 628092 as yet unmatched pairs. 18675 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr13:40,559,566
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 626956 as yet unmatched pairs. 17523 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr13:46,158,579
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 623280 as yet unmatched pairs. 13829 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr13:75,636,675
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 620906 as yet unmatched pairs. 11430 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr13:98,213,270
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 618292 as yet unmatched pairs. 8782 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr13:110,170,591
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 615568 as yet unmatched pairs. 6043 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr13:110,491,230
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 613104 as yet unmatched pairs. 3576 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:19,678,209
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 609554 as yet unmatched pairs. 53807 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:22,841,503
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 608159 as yet unmatched pairs. 52392 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 2s. Last read position: chr14:24,137,707
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 605016 as yet unmatched pairs. 49240 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:30,947,161
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 601752 as yet unmatched pairs. 45965 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr14:35,826,575
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 599144 as yet unmatched pairs. 43338 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:50,476,287
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 597197 as yet unmatched pairs. 41338 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:55,369,568
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 594249 as yet unmatched pairs. 38358 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr14:61,741,070
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 592941 as yet unmatched pairs. 37023 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr14:67,387,290
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 589392 as yet unmatched pairs. 33449 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr14:69,768,625
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 587494 as yet unmatched pairs. 31538 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr14:73,946,530
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 583993 as yet unmatched pairs. 28030 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr14:75,280,119
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 582535 as yet unmatched pairs. 26552 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr14:88,609,379
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 579538 as yet unmatched pairs. 23542 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr14:94,079,508
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 576688 as yet unmatched pairs. 20674 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr14:100,239,127
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 573603 as yet unmatched pairs. 17563 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr14:102,081,729
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 571234 as yet unmatched pairs. 15171 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr14:103,679,384
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 569077 as yet unmatched pairs. 12995 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr14:104,943,750
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 566359 as yet unmatched pairs. 10265 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr14:105,051,105
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 563521 as yet unmatched pairs. 7426 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr14:105,668,119
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 561202 as yet unmatched pairs. 5095 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,565
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 562019 as yet unmatched pairs. 5900 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,522
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 557519 as yet unmatched pairs. 1386 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:28,636,487
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 554614 as yet unmatched pairs. 41148 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:32,733,250
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 553045 as yet unmatched pairs. 39572 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:39,591,504
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 551473 as yet unmatched pairs. 37976 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr15:41,742,633
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 548078 as yet unmatched pairs. 34569 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr15:43,746,521
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 545331 as yet unmatched pairs. 31815 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr15:48,430,681
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 543324 as yet unmatched pairs. 29798 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr15:52,481,661
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 540138 as yet unmatched pairs. 26593 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr15:59,217,927
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 537932 as yet unmatched pairs. 24378 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr15:63,663,071
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 535258 as yet unmatched pairs. 21687 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr15:67,181,245
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 532656 as yet unmatched pairs. 19072 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr15:72,346,594
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 530308 as yet unmatched pairs. 16706 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr15:74,035,762
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 529635 as yet unmatched pairs. 16023 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 2s. Last read position: chr15:76,287,889
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 524502 as yet unmatched pairs. 10871 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr15:82,436,054
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 522035 as yet unmatched pairs. 8384 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr15:85,727,133
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 520428 as yet unmatched pairs. 6769 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr15:90,487,029
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 517382 as yet unmatched pairs. 3707 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr15:101,053,353
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 514246 as yet unmatched pairs. 558 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr16:634,578
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 511538 as yet unmatched pairs. 81442 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:1,541,960
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 508558 as yet unmatched pairs. 78451 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:2,102,869
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 505190 as yet unmatched pairs. 75081 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,675
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 502571 as yet unmatched pairs. 72447 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:2,769,098
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 500722 as yet unmatched pairs. 70597 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:3,736,750
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 496832 as yet unmatched pairs. 66702 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:4,885,775
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 493982 as yet unmatched pairs. 63835 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:11,887,720
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 491246 as yet unmatched pairs. 61078 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:14,881,586
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 489390 as yet unmatched pairs. 59212 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr16:15,369,831
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 488481 as yet unmatched pairs. 58302 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 2s. Last read position: chr16:16,340,311
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 486698 as yet unmatched pairs. 56509 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:18,358,483
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 485945 as yet unmatched pairs. 55751 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:18,869,943
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 484579 as yet unmatched pairs. 54384 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,423
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 482415 as yet unmatched pairs. 52212 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:21,439,385
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 481288 as yet unmatched pairs. 51083 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:21,836,941
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 480275 as yet unmatched pairs. 50064 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:22,322,907
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 479325 as yet unmatched pairs. 49108 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:22,533,924
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 480072 as yet unmatched pairs. 49850 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:23,445,906
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 478070 as yet unmatched pairs. 47844 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:28,117,335
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 475894 as yet unmatched pairs. 45665 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:28,882,448
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 472971 as yet unmatched pairs. 42731 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:29,463,462
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 473926 as yet unmatched pairs. 43674 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:29,530,113
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 471680 as yet unmatched pairs. 41418 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:30,000,932
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 469034 as yet unmatched pairs. 38764 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:30,223,452
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 466578 as yet unmatched pairs. 36304 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr16:30,505,258
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 465533 as yet unmatched pairs. 35250 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:30,979,142
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 462613 as yet unmatched pairs. 32318 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:31,362,099
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 460034 as yet unmatched pairs. 29736 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr16:53,226,382
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 457501 as yet unmatched pairs. 27195 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr16:56,609,039
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 471441 as yet unmatched pairs. 41129 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 2s. Last read position: chr16:57,651,252
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 451491 as yet unmatched pairs. 21166 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 2s. Last read position: chr16:67,066,727
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 448728 as yet unmatched pairs. 18386 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:68,678,781
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 446069 as yet unmatched pairs. 15721 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:70,371,439
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 443333 as yet unmatched pairs. 12977 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:74,492,956
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 440801 as yet unmatched pairs. 10431 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:84,590,261
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 437732 as yet unmatched pairs. 7333 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr16:88,643,503
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 436305 as yet unmatched pairs. 5893 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:89,695,731
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 431616 as yet unmatched pairs. 1183 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 3s. Last read position: chr17:1,467,854
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 429002 as yet unmatched pairs. 169444 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 2s. Last read position: chr17:2,613,780
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 426012 as yet unmatched pairs. 166447 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:4,950,570
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 423238 as yet unmatched pairs. 163665 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,844
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 420715 as yet unmatched pairs. 161141 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr17:7,579,808
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 418565 as yet unmatched pairs. 158986 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:8,228,256
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 415620 as yet unmatched pairs. 156036 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 2s. Last read position: chr17:16,217,330
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 412842 as yet unmatched pairs. 153249 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr17:18,242,612
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 410042 as yet unmatched pairs. 150432 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:27,550,608
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 407722 as yet unmatched pairs. 148101 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 2s. Last read position: chr17:28,758,863
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 405074 as yet unmatched pairs. 145443 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 2s. Last read position: chr17:30,427,403
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 403389 as yet unmatched pairs. 143743 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 2s. Last read position: chr17:32,334,486
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 399839 as yet unmatched pairs. 140189 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr17:35,820,161
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 402199 as yet unmatched pairs. 142545 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr17:37,235,019
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 395496 as yet unmatched pairs. 135840 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr17:38,720,664
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 394166 as yet unmatched pairs. 134507 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr17:39,708,495
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 393149 as yet unmatched pairs. 133481 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr17:40,273,895
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 388678 as yet unmatched pairs. 129008 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 2s. Last read position: chr17:41,624,159
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 386026 as yet unmatched pairs. 126354 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:42,345,611
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 383730 as yet unmatched pairs. 124044 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr17:43,533,971
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 380756 as yet unmatched pairs. 121060 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr17:45,232,388
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 377696 as yet unmatched pairs. 117994 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr17:46,557,461
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 375928 as yet unmatched pairs. 116223 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr17:48,058,986
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 373764 as yet unmatched pairs. 114045 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 63s. Last read position: chr17:50,149,448
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 370551 as yet unmatched pairs. 110819 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 74s. Last read position: chr17:50,185,823
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 378581 as yet unmatched pairs. 118849 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,490
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 380342 as yet unmatched pairs. 120608 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,911
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 397161 as yet unmatched pairs. 137422 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,515
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 394499 as yet unmatched pairs. 134754 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,099
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 428703 as yet unmatched pairs. 168953 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,772
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 399528 as yet unmatched pairs. 139778 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,381
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 376739 as yet unmatched pairs. 116985 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,517
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 405024 as yet unmatched pairs. 145263 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,013
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 384988 as yet unmatched pairs. 125224 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,542
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 383736 as yet unmatched pairs. 123970 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,803
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 365993 as yet unmatched pairs. 106224 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,683
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 375641 as yet unmatched pairs. 115866 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,968
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 376124 as yet unmatched pairs. 116343 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,358
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 381262 as yet unmatched pairs. 121473 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,756
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 363058 as yet unmatched pairs. 103262 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,563
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 349524 as yet unmatched pairs. 89721 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,156
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 346067 as yet unmatched pairs. 86259 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,313
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 426119 as yet unmatched pairs. 166304 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,655
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 382044 as yet unmatched pairs. 122216 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,752
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 369208 as yet unmatched pairs. 109373 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,241
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 329481 as yet unmatched pairs. 69641 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,568
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 328320 as yet unmatched pairs. 68480 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,201,411
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 322041 as yet unmatched pairs. 62200 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr17:51,201,681
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 302449 as yet unmatched pairs. 42596 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr17:59,660,502
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 301676 as yet unmatched pairs. 41820 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 2s. Last read position: chr17:60,211,013
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 297417 as yet unmatched pairs. 37555 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 2s. Last read position: chr17:63,421,827
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 294945 as yet unmatched pairs. 35063 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr17:64,504,760
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 293379 as yet unmatched pairs. 33493 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr17:67,947,770
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 290140 as yet unmatched pairs. 30241 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr17:74,209,215
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 287279 as yet unmatched pairs. 27368 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr17:75,727,490
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 284685 as yet unmatched pairs. 24760 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr17:76,007,700
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 281536 as yet unmatched pairs. 21607 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr17:77,402,504
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 278887 as yet unmatched pairs. 18946 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr17:78,974,719
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 276273 as yet unmatched pairs. 16325 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr17:80,327,836
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 274815 as yet unmatched pairs. 14861 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr17:80,360,078
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 270956 as yet unmatched pairs. 10998 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 2s. Last read position: chr17:81,511,237
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 268460 as yet unmatched pairs. 8498 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr17:81,868,388
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 266480 as yet unmatched pairs. 6507 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr17:82,439,690
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 261376 as yet unmatched pairs. 1398 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr18:3,253,356
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 259275 as yet unmatched pairs. 15989 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr18:11,066,190
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 256327 as yet unmatched pairs. 13037 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 2s. Last read position: chr18:23,556,446
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 253658 as yet unmatched pairs. 10356 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr18:33,744,087
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 250898 as yet unmatched pairs. 7586 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr18:50,917,404
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 248583 as yet unmatched pairs. 5267 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr18:62,279,741
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 246259 as yet unmatched pairs. 2930 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr19:580,376
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 243254 as yet unmatched pairs. 88126 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr19:1,122,991
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 240462 as yet unmatched pairs. 85330 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr19:2,042,012
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 237177 as yet unmatched pairs. 82030 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 2s. Last read position: chr19:3,547,895
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 233923 as yet unmatched pairs. 78770 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:5,218,465
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 230524 as yet unmatched pairs. 75363 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr19:6,709,824
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 228289 as yet unmatched pairs. 73122 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr19:8,399,920
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 224903 as yet unmatched pairs. 69730 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:10,118,672
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 222617 as yet unmatched pairs. 67434 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:10,924,090
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 219417 as yet unmatched pairs. 64228 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:12,664,824
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 216783 as yet unmatched pairs. 61587 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr19:14,088,480
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 213662 as yet unmatched pairs. 58465 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr19:15,174,371
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 211027 as yet unmatched pairs. 55828 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:15,400,985
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 207992 as yet unmatched pairs. 52791 records in RAM.
INFO 2026-06-08 08:56:10 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:17,244,989
INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 204865 as yet unmatched pairs. 49661 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr19:18,538,419
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 201930 as yet unmatched pairs. 46721 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:23,827,534
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 198596 as yet unmatched pairs. 43383 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:35,270,718
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 195631 as yet unmatched pairs. 40414 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr19:38,309,405
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 192945 as yet unmatched pairs. 37724 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,357
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 190508 as yet unmatched pairs. 35282 records in RAM.
INFO 2026-06-08 08:56:20 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 2s. Last read position: chr19:40,242,618
INFO 2026-06-08 08:56:20 MarkDuplicates Tracking 188811 as yet unmatched pairs. 33582 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr19:41,715,658
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 184439 as yet unmatched pairs. 29208 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,166
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 181739 as yet unmatched pairs. 26505 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr19:45,297,916
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 178658 as yet unmatched pairs. 23422 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:46,782,436
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 175729 as yet unmatched pairs. 20486 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr19:48,872,534
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 172929 as yet unmatched pairs. 17683 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr19:49,599,516
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 169950 as yet unmatched pairs. 14693 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr19:51,104,517
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 166823 as yet unmatched pairs. 11565 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:54,108,325
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 164588 as yet unmatched pairs. 9322 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr19:54,461,608
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 162798 as yet unmatched pairs. 7526 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 2s. Last read position: chr19:55,621,682
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 158786 as yet unmatched pairs. 3509 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr19:58,388,157
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 157724 as yet unmatched pairs. 2444 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr20:3,594,547
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 153281 as yet unmatched pairs. 38664 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 2s. Last read position: chr20:17,659,447
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 150472 as yet unmatched pairs. 35851 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr20:31,527,518
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 148341 as yet unmatched pairs. 33718 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 2s. Last read position: chr20:34,281,040
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 145284 as yet unmatched pairs. 30661 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 2s. Last read position: chr20:35,738,967
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 142846 as yet unmatched pairs. 28219 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr20:38,516,361
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 139799 as yet unmatched pairs. 25163 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr20:44,932,305
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 137199 as yet unmatched pairs. 22561 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 2s. Last read position: chr20:45,939,291
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 134337 as yet unmatched pairs. 19695 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr20:49,247,335
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 131852 as yet unmatched pairs. 17208 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr20:53,582,565
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 129214 as yet unmatched pairs. 14567 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr20:58,993,030
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 125690 as yet unmatched pairs. 11039 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr20:62,333,221
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 123163 as yet unmatched pairs. 8506 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr20:63,521,285
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 121292 as yet unmatched pairs. 6630 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr20:63,742,574
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 116460 as yet unmatched pairs. 1797 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,094
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 113855 as yet unmatched pairs. 20296 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,260
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 113485 as yet unmatched pairs. 19924 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr21:29,342,480
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 111341 as yet unmatched pairs. 17778 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr21:34,792,335
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 108504 as yet unmatched pairs. 14935 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr21:41,452,640
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 105522 as yet unmatched pairs. 11949 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr21:44,861,181
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 103341 as yet unmatched pairs. 9764 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,008
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 100914 as yet unmatched pairs. 7335 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr21:46,117,443
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 98263 as yet unmatched pairs. 4684 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 2s. Last read position: chr22:15,854,275
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 93602 as yet unmatched pairs. 45993 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr22:20,464,933
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 90590 as yet unmatched pairs. 42981 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr22:23,253,876
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 89535 as yet unmatched pairs. 41925 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr22:23,957,733
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 84405 as yet unmatched pairs. 36795 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 2s. Last read position: chr22:29,050,531
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 81396 as yet unmatched pairs. 33785 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chr22:30,013,464
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 79054 as yet unmatched pairs. 31441 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chr22:32,399,625
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 76182 as yet unmatched pairs. 28567 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,339
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 74278 as yet unmatched pairs. 26661 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 2s. Last read position: chr22:36,326,592
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 73135 as yet unmatched pairs. 25513 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr22:37,805,773
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 68404 as yet unmatched pairs. 20782 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chr22:39,230,113
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 65576 as yet unmatched pairs. 17950 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr22:41,252,877
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 62554 as yet unmatched pairs. 14924 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chr22:42,876,227
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 59989 as yet unmatched pairs. 12353 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chr22:46,534,155
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 57480 as yet unmatched pairs. 9839 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chr22:50,280,556
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 53478 as yet unmatched pairs. 5833 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chr22:50,526,131
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 50235 as yet unmatched pairs. 2590 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 2s. Last read position: chrX:3,309,818
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 47356 as yet unmatched pairs. 42593 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chrX:15,561,255
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 43823 as yet unmatched pairs. 39060 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chrX:37,806,524
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 41513 as yet unmatched pairs. 36740 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chrX:47,186,129
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 39028 as yet unmatched pairs. 34255 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chrX:48,909,885
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 36134 as yet unmatched pairs. 31361 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chrX:52,515,503
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 33815 as yet unmatched pairs. 29042 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chrX:53,628,515
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 31523 as yet unmatched pairs. 26750 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chrX:70,302,332
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 28604 as yet unmatched pairs. 23831 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chrX:75,075,478
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 26183 as yet unmatched pairs. 21407 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 1s. Last read position: chrX:96,685,120
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 23984 as yet unmatched pairs. 19206 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: chrX:111,724,931
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 21544 as yet unmatched pairs. 16766 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 1s. Last read position: chrX:124,063,170
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 19187 as yet unmatched pairs. 14408 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 1s. Last read position: chrX:149,496,466
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 17144 as yet unmatched pairs. 12365 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chrX:153,951,376
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 14069 as yet unmatched pairs. 9290 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chrX:154,354,924
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 12298 as yet unmatched pairs. 7519 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 1s. Last read position: chrX:154,366,815
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 10063 as yet unmatched pairs. 5284 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 1s. Last read position: chrX:154,887,052
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 5296 as yet unmatched pairs. 517 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,488
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 3464 as yet unmatched pairs. 1406 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,047
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 1047 as yet unmatched pairs. 998 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 632776395 records. 0 pairs never matched.
INFO 2026-06-08 08:59:06 MarkDuplicates After buildSortedReadEndLists freeMemory: 204138216; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:59:06 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:59:11 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:59:11 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder Large duplicate set. size = 1353
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,576
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,783
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,801
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder Large duplicate set. size = 1178
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,908
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder Large duplicate set. size = 1191
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,962
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder Large duplicate set. size = 1565
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,812
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,099
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,086
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,223
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder Large duplicate set. size = 2900
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,634
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,215
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder Large duplicate set. size = 1543
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,059
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 08:59:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,446
INFO 2026-06-08 08:59:22 OpticalDuplicateFinder Large duplicate set. size = 1543
INFO 2026-06-08 08:59:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,049
INFO 2026-06-08 08:59:22 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 08:59:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,173
INFO 2026-06-08 08:59:22 OpticalDuplicateFinder Large duplicate set. size = 1294
INFO 2026-06-08 08:59:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,540
INFO 2026-06-08 08:59:22 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 08:59:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,296
INFO 2026-06-08 08:59:23 OpticalDuplicateFinder Large duplicate set. size = 1500
INFO 2026-06-08 08:59:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,677
INFO 2026-06-08 08:59:23 OpticalDuplicateFinder Large duplicate set. size = 1058
INFO 2026-06-08 08:59:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,835
INFO 2026-06-08 08:59:27 OpticalDuplicateFinder Large duplicate set. size = 1248
INFO 2026-06-08 08:59:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,688
INFO 2026-06-08 08:59:27 OpticalDuplicateFinder Large duplicate set. size = 1253
INFO 2026-06-08 08:59:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,456
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder Large duplicate set. size = 2202
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,844
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,350
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,482
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder Large duplicate set. size = 1203
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,505
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,734
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder Large duplicate set. size = 1301
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,397
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder Large duplicate set. size = 1663
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,047
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder Large duplicate set. size = 1451
INFO 2026-06-08 08:59:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,589
INFO 2026-06-08 08:59:31 OpticalDuplicateFinder Large duplicate set. size = 1192
INFO 2026-06-08 08:59:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,118
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,092
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder Large duplicate set. size = 1540
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,656
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder Large duplicate set. size = 1520
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,028
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder Large duplicate set. size = 1225
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,403
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder Large duplicate set. size = 2127
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,721
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,803
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder Large duplicate set. size = 1126
INFO 2026-06-08 08:59:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,793
INFO 2026-06-08 08:59:36 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-08 08:59:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,556
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder Large duplicate set. size = 1129
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,792
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder Large duplicate set. size = 2208
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,237
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,974
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder Large duplicate set. size = 1311
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,647
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,839
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder Large duplicate set. size = 1383
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,539
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder Large duplicate set. size = 1758
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,600
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder Large duplicate set. size = 1708
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,225
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder Large duplicate set. size = 2245
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,701
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,469
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,504
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,430
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 09:00:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,292
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder Large duplicate set. size = 1440
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,223
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,221
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder Large duplicate set. size = 1327
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,081
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder Large duplicate set. size = 1323
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,958
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder Large duplicate set. size = 1137
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,836
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder Large duplicate set. size = 1422
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,424
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder Large duplicate set. size = 1488
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,488
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,641
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder Large duplicate set. size = 1403
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,406
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 09:00:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,485
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,170
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,500
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,550
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1471
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,148
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1222
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,173
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1206
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,463
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,073
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1079
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,509
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1550
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,105
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,290
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1267
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,461
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1388
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,825
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,441
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,979
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,831
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 09:00:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,073
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1344
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,200
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1656
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,914
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 2524
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,874
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,925
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 2052
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,802
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,509
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1241
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,540
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1932
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,430
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,044
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 2024
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,812
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,070
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,993
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1773
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,547
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1854
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,210
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1101
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,721
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1221
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,191
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,154
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1197
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,149
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,334
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder Large duplicate set. size = 1223
INFO 2026-06-08 09:00:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,200
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,543
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1367
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,912
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1515
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,166
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,913
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1724
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,020
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 2255
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,760
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,696
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1439
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,860
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,517
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 2409
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,706
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,389
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 2263
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,488
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,561
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1859
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,023
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1804
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,766
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 2026
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,548
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,362
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,460
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1375
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,691
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1685
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,252
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,277
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 2681
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,590
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,998
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 3203
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,564
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,678
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,022
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,166
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1424
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,742
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1600
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,573
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,109
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1391
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,370
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 2317
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,890
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,930
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1337
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,086
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1911
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,458
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1325
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,362
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 2503
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,581
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,835
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 3806
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,061
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,646
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,284
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1252
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,235
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 2132
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,823
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,552
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1162
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,080
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 4369
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,472
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,558
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,112
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,276
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1821
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,239
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1298
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,516
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1412
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,919
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 2345
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,052
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,746
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1855
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,325
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 3314
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,180
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,392
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,105
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 2529
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,881
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,305
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 7520
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,810
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,841
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,525
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,814
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,855
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 6,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,834
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder compared 7,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,202
INFO 2026-06-08 09:00:05 OpticalDuplicateFinder Large duplicate set. size = 1547
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,125
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1705
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,198
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 2057
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,008
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,296
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 9184
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,716
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,086
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,713
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,655
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,140
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 6,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,749
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 7,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,543
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 8,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,703
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 9,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,586
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,175
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 2912
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,540
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,666
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 3867
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,529
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,098
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,855
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1346
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,516
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 4690
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,217
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,480
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,603
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,585
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 3201
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,350
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,388
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,708
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,971
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1711
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,631
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1205
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,196
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1233
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,998
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1794
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,569
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1640
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,492
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 4005
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,708
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,778
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,219
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,422
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1287
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,088
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1315
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,377
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,004
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1643
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,951
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1919
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,006
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1290
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,640
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1631
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,464
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1203
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,771
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 2616
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,109
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,414
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 3584
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,564
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,174
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,425
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,654
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1543
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,305
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1797
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,983
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1261
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,900
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1551
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,225
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,226
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1903
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,141
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 2445
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,610
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,379
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,430
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1222
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,349
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,294
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1174
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,362
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1555
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,391
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,100
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 2740
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,738
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,585
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 3277
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,105
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,713
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,430
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,877
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1543
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,580
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1778
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,192
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1330
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,793
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1672
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,465
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1556
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,874
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1973
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,061
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,312
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,233
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1153
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,874
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1260
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,496
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1089
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,313
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1432
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,492
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder Large duplicate set. size = 1015
INFO 2026-06-08 09:00:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,171
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 4139
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,637
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,328
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,076
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,546
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1539
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,653
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,365
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1705
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,297
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,550
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1314
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,219
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 3779
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,847
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,239
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,601
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1506
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,231
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,128
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1636
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,040
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,447
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1518
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,386
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1576
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,744
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,677
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,267
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1100
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,433
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,133
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1130
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,104
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1633
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,604
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1624
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,615
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,464
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,328
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,588
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,602
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1202
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,199
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,985
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1360
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,387
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 2013
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,814
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,877
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 4369
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,767
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,014
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,126
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,924
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 2478
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,495
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,349
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1397
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,953
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1438
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,814
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,614
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1369
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,551
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1545
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,900
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1518
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,727
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,845
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1783
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,241
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1935
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,875
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1863
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,638
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,335
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1235
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,447
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,882
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1172
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,409
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1277
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,495
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,302
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,116
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1692
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,281
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1327
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,200
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder Large duplicate set. size = 1458
INFO 2026-06-08 09:00:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,969
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,854
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1259
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,777
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1015
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,599
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1496
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,011
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1927
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,192
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1375
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,102
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1644
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,569
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1614
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,442
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1345
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,391
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,256
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,327
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,376
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 09:00:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,476
INFO 2026-06-08 09:00:38 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:00:38 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:01:42 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:01:42 MarkDuplicates After generateDuplicateIndexes freeMemory: 203846696; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:01:42 MarkDuplicates Marking 271353634 records as duplicates.
INFO 2026-06-08 09:01:42 MarkDuplicates Found 9295920 optical duplicate clusters.
INFO 2026-06-08 09:01:42 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:02:00 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:22,639,380
INFO 2026-06-08 09:02:16 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 16s. Last read position: chr1:43,605,288
INFO 2026-06-08 09:02:33 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:119,997,219
INFO 2026-06-08 09:02:49 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:07s. Time for last 10,000,000: 16s. Last read position: chr1:156,479,666
INFO 2026-06-08 09:03:05 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:23s. Time for last 10,000,000: 16s. Last read position: chr1:209,617,921
INFO 2026-06-08 09:03:21 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:39s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,253
INFO 2026-06-08 09:03:39 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:56s. Time for last 10,000,000: 17s. Last read position: chr2:69,328,392
INFO 2026-06-08 09:03:55 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:13s. Time for last 10,000,000: 16s. Last read position: chr2:127,505,378
INFO 2026-06-08 09:04:12 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:30s. Time for last 10,000,000: 16s. Last read position: chr2:191,386,060
INFO 2026-06-08 09:04:28 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:45s. Time for last 10,000,000: 15s. Last read position: chr2:215,391,740
INFO 2026-06-08 09:04:44 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:01s. Time for last 10,000,000: 15s. Last read position: chr2:231,138,740
INFO 2026-06-08 09:05:00 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:17s. Time for last 10,000,000: 15s. Last read position: chr3:43,080,760
INFO 2026-06-08 09:05:15 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:33s. Time for last 10,000,000: 15s. Last read position: chr3:112,638,901
INFO 2026-06-08 09:05:32 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:49s. Time for last 10,000,000: 16s. Last read position: chr3:188,609,288
INFO 2026-06-08 09:05:48 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:06s. Time for last 10,000,000: 16s. Last read position: chr4:30,920,315
INFO 2026-06-08 09:06:05 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 16s. Last read position: chr4:122,933,442
INFO 2026-06-08 09:06:22 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:40s. Time for last 10,000,000: 16s. Last read position: chr5:33,576,348
INFO 2026-06-08 09:06:38 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:56s. Time for last 10,000,000: 16s. Last read position: chr5:128,158,049
INFO 2026-06-08 09:06:54 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:12s. Time for last 10,000,000: 16s. Last read position: chr5:150,695,591
INFO 2026-06-08 09:07:11 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:29s. Time for last 10,000,000: 16s. Last read position: chr6:26,452,413
INFO 2026-06-08 09:07:27 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:45s. Time for last 10,000,000: 16s. Last read position: chr6:43,171,951
INFO 2026-06-08 09:07:43 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:01s. Time for last 10,000,000: 16s. Last read position: chr6:138,911,330
INFO 2026-06-08 09:07:59 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:17s. Time for last 10,000,000: 15s. Last read position: chr7:26,196,560
INFO 2026-06-08 09:08:16 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:33s. Time for last 10,000,000: 16s. Last read position: chr7:93,132,204
INFO 2026-06-08 09:08:31 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:49s. Time for last 10,000,000: 15s. Last read position: chr7:128,085,761
INFO 2026-06-08 09:08:47 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:05s. Time for last 10,000,000: 16s. Last read position: chr8:29,188,583
INFO 2026-06-08 09:09:04 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:21s. Time for last 10,000,000: 16s. Last read position: chr8:119,616,273
INFO 2026-06-08 09:09:20 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:37s. Time for last 10,000,000: 15s. Last read position: chr9:14,113,001
INFO 2026-06-08 09:09:36 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:54s. Time for last 10,000,000: 16s. Last read position: chr9:120,536,470
INFO 2026-06-08 09:09:54 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:11s. Time for last 10,000,000: 17s. Last read position: chr10:7,802,771
INFO 2026-06-08 09:10:10 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:27s. Time for last 10,000,000: 16s. Last read position: chr10:86,499,867
INFO 2026-06-08 09:10:26 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:43s. Time for last 10,000,000: 16s. Last read position: chr11:800,154
INFO 2026-06-08 09:10:42 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:59s. Time for last 10,000,000: 15s. Last read position: chr11:33,287,306
INFO 2026-06-08 09:10:58 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:15s. Time for last 10,000,000: 16s. Last read position: chr11:65,121,510
INFO 2026-06-08 09:11:14 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:32s. Time for last 10,000,000: 16s. Last read position: chr11:105,034,383
INFO 2026-06-08 09:11:32 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:49s. Time for last 10,000,000: 17s. Last read position: chr12:8,096,061
INFO 2026-06-08 09:11:48 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:06s. Time for last 10,000,000: 16s. Last read position: chr12:54,281,483
INFO 2026-06-08 09:12:04 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:22s. Time for last 10,000,000: 16s. Last read position: chr12:101,765,155
INFO 2026-06-08 09:12:20 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:38s. Time for last 10,000,000: 15s. Last read position: chr12:133,156,756
INFO 2026-06-08 09:12:36 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:54s. Time for last 10,000,000: 15s. Last read position: chr14:22,841,503
INFO 2026-06-08 09:12:52 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:10s. Time for last 10,000,000: 16s. Last read position: chr14:75,280,119
INFO 2026-06-08 09:13:09 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:26s. Time for last 10,000,000: 16s. Last read position: chr14:105,854,522
INFO 2026-06-08 09:13:25 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 16s. Last read position: chr15:67,181,245
INFO 2026-06-08 09:13:41 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:59s. Time for last 10,000,000: 16s. Last read position: chr16:2,102,869
INFO 2026-06-08 09:13:57 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:15s. Time for last 10,000,000: 15s. Last read position: chr16:18,869,943
INFO 2026-06-08 09:14:13 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:31s. Time for last 10,000,000: 16s. Last read position: chr16:29,530,113
INFO 2026-06-08 09:14:29 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:47s. Time for last 10,000,000: 16s. Last read position: chr16:68,678,781
INFO 2026-06-08 09:14:46 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:03s. Time for last 10,000,000: 16s. Last read position: chr17:7,579,808
INFO 2026-06-08 09:15:02 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:19s. Time for last 10,000,000: 16s. Last read position: chr17:38,720,664
INFO 2026-06-08 09:15:18 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:35s. Time for last 10,000,000: 16s. Last read position: chr17:50,185,823
INFO 2026-06-08 09:15:34 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:52s. Time for last 10,000,000: 16s. Last read position: chr17:50,191,803
INFO 2026-06-08 09:15:50 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:08s. Time for last 10,000,000: 15s. Last read position: chr17:50,199,241
INFO 2026-06-08 09:16:06 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:24s. Time for last 10,000,000: 16s. Last read position: chr17:75,727,490
INFO 2026-06-08 09:16:22 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:40s. Time for last 10,000,000: 15s. Last read position: chr18:11,066,190
INFO 2026-06-08 09:16:38 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:56s. Time for last 10,000,000: 16s. Last read position: chr19:6,709,824
INFO 2026-06-08 09:16:54 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:12s. Time for last 10,000,000: 15s. Last read position: chr19:23,827,534
INFO 2026-06-08 09:17:10 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:27s. Time for last 10,000,000: 15s. Last read position: chr19:49,599,516
INFO 2026-06-08 09:17:26 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:43s. Time for last 10,000,000: 15s. Last read position: chr20:35,738,967
INFO 2026-06-08 09:17:42 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:00s. Time for last 10,000,000: 16s. Last read position: chr21:8,216,094
INFO 2026-06-08 09:17:59 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:16s. Time for last 10,000,000: 16s. Last read position: chr22:23,253,876
INFO 2026-06-08 09:18:15 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:32s. Time for last 10,000,000: 15s. Last read position: chr22:42,876,227
INFO 2026-06-08 09:18:30 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:48s. Time for last 10,000,000: 15s. Last read position: chrX:53,628,515
INFO 2026-06-08 09:18:48 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:05s. Time for last 10,000,000: 17s. Last read position: chrX:154,887,052
INFO 2026-06-08 09:19:01 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:19:01 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:19:01 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:19:01 MarkDuplicates Before output close freeMemory: 203817944; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:19:01 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:19:01 MarkDuplicates After output close freeMemory: 104058176; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:19:01 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.17 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory