Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/79f2ee20265826ac4851590a8a03fe/fi_workdir/659_cRa-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/c02f404af57d63ac7be93c70e5fb9d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/c02f404af57d63ac7be93c70e5fb9d/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 7581
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 7581
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:7581
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AFF1--C4orf36 HAVANA gene 35401 41196 . + . FI_gene_label "C4orf36^ENSG00000163633.12" ; ID "AFF1--C4orf36^C4orf36^ENSG00000163633.12" ; ccdsid "CCDS3615.1" ; exon_id "ENSE00003815117.1" ; exon_number 2 ; gene_id "AFF1--C4orf36^C4orf36^ENSG00000163633.12" ; gene_name C4orf36 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130597.5" ; havana_transcript "OTTHUMT00000253044.2" ; hgnc_id "HGNC:28386" ; level 2 ; orig_coord_info "chr4,86891456,86891520,-" ; protein_id "ENSP00000295898.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AFF1--C4orf36^ENST00000295898.8" ; transcript_name "C4orf36-201" ; transcript_support_level 1 ; transcript_type protein_coding
AFF1--C4orf36 HAVANA mRNA 35401 41196 . + . FI_gene_label "C4orf36^ENSG00000163633.12" ; ID "AFF1--C4orf36^ENST00000295898.8" ; Parent "AFF1--C4orf36^C4orf36^ENSG00000163633.12" ; ccdsid "CCDS3615.1" ; exon_id "ENSE00003815117.1" ; exon_number 2 ; gene_id "AFF1--C4orf36^C4orf36^ENSG00000163633.12" ; gene_name C4orf36 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130597.5" ; havana_transcript "OTTHUMT00000253044.2" ; hgnc_id "HGNC:28386" ; level 2 ; orig_coord_info "chr4,86891456,86891520,-" ; protein_id "ENSP00000295898.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AFF1--C4orf36^ENST00000295898.8" ; transcript_name "C4orf36-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AFF1--C4orf36 HAVANA gene 5860 32384 . + . FI_gene_label "AFF1^ENSG00000172493.22" ; ID "AFF1--C4orf36^AFF1^ENSG00000172493.22" ; ccdsid "CCDS3616.1" ; exon_id "ENSE00001150935.3" ; exon_number 1 ; gene_id "AFF1--C4orf36^AFF1^ENSG00000172493.22" ; gene_name AFF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130603.9" ; havana_transcript "OTTHUMT00000253053.3" ; hgnc_id "HGNC:7135" ; level 2 ; orig_coord_info "chr4,87007408,87007424,+" ; protein_id "ENSP00000305689.6" ; tag basic appris_principal_4 CCDS ; transcript_id "AFF1--C4orf36^ENST00000307808.10" ; transcript_name "AFF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AFF1--C4orf36 HAVANA mRNA 5860 32384 . + . FI_gene_label "AFF1^ENSG00000172493.22" ; ID "AFF1--C4orf36^ENST00000307808.10" ; Parent "AFF1--C4orf36^AFF1^ENSG00000172493.22" ; ccdsid "CCDS3616.1" ; exon_id "ENSE00001150935.3" ; exon_number 1 ; gene_id "AFF1--C4orf36^AFF1^ENSG00000172493.22" ; gene_name AFF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130603.9" ; havana_transcript "OTTHUMT00000253053.3" ; hgnc_id "HGNC:7135" ; level 2 ; orig_coord_info "chr4,87007408,87007424,+" ; protein_id "ENSP00000305689.6" ; tag basic appris_principal_4 CCDS ; transcript_id "AFF1--C4orf36^ENST00000307808.10" ; transcript_name "AFF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C2CD5--PTPRD HAVANA gene 1001 32969 . + . FI_gene_label "C2CD5^ENSG00000111731.12" ; ID "C2CD5--PTPRD^C2CD5^ENSG00000111731.12" ; ccdsid "CCDS31758.1" ; exon_id "ENSE00003632309.1" ; exon_number 2 ; gene_id "C2CD5--PTPRD^C2CD5^ENSG00000111731.12" ; gene_name C2CD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169100.3" ; havana_transcript "OTTHUMT00000402257.1" ; hgnc_id "HGNC:29062" ; level 2 ; orig_coord_info "chr12,22544061,22544150,-" ; protein_id "ENSP00000334229.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "C2CD5--PTPRD^ENST00000333957.8" ; transcript_name "C2CD5-201" ; transcript_support_level 1 ; transcript_type protein_coding
C2CD5--PTPRD HAVANA mRNA 1001 32969 . + . FI_gene_label "C2CD5^ENSG00000111731.12" ; ID "C2CD5--PTPRD^ENST00000333957.8" ; Parent "C2CD5--PTPRD^C2CD5^ENSG00000111731.12" ; ccdsid "CCDS31758.1" ; exon_id "ENSE00003632309.1" ; exon_number 2 ; gene_id "C2CD5--PTPRD^C2CD5^ENSG00000111731.12" ; gene_name C2CD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169100.3" ; havana_transcript "OTTHUMT00000402257.1" ; hgnc_id "HGNC:29062" ; level 2 ; orig_coord_info "chr12,22544061,22544150,-" ; protein_id "ENSP00000334229.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "C2CD5--PTPRD^ENST00000333957.8" ; transcript_name "C2CD5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C2CD5--PTPRD ENSEMBL gene 49006 93900 . + . FI_gene_label "PTPRD^ENSG00000153707.17" ; ID "C2CD5--PTPRD^PTPRD^ENSG00000153707.17" ; ccdsid "CCDS55290.1" ; exon_id "ENSE00001254389.3" ; exon_number 1 ; gene_id "C2CD5--PTPRD^PTPRD^ENSG00000153707.17" ; gene_name PTPRD ; gene_type protein_coding ; havana_gene "OTTHUMG00000021005.6" ; hgnc_id "HGNC:9668" ; level 3 ; orig_coord_info "chr9,8733780,8733843,-" ; protein_id "ENSP00000347373.5" ; tag basic CCDS ; transcript_id "C2CD5--PTPRD^ENST00000355233.9" ; transcript_name "PTPRD-201" ; transcript_support_level 1 ; transcript_type protein_coding
C2CD5--PTPRD ENSEMBL mRNA 49006 93900 . + . FI_gene_label "PTPRD^ENSG00000153707.17" ; ID "C2CD5--PTPRD^ENST00000355233.9" ; Parent "C2CD5--PTPRD^PTPRD^ENSG00000153707.17" ; ccdsid "CCDS55290.1" ; exon_id "ENSE00001254389.3" ; exon_number 1 ; gene_id "C2CD5--PTPRD^PTPRD^ENSG00000153707.17" ; gene_name PTPRD ; gene_type protein_coding ; havana_gene "OTTHUMG00000021005.6" ; hgnc_id "HGNC:9668" ; level 3 ; orig_coord_info "chr9,8733780,8733843,-" ; protein_id "ENSP00000347373.5" ; tag basic CCDS ; transcript_id "C2CD5--PTPRD^ENST00000355233.9" ; transcript_name "PTPRD-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC12--CCDC12P1 ENSEMBL gene 1001 11603 . + . FI_gene_label "CCDC12^ENSG00000160799.11" ; ID "CCDC12--CCDC12P1^CCDC12^ENSG00000160799.11" ; ccdsid "CCDS63612.1" ; exon_id "ENSE00001604390.1" ; exon_number 2 ; gene_id "CCDC12--CCDC12P1^CCDC12^ENSG00000160799.11" ; gene_name CCDC12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133513.5" ; hgnc_id "HGNC:28332" ; level 3 ; orig_coord_info "chr3,46976637,46976771,-" ; protein_id "ENSP00000292314.2" ; tag basic CCDS ; transcript_id "CCDC12--CCDC12P1^ENST00000292314.6" ; transcript_name "CCDC12-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC12--CCDC12P1 ENSEMBL mRNA 1001 11603 . + . FI_gene_label "CCDC12^ENSG00000160799.11" ; ID "CCDC12--CCDC12P1^ENST00000292314.6" ; Parent "CCDC12--CCDC12P1^CCDC12^ENSG00000160799.11" ; ccdsid "CCDS63612.1" ; exon_id "ENSE00001604390.1" ; exon_number 2 ; gene_id "CCDC12--CCDC12P1^CCDC12^ENSG00000160799.11" ; gene_name CCDC12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133513.5" ; hgnc_id "HGNC:28332" ; level 3 ; orig_coord_info "chr3,46976637,46976771,-" ; protein_id "ENSP00000292314.2" ; tag basic CCDS ; transcript_id "CCDC12--CCDC12P1^ENST00000292314.6" ; transcript_name "CCDC12-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ERC1--GLI1 HAVANA gene 44808 54976 . + . FI_gene_label "GLI1^ENSG00000111087.10" ; ID "ERC1--GLI1^GLI1^ENSG00000111087.10" ; ccdsid "CCDS8940.1" ; exon_id "ENSE00002313701.1" ; exon_number 2 ; gene_id "ERC1--GLI1^GLI1^ENSG00000111087.10" ; gene_name GLI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167332.3" ; havana_transcript "OTTHUMT00000394197.2" ; hgnc_id "HGNC:4317" ; level 2 ; orig_coord_info "chr12,57463692,57463791,+" ; protein_id "ENSP00000228682.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERC1--GLI1^ENST00000228682.7" ; transcript_name "GLI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERC1--GLI1 HAVANA mRNA 44808 54976 . + . FI_gene_label "GLI1^ENSG00000111087.10" ; ID "ERC1--GLI1^ENST00000228682.7" ; Parent "ERC1--GLI1^GLI1^ENSG00000111087.10" ; ccdsid "CCDS8940.1" ; exon_id "ENSE00002313701.1" ; exon_number 2 ; gene_id "ERC1--GLI1^GLI1^ENSG00000111087.10" ; gene_name GLI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167332.3" ; havana_transcript "OTTHUMT00000394197.2" ; hgnc_id "HGNC:4317" ; level 2 ; orig_coord_info "chr12,57463692,57463791,+" ; protein_id "ENSP00000228682.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERC1--GLI1^ENST00000228682.7" ; transcript_name "GLI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERC1--GLI1 HAVANA gene 1730 37441 . + . FI_gene_label "ERC1^ENSG00000082805.20" ; ID "ERC1--GLI1^ERC1^ENSG00000082805.20" ; exon_id "ENSE00001318114.5" ; exon_number 2 ; gene_id "ERC1--GLI1^ERC1^ENSG00000082805.20" ; gene_name ERC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130138.14" ; havana_transcript "OTTHUMT00000398378.1" ; hgnc_id "HGNC:17072" ; level 2 ; orig_coord_info "chr12,1027904,1028572,+" ; protein_id "ENSP00000340054.6" ; transcript_id "ERC1--GLI1^ENST00000347735.10" ; transcript_name "ERC1-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
ERC1--GLI1 HAVANA mRNA 1730 37441 . + . FI_gene_label "ERC1^ENSG00000082805.20" ; ID "ERC1--GLI1^ENST00000347735.10" ; Parent "ERC1--GLI1^ERC1^ENSG00000082805.20" ; exon_id "ENSE00001318114.5" ; exon_number 2 ; gene_id "ERC1--GLI1^ERC1^ENSG00000082805.20" ; gene_name ERC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130138.14" ; havana_transcript "OTTHUMT00000398378.1" ; hgnc_id "HGNC:17072" ; level 2 ; orig_coord_info "chr12,1027904,1028572,+" ; protein_id "ENSP00000340054.6" ; transcript_id "ERC1--GLI1^ENST00000347735.10" ; transcript_name "ERC1-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
GLI1--SCNN1A HAVANA gene 1001 11169 . + . FI_gene_label "GLI1^ENSG00000111087.10" ; ID "GLI1--SCNN1A^GLI1^ENSG00000111087.10" ; ccdsid "CCDS8940.1" ; exon_id "ENSE00002313701.1" ; exon_number 2 ; gene_id "GLI1--SCNN1A^GLI1^ENSG00000111087.10" ; gene_name GLI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167332.3" ; havana_transcript "OTTHUMT00000394197.2" ; hgnc_id "HGNC:4317" ; level 2 ; orig_coord_info "chr12,57463692,57463791,+" ; protein_id "ENSP00000228682.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GLI1--SCNN1A^ENST00000228682.7" ; transcript_name "GLI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GLI1--SCNN1A HAVANA mRNA 1001 11169 . + . FI_gene_label "GLI1^ENSG00000111087.10" ; ID "GLI1--SCNN1A^ENST00000228682.7" ; Parent "GLI1--SCNN1A^GLI1^ENSG00000111087.10" ; ccdsid "CCDS8940.1" ; exon_id "ENSE00002313701.1" ; exon_number 2 ; gene_id "GLI1--SCNN1A^GLI1^ENSG00000111087.10" ; gene_name GLI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167332.3" ; havana_transcript "OTTHUMT00000394197.2" ; hgnc_id "HGNC:4317" ; level 2 ; orig_coord_info "chr12,57463692,57463791,+" ; protein_id "ENSP00000228682.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GLI1--SCNN1A^ENST00000228682.7" ; transcript_name "GLI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GLI1--SCNN1A HAVANA gene 16210 28159 . + . FI_gene_label "SCNN1A^ENSG00000111319.13" ; ID "GLI1--SCNN1A^SCNN1A^ENSG00000111319.13" ; ccdsid "CCDS8543.1" ; exon_id "ENSE00003515810.1" ; exon_number 2 ; gene_id "GLI1--SCNN1A^SCNN1A^ENSG00000111319.13" ; gene_name SCNN1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000168268.3" ; havana_transcript "OTTHUMT00000399055.2" ; hgnc_id "HGNC:10599" ; level 2 ; orig_coord_info "chr12,6374368,6374783,-" ; protein_id "ENSP00000228916.2" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "GLI1--SCNN1A^ENST00000228916.7" ; transcript_name "SCNN1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
GLI1--SCNN1A HAVANA mRNA 16210 28159 . + . FI_gene_label "SCNN1A^ENSG00000111319.13" ; ID "GLI1--SCNN1A^ENST00000228916.7" ; Parent "GLI1--SCNN1A^SCNN1A^ENSG00000111319.13" ; ccdsid "CCDS8543.1" ; exon_id "ENSE00003515810.1" ; exon_number 2 ; gene_id "GLI1--SCNN1A^SCNN1A^ENSG00000111319.13" ; gene_name SCNN1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000168268.3" ; havana_transcript "OTTHUMT00000399055.2" ; hgnc_id "HGNC:10599" ; level 2 ; orig_coord_info "chr12,6374368,6374783,-" ; protein_id "ENSP00000228916.2" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "GLI1--SCNN1A^ENST00000228916.7" ; transcript_name "SCNN1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LEMD3--GRIP1 HAVANA gene 1001 14319 . + . FI_gene_label "LEMD3^ENSG00000174106.3" ; ID "LEMD3--GRIP1^LEMD3^ENSG00000174106.3" ; ccdsid "CCDS8972.1" ; exon_id "ENSE00001208170.3" ; exon_number 1 ; gene_id "LEMD3--GRIP1^LEMD3^ENSG00000174106.3" ; gene_name LEMD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168840.3" ; havana_transcript "OTTHUMT00000401312.3" ; hgnc_id "HGNC:28887" ; level 2 ; orig_coord_info "chr12,65169597,65171118,+" ; protein_id "ENSP00000308369.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LEMD3--GRIP1^ENST00000308330.3" ; transcript_name "LEMD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
LEMD3--GRIP1 HAVANA mRNA 1001 14319 . + . FI_gene_label "LEMD3^ENSG00000174106.3" ; ID "LEMD3--GRIP1^ENST00000308330.3" ; Parent "LEMD3--GRIP1^LEMD3^ENSG00000174106.3" ; ccdsid "CCDS8972.1" ; exon_id "ENSE00001208170.3" ; exon_number 1 ; gene_id "LEMD3--GRIP1^LEMD3^ENSG00000174106.3" ; gene_name LEMD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168840.3" ; havana_transcript "OTTHUMT00000401312.3" ; hgnc_id "HGNC:28887" ; level 2 ; orig_coord_info "chr12,65169597,65171118,+" ; protein_id "ENSP00000308369.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LEMD3--GRIP1^ENST00000308330.3" ; transcript_name "LEMD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LEMD3--GRIP1 HAVANA gene 20836 53333 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "LEMD3--GRIP1^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "LEMD3--GRIP1^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "LEMD3--GRIP1^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
LEMD3--GRIP1 HAVANA mRNA 20836 53333 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "LEMD3--GRIP1^ENST00000359742.9" ; Parent "LEMD3--GRIP1^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "LEMD3--GRIP1^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "LEMD3--GRIP1^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NCAPD2--AC025578.1 HAVANA gene 1747 20188 . + . FI_gene_label "NCAPD2^ENSG00000010292.13" ; ID "NCAPD2--AC025578.1^NCAPD2^ENSG00000010292.13" ; ccdsid "CCDS8548.1" ; exon_id "ENSE00003508626.1" ; exon_number 2 ; gene_id "NCAPD2--AC025578.1^NCAPD2^ENSG00000010292.13" ; gene_name NCAPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168513.3" ; havana_transcript "OTTHUMT00000399964.2" ; hgnc_id "HGNC:24305" ; level 2 ; orig_coord_info "chr12,6495099,6495225,+" ; protein_id "ENSP00000325017.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NCAPD2--AC025578.1^ENST00000315579.10" ; transcript_name "NCAPD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NCAPD2--AC025578.1 HAVANA mRNA 1747 20188 . + . FI_gene_label "NCAPD2^ENSG00000010292.13" ; ID "NCAPD2--AC025578.1^ENST00000315579.10" ; Parent "NCAPD2--AC025578.1^NCAPD2^ENSG00000010292.13" ; ccdsid "CCDS8548.1" ; exon_id "ENSE00003508626.1" ; exon_number 2 ; gene_id "NCAPD2--AC025578.1^NCAPD2^ENSG00000010292.13" ; gene_name NCAPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168513.3" ; havana_transcript "OTTHUMT00000399964.2" ; hgnc_id "HGNC:24305" ; level 2 ; orig_coord_info "chr12,6495099,6495225,+" ; protein_id "ENSP00000325017.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NCAPD2--AC025578.1^ENST00000315579.10" ; transcript_name "NCAPD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NCAPD2--ERVK-28 HAVANA gene 1747 20188 . + . FI_gene_label "NCAPD2^ENSG00000010292.13" ; ID "NCAPD2--ERVK-28^NCAPD2^ENSG00000010292.13" ; ccdsid "CCDS8548.1" ; exon_id "ENSE00003508626.1" ; exon_number 2 ; gene_id "NCAPD2--ERVK-28^NCAPD2^ENSG00000010292.13" ; gene_name NCAPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168513.3" ; havana_transcript "OTTHUMT00000399964.2" ; hgnc_id "HGNC:24305" ; level 2 ; orig_coord_info "chr12,6495099,6495225,+" ; protein_id "ENSP00000325017.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NCAPD2--ERVK-28^ENST00000315579.10" ; transcript_name "NCAPD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NCAPD2--ERVK-28 HAVANA mRNA 1747 20188 . + . FI_gene_label "NCAPD2^ENSG00000010292.13" ; ID "NCAPD2--ERVK-28^ENST00000315579.10" ; Parent "NCAPD2--ERVK-28^NCAPD2^ENSG00000010292.13" ; ccdsid "CCDS8548.1" ; exon_id "ENSE00003508626.1" ; exon_number 2 ; gene_id "NCAPD2--ERVK-28^NCAPD2^ENSG00000010292.13" ; gene_name NCAPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168513.3" ; havana_transcript "OTTHUMT00000399964.2" ; hgnc_id "HGNC:24305" ; level 2 ; orig_coord_info "chr12,6495099,6495225,+" ; protein_id "ENSP00000325017.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NCAPD2--ERVK-28^ENST00000315579.10" ; transcript_name "NCAPD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NCAPD2--RPL21P103 HAVANA gene 1747 20188 . + . FI_gene_label "NCAPD2^ENSG00000010292.13" ; ID "NCAPD2--RPL21P103^NCAPD2^ENSG00000010292.13" ; ccdsid "CCDS8548.1" ; exon_id "ENSE00003508626.1" ; exon_number 2 ; gene_id "NCAPD2--RPL21P103^NCAPD2^ENSG00000010292.13" ; gene_name NCAPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168513.3" ; havana_transcript "OTTHUMT00000399964.2" ; hgnc_id "HGNC:24305" ; level 2 ; orig_coord_info "chr12,6495099,6495225,+" ; protein_id "ENSP00000325017.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NCAPD2--RPL21P103^ENST00000315579.10" ; transcript_name "NCAPD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NCAPD2--RPL21P103 HAVANA mRNA 1747 20188 . + . FI_gene_label "NCAPD2^ENSG00000010292.13" ; ID "NCAPD2--RPL21P103^ENST00000315579.10" ; Parent "NCAPD2--RPL21P103^NCAPD2^ENSG00000010292.13" ; ccdsid "CCDS8548.1" ; exon_id "ENSE00003508626.1" ; exon_number 2 ; gene_id "NCAPD2--RPL21P103^NCAPD2^ENSG00000010292.13" ; gene_name NCAPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168513.3" ; havana_transcript "OTTHUMT00000399964.2" ; hgnc_id "HGNC:24305" ; level 2 ; orig_coord_info "chr12,6495099,6495225,+" ; protein_id "ENSP00000325017.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NCAPD2--RPL21P103^ENST00000315579.10" ; transcript_name "NCAPD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NLRP2--ADAMTS13 HAVANA gene 3577 21684 . + . FI_gene_label "NLRP2^ENSG00000022556.16" ; ID "NLRP2--ADAMTS13^NLRP2^ENSG00000022556.16" ; ccdsid "CCDS86807.1" ; exon_id "ENSE00003505640.1" ; exon_number 2 ; gene_id "NLRP2--ADAMTS13^NLRP2^ENSG00000022556.16" ; gene_name NLRP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167763.7" ; havana_transcript "OTTHUMT00000396158.1" ; hgnc_id "HGNC:22948" ; level 2 ; orig_coord_info "chr19,54970016,54970295,+" ; protein_id "ENSP00000263437.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "NLRP2--ADAMTS13^ENST00000263437.10" ; transcript_name "NLRP2-201" ; transcript_support_level 2 ; transcript_type protein_coding
NLRP2--ADAMTS13 HAVANA mRNA 3577 21684 . + . FI_gene_label "NLRP2^ENSG00000022556.16" ; ID "NLRP2--ADAMTS13^ENST00000263437.10" ; Parent "NLRP2--ADAMTS13^NLRP2^ENSG00000022556.16" ; ccdsid "CCDS86807.1" ; exon_id "ENSE00003505640.1" ; exon_number 2 ; gene_id "NLRP2--ADAMTS13^NLRP2^ENSG00000022556.16" ; gene_name NLRP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167763.7" ; havana_transcript "OTTHUMT00000396158.1" ; hgnc_id "HGNC:22948" ; level 2 ; orig_coord_info "chr19,54970016,54970295,+" ; protein_id "ENSP00000263437.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "NLRP2--ADAMTS13^ENST00000263437.10" ; transcript_name "NLRP2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NLRP2--ADAMTS13 HAVANA gene 26346 51698 . + . FI_gene_label "ADAMTS13^ENSG00000160323.19" ; ID "NLRP2--ADAMTS13^ADAMTS13^ENSG00000160323.19" ; ccdsid "CCDS6972.1" ; exon_id "ENSE00003904238.1" ; exon_number 1 ; gene_id "NLRP2--ADAMTS13^ADAMTS13^ENSG00000160323.19" ; gene_name ADAMTS13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020876.4" ; havana_transcript "OTTHUMT00000054921.1" ; hgnc_id "HGNC:1366" ; level 2 ; orig_coord_info "chr9,133422444,133422548,+" ; protein_id "ENSP00000347927.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NLRP2--ADAMTS13^ENST00000355699.7" ; transcript_name "ADAMTS13-201" ; transcript_support_level 1 ; transcript_type protein_coding
NLRP2--ADAMTS13 HAVANA mRNA 26346 51698 . + . FI_gene_label "ADAMTS13^ENSG00000160323.19" ; ID "NLRP2--ADAMTS13^ENST00000355699.7" ; Parent "NLRP2--ADAMTS13^ADAMTS13^ENSG00000160323.19" ; ccdsid "CCDS6972.1" ; exon_id "ENSE00003904238.1" ; exon_number 1 ; gene_id "NLRP2--ADAMTS13^ADAMTS13^ENSG00000160323.19" ; gene_name ADAMTS13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020876.4" ; havana_transcript "OTTHUMT00000054921.1" ; hgnc_id "HGNC:1366" ; level 2 ; orig_coord_info "chr9,133422444,133422548,+" ; protein_id "ENSP00000347927.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NLRP2--ADAMTS13^ENST00000355699.7" ; transcript_name "ADAMTS13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PARN--AC061997.1 HAVANA gene 2363 42399 . + . FI_gene_label "PARN^ENSG00000140694.17" ; ID "PARN--AC061997.1^PARN^ENSG00000140694.17" ; ccdsid "CCDS45420.1" ; exon_id "ENSE00003684352.1" ; exon_number 4 ; gene_id "PARN--AC061997.1^PARN^ENSG00000140694.17" ; gene_name PARN ; gene_type protein_coding ; havana_gene "OTTHUMG00000173199.14" ; havana_transcript "OTTHUMT00000422385.2" ; hgnc_id "HGNC:8609" ; level 2 ; orig_coord_info "chr16,14627269,14627330,-" ; protein_id "ENSP00000345456.7" ; tag basic CCDS ; transcript_id "PARN--AC061997.1^ENST00000341484.11" ; transcript_name "PARN-201" ; transcript_support_level 2 ; transcript_type protein_coding
PARN--AC061997.1 HAVANA mRNA 2363 42399 . + . FI_gene_label "PARN^ENSG00000140694.17" ; ID "PARN--AC061997.1^ENST00000341484.11" ; Parent "PARN--AC061997.1^PARN^ENSG00000140694.17" ; ccdsid "CCDS45420.1" ; exon_id "ENSE00003684352.1" ; exon_number 4 ; gene_id "PARN--AC061997.1^PARN^ENSG00000140694.17" ; gene_name PARN ; gene_type protein_coding ; havana_gene "OTTHUMG00000173199.14" ; havana_transcript "OTTHUMT00000422385.2" ; hgnc_id "HGNC:8609" ; level 2 ; orig_coord_info "chr16,14627269,14627330,-" ; protein_id "ENSP00000345456.7" ; tag basic CCDS ; transcript_id "PARN--AC061997.1^ENST00000341484.11" ; transcript_name "PARN-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PARN--AC104042.1 HAVANA gene 2363 42399 . + . FI_gene_label "PARN^ENSG00000140694.17" ; ID "PARN--AC104042.1^PARN^ENSG00000140694.17" ; ccdsid "CCDS45420.1" ; exon_id "ENSE00003684352.1" ; exon_number 4 ; gene_id "PARN--AC104042.1^PARN^ENSG00000140694.17" ; gene_name PARN ; gene_type protein_coding ; havana_gene "OTTHUMG00000173199.14" ; havana_transcript "OTTHUMT00000422385.2" ; hgnc_id "HGNC:8609" ; level 2 ; orig_coord_info "chr16,14627269,14627330,-" ; protein_id "ENSP00000345456.7" ; tag basic CCDS ; transcript_id "PARN--AC104042.1^ENST00000341484.11" ; transcript_name "PARN-201" ; transcript_support_level 2 ; transcript_type protein_coding
PARN--AC104042.1 HAVANA mRNA 2363 42399 . + . FI_gene_label "PARN^ENSG00000140694.17" ; ID "PARN--AC104042.1^ENST00000341484.11" ; Parent "PARN--AC104042.1^PARN^ENSG00000140694.17" ; ccdsid "CCDS45420.1" ; exon_id "ENSE00003684352.1" ; exon_number 4 ; gene_id "PARN--AC104042.1^PARN^ENSG00000140694.17" ; gene_name PARN ; gene_type protein_coding ; havana_gene "OTTHUMG00000173199.14" ; havana_transcript "OTTHUMT00000422385.2" ; hgnc_id "HGNC:8609" ; level 2 ; orig_coord_info "chr16,14627269,14627330,-" ; protein_id "ENSP00000345456.7" ; tag basic CCDS ; transcript_id "PARN--AC104042.1^ENST00000341484.11" ; transcript_name "PARN-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^ENST00000427199.3" ; Parent "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^ENST00000456936.4" ; Parent "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UBE2N--MRPL42 HAVANA gene 1001 9541 . + . FI_gene_label "UBE2N^ENSG00000177889.10" ; ID "UBE2N--MRPL42^UBE2N^ENSG00000177889.10" ; ccdsid "CCDS31875.1" ; exon_id "ENSE00001277525.4" ; exon_number 1 ; gene_id "UBE2N--MRPL42^UBE2N^ENSG00000177889.10" ; gene_name UBE2N ; gene_type protein_coding ; havana_gene "OTTHUMG00000170156.5" ; havana_transcript "OTTHUMT00000407710.3" ; hgnc_id "HGNC:12492" ; level 2 ; orig_coord_info "chr12,93441855,93441884,-" ; protein_id "ENSP00000316176.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UBE2N--MRPL42^ENST00000318066.7" ; transcript_name "UBE2N-201" ; transcript_support_level 1 ; transcript_type protein_coding
UBE2N--MRPL42 HAVANA mRNA 1001 9541 . + . FI_gene_label "UBE2N^ENSG00000177889.10" ; ID "UBE2N--MRPL42^ENST00000318066.7" ; Parent "UBE2N--MRPL42^UBE2N^ENSG00000177889.10" ; ccdsid "CCDS31875.1" ; exon_id "ENSE00001277525.4" ; exon_number 1 ; gene_id "UBE2N--MRPL42^UBE2N^ENSG00000177889.10" ; gene_name UBE2N ; gene_type protein_coding ; havana_gene "OTTHUMG00000170156.5" ; havana_transcript "OTTHUMT00000407710.3" ; hgnc_id "HGNC:12492" ; level 2 ; orig_coord_info "chr12,93441855,93441884,-" ; protein_id "ENSP00000316176.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UBE2N--MRPL42^ENST00000318066.7" ; transcript_name "UBE2N-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UBE2N--MRPL42 HAVANA gene 12557 21905 . + . FI_gene_label "MRPL42^ENSG00000198015.14" ; ID "UBE2N--MRPL42^MRPL42^ENSG00000198015.14" ; exon_id "ENSE00003552476.1" ; exon_number 2 ; gene_id "UBE2N--MRPL42^MRPL42^ENSG00000198015.14" ; gene_name MRPL42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170157.4" ; havana_transcript "OTTHUMT00000407720.1" ; hgnc_id "HGNC:14493" ; level 2 ; orig_coord_info "chr12,93469286,93469355,+" ; protein_id "ENSP00000351506.3" ; transcript_id "UBE2N--MRPL42^ENST00000358678.7" ; transcript_name "MRPL42-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
UBE2N--MRPL42 HAVANA mRNA 12557 21905 . + . FI_gene_label "MRPL42^ENSG00000198015.14" ; ID "UBE2N--MRPL42^ENST00000358678.7" ; Parent "UBE2N--MRPL42^MRPL42^ENSG00000198015.14" ; exon_id "ENSE00003552476.1" ; exon_number 2 ; gene_id "UBE2N--MRPL42^MRPL42^ENSG00000198015.14" ; gene_name MRPL42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170157.4" ; havana_transcript "OTTHUMT00000407720.1" ; hgnc_id "HGNC:14493" ; level 2 ; orig_coord_info "chr12,93469286,93469355,+" ; protein_id "ENSP00000351506.3" ; transcript_id "UBE2N--MRPL42^ENST00000358678.7" ; transcript_name "MRPL42-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
WNK1--DGKA HAVANA gene 1001 42908 . + . FI_gene_label "WNK1^ENSG00000060237.19" ; ID "WNK1--DGKA^WNK1^ENSG00000060237.19" ; ccdsid "CCDS8506.1" ; exon_id "ENSE00003847370.1" ; exon_number 1 ; gene_id "WNK1--DGKA^WNK1^ENSG00000060237.19" ; gene_name WNK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090321.6" ; havana_transcript "OTTHUMT00000206683.2" ; hgnc_id "HGNC:14540" ; level 2 ; orig_coord_info "chr12,753566,754324,+" ; protein_id "ENSP00000313059.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "WNK1--DGKA^ENST00000315939.11" ; transcript_name "WNK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
WNK1--DGKA HAVANA mRNA 1001 42908 . + . FI_gene_label "WNK1^ENSG00000060237.19" ; ID "WNK1--DGKA^ENST00000315939.11" ; Parent "WNK1--DGKA^WNK1^ENSG00000060237.19" ; ccdsid "CCDS8506.1" ; exon_id "ENSE00003847370.1" ; exon_number 1 ; gene_id "WNK1--DGKA^WNK1^ENSG00000060237.19" ; gene_name WNK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090321.6" ; havana_transcript "OTTHUMT00000206683.2" ; hgnc_id "HGNC:14540" ; level 2 ; orig_coord_info "chr12,753566,754324,+" ; protein_id "ENSP00000313059.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "WNK1--DGKA^ENST00000315939.11" ; transcript_name "WNK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WNK1--DGKA HAVANA gene 48659 63622 . + . FI_gene_label "DGKA^ENSG00000065357.20" ; ID "WNK1--DGKA^DGKA^ENSG00000065357.20" ; ccdsid "CCDS8896.1" ; exon_id "ENSE00003798460.1" ; exon_number 2 ; gene_id "WNK1--DGKA^DGKA^ENSG00000065357.20" ; gene_name DGKA ; gene_type protein_coding ; havana_gene "OTTHUMG00000170109.14" ; havana_transcript "OTTHUMT00000407291.2" ; hgnc_id "HGNC:2849" ; level 2 ; orig_coord_info "chr12,55936504,55936567,+" ; protein_id "ENSP00000328405.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WNK1--DGKA^ENST00000331886.10" ; transcript_name "DGKA-201" ; transcript_support_level 5 ; transcript_type protein_coding
WNK1--DGKA HAVANA mRNA 48659 63622 . + . FI_gene_label "DGKA^ENSG00000065357.20" ; ID "WNK1--DGKA^ENST00000331886.10" ; Parent "WNK1--DGKA^DGKA^ENSG00000065357.20" ; ccdsid "CCDS8896.1" ; exon_id "ENSE00003798460.1" ; exon_number 2 ; gene_id "WNK1--DGKA^DGKA^ENSG00000065357.20" ; gene_name DGKA ; gene_type protein_coding ; havana_gene "OTTHUMG00000170109.14" ; havana_transcript "OTTHUMT00000407291.2" ; hgnc_id "HGNC:2849" ; level 2 ; orig_coord_info "chr12,55936504,55936567,+" ; protein_id "ENSP00000328405.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WNK1--DGKA^ENST00000331886.10" ; transcript_name "DGKA-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
CCDC12--CCDC12P1 HAVANA gene 14609 15089 . + . FI_gene_label "CCDC12P1^ENSG00000226366.1" ; ID "CCDC12--CCDC12P1^CCDC12P1^ENSG00000226366.1" ; exon_id "ENSE00001665074.1" ; exon_number 1 ; gene_id "CCDC12--CCDC12P1^CCDC12P1^ENSG00000226366.1" ; gene_name CCDC12P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000058410.2" ; havana_transcript "OTTHUMT00000129390.1" ; hgnc_id "HGNC:54595" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,51926882,51927362,-" ; tag pseudo_consens basic ; transcript_id "CCDC12--CCDC12P1^ENST00000447288.1" ; transcript_name "CCDC12P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
CCDC12--CCDC12P1 HAVANA RNA 14609 15089 . + . FI_gene_label "CCDC12P1^ENSG00000226366.1" ; ID "CCDC12--CCDC12P1^ENST00000447288.1" ; Parent "CCDC12--CCDC12P1^CCDC12P1^ENSG00000226366.1" ; exon_id "ENSE00001665074.1" ; exon_number 1 ; gene_id "CCDC12--CCDC12P1^CCDC12P1^ENSG00000226366.1" ; gene_name CCDC12P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000058410.2" ; havana_transcript "OTTHUMT00000129390.1" ; hgnc_id "HGNC:54595" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,51926882,51927362,-" ; tag pseudo_consens basic ; transcript_id "CCDC12--CCDC12P1^ENST00000447288.1" ; transcript_name "CCDC12P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NCAPD2--AC025578.1 HAVANA gene 23189 23731 . + . FI_gene_label "AC025578.1^ENSG00000258133.1" ; ID "NCAPD2--AC025578.1^AC025578.1^ENSG00000258133.1" ; exon_id "ENSE00002428237.1" ; exon_number 1 ; gene_id "NCAPD2--AC025578.1^AC025578.1^ENSG00000258133.1" ; gene_name "AC025578.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000169939.2" ; havana_transcript "OTTHUMT00000406621.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,58394596,58395138,+" ; tag pseudo_consens basic ; transcript_id "NCAPD2--AC025578.1^ENST00000552027.1" ; transcript_name "AC025578.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
NCAPD2--AC025578.1 HAVANA RNA 23189 23731 . + . FI_gene_label "AC025578.1^ENSG00000258133.1" ; ID "NCAPD2--AC025578.1^ENST00000552027.1" ; Parent "NCAPD2--AC025578.1^AC025578.1^ENSG00000258133.1" ; exon_id "ENSE00002428237.1" ; exon_number 1 ; gene_id "NCAPD2--AC025578.1^AC025578.1^ENSG00000258133.1" ; gene_name "AC025578.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000169939.2" ; havana_transcript "OTTHUMT00000406621.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,58394596,58395138,+" ; tag pseudo_consens basic ; transcript_id "NCAPD2--AC025578.1^ENST00000552027.1" ; transcript_name "AC025578.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NCAPD2--ERVK-28 HAVANA gene 23189 25757 . + . FI_gene_label "ERVK-28^ENSG00000267696.6" ; ID "NCAPD2--ERVK-28^ERVK-28^ENSG00000267696.6" ; exon_id "ENSE00002850947.1" ; exon_number 1 ; gene_id "NCAPD2--ERVK-28^ERVK-28^ENSG00000267696.6" ; gene_name "ERVK-28" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180737.2" ; havana_transcript "OTTHUMT00000452835.1" ; hgnc_id "HGNC:44981" ; level 2 ; orig_coord_info "chr19,27646346,27646483,-" ; transcript_id "NCAPD2--ERVK-28^ENST00000589010.1" ; transcript_name "ERVK-28-201" ; transcript_support_level 5 ; transcript_type lncRNA
NCAPD2--ERVK-28 HAVANA RNA 23189 25757 . + . FI_gene_label "ERVK-28^ENSG00000267696.6" ; ID "NCAPD2--ERVK-28^ENST00000589010.1" ; Parent "NCAPD2--ERVK-28^ERVK-28^ENSG00000267696.6" ; exon_id "ENSE00002850947.1" ; exon_number 1 ; gene_id "NCAPD2--ERVK-28^ERVK-28^ENSG00000267696.6" ; gene_name "ERVK-28" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180737.2" ; havana_transcript "OTTHUMT00000452835.1" ; hgnc_id "HGNC:44981" ; level 2 ; orig_coord_info "chr19,27646346,27646483,-" ; transcript_id "NCAPD2--ERVK-28^ENST00000589010.1" ; transcript_name "ERVK-28-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
NCAPD2--RPL21P103 HAVANA gene 23189 23676 . + . FI_gene_label "RPL21P103^ENSG00000241423.2" ; ID "NCAPD2--RPL21P103^RPL21P103^ENSG00000241423.2" ; exon_id "ENSE00001903578.2" ; exon_number 1 ; gene_id "NCAPD2--RPL21P103^RPL21P103^ENSG00000241423.2" ; gene_name RPL21P103 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000157583.2" ; havana_transcript "OTTHUMT00000349217.2" ; hgnc_id "HGNC:36732" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,58244378,58244865,+" ; tag pseudo_consens basic ; transcript_id "NCAPD2--RPL21P103^ENST00000479921.2" ; transcript_name "RPL21P103-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
NCAPD2--RPL21P103 HAVANA RNA 23189 23676 . + . FI_gene_label "RPL21P103^ENSG00000241423.2" ; ID "NCAPD2--RPL21P103^ENST00000479921.2" ; Parent "NCAPD2--RPL21P103^RPL21P103^ENSG00000241423.2" ; exon_id "ENSE00001903578.2" ; exon_number 1 ; gene_id "NCAPD2--RPL21P103^RPL21P103^ENSG00000241423.2" ; gene_name RPL21P103 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000157583.2" ; havana_transcript "OTTHUMT00000349217.2" ; hgnc_id "HGNC:36732" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,58244378,58244865,+" ; tag pseudo_consens basic ; transcript_id "NCAPD2--RPL21P103^ENST00000479921.2" ; transcript_name "RPL21P103-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
PARN--AC061997.1 ENSEMBL gene 46305 46400 . + . FI_gene_label "AC061997.1^ENSG00000251838.1" ; ID "PARN--AC061997.1^AC061997.1^ENSG00000251838.1" ; exon_id "ENSE00002088306.1" ; exon_number 1 ; gene_id "PARN--AC061997.1^AC061997.1^ENSG00000251838.1" ; gene_name "AC061997.1" ; gene_type snoRNA ; level 3 ; orig_coord_info "chr11,37702125,37702220,-" ; tag basic ; transcript_id "PARN--AC061997.1^ENST00000516029.1" ; transcript_name "AC061997.1-201" ; transcript_support_level NA ; transcript_type snoRNA
PARN--AC061997.1 ENSEMBL RNA 46305 46400 . + . FI_gene_label "AC061997.1^ENSG00000251838.1" ; ID "PARN--AC061997.1^ENST00000516029.1" ; Parent "PARN--AC061997.1^AC061997.1^ENSG00000251838.1" ; exon_id "ENSE00002088306.1" ; exon_number 1 ; gene_id "PARN--AC061997.1^AC061997.1^ENSG00000251838.1" ; gene_name "AC061997.1" ; gene_type snoRNA ; level 3 ; orig_coord_info "chr11,37702125,37702220,-" ; tag basic ; transcript_id "PARN--AC061997.1^ENST00000516029.1" ; transcript_name "AC061997.1-201" ; transcript_support_level NA ; transcript_type snoRNA
L1 and L2 created:
PARN--AC104042.1 HAVANA gene 46305 47855 . + . FI_gene_label "AC104042.1^ENSG00000254498.1" ; ID "PARN--AC104042.1^AC104042.1^ENSG00000254498.1" ; exon_id "ENSE00002168998.1" ; exon_number 1 ; gene_id "PARN--AC104042.1^AC104042.1^ENSG00000254498.1" ; gene_name "AC104042.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166332.1" ; havana_transcript "OTTHUMT00000389187.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,36696317,36697090,+" ; tag pseudo_consens basic ; transcript_id "PARN--AC104042.1^ENST00000524806.1" ; transcript_name "AC104042.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
PARN--AC104042.1 HAVANA RNA 46305 47855 . + . FI_gene_label "AC104042.1^ENSG00000254498.1" ; ID "PARN--AC104042.1^ENST00000524806.1" ; Parent "PARN--AC104042.1^AC104042.1^ENSG00000254498.1" ; exon_id "ENSE00002168998.1" ; exon_number 1 ; gene_id "PARN--AC104042.1^AC104042.1^ENSG00000254498.1" ; gene_name "AC104042.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166332.1" ; havana_transcript "OTTHUMT00000389187.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,36696317,36697090,+" ; tag pseudo_consens basic ; transcript_id "PARN--AC104042.1^ENST00000524806.1" ; transcript_name "AC104042.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
486 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1037 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 33 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed