AIH curated blacklist: matched 15 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 491
Pass (FILTER=PASS): 77 (15.7%)
Fail (FILTER=FAIL): 414 (84.3%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 15
All 15 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 112
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 86
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 32
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 23
confidence_below_min(low<high): 23
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 20
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 20
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 17
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 13
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 10
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 7
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 6
confidence_below_min(medium<high);aih_curated_blacklist: 6
Breakdown by confidence:
high: 77 pass, 11 fail (total: 88)
low: 0 pass, 202 fail (total: 202)
medium: 0 pass, 201 fail (total: 201)
Arriba filter: 491 rows -> 77 PASS; wrote FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.arriba.fusions.filtered.tsv and FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.arriba.fusions.filter_summary.txt