File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/414039e782944b3d9b1a9b79ebacb9/.command.log
Size
5.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bhK-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/399597928e6223c6de0f669d885e25/659_bhK-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/414039e782944b3d9b1a9b79ebacb9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/414039e782944b3d9b1a9b79ebacb9/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/aeb2047d0e62b5a34d32cc7a30c91c/659_bhK-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
CCDC6--RET
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
PRSS27--TPSB2
starfusion
NEBL--CDK1
starfusion
ECHS1--NEBL
starfusion
arriba
DNAJC1--C10orf143
starfusion
arriba
PMS2P5--CCDC146
starfusion
STX16--NPEPL1
arriba
PCDHGA4--PCDHGA8
arriba
PCDHGA4--PCDHGA10
arriba
PCDHGA4--PCDHGC4
arriba
PCDHGA4--PCDHGB6
arriba
PCDHGA4--PCDHGC5
arriba
PCDHGA4--PCDHGA11
arriba
PCDHGA4--PCDHGB7
arriba
PCDHGA4--PCDHGC3
arriba
PCDHGA4--PCDHGA9
arriba
PCDHGA4--PCDHGA12
arriba
AC092807.3--DDAH1
arriba
TVP23C--CDRT4
arriba
KLRC4--KLRK1
arriba
TLK2--FAM157A
arriba
TRIM59--IFT80
arriba

  0%|          | 0/24 [00:00<?, ?it/s]
Processing CCDC6--RET:   0%|          | 0/24 [00:00<?, ?it/s]
Processing CCDC6--RET:   4%|▍         | 1/24 [00:00<00:02,  9.26it/s]
Processing TLK2--AC240565.1:   4%|▍         | 1/24 [00:00<00:02,  9.26it/s]
Processing TLK2--AC240565.1:   8%|▊         | 2/24 [00:00<00:02,  9.48it/s]
Processing TLK2P1--AC110079.1:   8%|▊         | 2/24 [00:00<00:02,  9.48it/s]
Processing TLK2P1--AC110079.1:  12%|█▎        | 3/24 [00:00<00:02,  9.56it/s]
Processing PRSS27--TPSB2:  12%|█▎        | 3/24 [00:00<00:02,  9.56it/s]     
Processing PRSS27--TPSB2:  17%|█▋        | 4/24 [00:00<00:02,  9.59it/s]
Processing NEBL--CDK1:  17%|█▋        | 4/24 [00:00<00:02,  9.59it/s]   
Processing NEBL--CDK1:  21%|██        | 5/24 [00:00<00:01,  9.61it/s]
Processing ECHS1--NEBL:  21%|██        | 5/24 [00:00<00:01,  9.61it/s]
Processing ECHS1--NEBL:  25%|██▌       | 6/24 [00:00<00:01,  9.62it/s]
Processing DNAJC1--C10orf143:  25%|██▌       | 6/24 [00:00<00:01,  9.62it/s]
Processing DNAJC1--C10orf143:  29%|██▉       | 7/24 [00:00<00:01,  9.63it/s]
Processing PMS2P5--CCDC146:  29%|██▉       | 7/24 [00:00<00:01,  9.63it/s]  
Processing PMS2P5--CCDC146:  33%|███▎      | 8/24 [00:00<00:01,  9.64it/s]
Processing STX16--NPEPL1:  33%|███▎      | 8/24 [00:00<00:01,  9.64it/s]  
Processing STX16--NPEPL1:  38%|███▊      | 9/24 [00:00<00:01,  9.64it/s]
Processing PCDHGA4--PCDHGA8:  38%|███▊      | 9/24 [00:00<00:01,  9.64it/s]
Processing PCDHGA4--PCDHGA8:  42%|████▏     | 10/24 [00:01<00:01,  9.64it/s]
Processing PCDHGA4--PCDHGA10:  42%|████▏     | 10/24 [00:01<00:01,  9.64it/s]
Processing PCDHGA4--PCDHGA10:  46%|████▌     | 11/24 [00:01<00:01,  9.64it/s]
Processing PCDHGA4--PCDHGC4:  46%|████▌     | 11/24 [00:01<00:01,  9.64it/s] 
Processing PCDHGA4--PCDHGC4:  50%|█████     | 12/24 [00:01<00:01,  9.64it/s]
Processing PCDHGA4--PCDHGB6:  50%|█████     | 12/24 [00:01<00:01,  9.64it/s]
Processing PCDHGA4--PCDHGB6:  54%|█████▍    | 13/24 [00:01<00:01,  9.65it/s]
Processing PCDHGA4--PCDHGC5:  54%|█████▍    | 13/24 [00:01<00:01,  9.65it/s]
Processing PCDHGA4--PCDHGC5:  58%|█████▊    | 14/24 [00:01<00:01,  9.65it/s]
Processing PCDHGA4--PCDHGA11:  58%|█████▊    | 14/24 [00:01<00:01,  9.65it/s]
Processing PCDHGA4--PCDHGA11:  62%|██████▎   | 15/24 [00:01<00:00,  9.65it/s]
Processing PCDHGA4--PCDHGB7:  62%|██████▎   | 15/24 [00:01<00:00,  9.65it/s] 
Processing PCDHGA4--PCDHGB7:  67%|██████▋   | 16/24 [00:01<00:00,  9.65it/s]
Processing PCDHGA4--PCDHGC3:  67%|██████▋   | 16/24 [00:01<00:00,  9.65it/s]
Processing PCDHGA4--PCDHGC3:  71%|███████   | 17/24 [00:01<00:00,  9.65it/s]
Processing PCDHGA4--PCDHGA9:  71%|███████   | 17/24 [00:01<00:00,  9.65it/s]
Processing PCDHGA4--PCDHGA9:  75%|███████▌  | 18/24 [00:01<00:00,  9.64it/s]
Processing PCDHGA4--PCDHGA12:  75%|███████▌  | 18/24 [00:01<00:00,  9.64it/s]
Processing PCDHGA4--PCDHGA12:  79%|███████▉  | 19/24 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  79%|███████▉  | 19/24 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  83%|████████▎ | 20/24 [00:02<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  83%|████████▎ | 20/24 [00:02<00:00,  9.65it/s]    
Processing TVP23C--CDRT4:  88%|████████▊ | 21/24 [00:02<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  88%|████████▊ | 21/24 [00:02<00:00,  9.65it/s] 
Processing KLRC4--KLRK1:  92%|█████████▏| 22/24 [00:02<00:00,  9.65it/s]
Processing TLK2--FAM157A:  92%|█████████▏| 22/24 [00:02<00:00,  9.65it/s]
Processing TLK2--FAM157A:  96%|█████████▌| 23/24 [00:02<00:00,  9.65it/s]
Processing TRIM59--IFT80:  96%|█████████▌| 23/24 [00:02<00:00,  9.65it/s]
Processing TRIM59--IFT80: 100%|██████████| 24/24 [00:02<00:00,  9.65it/s]
Processing TRIM59--IFT80: 100%|██████████| 24/24 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory