Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/6b6dc3abe6520719d8c27ec22f4c8e/659_dRe-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/6b6dc3abe6520719d8c27ec22f4c8e/659_dRe-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/fb27981969f3d726cc626b791954da/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/fb27981969f3d726cc626b791954da/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/c23f87a0a4f013ba696895ba7aeeb7/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusionreport.tsv
==> STAGING COMPLETE (6 inputs)
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions 659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusionreport.tsv --gtf /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1 --shrink_introns --max_intron_length 1000
Done.
Execution Time = 0.13 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions 659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusionreport.tsv --gtf /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1 --shrink_introns --max_intron_length 1000
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/fusion_contigs.ok
Running: cp /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/cp_contigs_file_workdir
Running: cp /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/cp_gtf_file_workdir.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf > /tmp/nxf.kcRalF6c4R/cytoBand.txt
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf > /tmp/nxf.kcRalF6c4R/cytoBand.txt
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/cytoband.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed
-parsing GTF file: /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/merged_contig_gtf_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed.sorted.bed
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed.bedsort.ok
Running: bgzip -f /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed.sorted.bed
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed.bgzip.ok
Running: tabix -p bed /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed.sorted.bed.gz
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bed.tabix.ok
Running: samtools faidx /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa
Execution Time = 0.00 minutes. CMD: samtools faidx /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/merged_contig_fai.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf --CPU 8 --out_prefix 659_dRe-T1-TRNA-1_B23MHV2LT4_1.star --out_dir /tmp/nxf.kcRalF6c4R/fi_workdir --reads "/tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz"
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
Jun 08 09:58:44 ..... started STAR run
Jun 08 09:58:44 ..... loading genome
Jun 08 10:00:28 ... generating Suffix Array index
Jun 08 10:04:34 ... completed Suffix Array index
Jun 08 10:04:35 ..... processing annotations GTF
Jun 08 10:04:35 ..... inserting junctions into the genome indices
Jun 08 10:05:37 ..... started mapping
Jun 08 11:00:56 ..... finished mapping
Jun 08 11:00:58 ..... started sorting BAM
Jun 08 11:01:00 ..... finished successfully
* Running CMD: mv Aligned.sortedByCoord.out.bam 659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index 659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.sortedByCoord.out.bam
Execution Time = 62.32 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf --CPU 8 --out_prefix 659_dRe-T1-TRNA-1_B23MHV2LT4_1.star --out_dir /tmp/nxf.kcRalF6c4R/fi_workdir --reads "/tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz"
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/run_STAR.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam --remove_dups
11:01:22 : INFO : Done.
Execution Time = 0.31 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam --remove_dups
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/mark_dup_reads.ok
Running: samtools index /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam
Execution Time = 0.04 minutes. CMD: samtools index /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/mark_dups_reads.index.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
-parsing GTF file: /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf
-parsing /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam
[10000]
[20000]
[30000]
[40000]
[50000]
[60000]
[70000]
[80000]
[90000]
[100000]
[110000]
[120000]
[130000]
[140000]
[150000]
[160000]
[170000]
[180000]
[190000]
[200000]
[210000]
[220000]
[230000]
[240000]
[250000]
[260000]
[270000]
[280000]
[290000]
[300000]
[310000]
[320000]
[330000]
[340000]
[350000]
[360000]
[370000]
[380000]
[390000]
[400000]
[410000]
[420000]
[430000]
[440000]
[450000]
[460000]
[470000]
[480000]
[490000]
[500000]
[510000]
[520000]
[530000]
[540000]
[550000]
[560000]
[570000]
[580000]
[590000]
[600000]
[610000]
[620000]
[630000]
[640000]
[650000]
[660000]
[670000]
[680000]
[690000]
[700000]
[710000]
[720000]
[730000]
[740000]
[750000]
[760000]
[770000]
[780000]
[790000]
[800000]
[810000]
[820000]
[830000]
[840000]
[850000]
[860000]
[870000]
[880000]
[890000]
[900000]
[910000]
[920000]
[930000]
[940000]
[950000]
[960000]
[970000]
[980000]
[990000]
[1000000]
[1010000]
[1020000]
[1030000]
[1040000]
[1050000]
[1060000]
[1070000]
[1080000]
[1090000]
[1100000]
[1110000]
[1120000]
[1130000]
[1140000]
[1150000]
[1160000]
[1170000]
[1180000]
[1190000]
[1200000]
[1210000]
[1220000]
[1230000]
[1240000]
[1250000]
[1260000]
[1270000]
[1280000]
[1290000]
[1300000]
[1310000]
[1320000]
[1330000]
[1340000]
[1350000]
[1360000]
[1370000]
[1380000]
[1390000]
[1400000]
[1410000]
[1420000]
[1430000]
[1440000]
[1450000]
[1460000]
[1470000]
[1480000]
[1490000]
[1500000]
[1510000]
[1520000]
[1530000]
[1540000]
[1550000]
[1560000]
[1570000]
[1580000]
[1590000]
[1600000]
[1610000]
[1620000]
[1630000]
[1640000]
[1650000]
[1660000]
[1670000]
[1680000]
[1690000]
[1700000]
[1710000]
[1720000]
[1730000]
[1740000]
[1750000]
[1760000]
[1770000]
[1780000]
[1790000]
[1800000]
[1810000]
[1820000]
[1830000]
[1840000]
[1850000]
[1860000]
[1870000]
[1880000]
[1890000]
[1900000]
[1910000]
[1920000]
[1930000]
[1940000]
[1950000]
[1960000]
[1970000]
[1980000]
[1990000]
[2000000]
[2010000]
[2020000]
[2030000]
[2040000]
[2050000]
[2060000]
[2070000]
[2080000]
[2090000]
[2100000]
[2110000]
[2120000]
[2130000]
[2140000]
[2150000]
[2160000]
[2170000]
[2180000]
[2190000]
[2200000]
[2210000]
[2220000]
[2230000]
[2240000]
[2250000]
[2260000]
[2270000]
[2280000]
[2290000]
[2300000]
[2310000]
[2320000]
[2330000]
[2340000]
[2350000]
[2360000]
[2370000]
[2380000]
[2390000]
[2400000]
[2410000]
[2420000]
[2430000]
[2440000]
[2450000]
[2460000]
[2470000]
[2480000]
[2490000]
[2500000]
[2510000]
[2520000]
[2530000]
[2540000]
[2550000]
[2560000]
[2570000]
[2580000]
[2590000]
[2600000]
[2610000]
[2620000]
[2630000]
[2640000]
[2650000]
[2660000]
[2670000]
[2680000]
[2690000]
[2700000]
[2710000]
[2720000]
[2730000]
[2740000]
[2750000]
[2760000]
[2770000]
[2780000]
[2790000]
[2800000]
[2810000]
[2820000]
[2830000]
[2840000]
[2850000]
[2860000]
[2870000]
[2880000]
[2890000]
[2900000]
[2910000]
[2920000]
[2930000]
[2940000]
[2950000]
[2960000]
[2970000]
[2980000]
[2990000]
[3000000]
[3010000]
[3020000]
[3030000]
[3040000]
[3050000]
[3060000]
[3070000]
[3080000]
[3090000]
[3100000]
[3110000]
[3120000]
[3130000]
[3140000]
[3150000]
[3160000]
[3170000]
[3180000]
[3190000]
[3200000]
[3210000]
[3220000]
[3230000]
[3240000]
[3250000]
[3260000]
[3270000]
[3280000]
[3290000]
[3300000]
[3310000]
[3320000]
[3330000]
[3340000]
[3350000]
[3360000]
[3370000]
[3380000]
[3390000]
[3400000]
[3410000]
[3420000]
[3430000]
[3440000]
[3450000]
[3460000]
[3470000]
[3480000] -done parsing /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 81,
'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 10,
'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 12,
'num genes matched < 2' => 38,
'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 9,
'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 8,
'seq-similar region overlap' => 180,
'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 27,
'excessive soft clipping' => 17564,
'low complexity anchor region' => 191,
'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 182,
'small anchor length' => 163,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 760,
'exons hit < 2' => 10,
'per_id < 96' => 11669,
' ** passed ** ' => 16155,
'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 48,
'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 12
};
-writing fusion junction support info.
Execution Time = 2.14 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
-outputting the spanning read info: /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
[1000] -fusion SPANNING read extraction for scaff: AC015911.9--SLFN12L
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000] -fusion SPANNING read extraction for scaff: AC092821.3--CLEC2D
[1000] -fusion SPANNING read extraction for scaff: AC096582.2--SEPTIN14
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000] -fusion SPANNING read extraction for scaff: AGAP4--FRMPD2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000] -fusion SPANNING read extraction for scaff: BMS1P7--AGAP14P
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000] -fusion SPANNING read extraction for scaff: BTBD9--DNAH8
[1000]
[2000] -fusion SPANNING read extraction for scaff: C8orf88--AC016868.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000] -fusion SPANNING read extraction for scaff: C8orf88--GOLGA7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000] -fusion SPANNING read extraction for scaff: CATSPERB--TC2N
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000] -fusion SPANNING read extraction for scaff: ETV6--DLG2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000] -fusion SPANNING read extraction for scaff: LLGL2--SEPTIN9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000] -fusion SPANNING read extraction for scaff: NPEPPS--AC243829.5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000] -fusion SPANNING read extraction for scaff: NPHP3--ACAD11
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000] -fusion SPANNING read extraction for scaff: NSF--LRRC37A
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000] -fusion SPANNING read extraction for scaff: OLFM2--FBXL20
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000] -fusion SPANNING read extraction for scaff: PCDHA11--PCDHA13
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000] -fusion SPANNING read extraction for scaff: PCDHA11--PCDHAC1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000] -fusion SPANNING read extraction for scaff: PCDHA11--PCDHAC2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000] -fusion SPANNING read extraction for scaff: PCDHA6--PCDHA13
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000] -fusion SPANNING read extraction for scaff: PCDHA6--PCDHAC1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000] -fusion SPANNING read extraction for scaff: PCDHA6--PCDHAC2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8
[1000]
[2000]
[3000]
[4000]
[5000]
[6000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000] -fusion SPANNING read extraction for scaff: SEC31A--ATXN1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000] -fusion SPANNING read extraction for scaff: SMURF2P1--LRRC37B
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000] -fusion SPANNING read extraction for scaff: SNU13--LLPH
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000] -fusion SPANNING read extraction for scaff: SPIDR--AC091096.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000] -fusion SPANNING read extraction for scaff: TLK2--AC240565.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000] -fusion SPANNING read extraction for scaff: TMED7--TICAM2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000]
[510000]
[511000]
[512000]
[513000]
[514000]
[515000]
[516000]
[517000]
[518000]
[519000]
[520000]
[521000]
[522000]
[523000]
[524000]
[525000]
[526000]
[527000]
[528000]
[529000]
[530000]
[531000]
[532000]
[533000]
[534000]
[535000]
[536000]
[537000]
[538000]
[539000]
[540000]
[541000]
[542000]
[543000]
[544000]
[545000]
[546000]
[547000]
[548000]
[549000]
[550000]
[551000]
[552000]
[553000]
[554000]
[555000]
[556000]
[557000]
[558000]
[559000]
[560000]
[561000]
[562000]
[563000]
[564000]
[565000]
[566000]
[567000]
[568000]
[569000]
[570000]
[571000]
[572000]
[573000]
[574000]
[575000]
[576000]
[577000]
[578000]
[579000]
[580000]
[581000]
[582000]
[583000]
[584000]
[585000]
[586000]
[587000]
[588000]
[589000]
[590000]
[591000]
[592000]
[593000]
[594000]
[595000]
[596000]
[597000]
[598000]
[599000]
[600000]
[601000]
[602000]
[603000]
[604000]
[605000]
[606000]
[607000]
[608000]
[609000]
[610000]
[611000]
[612000]
[613000]
[614000]
[615000]
[616000]
[617000]
[618000]
[619000]
[620000]
[621000]
[622000]
[623000]
[624000]
[625000]
[626000]
[627000]
[628000]
[629000]
[630000]
[631000]
[632000]
[633000]
[634000]
[635000]
[636000]
[637000]
[638000]
[639000]
[640000]
[641000]
[642000]
[643000]
[644000]
[645000]
[646000]
[647000]
[648000]
[649000]
[650000]
[651000]
[652000]
[653000]
[654000]
[655000]
[656000]
[657000]
[658000]
[659000]
[660000]
[661000]
[662000]
[663000]
[664000]
[665000]
[666000]
[667000]
[668000]
[669000]
[670000]
[671000]
[672000]
[673000]
[674000]
[675000]
[676000]
[677000]
[678000]
[679000]
[680000]
[681000]
[682000]
[683000]
[684000]
[685000]
[686000]
[687000]
[688000]
[689000]
[690000]
[691000]
[692000]
[693000]
[694000]
[695000]
[696000]
[697000]
[698000]
[699000]
[700000]
[701000]
[702000]
[703000]
[704000]
[705000]
[706000]
[707000]
[708000]
[709000]
[710000]
[711000]
[712000]
[713000]
[714000]
[715000]
[716000]
[717000]
[718000]
[719000]
[720000]
[721000]
[722000]
[723000]
[724000]
[725000]
[726000]
[727000]
[728000]
[729000]
[730000]
[731000]
[732000]
[733000]
[734000]
[735000]
[736000]
[737000]
[738000]
[739000]
[740000]
[741000]
[742000]
[743000]
[744000]
[745000]
[746000]
[747000]
[748000]
[749000]
[750000]
[751000]
[752000]
[753000]
[754000]
[755000]
[756000]
[757000]
[758000]
[759000]
[760000]
[761000]
[762000]
[763000]
[764000]
[765000]
[766000]
[767000]
[768000]
[769000]
[770000]
[771000]
[772000]
[773000]
[774000]
[775000]
[776000]
[777000]
[778000]
[779000]
[780000]
[781000]
[782000]
[783000]
[784000]
[785000]
[786000]
[787000]
[788000]
[789000]
[790000]
[791000]
[792000]
[793000]
[794000]
[795000]
[796000]
[797000]
[798000]
[799000]
[800000]
[801000]
[802000]
[803000]
[804000]
[805000]
[806000]
[807000]
[808000]
[809000]
[810000]
[811000]
[812000]
[813000]
[814000]
[815000]
[816000]
[817000]
[818000]
[819000]
[820000]
[821000]
[822000]
[823000]
[824000]
[825000]
[826000]
[827000]
[828000]
[829000]
[830000]
[831000]
[832000]
[833000]
[834000]
[835000]
[836000]
[837000]
[838000]
[839000]
[840000]
[841000]
[842000]
[843000]
[844000]
[845000]
[846000]
[847000]
[848000]
[849000]
[850000]
[851000]
[852000]
[853000]
[854000]
[855000]
[856000]
[857000]
[858000]
[859000]
[860000]
[861000]
[862000]
[863000]
[864000]
[865000]
[866000]
[867000]
[868000]
[869000]
[870000]
[871000]
[872000]
[873000]
[874000]
[875000]
[876000]
[877000]
[878000]
[879000]
[880000]
[881000]
[882000]
[883000]
[884000]
[885000]
[886000]
[887000]
[888000]
[889000]
[890000]
[891000]
[892000]
[893000]
[894000]
[895000]
[896000]
[897000]
[898000]
[899000]
[900000]
[901000]
[902000]
[903000]
[904000]
[905000]
[906000]
[907000]
[908000]
[909000]
[910000]
[911000]
[912000]
[913000]
[914000]
[915000]
[916000]
[917000]
[918000]
[919000]
[920000]
[921000]
[922000]
[923000]
[924000]
[925000]
[926000]
[927000]
[928000]
[929000]
[930000]
[931000]
[932000]
[933000]
[934000]
[935000]
[936000]
[937000]
[938000]
[939000]
[940000]
[941000]
[942000]
[943000]
[944000]
[945000]
[946000]
[947000]
[948000]
[949000]
[950000]
[951000]
[952000]
[953000]
[954000]
[955000]
[956000]
[957000]
[958000]
[959000]
[960000]
[961000]
[962000]
[963000]
[964000]
[965000]
[966000]
[967000]
[968000]
[969000]
[970000]
[971000]
[972000]
[973000]
[974000]
[975000]
[976000]
[977000]
[978000]
[979000]
[980000]
[981000]
[982000]
[983000]
[984000]
[985000]
[986000]
[987000]
[988000]
[989000]
[990000]
[991000]
[992000]
[993000]
[994000]
[995000]
[996000]
[997000]
[998000]
[999000]
[1000000]
[1001000]
[1002000]
[1003000]
[1004000]
[1005000]
[1006000]
[1007000]
[1008000]
[1009000]
[1010000]
[1011000]
[1012000]
[1013000]
[1014000]
[1015000]
[1016000]
[1017000]
[1018000]
[1019000]
[1020000]
[1021000]
[1022000]
[1023000]
[1024000]
[1025000]
[1026000]
[1027000]
[1028000]
[1029000]
[1030000]
[1031000]
[1032000]
[1033000]
[1034000]
[1035000]
[1036000]
[1037000]
[1038000]
[1039000]
[1040000]
[1041000]
[1042000]
[1043000]
[1044000]
[1045000]
[1046000]
[1047000]
[1048000]
[1049000]
[1050000]
[1051000]
[1052000]
[1053000]
[1054000]
[1055000]
[1056000]
[1057000]
[1058000]
[1059000]
[1060000]
[1061000]
[1062000]
[1063000]
[1064000]
[1065000]
[1066000]
[1067000]
[1068000]
[1069000]
[1070000]
[1071000]
[1072000]
[1073000]
[1074000]
[1075000]
[1076000]
[1077000]
[1078000]
[1079000]
[1080000]
[1081000]
[1082000]
[1083000]
[1084000]
[1085000]
[1086000]
[1087000]
[1088000]
[1089000]
[1090000]
[1091000]
[1092000]
[1093000]
[1094000]
[1095000]
[1096000]
[1097000]
[1098000]
[1099000]
[1100000]
[1101000]
[1102000]
[1103000]
[1104000]
[1105000]
[1106000]
[1107000]
[1108000]
[1109000]
[1110000]
[1111000]
[1112000]
[1113000]
[1114000]
[1115000]
[1116000]
[1117000]
[1118000]
[1119000]
[1120000]
[1121000]
[1122000]
[1123000]
[1124000]
[1125000]
[1126000]
[1127000]
[1128000]
[1129000]
[1130000]
[1131000]
[1132000]
[1133000]
[1134000]
[1135000]
[1136000]
[1137000]
[1138000]
[1139000]
[1140000]
[1141000]
[1142000]
[1143000]
[1144000]
[1145000]
[1146000]
[1147000]
[1148000]
[1149000]
[1150000]
[1151000]
[1152000]
[1153000]
[1154000]
[1155000]
[1156000]
[1157000]
[1158000]
[1159000]
[1160000]
[1161000]
[1162000]
[1163000]
[1164000]
[1165000]
[1166000]
[1167000]
[1168000]
[1169000]
[1170000]
[1171000]
[1172000]
[1173000]
[1174000]
[1175000]
[1176000]
[1177000]
[1178000]
[1179000]
[1180000]
[1181000]
[1182000]
[1183000]
[1184000]
[1185000]
[1186000]
[1187000]
[1188000]
[1189000]
[1190000]
[1191000]
[1192000]
[1193000]
[1194000]
[1195000]
[1196000]
[1197000]
[1198000]
[1199000]
[1200000]
[1201000]
[1202000]
[1203000]
[1204000]
[1205000]
[1206000]
[1207000]
[1208000]
[1209000]
[1210000]
[1211000]
[1212000]
[1213000]
[1214000]
[1215000]
[1216000]
[1217000]
[1218000]
[1219000]
[1220000]
[1221000]
[1222000]
[1223000]
[1224000]
[1225000]
[1226000]
[1227000]
[1228000] -fusion SPANNING read extraction for scaff: ZEB1--GRB7
-filtered reads reasons: $VAR1 = {
'lacks exon overlap' => 16272,
'seq similar region alignment' => 65060
};
Execution Time = 5.74 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/coalesce_junc_n_span.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj
EM: Starting log likelihood: -17819.529029
EM: Round [1] log likelihood: -17802.272283
EM: Round [2] log likelihood: -17797.867958
EM: Round [3] log likelihood: -17794.518200
EM: Round [4] log likelihood: -17791.891178
EM: Round [5] log likelihood: -17789.813068
EM: Round [6] log likelihood: -17788.158780
EM: Round [7] log likelihood: -17786.835195
EM: Round [8] log likelihood: -17785.771763
EM: Round [9] log likelihood: -17784.914300
EM: Round [10] log likelihood: -17784.220746
EM: Round [11] log likelihood: -17783.658158
EM: Round [12] log likelihood: -17783.200564
EM: Round [13] log likelihood: -17782.827366
EM: Round [14] log likelihood: -17782.522156
EM: Round [15] log likelihood: -17782.271818
EM: Round [16] log likelihood: -17782.065834
EM: Round [17] log likelihood: -17781.895750
EM: Round [18] log likelihood: -17781.754757
EM: Round [19] log likelihood: -17781.637365
EM: Round [20] log likelihood: -17781.539136
EM: Round [21] log likelihood: -17781.456485
EM: Round [22] log likelihood: -17781.386509
EM: Round [23] log likelihood: -17781.326857
EM: Round [24] log likelihood: -17781.275624
EM: Round [25] log likelihood: -17781.231264
EM: Round [26] log likelihood: -17781.192525
EM: Round [27] log likelihood: -17781.158390
EM: Round [28] log likelihood: -17781.128031
EM: Round [29] log likelihood: -17781.100778
EM: Round [30] log likelihood: -17781.076086
EM: Round [31] log likelihood: -17781.053511
EM: Round [32] log likelihood: -17781.032691
EM: Round [33] log likelihood: -17781.013335
EM: Round [34] log likelihood: -17780.995201
EM: Round [35] log likelihood: -17780.978096
EM: Round [36] log likelihood: -17780.961860
EM: Round [37] log likelihood: -17780.946363
EM: Round [38] log likelihood: -17780.931500
EM: Round [39] log likelihood: -17780.917182
EM: Round [40] log likelihood: -17780.903340
EM: Round [41] log likelihood: -17780.889914
EM: Round [42] log likelihood: -17780.876857
EM: Round [43] log likelihood: -17780.864127
EM: Round [44] log likelihood: -17780.851694
EM: Round [45] log likelihood: -17780.839529
EM: Round [46] log likelihood: -17780.827610
EM: Round [47] log likelihood: -17780.815917
EM: Round [48] log likelihood: -17780.804435
EM: Round [49] log likelihood: -17780.793150
EM: Round [50] log likelihood: -17780.782051
EM: Round [51] log likelihood: -17780.771127
EM: Round [52] log likelihood: -17780.760371
EM: Round [53] log likelihood: -17780.749775
EM: Round [54] log likelihood: -17780.739332
EM: Round [55] log likelihood: -17780.729037
EM: Round [56] log likelihood: -17780.718886
EM: Round [57] log likelihood: -17780.708872
EM: Round [58] log likelihood: -17780.698993
EM: Round [59] log likelihood: -17780.689245
EM: Round [60] log likelihood: -17780.679623
EM: Round [61] log likelihood: -17780.670126
EM: Round [62] log likelihood: -17780.660750
EM: Round [63] log likelihood: -17780.651492
EM: Round [64] log likelihood: -17780.642351
EM: Round [65] log likelihood: -17780.633322
EM: Round [66] log likelihood: -17780.624405
EM: Round [67] log likelihood: -17780.615596
EM: Round [68] log likelihood: -17780.606895
EM: Round [69] log likelihood: -17780.598298
EM: Round [70] log likelihood: -17780.589804
EM: Round [71] log likelihood: -17780.581411
EM: Round [72] log likelihood: -17780.573117
EM: Round [73] log likelihood: -17780.564921
EM: Round [74] log likelihood: -17780.556820
EM: Round [75] log likelihood: -17780.548813
EM: Round [76] log likelihood: -17780.540899
EM: Round [77] log likelihood: -17780.533076
EM: Round [78] log likelihood: -17780.525342
EM: Round [79] log likelihood: -17780.517696
EM: Round [80] log likelihood: -17780.510137
EM: Round [81] log likelihood: -17780.502662
EM: Round [82] log likelihood: -17780.495272
EM: Round [83] log likelihood: -17780.487963
EM: Round [84] log likelihood: -17780.480736
EM: Round [85] log likelihood: -17780.473589
EM: Round [86] log likelihood: -17780.466520
EM: Round [87] log likelihood: -17780.459528
EM: Round [88] log likelihood: -17780.452613
EM: Round [89] log likelihood: -17780.445773
EM: Round [90] log likelihood: -17780.439006
EM: Round [91] log likelihood: -17780.432313
EM: Round [92] log likelihood: -17780.425691
EM: Round [93] log likelihood: -17780.419139
EM: Round [94] log likelihood: -17780.412657
EM: Round [95] log likelihood: -17780.406244
EM: Round [96] log likelihood: -17780.399898
EM: Round [97] log likelihood: -17780.393618
EM: Round [98] log likelihood: -17780.387405
EM: Round [99] log likelihood: -17780.381256
EM: Round [100] log likelihood: -17780.375170
EM: Round [101] log likelihood: -17780.369147
EM: Round [102] log likelihood: -17780.363187
EM: Round [103] log likelihood: -17780.357287
EM: Round [104] log likelihood: -17780.351448
EM: Round [105] log likelihood: -17780.345668
EM: Round [106] log likelihood: -17780.339946
EM: Round [107] log likelihood: -17780.334282
EM: Round [108] log likelihood: -17780.328676
EM: Round [109] log likelihood: -17780.323125
EM: Round [110] log likelihood: -17780.317630
EM: Round [111] log likelihood: -17780.312189
EM: Round [112] log likelihood: -17780.306803
EM: Round [113] log likelihood: -17780.301469
EM: Round [114] log likelihood: -17780.296188
EM: Round [115] log likelihood: -17780.290959
EM: Round [116] log likelihood: -17780.285781
EM: Round [117] log likelihood: -17780.280654
EM: Round [118] log likelihood: -17780.275576
EM: Round [119] log likelihood: -17780.270548
EM: Round [120] log likelihood: -17780.265568
EM: Round [121] log likelihood: -17780.260636
EM: Round [122] log likelihood: -17780.255752
EM: Round [123] log likelihood: -17780.250914
EM: Round [124] log likelihood: -17780.246122
EM: Round [125] log likelihood: -17780.241376
EM: Round [126] log likelihood: -17780.236674
EM: Round [127] log likelihood: -17780.232017
EM: Round [128] log likelihood: -17780.227404
EM: Round [129] log likelihood: -17780.222835
EM: Round [130] log likelihood: -17780.218308
EM: Round [131] log likelihood: -17780.213823
EM: Round [132] log likelihood: -17780.209380
EM: Round [133] log likelihood: -17780.204978
EM: Round [134] log likelihood: -17780.200617
EM: Round [135] log likelihood: -17780.196297
EM: Round [136] log likelihood: -17780.192016
EM: Round [137] log likelihood: -17780.187774
EM: Round [138] log likelihood: -17780.183571
EM: Round [139] log likelihood: -17780.179407
EM: Round [140] log likelihood: -17780.175280
EM: Round [141] log likelihood: -17780.171191
EM: Round [142] log likelihood: -17780.167139
EM: Round [143] log likelihood: -17780.163123
EM: Round [144] log likelihood: -17780.159144
EM: Round [145] log likelihood: -17780.155200
EM: Round [146] log likelihood: -17780.151292
EM: Round [147] log likelihood: -17780.147419
EM: Round [148] log likelihood: -17780.143580
EM: Round [149] log likelihood: -17780.139775
EM: Round [150] log likelihood: -17780.136004
EM: Round [151] log likelihood: -17780.132267
EM: Round [152] log likelihood: -17780.128562
EM: Round [153] log likelihood: -17780.124890
EM: Round [154] log likelihood: -17780.121250
EM: Round [155] log likelihood: -17780.117642
EM: Round [156] log likelihood: -17780.114066
EM: Round [157] log likelihood: -17780.110521
EM: Round [158] log likelihood: -17780.107007
EM: Round [159] log likelihood: -17780.103523
EM: Round [160] log likelihood: -17780.100069
EM: Round [161] log likelihood: -17780.096645
EM: Round [162] log likelihood: -17780.093251
EM: Round [163] log likelihood: -17780.089886
EM: Round [164] log likelihood: -17780.086550
EM: Round [165] log likelihood: -17780.083242
EM: Round [166] log likelihood: -17780.079962
EM: Round [167] log likelihood: -17780.076711
EM: Round [168] log likelihood: -17780.073487
EM: Round [169] log likelihood: -17780.070291
EM: Round [170] log likelihood: -17780.067121
EM: Round [171] log likelihood: -17780.063978
EM: Round [172] log likelihood: -17780.060862
EM: Round [173] log likelihood: -17780.057772
EM: Round [174] log likelihood: -17780.054708
EM: Round [175] log likelihood: -17780.051670
EM: Round [176] log likelihood: -17780.048657
EM: Round [177] log likelihood: -17780.045669
EM: Round [178] log likelihood: -17780.042706
EM: Round [179] log likelihood: -17780.039768
EM: Round [180] log likelihood: -17780.036854
EM: Round [181] log likelihood: -17780.033964
EM: Round [182] log likelihood: -17780.031098
EM: Round [183] log likelihood: -17780.028256
EM: Round [184] log likelihood: -17780.025437
EM: Round [185] log likelihood: -17780.022641
EM: Round [186] log likelihood: -17780.019869
EM: Round [187] log likelihood: -17780.017118
EM: Round [188] log likelihood: -17780.014391
EM: Round [189] log likelihood: -17780.011685
EM: Round [190] log likelihood: -17780.009002
EM: Round [191] log likelihood: -17780.006340
EM: Round [192] log likelihood: -17780.003700
EM: Round [193] log likelihood: -17780.001081
EM: Round [194] log likelihood: -17779.998483
EM: Round [195] log likelihood: -17779.995907
EM: Round [196] log likelihood: -17779.993351
EM: Round [197] log likelihood: -17779.990815
EM: Round [198] log likelihood: -17779.988300
EM: Round [199] log likelihood: -17779.985805
EM: Round [200] log likelihood: -17779.983330
EM: Round [201] log likelihood: -17779.980875
EM: Round [202] log likelihood: -17779.978439
EM: Round [203] log likelihood: -17779.976022
EM: Round [204] log likelihood: -17779.973625
EM: Round [205] log likelihood: -17779.971247
EM: Round [206] log likelihood: -17779.968887
EM: Round [207] log likelihood: -17779.966546
EM: Round [208] log likelihood: -17779.964224
EM: Round [209] log likelihood: -17779.961920
EM: Round [210] log likelihood: -17779.959633
EM: Round [211] log likelihood: -17779.957365
EM: Round [212] log likelihood: -17779.955115
EM: Round [213] log likelihood: -17779.952882
EM: Round [214] log likelihood: -17779.950666
EM: Round [215] log likelihood: -17779.948468
EM: Round [216] log likelihood: -17779.946287
EM: Round [217] log likelihood: -17779.944123
EM: Round [218] log likelihood: -17779.941976
EM: Round [219] log likelihood: -17779.939845
EM: Round [220] log likelihood: -17779.937730
EM: Round [221] log likelihood: -17779.935632
EM: Round [222] log likelihood: -17779.933551
EM: Round [223] log likelihood: -17779.931485
EM: Round [224] log likelihood: -17779.929435
EM: Round [225] log likelihood: -17779.927400
EM: Round [226] log likelihood: -17779.925382
EM: Round [227] log likelihood: -17779.923378
EM: Round [228] log likelihood: -17779.921390
EM: Round [229] log likelihood: -17779.919418
EM: Round [230] log likelihood: -17779.917460
EM: Round [231] log likelihood: -17779.915517
EM: Round [232] log likelihood: -17779.913589
EM: Round [233] log likelihood: -17779.911675
EM: Round [234] log likelihood: -17779.909776
EM: Round [235] log likelihood: -17779.907891
EM: Round [236] log likelihood: -17779.906020
EM: Round [237] log likelihood: -17779.904164
EM: Round [238] log likelihood: -17779.902321
EM: Round [239] log likelihood: -17779.900493
EM: Round [240] log likelihood: -17779.898678
EM: Round [241] log likelihood: -17779.896876
EM: Round [242] log likelihood: -17779.895088
EM: Round [243] log likelihood: -17779.893314
EM: Round [244] log likelihood: -17779.891553
EM: Round [245] log likelihood: -17779.889804
EM: Round [246] log likelihood: -17779.888069
EM: Round [247] log likelihood: -17779.886347
EM: Round [248] log likelihood: -17779.884637
EM: Round [249] log likelihood: -17779.882941
EM: Round [250] log likelihood: -17779.881256
EM: Round [251] log likelihood: -17779.879584
EM: Round [252] log likelihood: -17779.877925
EM: Round [253] log likelihood: -17779.876278
EM: Round [254] log likelihood: -17779.874642
EM: Round [255] log likelihood: -17779.873019
EM: Round [256] log likelihood: -17779.871408
EM: Round [257] log likelihood: -17779.869809
EM: Round [258] log likelihood: -17779.868221
EM: Round [259] log likelihood: -17779.866645
EM: Round [260] log likelihood: -17779.865080
EM: Round [261] log likelihood: -17779.863527
EM: Round [262] log likelihood: -17779.861985
EM: Round [263] log likelihood: -17779.860454
EM: Round [264] log likelihood: -17779.858935
EM: Round [265] log likelihood: -17779.857426
EM: Round [266] log likelihood: -17779.855929
EM: Round [267] log likelihood: -17779.854442
EM: Round [268] log likelihood: -17779.852966
EM: Round [269] log likelihood: -17779.851501
EM: Round [270] log likelihood: -17779.850046
EM: Round [271] log likelihood: -17779.848602
EM: Round [272] log likelihood: -17779.847168
EM: Round [273] log likelihood: -17779.845744
EM: Round [274] log likelihood: -17779.844331
EM: Round [275] log likelihood: -17779.842928
EM: Round [276] log likelihood: -17779.841535
EM: Round [277] log likelihood: -17779.840151
EM: Round [278] log likelihood: -17779.838778
EM: Round [279] log likelihood: -17779.837415
EM: Round [280] log likelihood: -17779.836061
EM: Round [281] log likelihood: -17779.834717
EM: Round [282] log likelihood: -17779.833382
EM: Round [283] log likelihood: -17779.832057
EM: Round [284] log likelihood: -17779.830741
EM: Round [285] log likelihood: -17779.829435
EM: Round [286] log likelihood: -17779.828138
EM: Round [287] log likelihood: -17779.826850
EM: Round [288] log likelihood: -17779.825571
EM: Round [289] log likelihood: -17779.824301
EM: Round [290] log likelihood: -17779.823041
EM: Round [291] log likelihood: -17779.821789
EM: Round [292] log likelihood: -17779.820545
EM: Round [293] log likelihood: -17779.819311
EM: Round [294] log likelihood: -17779.818085
EM: Round [295] log likelihood: -17779.816868
EM: Round [296] log likelihood: -17779.815659
EM: Round [297] log likelihood: -17779.814459
EM: Round [298] log likelihood: -17779.813267
EM: Round [299] log likelihood: -17779.812084
EM: Round [300] log likelihood: -17779.810909
EM: Round [301] log likelihood: -17779.809742
EM: Round [302] log likelihood: -17779.808583
EM: Round [303] log likelihood: -17779.807432
EM: Round [304] log likelihood: -17779.806289
EM: Round [305] log likelihood: -17779.805154
EM: Round [306] log likelihood: -17779.804027
EM: Round [307] log likelihood: -17779.802908
EM: Round [308] log likelihood: -17779.801797
EM: Round [309] log likelihood: -17779.800693
EM: Round [310] log likelihood: -17779.799597
EM: Round [311] log likelihood: -17779.798508
EM: Round [312] log likelihood: -17779.797427
EM: Round [313] log likelihood: -17779.796353
EM: Round [314] log likelihood: -17779.795287
EM: Round [315] log likelihood: -17779.794228
EM: Round [316] log likelihood: -17779.793176
EM: Round [317] log likelihood: -17779.792132
EM: Round [318] log likelihood: -17779.791094
EM: Round [319] log likelihood: -17779.790064
EM: Round [320] log likelihood: -17779.789041
EM: Round [321] log likelihood: -17779.788025
EM: Round [322] log likelihood: -17779.787016
EM: Round [323] log likelihood: -17779.786013
EM: Round [324] log likelihood: -17779.785018
EM: Round [325] log likelihood: -17779.784029
EM: Round [326] log likelihood: -17779.783047
EM: Round [327] log likelihood: -17779.782072
EM: Round [328] log likelihood: -17779.781103
EM: Round [329] log likelihood: -17779.780141
EM: Round [330] log likelihood: -17779.779185
EM: Round [331] log likelihood: -17779.778236
EM: Round [332] log likelihood: -17779.777293
EM: Round [333] log likelihood: -17779.776357
EM: Round [334] log likelihood: -17779.775427
EM: Round [335] log likelihood: -17779.774503
EM: Round [336] log likelihood: -17779.773585
EM: Round [337] log likelihood: -17779.772674
EM: Round [338] log likelihood: -17779.771769
EM: Round [339] log likelihood: -17779.770869
EM: Round [340] log likelihood: -17779.769976
EM: Round [341] log likelihood: -17779.769089
EM: Round [342] log likelihood: -17779.768208
EM: Round [343] log likelihood: -17779.767333
EM: Round [344] log likelihood: -17779.766463
EM: Round [345] log likelihood: -17779.765600
EM: Round [346] log likelihood: -17779.764742
EM: Round [347] log likelihood: -17779.763890
EM: Round [348] log likelihood: -17779.763043
EM: Round [349] log likelihood: -17779.762202
EM: Round [350] log likelihood: -17779.761367
EM: Round [351] log likelihood: -17779.760538
EM: Round [352] log likelihood: -17779.759713
EM: Round [353] log likelihood: -17779.758895
EM: Round [354] log likelihood: -17779.758081
EM: Round [355] log likelihood: -17779.757274
EM: Round [356] log likelihood: -17779.756471
EM: Round [357] log likelihood: -17779.755674
EM: Round [358] log likelihood: -17779.754882
EM: Round [359] log likelihood: -17779.754095
EM: Round [360] log likelihood: -17779.753314
EM: Round [361] log likelihood: -17779.752538
EM: Round [362] log likelihood: -17779.751767
EM: Round [363] log likelihood: -17779.751000
EM: Round [364] log likelihood: -17779.750239
EM: Round [365] log likelihood: -17779.749483
EM: Round [366] log likelihood: -17779.748732
EM: Round [367] log likelihood: -17779.747986
EM: Round [368] log likelihood: -17779.747245
EM: Round [369] log likelihood: -17779.746508
EM: Round [370] log likelihood: -17779.745777
EM: Round [371] log likelihood: -17779.745050
EM: Round [372] log likelihood: -17779.744328
EM: Round [373] log likelihood: -17779.743611
EM: Round [374] log likelihood: -17779.742898
EM: Round [375] log likelihood: -17779.742190
EM: Round [376] log likelihood: -17779.741487
EM: Round [377] log likelihood: -17779.740788
EM: Round [378] log likelihood: -17779.740094
EM: Round [379] log likelihood: -17779.739404
EM: Round [380] log likelihood: -17779.738719
EM: Round [381] log likelihood: -17779.738038
EM: Round [382] log likelihood: -17779.737362
EM: Round [383] log likelihood: -17779.736690
EM: Round [384] log likelihood: -17779.736022
EM: Round [385] log likelihood: -17779.735359
EM: Round [386] log likelihood: -17779.734700
EM: Round [387] log likelihood: -17779.734045
EM: Round [388] log likelihood: -17779.733395
EM: Round [389] log likelihood: -17779.732749
EM: Round [390] log likelihood: -17779.732107
EM: Round [391] log likelihood: -17779.731469
EM: Round [392] log likelihood: -17779.730835
EM: Round [393] log likelihood: -17779.730205
EM: Round [394] log likelihood: -17779.729579
EM: Round [395] log likelihood: -17779.728958
EM: Round [396] log likelihood: -17779.728340
EM: Round [397] log likelihood: -17779.727726
EM: Round [398] log likelihood: -17779.727117
EM: Round [399] log likelihood: -17779.726511
EM: Round [400] log likelihood: -17779.725909
EM: Round [401] log likelihood: -17779.725311
EM: Round [402] log likelihood: -17779.724716
EM: Round [403] log likelihood: -17779.724126
EM: Round [404] log likelihood: -17779.723539
EM: Round [405] log likelihood: -17779.722956
EM: Round [406] log likelihood: -17779.722377
EM: Round [407] log likelihood: -17779.721802
EM: Round [408] log likelihood: -17779.721230
EM: Round [409] log likelihood: -17779.720662
EM: Round [410] log likelihood: -17779.720097
EM: Round [411] log likelihood: -17779.719536
EM: Round [412] log likelihood: -17779.718979
EM: Round [413] log likelihood: -17779.718425
EM: Round [414] log likelihood: -17779.717874
EM: Round [415] log likelihood: -17779.717328
EM: Round [416] log likelihood: -17779.716784
EM: Round [417] log likelihood: -17779.716244
EM: Round [418] log likelihood: -17779.715708
EM: Round [419] log likelihood: -17779.715175
EM: Round [420] log likelihood: -17779.714645
EM: Round [421] log likelihood: -17779.714118
EM: Round [422] log likelihood: -17779.713595
EM: Round [423] log likelihood: -17779.713076
EM: Round [424] log likelihood: -17779.712559
EM: Round [425] log likelihood: -17779.712046
EM: Round [426] log likelihood: -17779.711536
EM: Round [427] log likelihood: -17779.711029
EM: Round [428] log likelihood: -17779.710526
EM: Round [429] log likelihood: -17779.710025
EM: Round [430] log likelihood: -17779.709528
EM: Round [431] log likelihood: -17779.709034
EM: Round [432] log likelihood: -17779.708543
EM: Round [433] log likelihood: -17779.708055
EM: Round [434] log likelihood: -17779.707570
EM: Round [435] log likelihood: -17779.707088
EM: Round [436] log likelihood: -17779.706609
EM: Round [437] log likelihood: -17779.706134
EM: Round [438] log likelihood: -17779.705661
EM: Round [439] log likelihood: -17779.705191
EM: Round [440] log likelihood: -17779.704724
EM: Round [441] log likelihood: -17779.704260
EM: Round [442] log likelihood: -17779.703799
EM: Round [443] log likelihood: -17779.703341
EM: Round [444] log likelihood: -17779.702885
EM: Round [445] log likelihood: -17779.702433
EM: Round [446] log likelihood: -17779.701983
EM: Round [447] log likelihood: -17779.701536
EM: Round [448] log likelihood: -17779.701092
EM: Round [449] log likelihood: -17779.700650
EM: Round [450] log likelihood: -17779.700212
EM: Round [451] log likelihood: -17779.699776
EM: Round [452] log likelihood: -17779.699343
EM: Round [453] log likelihood: -17779.698912
EM: Round [454] log likelihood: -17779.698484
EM: Round [455] log likelihood: -17779.698059
EM: Round [456] log likelihood: -17779.697637
EM: Round [457] log likelihood: -17779.697217
EM: Round [458] log likelihood: -17779.696799
EM: Round [459] log likelihood: -17779.696385
EM: Round [460] log likelihood: -17779.695973
EM: Round [461] log likelihood: -17779.695563
EM: Round [462] log likelihood: -17779.695156
EM: Round [463] log likelihood: -17779.694751
EM: Round [464] log likelihood: -17779.694349
EM: Round [465] log likelihood: -17779.693950
EM: Round [466] log likelihood: -17779.693553
EM: Round [467] log likelihood: -17779.693158
EM: Round [468] log likelihood: -17779.692766
EM: Round [469] log likelihood: -17779.692376
EM: Round [470] log likelihood: -17779.691988
EM: Round [471] log likelihood: -17779.691603
EM: Round [472] log likelihood: -17779.691221
EM: Round [473] log likelihood: -17779.690840
EM: Round [474] log likelihood: -17779.690462
EM: Round [475] log likelihood: -17779.690087
EM: Round [476] log likelihood: -17779.689713
EM: Round [477] log likelihood: -17779.689342
EM: Round [478] log likelihood: -17779.688973
EM: Round [479] log likelihood: -17779.688607
EM: Round [480] log likelihood: -17779.688242
EM: Round [481] log likelihood: -17779.687880
EM: Round [482] log likelihood: -17779.687520
EM: Round [483] log likelihood: -17779.687163
EM: Round [484] log likelihood: -17779.686807
EM: Round [485] log likelihood: -17779.686454
EM: Round [486] log likelihood: -17779.686103
EM: Round [487] log likelihood: -17779.685754
EM: Round [488] log likelihood: -17779.685407
EM: Round [489] log likelihood: -17779.685062
EM: Round [490] log likelihood: -17779.684720
EM: Round [491] log likelihood: -17779.684379
EM: Round [492] log likelihood: -17779.684041
EM: Round [493] log likelihood: -17779.683704
EM: Round [494] log likelihood: -17779.683370
EM: Round [495] log likelihood: -17779.683037
EM: Round [496] log likelihood: -17779.682707
EM: Round [497] log likelihood: -17779.682379
EM: Round [498] log likelihood: -17779.682052
EM: Round [499] log likelihood: -17779.681728
EM: Round [500] log likelihood: -17779.681406
EM: Round [501] log likelihood: -17779.681085
EM: Round [502] log likelihood: -17779.680767
EM: Round [503] log likelihood: -17779.680450
EM: Round [504] log likelihood: -17779.680136
EM: Round [505] log likelihood: -17779.679823
EM: Round [506] log likelihood: -17779.679512
EM: Round [507] log likelihood: -17779.679203
EM: Round [508] log likelihood: -17779.678896
EM: Round [509] log likelihood: -17779.678591
EM: Round [510] log likelihood: -17779.678287
EM: Round [511] log likelihood: -17779.677986
EM: Round [512] log likelihood: -17779.677686
EM: Round [513] log likelihood: -17779.677388
EM: Round [514] log likelihood: -17779.677092
EM: Round [515] log likelihood: -17779.676798
EM: Round [516] log likelihood: -17779.676505
EM: Round [517] log likelihood: -17779.676214
EM: Round [518] log likelihood: -17779.675925
EM: Round [519] log likelihood: -17779.675638
EM: Round [520] log likelihood: -17779.675352
EM: Round [521] log likelihood: -17779.675068
EM: Round [522] log likelihood: -17779.674786
EM: Round [523] log likelihood: -17779.674506
EM: Round [524] log likelihood: -17779.674227
EM: Round [525] log likelihood: -17779.673950
EM: Round [526] log likelihood: -17779.673674
EM: Round [527] log likelihood: -17779.673400
EM: Round [528] log likelihood: -17779.673128
EM: Round [529] log likelihood: -17779.672858
EM: Round [530] log likelihood: -17779.672589
EM: Round [531] log likelihood: -17779.672321
EM: Round [532] log likelihood: -17779.672056
EM: Round [533] log likelihood: -17779.671792
EM: Round [534] log likelihood: -17779.671529
EM: Round [535] log likelihood: -17779.671268
EM: Round [536] log likelihood: -17779.671009
EM: Round [537] log likelihood: -17779.670751
EM: Round [538] log likelihood: -17779.670495
EM: Round [539] log likelihood: -17779.670240
EM: Round [540] log likelihood: -17779.669986
EM: Round [541] log likelihood: -17779.669735
EM: Round [542] log likelihood: -17779.669484
EM: Round [543] log likelihood: -17779.669236
EM: Round [544] log likelihood: -17779.668988
EM: Round [545] log likelihood: -17779.668743
EM: Round [546] log likelihood: -17779.668498
EM: Round [547] log likelihood: -17779.668255
EM: Round [548] log likelihood: -17779.668014
EM: Round [549] log likelihood: -17779.667774
EM: Round [550] log likelihood: -17779.667535
EM: Round [551] log likelihood: -17779.667298
EM: Round [552] log likelihood: -17779.667062
EM: Round [553] log likelihood: -17779.666828
EM: Round [554] log likelihood: -17779.666595
EM: Round [555] log likelihood: -17779.666363
EM: Round [556] log likelihood: -17779.666133
EM: Round [557] log likelihood: -17779.665904
EM: Round [558] log likelihood: -17779.665677
EM: Round [559] log likelihood: -17779.665451
EM: Round [560] log likelihood: -17779.665226
EM: Round [561] log likelihood: -17779.665002
EM: Round [562] log likelihood: -17779.664780
EM: Round [563] log likelihood: -17779.664559
EM: Round [564] log likelihood: -17779.664340
EM: Round [565] log likelihood: -17779.664122
EM: Round [566] log likelihood: -17779.663905
EM: Round [567] log likelihood: -17779.663689
EM: Round [568] log likelihood: -17779.663475
EM: Round [569] log likelihood: -17779.663262
EM: Round [570] log likelihood: -17779.663050
EM: Round [571] log likelihood: -17779.662839
EM: Round [572] log likelihood: -17779.662630
EM: Round [573] log likelihood: -17779.662422
EM: Round [574] log likelihood: -17779.662215
EM: Round [575] log likelihood: -17779.662009
EM: Round [576] log likelihood: -17779.661805
EM: Round [577] log likelihood: -17779.661601
EM: Round [578] log likelihood: -17779.661399
EM: Round [579] log likelihood: -17779.661198
EM: Round [580] log likelihood: -17779.660999
EM: Round [581] log likelihood: -17779.660800
EM: Round [582] log likelihood: -17779.660603
EM: Round [583] log likelihood: -17779.660406
EM: Round [584] log likelihood: -17779.660211
EM: Round [585] log likelihood: -17779.660018
EM: Round [586] log likelihood: -17779.659825
EM: Round [587] log likelihood: -17779.659633
EM: Round [588] log likelihood: -17779.659443
EM: Round [589] log likelihood: -17779.659253
EM: Round [590] log likelihood: -17779.659065
EM: Round [591] log likelihood: -17779.658878
EM: Round [592] log likelihood: -17779.658692
EM: Round [593] log likelihood: -17779.658507
EM: Round [594] log likelihood: -17779.658323
EM: Round [595] log likelihood: -17779.658140
EM: Round [596] log likelihood: -17779.657958
EM: Round [597] log likelihood: -17779.657778
EM: Round [598] log likelihood: -17779.657598
EM: Round [599] log likelihood: -17779.657419
EM: Round [600] log likelihood: -17779.657242
EM: Round [601] log likelihood: -17779.657065
EM: Round [602] log likelihood: -17779.656890
EM: Round [603] log likelihood: -17779.656715
EM: Round [604] log likelihood: -17779.656542
EM: Round [605] log likelihood: -17779.656369
EM: Round [606] log likelihood: -17779.656198
EM: Round [607] log likelihood: -17779.656028
EM: Round [608] log likelihood: -17779.655858
EM: Round [609] log likelihood: -17779.655690
EM: Round [610] log likelihood: -17779.655522
EM: Round [611] log likelihood: -17779.655356
EM: Round [612] log likelihood: -17779.655190
EM: Round [613] log likelihood: -17779.655026
EM: Round [614] log likelihood: -17779.654862
EM: Round [615] log likelihood: -17779.654700
EM: Round [616] log likelihood: -17779.654538
EM: Round [617] log likelihood: -17779.654377
EM: Round [618] log likelihood: -17779.654217
EM: Round [619] log likelihood: -17779.654059
EM: Round [620] log likelihood: -17779.653901
EM: Round [621] log likelihood: -17779.653744
EM: Round [622] log likelihood: -17779.653587
EM: Round [623] log likelihood: -17779.653432
EM: Round [624] log likelihood: -17779.653278
EM: Round [625] log likelihood: -17779.653124
EM: Round [626] log likelihood: -17779.652972
EM: Round [627] log likelihood: -17779.652820
EM: Round [628] log likelihood: -17779.652670
EM: Round [629] log likelihood: -17779.652520
EM: Round [630] log likelihood: -17779.652371
EM: Round [631] log likelihood: -17779.652222
EM: Round [632] log likelihood: -17779.652075
EM: Round [633] log likelihood: -17779.651929
EM: Round [634] log likelihood: -17779.651783
EM: Round [635] log likelihood: -17779.651638
EM: Round [636] log likelihood: -17779.651495
EM: Round [637] log likelihood: -17779.651351
EM: Round [638] log likelihood: -17779.651209
EM: Round [639] log likelihood: -17779.651068
EM: Round [640] log likelihood: -17779.650927
EM: Round [641] log likelihood: -17779.650787
EM: Round [642] log likelihood: -17779.650648
EM: Round [643] log likelihood: -17779.650510
EM: Round [644] log likelihood: -17779.650373
EM: Round [645] log likelihood: -17779.650236
EM: Round [646] log likelihood: -17779.650100
EM: Round [647] log likelihood: -17779.649965
EM: Round [648] log likelihood: -17779.649831
EM: Round [649] log likelihood: -17779.649698
EM: Round [650] log likelihood: -17779.649565
EM: Round [651] log likelihood: -17779.649433
EM: Round [652] log likelihood: -17779.649302
EM: Round [653] log likelihood: -17779.649171
EM: Round [654] log likelihood: -17779.649042
EM: Round [655] log likelihood: -17779.648913
EM: Round [656] log likelihood: -17779.648785
EM: Round [657] log likelihood: -17779.648657
EM: Round [658] log likelihood: -17779.648531
EM: Round [659] log likelihood: -17779.648405
EM: Round [660] log likelihood: -17779.648279
EM: Round [661] log likelihood: -17779.648155
EM: Round [662] log likelihood: -17779.648031
EM: Round [663] log likelihood: -17779.647908
EM: Round [664] log likelihood: -17779.647785
EM: Round [665] log likelihood: -17779.647664
EM: Round [666] log likelihood: -17779.647543
EM: Round [667] log likelihood: -17779.647422
EM: Round [668] log likelihood: -17779.647303
EM: Round [669] log likelihood: -17779.647184
EM: Round [670] log likelihood: -17779.647066
EM: Round [671] log likelihood: -17779.646948
EM: Round [672] log likelihood: -17779.646831
EM: Round [673] log likelihood: -17779.646715
EM: Round [674] log likelihood: -17779.646600
EM: Round [675] log likelihood: -17779.646485
EM: Round [676] log likelihood: -17779.646370
EM: Round [677] log likelihood: -17779.646257
EM: Round [678] log likelihood: -17779.646144
EM: Round [679] log likelihood: -17779.646032
EM: Round [680] log likelihood: -17779.645920
EM: Round [681] log likelihood: -17779.645809
EM: Round [682] log likelihood: -17779.645699
EM: Round [683] log likelihood: -17779.645589
EM: Round [684] log likelihood: -17779.645480
EM: Round [685] log likelihood: -17779.645372
EM: Round [686] log likelihood: -17779.645264
EM: Round [687] log likelihood: -17779.645156
EM: Round [688] log likelihood: -17779.645050
EM: Round [689] log likelihood: -17779.644944
EM: Round [690] log likelihood: -17779.644838
EM: Round [691] log likelihood: -17779.644734
EM: Round [692] log likelihood: -17779.644629
EM: Round [693] log likelihood: -17779.644526
EM: Round [694] log likelihood: -17779.644423
EM: Round [695] log likelihood: -17779.644320
EM: Round [696] log likelihood: -17779.644219
EM: Round [697] log likelihood: -17779.644117
EM: Round [698] log likelihood: -17779.644017
EM: Round [699] log likelihood: -17779.643917
EM: Round [700] log likelihood: -17779.643817
EM: Stopping iterations at round 700 due to insufficient improvement in likelihood.
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/init_EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/filter_by_frag_threshs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/prep_igv_extract_junc_reads.ok
Running: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam"
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
Execution Time = 0.00 minutes. CMD: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam"
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/prep_igv_junc_reads_bam.ok
Running: samtools index /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/samtools_idx_junc_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bed
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bed
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bed > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bed > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_reads.bam.tabix.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/span_reads_acc.ok
Running: samtools view -H /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools view -H /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/init_spanning_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam || :
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam || :
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/prep_spanning_reads.ok
Running: samtools index /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/samtools_index_span_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bed
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bed > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bed > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.spanning_reads.bam.tabix.ok
Running: cp /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/cp_consol_bam.ok
Running: samtools index /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam
Execution Time = 0.04 minutes. CMD: samtools index /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/index_consol_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam --max_insert_size 10000000
-extracting read coordinates from /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam into /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.read_coords
CMD: touch /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.read_coords > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.frag_coords > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.frag_coords.coord_sorted
Execution Time = 0.89 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam --max_insert_size 10000000
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/prep_igv_sam_frag_coordss.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.frag_coords > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.FusionJuncSpan
Execution Time = 0.02 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.frag_coords > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.FusionJuncSpan
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/prep_igv_juncspan_fmt.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.Pfam.gff3
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.Pfam.gff3
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/prep_igv_pfam_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.Pfam.gff3 > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.Pfam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.Pfam.gff3 > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.Pfam.bed
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/prep_igv_pfam_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.seqsimilar.gff3
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.seqsimilar.gff3
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/prep_igv_seqsim_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.seqsimilar.gff3 > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.seqsimilar.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.seqsimilar.gff3 > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.igv.seqsimilar.bed
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/prep_igv_seqsim_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa > /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/add_splice_info.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.kcRalF6c4R/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/blast_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir
-done, see /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/annot_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
EM: Starting log likelihood: -16710.025833
EM: Round [1] log likelihood: -16701.900955
EM: Round [2] log likelihood: -16701.896995
EM: Round [3] log likelihood: -16701.896979
EM: Stopping iterations at round 3 due to insufficient improvement in likelihood.
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
-total frags in /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz: 271802730
Execution Time = 5.52 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/add_FFPM.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa --gtf /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf > /tmp/nxf.kcRalF6c4R/fi_workdir/microH.dat
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fa --gtf /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf > /tmp/nxf.kcRalF6c4R/fi_workdir/microH.dat
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/microH.dat.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.kcRalF6c4R/fi_workdir/microH.dat /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.kcRalF6c4R/fi_workdir/microH.dat /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/append_microH_info.ok
Running: cp /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.tsv
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.tsv
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/cp_final.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/final.abridged.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.kcRalF6c4R --json_outfile /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_inspector_web.json --file_prefix 659_dRe-T1-TRNA-1_B23MHV2LT4_1
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.kcRalF6c4R --json_outfile /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_inspector_web.json --file_prefix 659_dRe-T1-TRNA-1_B23MHV2LT4_1
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/create_fi_igvjs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_inspector_web.json --input_file_prefix 659_dRe-T1-TRNA-1_B23MHV2LT4_1 --html_output /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_inspector_web.html
Warning - not locating file: /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gmap_trinity_GG.fusions.gff3.bed
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_inspector_web.json --input_file_prefix 659_dRe-T1-TRNA-1_B23MHV2LT4_1 --html_output /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fusion_inspector_web.html
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/fusion_reports_html.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv.annotated
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv.annotated
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/fusion_annotator.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
WARNING, no entry stored in dbm for [ENSG00000278097.1]
WARNING, no entry stored in dbm for [ENSG00000278097.1]
WARNING, no entry stored in dbm for [ENSG00000270025.2]
WARNING, no entry stored in dbm for [ENSG00000279058.2]
WARNING, no entry stored in dbm for [ENSG00000270025.2]
WARNING, no entry stored in dbm for [ENSG00000279058.2]
WARNING, no entry stored in dbm for [ENSG00000253396.1]
WARNING, no entry stored in dbm for [ENSG00000253396.1]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000253634.3]
WARNING, no entry stored in dbm for [ENSG00000253634.3]
WARNING, no entry stored in dbm for [ENSG00000253634.3]
WARNING, no entry stored in dbm for [ENSG00000253634.3]
WARNING, no entry stored in dbm for [ENSG00000253634.3]
WARNING, no entry stored in dbm for [ENSG00000248121.8]
WARNING, no entry stored in dbm for [ENSG00000248121.8]
WARNING, no entry stored in dbm for [ENSG00000248121.8]
WARNING, no entry stored in dbm for [ENSG00000251378.1]
WARNING, no entry stored in dbm for [ENSG00000251378.1]
WARNING, no entry stored in dbm for [ENSG00000284634.1]
WARNING, no entry stored in dbm for [ENSG00000284634.1]
WARNING, no entry stored in dbm for [ENSG00000284634.1]
WARNING, no entry stored in dbm for [ENSG00000284634.1]
WARNING, no entry stored in dbm for [ENSG00000284634.1]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286065.2]
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.kcRalF6c4R/ctat_genome_lib_build_dir > /tmp/nxf.kcRalF6c4R/659_dRe-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
Running: touch /tmp/nxf.kcRalF6c4R/chckpts_dir/fusion_coding_region_effect.ok
ls: cannot access 'IGV_inputs': No such file or directory