Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/f2fe8554f6b3f349cdcffa1aed284b/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/0b017a4850dd31340acbbe83c71ebc/659_bGc-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/f2fe8554f6b3f349cdcffa1aed284b/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/7986e41e4825955f6e70b00ce6b427/659_bGc-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
KIF5B--RET
starfusion
arriba
NOTCH2--NBPF11
starfusion
PTMS--MTRNR2L8
starfusion
GUSBP2--NAIP
starfusion
arriba
CLIC2--TMLHE-AS1
starfusion
arriba
TVP23C--CDRT4
starfusion
arriba
TLK2--LINC01002
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
STX16--NPEPL1
arriba
PCDHGA2--PCDHGA8
arriba
PCDHGA2--PCDHGA10
arriba
PCDHGA2--PCDHGC5
arriba
PCDHGA2--PCDHGC4
arriba
PCDHGA2--PCDHGB6
arriba
PCDHGA2--PCDHGA11
arriba
PCDHGA2--PCDHGA9
arriba
PCDHGA2--PCDHGB7
arriba
PCDHGA2--PCDHGA12
arriba
PCDHGA2--PCDHGC3
arriba
KLRC4--KLRK1
arriba
0%| | 0/29 [00:00<?, ?it/s]
Processing KIF5B--RET: 0%| | 0/29 [00:00<?, ?it/s]
Processing KIF5B--RET: 3%|▎ | 1/29 [00:00<00:03, 9.24it/s]
Processing NOTCH2--NBPF11: 3%|▎ | 1/29 [00:00<00:03, 9.24it/s]
Processing NOTCH2--NBPF11: 7%|▋ | 2/29 [00:00<00:02, 9.48it/s]
Processing PTMS--MTRNR2L8: 7%|▋ | 2/29 [00:00<00:02, 9.48it/s]
Processing PTMS--MTRNR2L8: 10%|█ | 3/29 [00:00<00:02, 9.56it/s]
Processing GUSBP2--NAIP: 10%|█ | 3/29 [00:00<00:02, 9.56it/s]
Processing GUSBP2--NAIP: 14%|█▍ | 4/29 [00:00<00:02, 9.60it/s]
Processing CLIC2--TMLHE-AS1: 14%|█▍ | 4/29 [00:00<00:02, 9.60it/s]
Processing CLIC2--TMLHE-AS1: 17%|█▋ | 5/29 [00:00<00:02, 9.62it/s]
Processing TVP23C--CDRT4: 17%|█▋ | 5/29 [00:00<00:02, 9.62it/s]
Processing TVP23C--CDRT4: 21%|██ | 6/29 [00:00<00:02, 9.63it/s]
Processing TLK2--LINC01002: 21%|██ | 6/29 [00:00<00:02, 9.63it/s]
Processing TLK2--LINC01002: 24%|██▍ | 7/29 [00:00<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA8: 24%|██▍ | 7/29 [00:00<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA8: 28%|██▊ | 8/29 [00:00<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 28%|██▊ | 8/29 [00:00<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 31%|███ | 9/29 [00:00<00:02, 9.65it/s]
Processing PCDHGB2--PCDHGC5: 31%|███ | 9/29 [00:00<00:02, 9.65it/s]
Processing PCDHGB2--PCDHGC5: 34%|███▍ | 10/29 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC4: 34%|███▍ | 10/29 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC4: 38%|███▊ | 11/29 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB6: 38%|███▊ | 11/29 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB6: 41%|████▏ | 12/29 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA11: 41%|████▏ | 12/29 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA11: 45%|████▍ | 13/29 [00:01<00:01, 9.66it/s]
Processing PCDHGB2--PCDHGA9: 45%|████▍ | 13/29 [00:01<00:01, 9.66it/s]
Processing PCDHGB2--PCDHGA9: 48%|████▊ | 14/29 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB7: 48%|████▊ | 14/29 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB7: 52%|█████▏ | 15/29 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA12: 52%|█████▏ | 15/29 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA12: 55%|█████▌ | 16/29 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC3: 55%|█████▌ | 16/29 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC3: 59%|█████▊ | 17/29 [00:01<00:01, 9.65it/s]
Processing STX16--NPEPL1: 59%|█████▊ | 17/29 [00:01<00:01, 9.65it/s]
Processing STX16--NPEPL1: 62%|██████▏ | 18/29 [00:01<00:01, 9.65it/s]
Processing PCDHGA2--PCDHGA8: 62%|██████▏ | 18/29 [00:01<00:01, 9.65it/s]
Processing PCDHGA2--PCDHGA8: 66%|██████▌ | 19/29 [00:01<00:01, 9.66it/s]
Processing PCDHGA2--PCDHGA10: 66%|██████▌ | 19/29 [00:01<00:01, 9.66it/s]
Processing PCDHGA2--PCDHGA10: 69%|██████▉ | 20/29 [00:02<00:00, 9.66it/s]
Processing PCDHGA2--PCDHGC5: 69%|██████▉ | 20/29 [00:02<00:00, 9.66it/s]
Processing PCDHGA2--PCDHGC5: 72%|███████▏ | 21/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGC4: 72%|███████▏ | 21/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGC4: 76%|███████▌ | 22/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGB6: 76%|███████▌ | 22/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGB6: 79%|███████▉ | 23/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGA11: 79%|███████▉ | 23/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGA11: 83%|████████▎ | 24/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGA9: 83%|████████▎ | 24/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGA9: 86%|████████▌ | 25/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGB7: 86%|████████▌ | 25/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGB7: 90%|████████▉ | 26/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGA12: 90%|████████▉ | 26/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGA12: 93%|█████████▎| 27/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGC3: 93%|█████████▎| 27/29 [00:02<00:00, 9.65it/s]
Processing PCDHGA2--PCDHGC3: 97%|█████████▋| 28/29 [00:02<00:00, 9.65it/s]
Processing KLRC4--KLRK1: 97%|█████████▋| 28/29 [00:02<00:00, 9.65it/s]
Processing KLRC4--KLRK1: 100%|██████████| 29/29 [00:03<00:00, 9.65it/s]
Processing KLRC4--KLRK1: 100%|██████████| 29/29 [00:03<00:00, 9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory