Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/2468dba02b1c7c435aaa42849e01e4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/2468dba02b1c7c435aaa42849e01e4/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/30c482b0eeb46b1cc8cde5ee0d24ff/659_Kh-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/e8/83b3d86dc9f1df6763490ba67ef20d/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)

  AIH curated blacklist: matched 0 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 6
  Pass (FILTER=PASS): 1 (16.7%)
  Fail (FILTER=FAIL): 5 (83.3%)

Failure reasons (top 15):
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
  total_reads_below_min(4.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 1

Breakdown by confidence:
  high: 1 pass, 1 fail (total: 2)
  low: 0 pass, 2 fail (total: 2)
  medium: 0 pass, 2 fail (total: 2)
Arriba filter: 6 rows -> 1 PASS; wrote 659_Kh-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered.tsv and 659_Kh-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_Kh-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filter_summary.txt