Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/a3dc7a64d4345de1317463f8489ab0/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/2c381b16883acc3311e13da77ff510/fi_workdir/659_ecd-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/a3dc7a64d4345de1317463f8489ab0/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 25795
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 25795
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:25795
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 5 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC012313.1--FRY HAVANA gene 22044 25734 . + . FI_gene_label "FRY^ENSG00000073910.23" ; ID "AC012313.1--FRY^FRY^ENSG00000073910.23" ; exon_id "ENSE00001591297.1" ; exon_number 1 ; gene_id "AC012313.1--FRY^FRY^ENSG00000073910.23" ; gene_name FRY ; gene_type protein_coding ; havana_gene "OTTHUMG00000016696.9" ; havana_transcript "OTTHUMT00000044407.2" ; hgnc_id "HGNC:20367" ; level 2 ; orig_coord_info "chr13,32061103,32061163,+" ; protein_id "ENSP00000398010.1" ; tag CAGE_supported_TSS mRNA_end_NF cds_end_NF not_organism_supported ; transcript_id "AC012313.1--FRY^ENST00000436046.1" ; transcript_name "FRY-204" ; transcript_support_level 5 ; transcript_type protein_coding
AC012313.1--FRY HAVANA mRNA 22044 25734 . + . FI_gene_label "FRY^ENSG00000073910.23" ; ID "AC012313.1--FRY^ENST00000436046.1" ; Parent "AC012313.1--FRY^FRY^ENSG00000073910.23" ; exon_id "ENSE00001591297.1" ; exon_number 1 ; gene_id "AC012313.1--FRY^FRY^ENSG00000073910.23" ; gene_name FRY ; gene_type protein_coding ; havana_gene "OTTHUMG00000016696.9" ; havana_transcript "OTTHUMT00000044407.2" ; hgnc_id "HGNC:20367" ; level 2 ; orig_coord_info "chr13,32061103,32061163,+" ; protein_id "ENSP00000398010.1" ; tag CAGE_supported_TSS mRNA_end_NF cds_end_NF not_organism_supported ; transcript_id "AC012313.1--FRY^ENST00000436046.1" ; transcript_name "FRY-204" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC025575.2--PTPRR HAVANA gene 6566 27276 . + . FI_gene_label "PTPRR^ENSG00000153233.13" ; ID "AC025575.2--PTPRR^PTPRR^ENSG00000153233.13" ; ccdsid "CCDS8998.1" ; exon_id "ENSE00001252923.3" ; exon_number 1 ; gene_id "AC025575.2--PTPRR^PTPRR^ENSG00000153233.13" ; gene_name PTPRR ; gene_type protein_coding ; havana_gene "OTTHUMG00000169502.3" ; havana_transcript "OTTHUMT00000404485.2" ; hgnc_id "HGNC:9680" ; level 2 ; orig_coord_info "chr12,70920333,70920390,-" ; protein_id "ENSP00000283228.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC025575.2--PTPRR^ENST00000283228.7" ; transcript_name "PTPRR-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC025575.2--PTPRR HAVANA mRNA 6566 27276 . + . FI_gene_label "PTPRR^ENSG00000153233.13" ; ID "AC025575.2--PTPRR^ENST00000283228.7" ; Parent "AC025575.2--PTPRR^PTPRR^ENSG00000153233.13" ; ccdsid "CCDS8998.1" ; exon_id "ENSE00001252923.3" ; exon_number 1 ; gene_id "AC025575.2--PTPRR^PTPRR^ENSG00000153233.13" ; gene_name PTPRR ; gene_type protein_coding ; havana_gene "OTTHUMG00000169502.3" ; havana_transcript "OTTHUMT00000404485.2" ; hgnc_id "HGNC:9680" ; level 2 ; orig_coord_info "chr12,70920333,70920390,-" ; protein_id "ENSP00000283228.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC025575.2--PTPRR^ENST00000283228.7" ; transcript_name "PTPRR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC060780.1--ANKS1A HAVANA gene 16125 43853 . + . FI_gene_label "ANKS1A^ENSG00000064999.15" ; ID "AC060780.1--ANKS1A^ANKS1A^ENSG00000064999.15" ; ccdsid "CCDS4798.1" ; exon_id "ENSE00003847126.1" ; exon_number 1 ; gene_id "AC060780.1--ANKS1A^ANKS1A^ENSG00000064999.15" ; gene_name ANKS1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014559.4" ; havana_transcript "OTTHUMT00000040262.3" ; hgnc_id "HGNC:20961" ; level 2 ; orig_coord_info "chr6,34889403,34889599,+" ; protein_id "ENSP00000353518.3" ; tag basic MANE_Select CCDS ; transcript_id "AC060780.1--ANKS1A^ENST00000360359.5" ; transcript_name "ANKS1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC060780.1--ANKS1A HAVANA mRNA 16125 43853 . + . FI_gene_label "ANKS1A^ENSG00000064999.15" ; ID "AC060780.1--ANKS1A^ENST00000360359.5" ; Parent "AC060780.1--ANKS1A^ANKS1A^ENSG00000064999.15" ; ccdsid "CCDS4798.1" ; exon_id "ENSE00003847126.1" ; exon_number 1 ; gene_id "AC060780.1--ANKS1A^ANKS1A^ENSG00000064999.15" ; gene_name ANKS1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014559.4" ; havana_transcript "OTTHUMT00000040262.3" ; hgnc_id "HGNC:20961" ; level 2 ; orig_coord_info "chr6,34889403,34889599,+" ; protein_id "ENSP00000353518.3" ; tag basic MANE_Select CCDS ; transcript_id "AC060780.1--ANKS1A^ENST00000360359.5" ; transcript_name "ANKS1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC068630.1--HORMAD1 HAVANA gene 5706 19170 . + . FI_gene_label "HORMAD1^ENSG00000143452.16" ; ID "AC068630.1--HORMAD1^HORMAD1^ENSG00000143452.16" ; ccdsid "CCDS55633.1" ; exon_id "ENSE00003622633.1" ; exon_number 2 ; gene_id "AC068630.1--HORMAD1^HORMAD1^ENSG00000143452.16" ; gene_name HORMAD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035005.3" ; havana_transcript "OTTHUMT00000084723.1" ; hgnc_id "HGNC:25245" ; level 2 ; orig_coord_info "chr1,150719473,150719505,-" ; protein_id "ENSP00000326489.7" ; tag basic CCDS ; transcript_id "AC068630.1--HORMAD1^ENST00000322343.11" ; transcript_name "HORMAD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC068630.1--HORMAD1 HAVANA mRNA 5706 19170 . + . FI_gene_label "HORMAD1^ENSG00000143452.16" ; ID "AC068630.1--HORMAD1^ENST00000322343.11" ; Parent "AC068630.1--HORMAD1^HORMAD1^ENSG00000143452.16" ; ccdsid "CCDS55633.1" ; exon_id "ENSE00003622633.1" ; exon_number 2 ; gene_id "AC068630.1--HORMAD1^HORMAD1^ENSG00000143452.16" ; gene_name HORMAD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035005.3" ; havana_transcript "OTTHUMT00000084723.1" ; hgnc_id "HGNC:25245" ; level 2 ; orig_coord_info "chr1,150719473,150719505,-" ; protein_id "ENSP00000326489.7" ; tag basic CCDS ; transcript_id "AC068630.1--HORMAD1^ENST00000322343.11" ; transcript_name "HORMAD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC090735.1--PRKCA HAVANA gene 5839 26060 . + . FI_gene_label "PRKCA^ENSG00000154229.12" ; ID "AC090735.1--PRKCA^PRKCA^ENSG00000154229.12" ; exon_id "ENSE00002685090.1" ; exon_number 1 ; gene_id "AC090735.1--PRKCA^PRKCA^ENSG00000154229.12" ; gene_name PRKCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000179533.3" ; havana_transcript "OTTHUMT00000446977.1" ; hgnc_id "HGNC:9393" ; level 2 ; orig_coord_info "chr17,66302860,66303024,+" ; protein_id "ENSP00000284384.6" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AC090735.1--PRKCA^ENST00000284384.6" ; transcript_name "PRKCA-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
AC090735.1--PRKCA HAVANA mRNA 5839 26060 . + . FI_gene_label "PRKCA^ENSG00000154229.12" ; ID "AC090735.1--PRKCA^ENST00000284384.6" ; Parent "AC090735.1--PRKCA^PRKCA^ENSG00000154229.12" ; exon_id "ENSE00002685090.1" ; exon_number 1 ; gene_id "AC090735.1--PRKCA^PRKCA^ENSG00000154229.12" ; gene_name PRKCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000179533.3" ; havana_transcript "OTTHUMT00000446977.1" ; hgnc_id "HGNC:9393" ; level 2 ; orig_coord_info "chr17,66302860,66303024,+" ; protein_id "ENSP00000284384.6" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AC090735.1--PRKCA^ENST00000284384.6" ; transcript_name "PRKCA-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
AC106707.1--IQCJ HAVANA gene 11600 16068 . + . FI_gene_label "IQCJ^ENSG00000214216.11" ; ID "AC106707.1--IQCJ^IQCJ^ENSG00000214216.11" ; ccdsid "CCDS46947.1" ; exon_id "ENSE00003909996.1" ; exon_number 1 ; gene_id "AC106707.1--IQCJ^IQCJ^ENSG00000214216.11" ; gene_name IQCJ ; gene_type protein_coding ; havana_gene "OTTHUMG00000166440.1" ; havana_transcript "OTTHUMT00000352396.1" ; hgnc_id "HGNC:32406" ; level 2 ; orig_coord_info "chr3,159069433,159069441,+" ; protein_id "ENSP00000380932.2" ; tag basic MANE_Select CCDS ; transcript_id "AC106707.1--IQCJ^ENST00000397832.7" ; transcript_name "IQCJ-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC106707.1--IQCJ HAVANA mRNA 11600 16068 . + . FI_gene_label "IQCJ^ENSG00000214216.11" ; ID "AC106707.1--IQCJ^ENST00000397832.7" ; Parent "AC106707.1--IQCJ^IQCJ^ENSG00000214216.11" ; ccdsid "CCDS46947.1" ; exon_id "ENSE00003909996.1" ; exon_number 1 ; gene_id "AC106707.1--IQCJ^IQCJ^ENSG00000214216.11" ; gene_name IQCJ ; gene_type protein_coding ; havana_gene "OTTHUMG00000166440.1" ; havana_transcript "OTTHUMT00000352396.1" ; hgnc_id "HGNC:32406" ; level 2 ; orig_coord_info "chr3,159069433,159069441,+" ; protein_id "ENSP00000380932.2" ; tag basic MANE_Select CCDS ; transcript_id "AC106707.1--IQCJ^ENST00000397832.7" ; transcript_name "IQCJ-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC106707.1--SCHIP1 HAVANA gene 10230 23874 . + . FI_gene_label "SCHIP1^ENSG00000151967.18" ; ID "AC106707.1--SCHIP1^SCHIP1^ENSG00000151967.18" ; ccdsid "CCDS56294.1" ; exon_id "ENSE00001923600.1" ; exon_number 1 ; gene_id "AC106707.1--SCHIP1^SCHIP1^ENSG00000151967.18" ; gene_name SCHIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158934.2" ; havana_transcript "OTTHUMT00000352560.1" ; hgnc_id "HGNC:15678" ; level 2 ; orig_coord_info "chr3,159840185,159840214,+" ; protein_id "ENSP00000404860.2" ; tag basic appris_principal_1 CCDS ; transcript_id "AC106707.1--SCHIP1^ENST00000445224.6" ; transcript_name "SCHIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC106707.1--SCHIP1 HAVANA mRNA 10230 23874 . + . FI_gene_label "SCHIP1^ENSG00000151967.18" ; ID "AC106707.1--SCHIP1^ENST00000445224.6" ; Parent "AC106707.1--SCHIP1^SCHIP1^ENSG00000151967.18" ; ccdsid "CCDS56294.1" ; exon_id "ENSE00001923600.1" ; exon_number 1 ; gene_id "AC106707.1--SCHIP1^SCHIP1^ENSG00000151967.18" ; gene_name SCHIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158934.2" ; havana_transcript "OTTHUMT00000352560.1" ; hgnc_id "HGNC:15678" ; level 2 ; orig_coord_info "chr3,159840185,159840214,+" ; protein_id "ENSP00000404860.2" ; tag basic appris_principal_1 CCDS ; transcript_id "AC106707.1--SCHIP1^ENST00000445224.6" ; transcript_name "SCHIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC233699.1--TBC1D3 HAVANA gene 12976 22908 . + . FI_gene_label "TBC1D3^ENSG00000274611.3" ; ID "AC233699.1--TBC1D3^TBC1D3^ENSG00000274611.3" ; ccdsid "CCDS45658.1" ; exon_id "ENSE00003731868.1" ; exon_number 2 ; gene_id "AC233699.1--TBC1D3^TBC1D3^ENSG00000274611.3" ; gene_name TBC1D3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188487.1" ; havana_transcript "OTTHUMT00000477408.1" ; hgnc_id "HGNC:19031" ; level 2 ; orig_coord_info "chr17,38190958,38191029,-" ; protein_id "ENSP00000478683.1" ; tag not_best_in_genome_evidence basic appris_principal_1 CCDS ; transcript_id "AC233699.1--TBC1D3^ENST00000620215.2" ; transcript_name "TBC1D3-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC233699.1--TBC1D3 HAVANA mRNA 12976 22908 . + . FI_gene_label "TBC1D3^ENSG00000274611.3" ; ID "AC233699.1--TBC1D3^ENST00000620215.2" ; Parent "AC233699.1--TBC1D3^TBC1D3^ENSG00000274611.3" ; ccdsid "CCDS45658.1" ; exon_id "ENSE00003731868.1" ; exon_number 2 ; gene_id "AC233699.1--TBC1D3^TBC1D3^ENSG00000274611.3" ; gene_name TBC1D3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188487.1" ; havana_transcript "OTTHUMT00000477408.1" ; hgnc_id "HGNC:19031" ; level 2 ; orig_coord_info "chr17,38190958,38191029,-" ; protein_id "ENSP00000478683.1" ; tag not_best_in_genome_evidence basic appris_principal_1 CCDS ; transcript_id "AC233699.1--TBC1D3^ENST00000620215.2" ; transcript_name "TBC1D3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC242842.2--RIIAD1 HAVANA gene 5051 14442 . + . FI_gene_label "RIIAD1^ENSG00000178796.13" ; ID "AC242842.2--RIIAD1^RIIAD1^ENSG00000178796.13" ; exon_id "ENSE00003672016.1" ; exon_number 4 ; gene_id "AC242842.2--RIIAD1^RIIAD1^ENSG00000178796.13" ; gene_name RIIAD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013055.5" ; havana_transcript "OTTHUMT00000036630.2" ; hgnc_id "HGNC:26686" ; level 2 ; orig_coord_info "chr1,151714509,151714529,+" ; protein_id "ENSP00000420280.1" ; tag NMD_exception basic appris_alternative_2 ; transcript_id "AC242842.2--RIIAD1^ENST00000326413.7" ; transcript_name "RIIAD1-201" ; transcript_support_level 2 ; transcript_type protein_coding
AC242842.2--RIIAD1 HAVANA mRNA 5051 14442 . + . FI_gene_label "RIIAD1^ENSG00000178796.13" ; ID "AC242842.2--RIIAD1^ENST00000326413.7" ; Parent "AC242842.2--RIIAD1^RIIAD1^ENSG00000178796.13" ; exon_id "ENSE00003672016.1" ; exon_number 4 ; gene_id "AC242842.2--RIIAD1^RIIAD1^ENSG00000178796.13" ; gene_name RIIAD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013055.5" ; havana_transcript "OTTHUMT00000036630.2" ; hgnc_id "HGNC:26686" ; level 2 ; orig_coord_info "chr1,151714509,151714529,+" ; protein_id "ENSP00000420280.1" ; tag NMD_exception basic appris_alternative_2 ; transcript_id "AC242842.2--RIIAD1^ENST00000326413.7" ; transcript_name "RIIAD1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AL391358.1--KLHL13 HAVANA gene 10245 22103 . + . FI_gene_label "KLHL13^ENSG00000003096.14" ; ID "AL391358.1--KLHL13^KLHL13^ENSG00000003096.14" ; ccdsid "CCDS14571.1" ; exon_id "ENSE00003503354.1" ; exon_number 1 ; gene_id "AL391358.1--KLHL13^KLHL13^ENSG00000003096.14" ; gene_name KLHL13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022252.4" ; havana_transcript "OTTHUMT00000057998.3" ; hgnc_id "HGNC:22931" ; level 2 ; orig_coord_info "chrX,117972731,117972828,-" ; protein_id "ENSP00000262820.3" ; tag basic appris_principal_1 CCDS ; transcript_id "AL391358.1--KLHL13^ENST00000262820.7" ; transcript_name "KLHL13-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL391358.1--KLHL13 HAVANA mRNA 10245 22103 . + . FI_gene_label "KLHL13^ENSG00000003096.14" ; ID "AL391358.1--KLHL13^ENST00000262820.7" ; Parent "AL391358.1--KLHL13^KLHL13^ENSG00000003096.14" ; ccdsid "CCDS14571.1" ; exon_id "ENSE00003503354.1" ; exon_number 1 ; gene_id "AL391358.1--KLHL13^KLHL13^ENSG00000003096.14" ; gene_name KLHL13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022252.4" ; havana_transcript "OTTHUMT00000057998.3" ; hgnc_id "HGNC:22931" ; level 2 ; orig_coord_info "chrX,117972731,117972828,-" ; protein_id "ENSP00000262820.3" ; tag basic appris_principal_1 CCDS ; transcript_id "AL391358.1--KLHL13^ENST00000262820.7" ; transcript_name "KLHL13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANP32E--LINC00869 HAVANA gene 1072 9630 . + . FI_gene_label "ANP32E^ENSG00000143401.15" ; ID "ANP32E--LINC00869^ANP32E^ENSG00000143401.15" ; exon_id "ENSE00001852063.1" ; exon_number 1 ; gene_id "ANP32E--LINC00869^ANP32E^ENSG00000143401.15" ; gene_name ANP32E ; gene_type protein_coding ; havana_gene "OTTHUMG00000012547.6" ; havana_transcript "OTTHUMT00000095851.1" ; hgnc_id "HGNC:16673" ; level 2 ; orig_coord_info "chr1,150235733,150235786,-" ; protein_id "ENSP00000358110.5" ; tag basic ; transcript_id "ANP32E--LINC00869^ENST00000369114.9" ; transcript_name "ANP32E-201" ; transcript_support_level 3 ; transcript_type protein_coding
ANP32E--LINC00869 HAVANA mRNA 1072 9630 . + . FI_gene_label "ANP32E^ENSG00000143401.15" ; ID "ANP32E--LINC00869^ENST00000369114.9" ; Parent "ANP32E--LINC00869^ANP32E^ENSG00000143401.15" ; exon_id "ENSE00001852063.1" ; exon_number 1 ; gene_id "ANP32E--LINC00869^ANP32E^ENSG00000143401.15" ; gene_name ANP32E ; gene_type protein_coding ; havana_gene "OTTHUMG00000012547.6" ; havana_transcript "OTTHUMT00000095851.1" ; hgnc_id "HGNC:16673" ; level 2 ; orig_coord_info "chr1,150235733,150235786,-" ; protein_id "ENSP00000358110.5" ; tag basic ; transcript_id "ANP32E--LINC00869^ENST00000369114.9" ; transcript_name "ANP32E-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
APOBEC3B--TNKS2 HAVANA gene 1001 7484 . + . FI_gene_label "APOBEC3B^ENSG00000179750.16" ; ID "APOBEC3B--TNKS2^APOBEC3B^ENSG00000179750.16" ; ccdsid "CCDS13982.1" ; exon_id "ENSE00001956540.1" ; exon_number 1 ; gene_id "APOBEC3B--TNKS2^APOBEC3B^ENSG00000179750.16" ; gene_name APOBEC3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151085.2" ; havana_transcript "OTTHUMT00000321233.2" ; hgnc_id "HGNC:17352" ; level 2 ; orig_coord_info "chr22,38982454,38982470,+" ; protein_id "ENSP00000327459.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "APOBEC3B--TNKS2^ENST00000333467.4" ; transcript_name "APOBEC3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
APOBEC3B--TNKS2 HAVANA mRNA 1001 7484 . + . FI_gene_label "APOBEC3B^ENSG00000179750.16" ; ID "APOBEC3B--TNKS2^ENST00000333467.4" ; Parent "APOBEC3B--TNKS2^APOBEC3B^ENSG00000179750.16" ; ccdsid "CCDS13982.1" ; exon_id "ENSE00001956540.1" ; exon_number 1 ; gene_id "APOBEC3B--TNKS2^APOBEC3B^ENSG00000179750.16" ; gene_name APOBEC3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151085.2" ; havana_transcript "OTTHUMT00000321233.2" ; hgnc_id "HGNC:17352" ; level 2 ; orig_coord_info "chr22,38982454,38982470,+" ; protein_id "ENSP00000327459.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "APOBEC3B--TNKS2^ENST00000333467.4" ; transcript_name "APOBEC3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
APOBEC3B--TNKS2 HAVANA gene 10510 38561 . + . FI_gene_label "TNKS2^ENSG00000107854.6" ; ID "APOBEC3B--TNKS2^TNKS2^ENSG00000107854.6" ; ccdsid "CCDS7417.1" ; exon_id "ENSE00001455758.4" ; exon_number 1 ; gene_id "APOBEC3B--TNKS2^TNKS2^ENSG00000107854.6" ; gene_name TNKS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018747.2" ; havana_transcript "OTTHUMT00000049374.2" ; hgnc_id "HGNC:15677" ; level 2 ; orig_coord_info "chr10,91798691,91798889,+" ; protein_id "ENSP00000360689.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "APOBEC3B--TNKS2^ENST00000371627.5" ; transcript_name "TNKS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
APOBEC3B--TNKS2 HAVANA mRNA 10510 38561 . + . FI_gene_label "TNKS2^ENSG00000107854.6" ; ID "APOBEC3B--TNKS2^ENST00000371627.5" ; Parent "APOBEC3B--TNKS2^TNKS2^ENSG00000107854.6" ; ccdsid "CCDS7417.1" ; exon_id "ENSE00001455758.4" ; exon_number 1 ; gene_id "APOBEC3B--TNKS2^TNKS2^ENSG00000107854.6" ; gene_name TNKS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018747.2" ; havana_transcript "OTTHUMT00000049374.2" ; hgnc_id "HGNC:15677" ; level 2 ; orig_coord_info "chr10,91798691,91798889,+" ; protein_id "ENSP00000360689.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "APOBEC3B--TNKS2^ENST00000371627.5" ; transcript_name "TNKS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARNT--PI4KB HAVANA gene 1130 24677 . + . FI_gene_label "ARNT^ENSG00000143437.21" ; ID "ARNT--PI4KB^ARNT^ENSG00000143437.21" ; ccdsid "CCDS65642.1" ; exon_id "ENSE00002072659.1" ; exon_number 1 ; gene_id "ARNT--PI4KB^ARNT^ENSG00000143437.21" ; gene_name ARNT ; gene_type protein_coding ; havana_gene "OTTHUMG00000035011.4" ; havana_transcript "OTTHUMT00000360630.1" ; hgnc_id "HGNC:700" ; level 1 ; orig_coord_info "chr1,150876543,150876567,-" ; protein_id "ENSP00000346372.2" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "ARNT--PI4KB^ENST00000354396.6" ; transcript_name "ARNT-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARNT--PI4KB HAVANA mRNA 1130 24677 . + . FI_gene_label "ARNT^ENSG00000143437.21" ; ID "ARNT--PI4KB^ENST00000354396.6" ; Parent "ARNT--PI4KB^ARNT^ENSG00000143437.21" ; ccdsid "CCDS65642.1" ; exon_id "ENSE00002072659.1" ; exon_number 1 ; gene_id "ARNT--PI4KB^ARNT^ENSG00000143437.21" ; gene_name ARNT ; gene_type protein_coding ; havana_gene "OTTHUMG00000035011.4" ; havana_transcript "OTTHUMT00000360630.1" ; hgnc_id "HGNC:700" ; level 1 ; orig_coord_info "chr1,150876543,150876567,-" ; protein_id "ENSP00000346372.2" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "ARNT--PI4KB^ENST00000354396.6" ; transcript_name "ARNT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARNT--PI4KB HAVANA gene 29120 44512 . + . FI_gene_label "PI4KB^ENSG00000143393.16" ; ID "ARNT--PI4KB^PI4KB^ENSG00000143393.16" ; ccdsid "CCDS55638.1" ; exon_id "ENSE00003463601.1" ; exon_number 4 ; gene_id "ARNT--PI4KB^PI4KB^ENSG00000143393.16" ; gene_name PI4KB ; gene_type protein_coding ; havana_gene "OTTHUMG00000012348.14" ; havana_transcript "OTTHUMT00000034403.1" ; hgnc_id "HGNC:8984" ; level 2 ; orig_coord_info "chr1,151315573,151316481,-" ; protein_id "ENSP00000357866.1" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "ARNT--PI4KB^ENST00000368872.5" ; transcript_name "PI4KB-201" ; transcript_support_level 5 ; transcript_type protein_coding
ARNT--PI4KB HAVANA mRNA 29120 44512 . + . FI_gene_label "PI4KB^ENSG00000143393.16" ; ID "ARNT--PI4KB^ENST00000368872.5" ; Parent "ARNT--PI4KB^PI4KB^ENSG00000143393.16" ; ccdsid "CCDS55638.1" ; exon_id "ENSE00003463601.1" ; exon_number 4 ; gene_id "ARNT--PI4KB^PI4KB^ENSG00000143393.16" ; gene_name PI4KB ; gene_type protein_coding ; havana_gene "OTTHUMG00000012348.14" ; havana_transcript "OTTHUMT00000034403.1" ; hgnc_id "HGNC:8984" ; level 2 ; orig_coord_info "chr1,151315573,151316481,-" ; protein_id "ENSP00000357866.1" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "ARNT--PI4KB^ENST00000368872.5" ; transcript_name "PI4KB-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ATP6V1D--TDP1 HAVANA gene 1462 12353 . + . FI_gene_label "ATP6V1D^ENSG00000100554.12" ; ID "ATP6V1D--TDP1^ATP6V1D^ENSG00000100554.12" ; ccdsid "CCDS9780.1" ; exon_id "ENSE00002463100.2" ; exon_number 1 ; gene_id "ATP6V1D--TDP1^ATP6V1D^ENSG00000100554.12" ; gene_name ATP6V1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000171244.3" ; havana_transcript "OTTHUMT00000412511.2" ; hgnc_id "HGNC:13527" ; level 2 ; orig_coord_info "chr14,67359658,67359698,-" ; protein_id "ENSP00000216442.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP6V1D--TDP1^ENST00000216442.12" ; transcript_name "ATP6V1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP6V1D--TDP1 HAVANA mRNA 1462 12353 . + . FI_gene_label "ATP6V1D^ENSG00000100554.12" ; ID "ATP6V1D--TDP1^ENST00000216442.12" ; Parent "ATP6V1D--TDP1^ATP6V1D^ENSG00000100554.12" ; ccdsid "CCDS9780.1" ; exon_id "ENSE00002463100.2" ; exon_number 1 ; gene_id "ATP6V1D--TDP1^ATP6V1D^ENSG00000100554.12" ; gene_name ATP6V1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000171244.3" ; havana_transcript "OTTHUMT00000412511.2" ; hgnc_id "HGNC:13527" ; level 2 ; orig_coord_info "chr14,67359658,67359698,-" ; protein_id "ENSP00000216442.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP6V1D--TDP1^ENST00000216442.12" ; transcript_name "ATP6V1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP6V1D--TDP1 HAVANA gene 21840 47421 . + . FI_gene_label "TDP1^ENSG00000042088.14" ; ID "ATP6V1D--TDP1^TDP1^ENSG00000042088.14" ; ccdsid "CCDS9888.1" ; exon_id "ENSE00003656623.1" ; exon_number 3 ; gene_id "ATP6V1D--TDP1^TDP1^ENSG00000042088.14" ; gene_name TDP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171016.4" ; havana_transcript "OTTHUMT00000411239.3" ; hgnc_id "HGNC:18884" ; level 2 ; orig_coord_info "chr14,89963115,89963673,+" ; protein_id "ENSP00000337353.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP6V1D--TDP1^ENST00000335725.9" ; transcript_name "TDP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP6V1D--TDP1 HAVANA mRNA 21840 47421 . + . FI_gene_label "TDP1^ENSG00000042088.14" ; ID "ATP6V1D--TDP1^ENST00000335725.9" ; Parent "ATP6V1D--TDP1^TDP1^ENSG00000042088.14" ; ccdsid "CCDS9888.1" ; exon_id "ENSE00003656623.1" ; exon_number 3 ; gene_id "ATP6V1D--TDP1^TDP1^ENSG00000042088.14" ; gene_name TDP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171016.4" ; havana_transcript "OTTHUMT00000411239.3" ; hgnc_id "HGNC:18884" ; level 2 ; orig_coord_info "chr14,89963115,89963673,+" ; protein_id "ENSP00000337353.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP6V1D--TDP1^ENST00000335725.9" ; transcript_name "TDP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAT2--PLEKHA4 HAVANA gene 12987 29711 . + . FI_gene_label "PLEKHA4^ENSG00000105559.12" ; ID "BCAT2--PLEKHA4^PLEKHA4^ENSG00000105559.12" ; ccdsid "CCDS12737.1" ; exon_id "ENSE00000718344.1" ; exon_number 2 ; gene_id "BCAT2--PLEKHA4^PLEKHA4^ENSG00000105559.12" ; gene_name PLEKHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183329.4" ; havana_transcript "OTTHUMT00000466216.2" ; hgnc_id "HGNC:14339" ; level 2 ; orig_coord_info "chr19,48867537,48867620,-" ; protein_id "ENSP00000263265.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BCAT2--PLEKHA4^ENST00000263265.11" ; transcript_name "PLEKHA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAT2--PLEKHA4 HAVANA mRNA 12987 29711 . + . FI_gene_label "PLEKHA4^ENSG00000105559.12" ; ID "BCAT2--PLEKHA4^ENST00000263265.11" ; Parent "BCAT2--PLEKHA4^PLEKHA4^ENSG00000105559.12" ; ccdsid "CCDS12737.1" ; exon_id "ENSE00000718344.1" ; exon_number 2 ; gene_id "BCAT2--PLEKHA4^PLEKHA4^ENSG00000105559.12" ; gene_name PLEKHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183329.4" ; havana_transcript "OTTHUMT00000466216.2" ; hgnc_id "HGNC:14339" ; level 2 ; orig_coord_info "chr19,48867537,48867620,-" ; protein_id "ENSP00000263265.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BCAT2--PLEKHA4^ENST00000263265.11" ; transcript_name "PLEKHA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAT2--PLEKHA4 HAVANA gene 1001 9984 . + . FI_gene_label "BCAT2^ENSG00000105552.15" ; ID "BCAT2--PLEKHA4^BCAT2^ENSG00000105552.15" ; ccdsid "CCDS12735.1" ; exon_id "ENSE00003562040.1" ; exon_number 1 ; gene_id "BCAT2--PLEKHA4^BCAT2^ENSG00000105552.15" ; gene_name BCAT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183327.4" ; havana_transcript "OTTHUMT00000466202.2" ; hgnc_id "HGNC:977" ; level 2 ; orig_coord_info "chr19,48810984,48811007,-" ; protein_id "ENSP00000322991.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BCAT2--PLEKHA4^ENST00000316273.11" ; transcript_name "BCAT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAT2--PLEKHA4 HAVANA mRNA 1001 9984 . + . FI_gene_label "BCAT2^ENSG00000105552.15" ; ID "BCAT2--PLEKHA4^ENST00000316273.11" ; Parent "BCAT2--PLEKHA4^BCAT2^ENSG00000105552.15" ; ccdsid "CCDS12735.1" ; exon_id "ENSE00003562040.1" ; exon_number 1 ; gene_id "BCAT2--PLEKHA4^BCAT2^ENSG00000105552.15" ; gene_name BCAT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183327.4" ; havana_transcript "OTTHUMT00000466202.2" ; hgnc_id "HGNC:977" ; level 2 ; orig_coord_info "chr19,48810984,48811007,-" ; protein_id "ENSP00000322991.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BCAT2--PLEKHA4^ENST00000316273.11" ; transcript_name "BCAT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BPNT2--CNBD1 HAVANA gene 1001 13444 . + . FI_gene_label "BPNT2^ENSG00000104331.9" ; ID "BPNT2--CNBD1^BPNT2^ENSG00000104331.9" ; ccdsid "CCDS6169.1" ; exon_id "ENSE00001252414.5" ; exon_number 1 ; gene_id "BPNT2--CNBD1^BPNT2^ENSG00000104331.9" ; gene_name BPNT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164415.2" ; havana_transcript "OTTHUMT00000378665.2" ; hgnc_id "HGNC:26019" ; level 2 ; orig_coord_info "chr8,56993199,56993585,-" ; protein_id "ENSP00000262644.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BPNT2--CNBD1^ENST00000262644.9" ; transcript_name "BPNT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BPNT2--CNBD1 HAVANA mRNA 1001 13444 . + . FI_gene_label "BPNT2^ENSG00000104331.9" ; ID "BPNT2--CNBD1^ENST00000262644.9" ; Parent "BPNT2--CNBD1^BPNT2^ENSG00000104331.9" ; ccdsid "CCDS6169.1" ; exon_id "ENSE00001252414.5" ; exon_number 1 ; gene_id "BPNT2--CNBD1^BPNT2^ENSG00000104331.9" ; gene_name BPNT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164415.2" ; havana_transcript "OTTHUMT00000378665.2" ; hgnc_id "HGNC:26019" ; level 2 ; orig_coord_info "chr8,56993199,56993585,-" ; protein_id "ENSP00000262644.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BPNT2--CNBD1^ENST00000262644.9" ; transcript_name "BPNT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BPNT2--CNBD1 HAVANA gene 16445 29549 . + . FI_gene_label "CNBD1^ENSG00000176571.12" ; ID "BPNT2--CNBD1^CNBD1^ENSG00000176571.12" ; ccdsid "CCDS55259.1" ; exon_id "ENSE00002089763.2" ; exon_number 1 ; gene_id "BPNT2--CNBD1^CNBD1^ENSG00000176571.12" ; gene_name CNBD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163743.6" ; havana_transcript "OTTHUMT00000375113.3" ; hgnc_id "HGNC:26663" ; level 2 ; orig_coord_info "chr8,86866496,86866583,+" ; protein_id "ENSP00000430073.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BPNT2--CNBD1^ENST00000518476.6" ; transcript_name "CNBD1-202" ; transcript_support_level 1 ; transcript_type protein_coding
BPNT2--CNBD1 HAVANA mRNA 16445 29549 . + . FI_gene_label "CNBD1^ENSG00000176571.12" ; ID "BPNT2--CNBD1^ENST00000518476.6" ; Parent "BPNT2--CNBD1^CNBD1^ENSG00000176571.12" ; ccdsid "CCDS55259.1" ; exon_id "ENSE00002089763.2" ; exon_number 1 ; gene_id "BPNT2--CNBD1^CNBD1^ENSG00000176571.12" ; gene_name CNBD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163743.6" ; havana_transcript "OTTHUMT00000375113.3" ; hgnc_id "HGNC:26663" ; level 2 ; orig_coord_info "chr8,86866496,86866583,+" ; protein_id "ENSP00000430073.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BPNT2--CNBD1^ENST00000518476.6" ; transcript_name "CNBD1-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CD46--SCCPDH HAVANA gene 1004 17560 . + . FI_gene_label "CD46^ENSG00000117335.20" ; ID "CD46--SCCPDH^CD46^ENSG00000117335.20" ; ccdsid "CCDS1482.1" ; exon_id "ENSE00001225216.2" ; exon_number 1 ; gene_id "CD46--SCCPDH^CD46^ENSG00000117335.20" ; gene_name CD46 ; gene_type protein_coding ; havana_gene "OTTHUMG00000036397.16" ; havana_transcript "OTTHUMT00000088893.1" ; hgnc_id "HGNC:6953" ; level 2 ; orig_coord_info "chr1,207752213,207752309,+" ; protein_id "ENSP00000313875.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "CD46--SCCPDH^ENST00000322875.8" ; transcript_name "CD46-201" ; transcript_support_level 1 ; transcript_type protein_coding
CD46--SCCPDH HAVANA mRNA 1004 17560 . + . FI_gene_label "CD46^ENSG00000117335.20" ; ID "CD46--SCCPDH^ENST00000322875.8" ; Parent "CD46--SCCPDH^CD46^ENSG00000117335.20" ; ccdsid "CCDS1482.1" ; exon_id "ENSE00001225216.2" ; exon_number 1 ; gene_id "CD46--SCCPDH^CD46^ENSG00000117335.20" ; gene_name CD46 ; gene_type protein_coding ; havana_gene "OTTHUMG00000036397.16" ; havana_transcript "OTTHUMT00000088893.1" ; hgnc_id "HGNC:6953" ; level 2 ; orig_coord_info "chr1,207752213,207752309,+" ; protein_id "ENSP00000313875.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "CD46--SCCPDH^ENST00000322875.8" ; transcript_name "CD46-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CD46--SCCPDH HAVANA gene 20561 32277 . + . FI_gene_label "SCCPDH^ENSG00000143653.10" ; ID "CD46--SCCPDH^SCCPDH^ENSG00000143653.10" ; ccdsid "CCDS31084.1" ; exon_id "ENSE00002081704.2" ; exon_number 1 ; gene_id "CD46--SCCPDH^SCCPDH^ENSG00000143653.10" ; gene_name SCCPDH ; gene_type protein_coding ; havana_gene "OTTHUMG00000040221.3" ; havana_transcript "OTTHUMT00000096902.3" ; hgnc_id "HGNC:24275" ; level 2 ; orig_coord_info "chr1,246724423,246724612,+" ; protein_id "ENSP00000355467.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CD46--SCCPDH^ENST00000366510.4" ; transcript_name "SCCPDH-201" ; transcript_support_level 1 ; transcript_type protein_coding
CD46--SCCPDH HAVANA mRNA 20561 32277 . + . FI_gene_label "SCCPDH^ENSG00000143653.10" ; ID "CD46--SCCPDH^ENST00000366510.4" ; Parent "CD46--SCCPDH^SCCPDH^ENSG00000143653.10" ; ccdsid "CCDS31084.1" ; exon_id "ENSE00002081704.2" ; exon_number 1 ; gene_id "CD46--SCCPDH^SCCPDH^ENSG00000143653.10" ; gene_name SCCPDH ; gene_type protein_coding ; havana_gene "OTTHUMG00000040221.3" ; havana_transcript "OTTHUMT00000096902.3" ; hgnc_id "HGNC:24275" ; level 2 ; orig_coord_info "chr1,246724423,246724612,+" ; protein_id "ENSP00000355467.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CD46--SCCPDH^ENST00000366510.4" ; transcript_name "SCCPDH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CD86--HORMAD1 ENSEMBL gene 2148 11437 . + . FI_gene_label "CD86^ENSG00000114013.16" ; ID "CD86--HORMAD1^CD86^ENSG00000114013.16" ; ccdsid "CCDS74991.1" ; exon_id "ENSE00003610807.1" ; exon_number 2 ; gene_id "CD86--HORMAD1^CD86^ENSG00000114013.16" ; gene_name CD86 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159482.4" ; hgnc_id "HGNC:1705" ; level 3 ; orig_coord_info "chr3,122091605,122091650,+" ; protein_id "ENSP00000264468.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "CD86--HORMAD1^ENST00000264468.9" ; transcript_name "CD86-201" ; transcript_support_level 5 ; transcript_type protein_coding
CD86--HORMAD1 ENSEMBL mRNA 2148 11437 . + . FI_gene_label "CD86^ENSG00000114013.16" ; ID "CD86--HORMAD1^ENST00000264468.9" ; Parent "CD86--HORMAD1^CD86^ENSG00000114013.16" ; ccdsid "CCDS74991.1" ; exon_id "ENSE00003610807.1" ; exon_number 2 ; gene_id "CD86--HORMAD1^CD86^ENSG00000114013.16" ; gene_name CD86 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159482.4" ; hgnc_id "HGNC:1705" ; level 3 ; orig_coord_info "chr3,122091605,122091650,+" ; protein_id "ENSP00000264468.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "CD86--HORMAD1^ENST00000264468.9" ; transcript_name "CD86-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CD86--HORMAD1 HAVANA gene 14448 27912 . + . FI_gene_label "HORMAD1^ENSG00000143452.16" ; ID "CD86--HORMAD1^HORMAD1^ENSG00000143452.16" ; ccdsid "CCDS55633.1" ; exon_id "ENSE00003622633.1" ; exon_number 2 ; gene_id "CD86--HORMAD1^HORMAD1^ENSG00000143452.16" ; gene_name HORMAD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035005.3" ; havana_transcript "OTTHUMT00000084723.1" ; hgnc_id "HGNC:25245" ; level 2 ; orig_coord_info "chr1,150719473,150719505,-" ; protein_id "ENSP00000326489.7" ; tag basic CCDS ; transcript_id "CD86--HORMAD1^ENST00000322343.11" ; transcript_name "HORMAD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CD86--HORMAD1 HAVANA mRNA 14448 27912 . + . FI_gene_label "HORMAD1^ENSG00000143452.16" ; ID "CD86--HORMAD1^ENST00000322343.11" ; Parent "CD86--HORMAD1^HORMAD1^ENSG00000143452.16" ; ccdsid "CCDS55633.1" ; exon_id "ENSE00003622633.1" ; exon_number 2 ; gene_id "CD86--HORMAD1^HORMAD1^ENSG00000143452.16" ; gene_name HORMAD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035005.3" ; havana_transcript "OTTHUMT00000084723.1" ; hgnc_id "HGNC:25245" ; level 2 ; orig_coord_info "chr1,150719473,150719505,-" ; protein_id "ENSP00000326489.7" ; tag basic CCDS ; transcript_id "CD86--HORMAD1^ENST00000322343.11" ; transcript_name "HORMAD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CDKAL1--BTBD9 HAVANA gene 1001 21482 . + . FI_gene_label "CDKAL1^ENSG00000145996.11" ; ID "CDKAL1--BTBD9^CDKAL1^ENSG00000145996.11" ; ccdsid "CCDS4546.1" ; exon_id "ENSE00003893317.1" ; exon_number 3 ; gene_id "CDKAL1--BTBD9^CDKAL1^ENSG00000145996.11" ; gene_name CDKAL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014340.2" ; havana_transcript "OTTHUMT00000504200.1" ; hgnc_id "HGNC:21050" ; level 2 ; orig_coord_info "chr6,20546351,20546523,+" ; protein_id "ENSP00000274695.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "CDKAL1--BTBD9^ENST00000274695.8" ; transcript_name "CDKAL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CDKAL1--BTBD9 HAVANA mRNA 1001 21482 . + . FI_gene_label "CDKAL1^ENSG00000145996.11" ; ID "CDKAL1--BTBD9^ENST00000274695.8" ; Parent "CDKAL1--BTBD9^CDKAL1^ENSG00000145996.11" ; ccdsid "CCDS4546.1" ; exon_id "ENSE00003893317.1" ; exon_number 3 ; gene_id "CDKAL1--BTBD9^CDKAL1^ENSG00000145996.11" ; gene_name CDKAL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014340.2" ; havana_transcript "OTTHUMT00000504200.1" ; hgnc_id "HGNC:21050" ; level 2 ; orig_coord_info "chr6,20546351,20546523,+" ; protein_id "ENSP00000274695.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "CDKAL1--BTBD9^ENST00000274695.8" ; transcript_name "CDKAL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CDKAL1--BTBD9 HAVANA gene 28244 49019 . + . FI_gene_label "BTBD9^ENSG00000183826.18" ; ID "CDKAL1--BTBD9^BTBD9^ENSG00000183826.18" ; ccdsid "CCDS43458.1" ; exon_id "ENSE00003787473.1" ; exon_number 2 ; gene_id "CDKAL1--BTBD9^BTBD9^ENSG00000183826.18" ; gene_name BTBD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014634.10" ; havana_transcript "OTTHUMT00000040432.2" ; hgnc_id "HGNC:21228" ; level 2 ; orig_coord_info "chr6,38593964,38594308,-" ; protein_id "ENSP00000323408.6" ; tag basic CCDS ; transcript_id "CDKAL1--BTBD9^ENST00000314100.10" ; transcript_name "BTBD9-201" ; transcript_support_level 1 ; transcript_type protein_coding
CDKAL1--BTBD9 HAVANA mRNA 28244 49019 . + . FI_gene_label "BTBD9^ENSG00000183826.18" ; ID "CDKAL1--BTBD9^ENST00000314100.10" ; Parent "CDKAL1--BTBD9^BTBD9^ENSG00000183826.18" ; ccdsid "CCDS43458.1" ; exon_id "ENSE00003787473.1" ; exon_number 2 ; gene_id "CDKAL1--BTBD9^BTBD9^ENSG00000183826.18" ; gene_name BTBD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014634.10" ; havana_transcript "OTTHUMT00000040432.2" ; hgnc_id "HGNC:21228" ; level 2 ; orig_coord_info "chr6,38593964,38594308,-" ; protein_id "ENSP00000323408.6" ; tag basic CCDS ; transcript_id "CDKAL1--BTBD9^ENST00000314100.10" ; transcript_name "BTBD9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHD1L--NBPF13P HAVANA gene 1028 25675 . + . FI_gene_label "CHD1L^ENSG00000131778.19" ; ID "CHD1L--NBPF13P^CHD1L^ENSG00000131778.19" ; exon_id "ENSE00003842686.1" ; exon_number 1 ; gene_id "CHD1L--NBPF13P^CHD1L^ENSG00000131778.19" ; gene_name CHD1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000150271.8" ; havana_transcript "OTTHUMT00000501825.1" ; hgnc_id "HGNC:1916" ; level 2 ; orig_coord_info "chr1,147242704,147242830,+" ; protein_id "ENSP00000355100.6" ; tag RNA_Seq_supported_only basic ; transcript_id "CHD1L--NBPF13P^ENST00000361293.10" ; transcript_name "CHD1L-201" ; transcript_support_level 2 ; transcript_type protein_coding
CHD1L--NBPF13P HAVANA mRNA 1028 25675 . + . FI_gene_label "CHD1L^ENSG00000131778.19" ; ID "CHD1L--NBPF13P^ENST00000361293.10" ; Parent "CHD1L--NBPF13P^CHD1L^ENSG00000131778.19" ; exon_id "ENSE00003842686.1" ; exon_number 1 ; gene_id "CHD1L--NBPF13P^CHD1L^ENSG00000131778.19" ; gene_name CHD1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000150271.8" ; havana_transcript "OTTHUMT00000501825.1" ; hgnc_id "HGNC:1916" ; level 2 ; orig_coord_info "chr1,147242704,147242830,+" ; protein_id "ENSP00000355100.6" ; tag RNA_Seq_supported_only basic ; transcript_id "CHD1L--NBPF13P^ENST00000361293.10" ; transcript_name "CHD1L-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CHD1L--PRKAB2 HAVANA gene 28768 39999 . + . FI_gene_label "PRKAB2^ENSG00000131791.8" ; ID "CHD1L--PRKAB2^PRKAB2^ENSG00000131791.8" ; ccdsid "CCDS925.1" ; exon_id "ENSE00003620866.1" ; exon_number 2 ; gene_id "CHD1L--PRKAB2^PRKAB2^ENSG00000131791.8" ; gene_name PRKAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014032.4" ; havana_transcript "OTTHUMT00000039471.3" ; hgnc_id "HGNC:9379" ; level 2 ; orig_coord_info "chr1,147171989,147172144,-" ; protein_id "ENSP00000254101.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CHD1L--PRKAB2^ENST00000254101.4" ; transcript_name "PRKAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CHD1L--PRKAB2 HAVANA mRNA 28768 39999 . + . FI_gene_label "PRKAB2^ENSG00000131791.8" ; ID "CHD1L--PRKAB2^ENST00000254101.4" ; Parent "CHD1L--PRKAB2^PRKAB2^ENSG00000131791.8" ; ccdsid "CCDS925.1" ; exon_id "ENSE00003620866.1" ; exon_number 2 ; gene_id "CHD1L--PRKAB2^PRKAB2^ENSG00000131791.8" ; gene_name PRKAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014032.4" ; havana_transcript "OTTHUMT00000039471.3" ; hgnc_id "HGNC:9379" ; level 2 ; orig_coord_info "chr1,147171989,147172144,-" ; protein_id "ENSP00000254101.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CHD1L--PRKAB2^ENST00000254101.4" ; transcript_name "PRKAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHD1L--PRKAB2 HAVANA gene 1028 25675 . + . FI_gene_label "CHD1L^ENSG00000131778.19" ; ID "CHD1L--PRKAB2^CHD1L^ENSG00000131778.19" ; exon_id "ENSE00003842686.1" ; exon_number 1 ; gene_id "CHD1L--PRKAB2^CHD1L^ENSG00000131778.19" ; gene_name CHD1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000150271.8" ; havana_transcript "OTTHUMT00000501825.1" ; hgnc_id "HGNC:1916" ; level 2 ; orig_coord_info "chr1,147242704,147242830,+" ; protein_id "ENSP00000355100.6" ; tag RNA_Seq_supported_only basic ; transcript_id "CHD1L--PRKAB2^ENST00000361293.10" ; transcript_name "CHD1L-201" ; transcript_support_level 2 ; transcript_type protein_coding
CHD1L--PRKAB2 HAVANA mRNA 1028 25675 . + . FI_gene_label "CHD1L^ENSG00000131778.19" ; ID "CHD1L--PRKAB2^ENST00000361293.10" ; Parent "CHD1L--PRKAB2^CHD1L^ENSG00000131778.19" ; exon_id "ENSE00003842686.1" ; exon_number 1 ; gene_id "CHD1L--PRKAB2^CHD1L^ENSG00000131778.19" ; gene_name CHD1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000150271.8" ; havana_transcript "OTTHUMT00000501825.1" ; hgnc_id "HGNC:1916" ; level 2 ; orig_coord_info "chr1,147242704,147242830,+" ; protein_id "ENSP00000355100.6" ; tag RNA_Seq_supported_only basic ; transcript_id "CHD1L--PRKAB2^ENST00000361293.10" ; transcript_name "CHD1L-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
COL1A1--SLC45A4 HAVANA gene 25435 34927 . + . FI_gene_label "SLC45A4^ENSG00000022567.10" ; ID "COL1A1--SLC45A4^SLC45A4^ENSG00000022567.10" ; ccdsid "CCDS34948.1" ; exon_id "ENSE00001475008.1" ; exon_number 1 ; gene_id "COL1A1--SLC45A4^SLC45A4^ENSG00000022567.10" ; gene_name SLC45A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164393.4" ; havana_transcript "OTTHUMT00000378571.3" ; hgnc_id "HGNC:29196" ; level 2 ; orig_coord_info "chr8,141228179,141228266,-" ; protein_id "ENSP00000024061.3" ; tag basic appris_principal_1 CCDS ; transcript_id "COL1A1--SLC45A4^ENST00000024061.7" ; transcript_name "SLC45A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
COL1A1--SLC45A4 HAVANA mRNA 25435 34927 . + . FI_gene_label "SLC45A4^ENSG00000022567.10" ; ID "COL1A1--SLC45A4^ENST00000024061.7" ; Parent "COL1A1--SLC45A4^SLC45A4^ENSG00000022567.10" ; ccdsid "CCDS34948.1" ; exon_id "ENSE00001475008.1" ; exon_number 1 ; gene_id "COL1A1--SLC45A4^SLC45A4^ENSG00000022567.10" ; gene_name SLC45A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164393.4" ; havana_transcript "OTTHUMT00000378571.3" ; hgnc_id "HGNC:29196" ; level 2 ; orig_coord_info "chr8,141228179,141228266,-" ; protein_id "ENSP00000024061.3" ; tag basic appris_principal_1 CCDS ; transcript_id "COL1A1--SLC45A4^ENST00000024061.7" ; transcript_name "SLC45A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COL1A1--SLC45A4 HAVANA gene 1002 18313 . + . FI_gene_label "COL1A1^ENSG00000108821.14" ; ID "COL1A1--SLC45A4^COL1A1^ENSG00000108821.14" ; ccdsid "CCDS11561.1" ; exon_id "ENSE00003500023.2" ; exon_number 1 ; gene_id "COL1A1--SLC45A4^COL1A1^ENSG00000108821.14" ; gene_name COL1A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000148674.9" ; havana_transcript "OTTHUMT00000309036.3" ; hgnc_id "HGNC:2197" ; level 2 ; orig_coord_info "chr17,50201411,50201513,-" ; protein_id "ENSP00000225964.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COL1A1--SLC45A4^ENST00000225964.10" ; transcript_name "COL1A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
COL1A1--SLC45A4 HAVANA mRNA 1002 18313 . + . FI_gene_label "COL1A1^ENSG00000108821.14" ; ID "COL1A1--SLC45A4^ENST00000225964.10" ; Parent "COL1A1--SLC45A4^COL1A1^ENSG00000108821.14" ; ccdsid "CCDS11561.1" ; exon_id "ENSE00003500023.2" ; exon_number 1 ; gene_id "COL1A1--SLC45A4^COL1A1^ENSG00000108821.14" ; gene_name COL1A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000148674.9" ; havana_transcript "OTTHUMT00000309036.3" ; hgnc_id "HGNC:2197" ; level 2 ; orig_coord_info "chr17,50201411,50201513,-" ; protein_id "ENSP00000225964.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COL1A1--SLC45A4^ENST00000225964.10" ; transcript_name "COL1A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CYCTP--PDE11A HAVANA gene 5632 45178 . + . FI_gene_label "PDE11A^ENSG00000128655.18" ; ID "CYCTP--PDE11A^PDE11A^ENSG00000128655.18" ; ccdsid "CCDS33334.1" ; exon_id "ENSE00001125342.6" ; exon_number 1 ; gene_id "CYCTP--PDE11A^PDE11A^ENSG00000128655.18" ; gene_name PDE11A ; gene_type protein_coding ; havana_gene "OTTHUMG00000154188.8" ; havana_transcript "OTTHUMT00000334313.3" ; hgnc_id "HGNC:8773" ; level 2 ; orig_coord_info "chr2,178071526,178072437,-" ; protein_id "ENSP00000286063.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CYCTP--PDE11A^ENST00000286063.11" ; transcript_name "PDE11A-201" ; transcript_support_level 1 ; transcript_type protein_coding
CYCTP--PDE11A HAVANA mRNA 5632 45178 . + . FI_gene_label "PDE11A^ENSG00000128655.18" ; ID "CYCTP--PDE11A^ENST00000286063.11" ; Parent "CYCTP--PDE11A^PDE11A^ENSG00000128655.18" ; ccdsid "CCDS33334.1" ; exon_id "ENSE00001125342.6" ; exon_number 1 ; gene_id "CYCTP--PDE11A^PDE11A^ENSG00000128655.18" ; gene_name PDE11A ; gene_type protein_coding ; havana_gene "OTTHUMG00000154188.8" ; havana_transcript "OTTHUMT00000334313.3" ; hgnc_id "HGNC:8773" ; level 2 ; orig_coord_info "chr2,178071526,178072437,-" ; protein_id "ENSP00000286063.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CYCTP--PDE11A^ENST00000286063.11" ; transcript_name "PDE11A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DOT1L--CLIP3 HAVANA gene 38003 47791 . + . FI_gene_label "CLIP3^ENSG00000105270.15" ; ID "DOT1L--CLIP3^CLIP3^ENSG00000105270.15" ; ccdsid "CCDS12486.1" ; exon_id "ENSE00002695934.1" ; exon_number 2 ; gene_id "DOT1L--CLIP3^CLIP3^ENSG00000105270.15" ; gene_name CLIP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181747.4" ; havana_transcript "OTTHUMT00000457426.2" ; hgnc_id "HGNC:24314" ; level 2 ; orig_coord_info "chr19,36032192,36032357,-" ; protein_id "ENSP00000353732.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DOT1L--CLIP3^ENST00000360535.9" ; transcript_name "CLIP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
DOT1L--CLIP3 HAVANA mRNA 38003 47791 . + . FI_gene_label "CLIP3^ENSG00000105270.15" ; ID "DOT1L--CLIP3^ENST00000360535.9" ; Parent "DOT1L--CLIP3^CLIP3^ENSG00000105270.15" ; ccdsid "CCDS12486.1" ; exon_id "ENSE00002695934.1" ; exon_number 2 ; gene_id "DOT1L--CLIP3^CLIP3^ENSG00000105270.15" ; gene_name CLIP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181747.4" ; havana_transcript "OTTHUMT00000457426.2" ; hgnc_id "HGNC:24314" ; level 2 ; orig_coord_info "chr19,36032192,36032357,-" ; protein_id "ENSP00000353732.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DOT1L--CLIP3^ENST00000360535.9" ; transcript_name "CLIP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DOT1L--CLIP3 HAVANA gene 1001 34532 . + . FI_gene_label "DOT1L^ENSG00000104885.18" ; ID "DOT1L--CLIP3^DOT1L^ENSG00000104885.18" ; ccdsid "CCDS42460.1" ; exon_id "ENSE00001215883.6" ; exon_number 1 ; gene_id "DOT1L--CLIP3^DOT1L^ENSG00000104885.18" ; gene_name DOT1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000150431.7" ; havana_transcript "OTTHUMT00000318066.2" ; hgnc_id "HGNC:24948" ; level 2 ; orig_coord_info "chr19,2164185,2164265,+" ; protein_id "ENSP00000381657.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DOT1L--CLIP3^ENST00000398665.8" ; transcript_name "DOT1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
DOT1L--CLIP3 HAVANA mRNA 1001 34532 . + . FI_gene_label "DOT1L^ENSG00000104885.18" ; ID "DOT1L--CLIP3^ENST00000398665.8" ; Parent "DOT1L--CLIP3^DOT1L^ENSG00000104885.18" ; ccdsid "CCDS42460.1" ; exon_id "ENSE00001215883.6" ; exon_number 1 ; gene_id "DOT1L--CLIP3^DOT1L^ENSG00000104885.18" ; gene_name DOT1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000150431.7" ; havana_transcript "OTTHUMT00000318066.2" ; hgnc_id "HGNC:24948" ; level 2 ; orig_coord_info "chr19,2164185,2164265,+" ; protein_id "ENSP00000381657.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DOT1L--CLIP3^ENST00000398665.8" ; transcript_name "DOT1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPHA5--RYR3 HAVANA gene 1153 27562 . + . FI_gene_label "EPHA5^ENSG00000145242.14" ; ID "EPHA5--RYR3^EPHA5^ENSG00000145242.14" ; ccdsid "CCDS3513.1" ; exon_id "ENSE00001816165.1" ; exon_number 1 ; gene_id "EPHA5--RYR3^EPHA5^ENSG00000145242.14" ; gene_name EPHA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129273.4" ; havana_transcript "OTTHUMT00000251388.2" ; hgnc_id "HGNC:3389" ; level 2 ; orig_coord_info "chr4,65669562,65669742,-" ; protein_id "ENSP00000273854.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "EPHA5--RYR3^ENST00000273854.7" ; transcript_name "EPHA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
EPHA5--RYR3 HAVANA mRNA 1153 27562 . + . FI_gene_label "EPHA5^ENSG00000145242.14" ; ID "EPHA5--RYR3^ENST00000273854.7" ; Parent "EPHA5--RYR3^EPHA5^ENSG00000145242.14" ; ccdsid "CCDS3513.1" ; exon_id "ENSE00001816165.1" ; exon_number 1 ; gene_id "EPHA5--RYR3^EPHA5^ENSG00000145242.14" ; gene_name EPHA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129273.4" ; havana_transcript "OTTHUMT00000251388.2" ; hgnc_id "HGNC:3389" ; level 2 ; orig_coord_info "chr4,65669562,65669742,-" ; protein_id "ENSP00000273854.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "EPHA5--RYR3^ENST00000273854.7" ; transcript_name "EPHA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPHA5--RYR3 HAVANA gene 30577 147967 . + . FI_gene_label "RYR3^ENSG00000198838.14" ; ID "EPHA5--RYR3^RYR3^ENSG00000198838.14" ; exon_id "ENSE00001540954.1" ; exon_number 1 ; gene_id "EPHA5--RYR3^RYR3^ENSG00000198838.14" ; gene_name RYR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172253.8" ; havana_transcript "OTTHUMT00000488324.1" ; hgnc_id "HGNC:10485" ; level 2 ; orig_coord_info "chr15,33311046,33311096,+" ; protein_id "ENSP00000373884.5" ; tag NAGNAG_splice_site not_organism_supported basic appris_alternative_2 ; transcript_id "EPHA5--RYR3^ENST00000389232.9" ; transcript_name "RYR3-201" ; transcript_support_level 5 ; transcript_type protein_coding
EPHA5--RYR3 HAVANA mRNA 30577 147967 . + . FI_gene_label "RYR3^ENSG00000198838.14" ; ID "EPHA5--RYR3^ENST00000389232.9" ; Parent "EPHA5--RYR3^RYR3^ENSG00000198838.14" ; exon_id "ENSE00001540954.1" ; exon_number 1 ; gene_id "EPHA5--RYR3^RYR3^ENSG00000198838.14" ; gene_name RYR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172253.8" ; havana_transcript "OTTHUMT00000488324.1" ; hgnc_id "HGNC:10485" ; level 2 ; orig_coord_info "chr15,33311046,33311096,+" ; protein_id "ENSP00000373884.5" ; tag NAGNAG_splice_site not_organism_supported basic appris_alternative_2 ; transcript_id "EPHA5--RYR3^ENST00000389232.9" ; transcript_name "RYR3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
EPS15L1--SLC35E1 HAVANA gene 1001 29097 . + . FI_gene_label "EPS15L1^ENSG00000127527.14" ; ID "EPS15L1--SLC35E1^EPS15L1^ENSG00000127527.14" ; ccdsid "CCDS32944.1" ; exon_id "ENSE00003174343.1" ; exon_number 1 ; gene_id "EPS15L1--SLC35E1^EPS15L1^ENSG00000127527.14" ; gene_name EPS15L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182361.3" ; havana_transcript "OTTHUMT00000461040.1" ; hgnc_id "HGNC:24634" ; level 2 ; orig_coord_info "chr19,16471913,16471945,-" ; protein_id "ENSP00000248070.5" ; tag basic CCDS ; transcript_id "EPS15L1--SLC35E1^ENST00000248070.10" ; transcript_name "EPS15L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EPS15L1--SLC35E1 HAVANA mRNA 1001 29097 . + . FI_gene_label "EPS15L1^ENSG00000127527.14" ; ID "EPS15L1--SLC35E1^ENST00000248070.10" ; Parent "EPS15L1--SLC35E1^EPS15L1^ENSG00000127527.14" ; ccdsid "CCDS32944.1" ; exon_id "ENSE00003174343.1" ; exon_number 1 ; gene_id "EPS15L1--SLC35E1^EPS15L1^ENSG00000127527.14" ; gene_name EPS15L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182361.3" ; havana_transcript "OTTHUMT00000461040.1" ; hgnc_id "HGNC:24634" ; level 2 ; orig_coord_info "chr19,16471913,16471945,-" ; protein_id "ENSP00000248070.5" ; tag basic CCDS ; transcript_id "EPS15L1--SLC35E1^ENST00000248070.10" ; transcript_name "EPS15L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPS15L1--SLC35E1 HAVANA gene 34592 46220 . + . FI_gene_label "SLC35E1^ENSG00000127526.15" ; ID "EPS15L1--SLC35E1^SLC35E1^ENSG00000127526.15" ; exon_id "ENSE00003050299.1" ; exon_number 1 ; gene_id "EPS15L1--SLC35E1^SLC35E1^ENSG00000127526.15" ; gene_name SLC35E1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152575.7" ; havana_transcript "OTTHUMT00000461121.1" ; hgnc_id "HGNC:20803" ; level 2 ; orig_coord_info "chr19,16571512,16571536,-" ; protein_id "ENSP00000387152.4" ; tag mRNA_start_NF cds_start_NF ; transcript_id "EPS15L1--SLC35E1^ENST00000409648.8" ; transcript_name "SLC35E1-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
EPS15L1--SLC35E1 HAVANA mRNA 34592 46220 . + . FI_gene_label "SLC35E1^ENSG00000127526.15" ; ID "EPS15L1--SLC35E1^ENST00000409648.8" ; Parent "EPS15L1--SLC35E1^SLC35E1^ENSG00000127526.15" ; exon_id "ENSE00003050299.1" ; exon_number 1 ; gene_id "EPS15L1--SLC35E1^SLC35E1^ENSG00000127526.15" ; gene_name SLC35E1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152575.7" ; havana_transcript "OTTHUMT00000461121.1" ; hgnc_id "HGNC:20803" ; level 2 ; orig_coord_info "chr19,16571512,16571536,-" ; protein_id "ENSP00000387152.4" ; tag mRNA_start_NF cds_start_NF ; transcript_id "EPS15L1--SLC35E1^ENST00000409648.8" ; transcript_name "SLC35E1-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
FBXO25--AL669831.1 HAVANA gene 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AL669831.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AL669831.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AL669831.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXO25--AL669831.1 HAVANA mRNA 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AL669831.1^ENST00000276326.9" ; Parent "FBXO25--AL669831.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AL669831.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AL669831.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FGFR3--TACC3 HAVANA gene 1020 10219 . + . FI_gene_label "FGFR3^ENSG00000068078.20" ; ID "FGFR3--TACC3^FGFR3^ENSG00000068078.20" ; exon_id "ENSE00001596390.1" ; exon_number 2 ; gene_id "FGFR3--TACC3^FGFR3^ENSG00000068078.20" ; gene_name FGFR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121148.7" ; havana_transcript "OTTHUMT00000495785.1" ; hgnc_id "HGNC:3690" ; level 2 ; orig_coord_info "chr4,1793935,1794043,+" ; protein_id "ENSP00000260795.3" ; transcript_id "FGFR3--TACC3^ENST00000260795.8" ; transcript_name "FGFR3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
FGFR3--TACC3 HAVANA mRNA 1020 10219 . + . FI_gene_label "FGFR3^ENSG00000068078.20" ; ID "FGFR3--TACC3^ENST00000260795.8" ; Parent "FGFR3--TACC3^FGFR3^ENSG00000068078.20" ; exon_id "ENSE00001596390.1" ; exon_number 2 ; gene_id "FGFR3--TACC3^FGFR3^ENSG00000068078.20" ; gene_name FGFR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121148.7" ; havana_transcript "OTTHUMT00000495785.1" ; hgnc_id "HGNC:3690" ; level 2 ; orig_coord_info "chr4,1793935,1794043,+" ; protein_id "ENSP00000260795.3" ; transcript_id "FGFR3--TACC3^ENST00000260795.8" ; transcript_name "FGFR3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
FGFR3--TACC3 HAVANA gene 16535 31742 . + . FI_gene_label "TACC3^ENSG00000013810.20" ; ID "FGFR3--TACC3^TACC3^ENSG00000013810.20" ; ccdsid "CCDS3352.1" ; exon_id "ENSE00003597099.1" ; exon_number 2 ; gene_id "FGFR3--TACC3^TACC3^ENSG00000013810.20" ; gene_name TACC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000089535.25" ; havana_transcript "OTTHUMT00000203730.4" ; hgnc_id "HGNC:11524" ; level 2 ; orig_coord_info "chr4,1723422,1723583,+" ; protein_id "ENSP00000326550.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "FGFR3--TACC3^ENST00000313288.9" ; transcript_name "TACC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
FGFR3--TACC3 HAVANA mRNA 16535 31742 . + . FI_gene_label "TACC3^ENSG00000013810.20" ; ID "FGFR3--TACC3^ENST00000313288.9" ; Parent "FGFR3--TACC3^TACC3^ENSG00000013810.20" ; ccdsid "CCDS3352.1" ; exon_id "ENSE00003597099.1" ; exon_number 2 ; gene_id "FGFR3--TACC3^TACC3^ENSG00000013810.20" ; gene_name TACC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000089535.25" ; havana_transcript "OTTHUMT00000203730.4" ; hgnc_id "HGNC:11524" ; level 2 ; orig_coord_info "chr4,1723422,1723583,+" ; protein_id "ENSP00000326550.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "FGFR3--TACC3^ENST00000313288.9" ; transcript_name "TACC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FNTB--FOXN3 HAVANA gene 1001 16861 . + . FI_gene_label "FNTB^ENSG00000257365.8" ; ID "FNTB--FOXN3^FNTB^ENSG00000257365.8" ; ccdsid "CCDS9769.1" ; exon_id "ENSE00000859806.6" ; exon_number 1 ; gene_id "FNTB--FOXN3^FNTB^ENSG00000257365.8" ; gene_name FNTB ; gene_type protein_coding ; havana_gene "OTTHUMG00000142811.6" ; havana_transcript "OTTHUMT00000286392.2" ; hgnc_id "HGNC:3785" ; level 2 ; orig_coord_info "chr14,64986954,64987097,+" ; protein_id "ENSP00000246166.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FNTB--FOXN3^ENST00000246166.3" ; transcript_name "FNTB-201" ; transcript_support_level 1 ; transcript_type protein_coding
FNTB--FOXN3 HAVANA mRNA 1001 16861 . + . FI_gene_label "FNTB^ENSG00000257365.8" ; ID "FNTB--FOXN3^ENST00000246166.3" ; Parent "FNTB--FOXN3^FNTB^ENSG00000257365.8" ; ccdsid "CCDS9769.1" ; exon_id "ENSE00000859806.6" ; exon_number 1 ; gene_id "FNTB--FOXN3^FNTB^ENSG00000257365.8" ; gene_name FNTB ; gene_type protein_coding ; havana_gene "OTTHUMG00000142811.6" ; havana_transcript "OTTHUMT00000286392.2" ; hgnc_id "HGNC:3785" ; level 2 ; orig_coord_info "chr14,64986954,64987097,+" ; protein_id "ENSP00000246166.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FNTB--FOXN3^ENST00000246166.3" ; transcript_name "FNTB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FNTB--FOXN3 ENSEMBL gene 24694 43601 . + . FI_gene_label "FOXN3^ENSG00000053254.16" ; ID "FNTB--FOXN3^FOXN3^ENSG00000053254.16" ; ccdsid "CCDS41977.1" ; exon_id "ENSE00001520549.2" ; exon_number 1 ; gene_id "FNTB--FOXN3^FOXN3^ENSG00000053254.16" ; gene_name FOXN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170898.4" ; hgnc_id "HGNC:1928" ; level 3 ; orig_coord_info "chr14,89411934,89412476,-" ; protein_id "ENSP00000261302.5" ; tag basic appris_principal_4 CCDS ; transcript_id "FNTB--FOXN3^ENST00000261302.9" ; transcript_name "FOXN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
FNTB--FOXN3 ENSEMBL mRNA 24694 43601 . + . FI_gene_label "FOXN3^ENSG00000053254.16" ; ID "FNTB--FOXN3^ENST00000261302.9" ; Parent "FNTB--FOXN3^FOXN3^ENSG00000053254.16" ; ccdsid "CCDS41977.1" ; exon_id "ENSE00001520549.2" ; exon_number 1 ; gene_id "FNTB--FOXN3^FOXN3^ENSG00000053254.16" ; gene_name FOXN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170898.4" ; hgnc_id "HGNC:1928" ; level 3 ; orig_coord_info "chr14,89411934,89412476,-" ; protein_id "ENSP00000261302.5" ; tag basic appris_principal_4 CCDS ; transcript_id "FNTB--FOXN3^ENST00000261302.9" ; transcript_name "FOXN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GPD1L--OSBPL10 HAVANA gene 1932 12937 . + . FI_gene_label "GPD1L^ENSG00000152642.11" ; ID "GPD1L--OSBPL10^GPD1L^ENSG00000152642.11" ; ccdsid "CCDS33729.1" ; exon_id "ENSE00001134616.4" ; exon_number 1 ; gene_id "GPD1L--OSBPL10^GPD1L^ENSG00000152642.11" ; gene_name GPD1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000155846.3" ; havana_transcript "OTTHUMT00000341975.2" ; hgnc_id "HGNC:28956" ; level 2 ; orig_coord_info "chr3,32106712,32106758,+" ; protein_id "ENSP00000282541.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GPD1L--OSBPL10^ENST00000282541.10" ; transcript_name "GPD1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
GPD1L--OSBPL10 HAVANA mRNA 1932 12937 . + . FI_gene_label "GPD1L^ENSG00000152642.11" ; ID "GPD1L--OSBPL10^ENST00000282541.10" ; Parent "GPD1L--OSBPL10^GPD1L^ENSG00000152642.11" ; ccdsid "CCDS33729.1" ; exon_id "ENSE00001134616.4" ; exon_number 1 ; gene_id "GPD1L--OSBPL10^GPD1L^ENSG00000152642.11" ; gene_name GPD1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000155846.3" ; havana_transcript "OTTHUMT00000341975.2" ; hgnc_id "HGNC:28956" ; level 2 ; orig_coord_info "chr3,32106712,32106758,+" ; protein_id "ENSP00000282541.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GPD1L--OSBPL10^ENST00000282541.10" ; transcript_name "GPD1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GPD1L--OSBPL10 HAVANA gene 18279 48540 . + . FI_gene_label "OSBPL10^ENSG00000144645.15" ; ID "GPD1L--OSBPL10^OSBPL10^ENSG00000144645.15" ; ccdsid "CCDS2651.1" ; exon_id "ENSE00001525447.2" ; exon_number 1 ; gene_id "GPD1L--OSBPL10^OSBPL10^ENSG00000144645.15" ; gene_name OSBPL10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130672.11" ; havana_transcript "OTTHUMT00000253165.2" ; hgnc_id "HGNC:16395" ; level 2 ; orig_coord_info "chr3,31980899,31981179,-" ; protein_id "ENSP00000379804.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GPD1L--OSBPL10^ENST00000396556.7" ; transcript_name "OSBPL10-201" ; transcript_support_level 1 ; transcript_type protein_coding
GPD1L--OSBPL10 HAVANA mRNA 18279 48540 . + . FI_gene_label "OSBPL10^ENSG00000144645.15" ; ID "GPD1L--OSBPL10^ENST00000396556.7" ; Parent "GPD1L--OSBPL10^OSBPL10^ENSG00000144645.15" ; ccdsid "CCDS2651.1" ; exon_id "ENSE00001525447.2" ; exon_number 1 ; gene_id "GPD1L--OSBPL10^OSBPL10^ENSG00000144645.15" ; gene_name OSBPL10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130672.11" ; havana_transcript "OTTHUMT00000253165.2" ; hgnc_id "HGNC:16395" ; level 2 ; orig_coord_info "chr3,31980899,31981179,-" ; protein_id "ENSP00000379804.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GPD1L--OSBPL10^ENST00000396556.7" ; transcript_name "OSBPL10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GPD1L--RPL21P40 HAVANA gene 1932 12937 . + . FI_gene_label "GPD1L^ENSG00000152642.11" ; ID "GPD1L--RPL21P40^GPD1L^ENSG00000152642.11" ; ccdsid "CCDS33729.1" ; exon_id "ENSE00001134616.4" ; exon_number 1 ; gene_id "GPD1L--RPL21P40^GPD1L^ENSG00000152642.11" ; gene_name GPD1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000155846.3" ; havana_transcript "OTTHUMT00000341975.2" ; hgnc_id "HGNC:28956" ; level 2 ; orig_coord_info "chr3,32106712,32106758,+" ; protein_id "ENSP00000282541.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GPD1L--RPL21P40^ENST00000282541.10" ; transcript_name "GPD1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
GPD1L--RPL21P40 HAVANA mRNA 1932 12937 . + . FI_gene_label "GPD1L^ENSG00000152642.11" ; ID "GPD1L--RPL21P40^ENST00000282541.10" ; Parent "GPD1L--RPL21P40^GPD1L^ENSG00000152642.11" ; ccdsid "CCDS33729.1" ; exon_id "ENSE00001134616.4" ; exon_number 1 ; gene_id "GPD1L--RPL21P40^GPD1L^ENSG00000152642.11" ; gene_name GPD1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000155846.3" ; havana_transcript "OTTHUMT00000341975.2" ; hgnc_id "HGNC:28956" ; level 2 ; orig_coord_info "chr3,32106712,32106758,+" ; protein_id "ENSP00000282541.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GPD1L--RPL21P40^ENST00000282541.10" ; transcript_name "GPD1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRIPAP1--PCSK1N HAVANA gene 25338 28679 . + . FI_gene_label "PCSK1N^ENSG00000102109.9" ; ID "GRIPAP1--PCSK1N^PCSK1N^ENSG00000102109.9" ; ccdsid "CCDS14307.1" ; exon_id "ENSE00001885508.2" ; exon_number 1 ; gene_id "GRIPAP1--PCSK1N^PCSK1N^ENSG00000102109.9" ; gene_name PCSK1N ; gene_type protein_coding ; havana_gene "OTTHUMG00000034502.4" ; havana_transcript "OTTHUMT00000083444.3" ; hgnc_id "HGNC:17301" ; level 2 ; orig_coord_info "chrX,48835419,48835532,-" ; protein_id "ENSP00000218230.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRIPAP1--PCSK1N^ENST00000218230.6" ; transcript_name "PCSK1N-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRIPAP1--PCSK1N HAVANA mRNA 25338 28679 . + . FI_gene_label "PCSK1N^ENSG00000102109.9" ; ID "GRIPAP1--PCSK1N^ENST00000218230.6" ; Parent "GRIPAP1--PCSK1N^PCSK1N^ENSG00000102109.9" ; ccdsid "CCDS14307.1" ; exon_id "ENSE00001885508.2" ; exon_number 1 ; gene_id "GRIPAP1--PCSK1N^PCSK1N^ENSG00000102109.9" ; gene_name PCSK1N ; gene_type protein_coding ; havana_gene "OTTHUMG00000034502.4" ; havana_transcript "OTTHUMT00000083444.3" ; hgnc_id "HGNC:17301" ; level 2 ; orig_coord_info "chrX,48835419,48835532,-" ; protein_id "ENSP00000218230.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRIPAP1--PCSK1N^ENST00000218230.6" ; transcript_name "PCSK1N-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRIPAP1--PCSK1N HAVANA gene 1001 22334 . + . FI_gene_label "GRIPAP1^ENSG00000068400.13" ; ID "GRIPAP1--PCSK1N^GRIPAP1^ENSG00000068400.13" ; ccdsid "CCDS35248.1" ; exon_id "ENSE00003059456.1" ; exon_number 1 ; gene_id "GRIPAP1--PCSK1N^GRIPAP1^ENSG00000068400.13" ; gene_name GRIPAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033192.10" ; havana_transcript "OTTHUMT00000080970.3" ; hgnc_id "HGNC:18706" ; level 2 ; orig_coord_info "chrX,49002188,49002229,-" ; protein_id "ENSP00000365606.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GRIPAP1--PCSK1N^ENST00000376423.8" ; transcript_name "GRIPAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRIPAP1--PCSK1N HAVANA mRNA 1001 22334 . + . FI_gene_label "GRIPAP1^ENSG00000068400.13" ; ID "GRIPAP1--PCSK1N^ENST00000376423.8" ; Parent "GRIPAP1--PCSK1N^GRIPAP1^ENSG00000068400.13" ; ccdsid "CCDS35248.1" ; exon_id "ENSE00003059456.1" ; exon_number 1 ; gene_id "GRIPAP1--PCSK1N^GRIPAP1^ENSG00000068400.13" ; gene_name GRIPAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033192.10" ; havana_transcript "OTTHUMT00000080970.3" ; hgnc_id "HGNC:18706" ; level 2 ; orig_coord_info "chrX,49002188,49002229,-" ; protein_id "ENSP00000365606.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GRIPAP1--PCSK1N^ENST00000376423.8" ; transcript_name "GRIPAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GUCY1B2--NKAIN2 HAVANA gene 24657 32303 . + . FI_gene_label "NKAIN2^ENSG00000188580.15" ; ID "GUCY1B2--NKAIN2^NKAIN2^ENSG00000188580.15" ; exon_id "ENSE00003552753.1" ; exon_number 1 ; gene_id "GUCY1B2--NKAIN2^NKAIN2^ENSG00000188580.15" ; gene_name NKAIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015500.3" ; havana_transcript "OTTHUMT00000042056.1" ; hgnc_id "HGNC:16443" ; level 2 ; orig_coord_info "chr6,123804201,123804254,+" ; protein_id "ENSP00000357401.1" ; tag basic ; transcript_id "GUCY1B2--NKAIN2^ENST00000368416.5" ; transcript_name "NKAIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GUCY1B2--NKAIN2 HAVANA mRNA 24657 32303 . + . FI_gene_label "NKAIN2^ENSG00000188580.15" ; ID "GUCY1B2--NKAIN2^ENST00000368416.5" ; Parent "GUCY1B2--NKAIN2^NKAIN2^ENSG00000188580.15" ; exon_id "ENSE00003552753.1" ; exon_number 1 ; gene_id "GUCY1B2--NKAIN2^NKAIN2^ENSG00000188580.15" ; gene_name NKAIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015500.3" ; havana_transcript "OTTHUMT00000042056.1" ; hgnc_id "HGNC:16443" ; level 2 ; orig_coord_info "chr6,123804201,123804254,+" ; protein_id "ENSP00000357401.1" ; tag basic ; transcript_id "GUCY1B2--NKAIN2^ENST00000368416.5" ; transcript_name "NKAIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
H2BC21--SETDB1 HAVANA gene 6271 26374 . + . FI_gene_label "SETDB1^ENSG00000143379.12" ; ID "H2BC21--SETDB1^SETDB1^ENSG00000143379.12" ; ccdsid "CCDS44217.1" ; exon_id "ENSE00003524194.1" ; exon_number 2 ; gene_id "H2BC21--SETDB1^SETDB1^ENSG00000143379.12" ; gene_name SETDB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035003.7" ; havana_transcript "OTTHUMT00000084717.2" ; hgnc_id "HGNC:10761" ; level 2 ; orig_coord_info "chr1,150927715,150927974,+" ; protein_id "ENSP00000271640.5" ; tag basic appris_principal_2 CCDS ; transcript_id "H2BC21--SETDB1^ENST00000271640.9" ; transcript_name "SETDB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
H2BC21--SETDB1 HAVANA mRNA 6271 26374 . + . FI_gene_label "SETDB1^ENSG00000143379.12" ; ID "H2BC21--SETDB1^ENST00000271640.9" ; Parent "H2BC21--SETDB1^SETDB1^ENSG00000143379.12" ; ccdsid "CCDS44217.1" ; exon_id "ENSE00003524194.1" ; exon_number 2 ; gene_id "H2BC21--SETDB1^SETDB1^ENSG00000143379.12" ; gene_name SETDB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035003.7" ; havana_transcript "OTTHUMT00000084717.2" ; hgnc_id "HGNC:10761" ; level 2 ; orig_coord_info "chr1,150927715,150927974,+" ; protein_id "ENSP00000271640.5" ; tag basic appris_principal_2 CCDS ; transcript_id "H2BC21--SETDB1^ENST00000271640.9" ; transcript_name "SETDB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
H2BC21--SETDB1 HAVANA gene 1001 3194 . + . FI_gene_label "H2BC21^ENSG00000184678.10" ; ID "H2BC21--SETDB1^H2BC21^ENSG00000184678.10" ; ccdsid "CCDS936.1" ; exon_id "ENSE00001448926.3" ; exon_number 1 ; gene_id "H2BC21--SETDB1^H2BC21^ENSG00000184678.10" ; gene_name H2BC21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012095.1" ; havana_transcript "OTTHUMT00000033455.1" ; hgnc_id "HGNC:4760" ; level 2 ; orig_coord_info "chr1,149886263,149886640,-" ; protein_id "ENSP00000358151.2" ; tag basic appris_principal_1 CCDS ; transcript_id "H2BC21--SETDB1^ENST00000369155.3" ; transcript_name "H2BC21-201" ; transcript_support_level NA ; transcript_type protein_coding
H2BC21--SETDB1 HAVANA mRNA 1001 3194 . + . FI_gene_label "H2BC21^ENSG00000184678.10" ; ID "H2BC21--SETDB1^ENST00000369155.3" ; Parent "H2BC21--SETDB1^H2BC21^ENSG00000184678.10" ; ccdsid "CCDS936.1" ; exon_id "ENSE00001448926.3" ; exon_number 1 ; gene_id "H2BC21--SETDB1^H2BC21^ENSG00000184678.10" ; gene_name H2BC21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012095.1" ; havana_transcript "OTTHUMT00000033455.1" ; hgnc_id "HGNC:4760" ; level 2 ; orig_coord_info "chr1,149886263,149886640,-" ; protein_id "ENSP00000358151.2" ; tag basic appris_principal_1 CCDS ; transcript_id "H2BC21--SETDB1^ENST00000369155.3" ; transcript_name "H2BC21-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
HERPUD1--SLC12A3 HAVANA gene 14584 41092 . + . FI_gene_label "SLC12A3^ENSG00000070915.10" ; ID "HERPUD1--SLC12A3^SLC12A3^ENSG00000070915.10" ; exon_id "ENSE00001926452.2" ; exon_number 1 ; gene_id "HERPUD1--SLC12A3^SLC12A3^ENSG00000070915.10" ; gene_name SLC12A3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133284.3" ; havana_transcript "OTTHUMT00000432338.1" ; hgnc_id "HGNC:10912" ; level 2 ; orig_coord_info "chr16,56865236,56865517,+" ; protein_id "ENSP00000262502.5" ; tag NAGNAG_splice_site not_organism_supported basic ; transcript_id "HERPUD1--SLC12A3^ENST00000262502.5" ; transcript_name "SLC12A3-201" ; transcript_support_level 5 ; transcript_type protein_coding
HERPUD1--SLC12A3 HAVANA mRNA 14584 41092 . + . FI_gene_label "SLC12A3^ENSG00000070915.10" ; ID "HERPUD1--SLC12A3^ENST00000262502.5" ; Parent "HERPUD1--SLC12A3^SLC12A3^ENSG00000070915.10" ; exon_id "ENSE00001926452.2" ; exon_number 1 ; gene_id "HERPUD1--SLC12A3^SLC12A3^ENSG00000070915.10" ; gene_name SLC12A3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133284.3" ; havana_transcript "OTTHUMT00000432338.1" ; hgnc_id "HGNC:10912" ; level 2 ; orig_coord_info "chr16,56865236,56865517,+" ; protein_id "ENSP00000262502.5" ; tag NAGNAG_splice_site not_organism_supported basic ; transcript_id "HERPUD1--SLC12A3^ENST00000262502.5" ; transcript_name "SLC12A3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
HERPUD1--SLC12A3 HAVANA gene 1006 10596 . + . FI_gene_label "HERPUD1^ENSG00000051108.15" ; ID "HERPUD1--SLC12A3^HERPUD1^ENSG00000051108.15" ; ccdsid "CCDS45492.1" ; exon_id "ENSE00003459441.1" ; exon_number 1 ; gene_id "HERPUD1--SLC12A3^HERPUD1^ENSG00000051108.15" ; gene_name HERPUD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133276.10" ; havana_transcript "OTTHUMT00000432314.1" ; hgnc_id "HGNC:13744" ; level 2 ; orig_coord_info "chr16,56932245,56932391,+" ; protein_id "ENSP00000300302.5" ; tag NAGNAG_splice_site basic appris_alternative_2 CCDS ; transcript_id "HERPUD1--SLC12A3^ENST00000300302.9" ; transcript_name "HERPUD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
HERPUD1--SLC12A3 HAVANA mRNA 1006 10596 . + . FI_gene_label "HERPUD1^ENSG00000051108.15" ; ID "HERPUD1--SLC12A3^ENST00000300302.9" ; Parent "HERPUD1--SLC12A3^HERPUD1^ENSG00000051108.15" ; ccdsid "CCDS45492.1" ; exon_id "ENSE00003459441.1" ; exon_number 1 ; gene_id "HERPUD1--SLC12A3^HERPUD1^ENSG00000051108.15" ; gene_name HERPUD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133276.10" ; havana_transcript "OTTHUMT00000432314.1" ; hgnc_id "HGNC:13744" ; level 2 ; orig_coord_info "chr16,56932245,56932391,+" ; protein_id "ENSP00000300302.5" ; tag NAGNAG_splice_site basic appris_alternative_2 CCDS ; transcript_id "HERPUD1--SLC12A3^ENST00000300302.9" ; transcript_name "HERPUD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HYDIN--ZNF148 HAVANA gene 1022 24038 . + . FI_gene_label "HYDIN^ENSG00000157423.18" ; ID "HYDIN--ZNF148^HYDIN^ENSG00000157423.18" ; exon_id "ENSE00002238007.1" ; exon_number 1 ; gene_id "HYDIN--ZNF148^HYDIN^ENSG00000157423.18" ; gene_name HYDIN ; gene_type protein_coding ; havana_gene "OTTHUMG00000137584.14" ; havana_transcript "OTTHUMT00000398682.2" ; hgnc_id "HGNC:19368" ; level 2 ; orig_coord_info "chr16,71230660,71230687,-" ; protein_id "ENSP00000288168.10" ; tag basic ; transcript_id "HYDIN--ZNF148^ENST00000288168.14" ; transcript_name "HYDIN-201" ; transcript_support_level 1 ; transcript_type protein_coding
HYDIN--ZNF148 HAVANA mRNA 1022 24038 . + . FI_gene_label "HYDIN^ENSG00000157423.18" ; ID "HYDIN--ZNF148^ENST00000288168.14" ; Parent "HYDIN--ZNF148^HYDIN^ENSG00000157423.18" ; exon_id "ENSE00002238007.1" ; exon_number 1 ; gene_id "HYDIN--ZNF148^HYDIN^ENSG00000157423.18" ; gene_name HYDIN ; gene_type protein_coding ; havana_gene "OTTHUMG00000137584.14" ; havana_transcript "OTTHUMT00000398682.2" ; hgnc_id "HGNC:19368" ; level 2 ; orig_coord_info "chr16,71230660,71230687,-" ; protein_id "ENSP00000288168.10" ; tag basic ; transcript_id "HYDIN--ZNF148^ENST00000288168.14" ; transcript_name "HYDIN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HYDIN--ZNF148 HAVANA gene 114961 137123 . + . FI_gene_label "ZNF148^ENSG00000163848.20" ; ID "HYDIN--ZNF148^ZNF148^ENSG00000163848.20" ; ccdsid "CCDS3031.1" ; exon_id "ENSE00001270515.2" ; exon_number 4 ; gene_id "HYDIN--ZNF148^ZNF148^ENSG00000163848.20" ; gene_name ZNF148 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159448.5" ; havana_transcript "OTTHUMT00000355452.4" ; hgnc_id "HGNC:12933" ; level 2 ; orig_coord_info "chr3,125313308,125313640,-" ; protein_id "ENSP00000353863.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HYDIN--ZNF148^ENST00000360647.9" ; transcript_name "ZNF148-201" ; transcript_support_level 1 ; transcript_type protein_coding
HYDIN--ZNF148 HAVANA mRNA 114961 137123 . + . FI_gene_label "ZNF148^ENSG00000163848.20" ; ID "HYDIN--ZNF148^ENST00000360647.9" ; Parent "HYDIN--ZNF148^ZNF148^ENSG00000163848.20" ; ccdsid "CCDS3031.1" ; exon_id "ENSE00001270515.2" ; exon_number 4 ; gene_id "HYDIN--ZNF148^ZNF148^ENSG00000163848.20" ; gene_name ZNF148 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159448.5" ; havana_transcript "OTTHUMT00000355452.4" ; hgnc_id "HGNC:12933" ; level 2 ; orig_coord_info "chr3,125313308,125313640,-" ; protein_id "ENSP00000353863.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HYDIN--ZNF148^ENST00000360647.9" ; transcript_name "ZNF148-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HYDIN2--GPR89A HAVANA gene 101468 118452 . + . FI_gene_label "GPR89A^ENSG00000117262.19" ; ID "HYDIN2--GPR89A^GPR89A^ENSG00000117262.19" ; ccdsid "CCDS72857.1" ; exon_id "ENSE00003846947.1" ; exon_number 1 ; gene_id "HYDIN2--GPR89A^GPR89A^ENSG00000117262.19" ; gene_name GPR89A ; gene_type protein_coding ; havana_gene "OTTHUMG00000013738.6" ; havana_transcript "OTTHUMT00000038507.3" ; hgnc_id "HGNC:31984" ; level 2 ; orig_coord_info "chr1,145608134,145608175,+" ; protein_id "ENSP00000319673.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HYDIN2--GPR89A^ENST00000313835.14" ; transcript_name "GPR89A-201" ; transcript_support_level 1 ; transcript_type protein_coding
HYDIN2--GPR89A HAVANA mRNA 101468 118452 . + . FI_gene_label "GPR89A^ENSG00000117262.19" ; ID "HYDIN2--GPR89A^ENST00000313835.14" ; Parent "HYDIN2--GPR89A^GPR89A^ENSG00000117262.19" ; ccdsid "CCDS72857.1" ; exon_id "ENSE00003846947.1" ; exon_number 1 ; gene_id "HYDIN2--GPR89A^GPR89A^ENSG00000117262.19" ; gene_name GPR89A ; gene_type protein_coding ; havana_gene "OTTHUMG00000013738.6" ; havana_transcript "OTTHUMT00000038507.3" ; hgnc_id "HGNC:31984" ; level 2 ; orig_coord_info "chr1,145608134,145608175,+" ; protein_id "ENSP00000319673.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HYDIN2--GPR89A^ENST00000313835.14" ; transcript_name "GPR89A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IKZF2--AC093865.1 HAVANA gene 3090 19227 . + . FI_gene_label "IKZF2^ENSG00000030419.16" ; ID "IKZF2--AC093865.1^IKZF2^ENSG00000030419.16" ; exon_id "ENSE00003626229.1" ; exon_number 1 ; gene_id "IKZF2--AC093865.1^IKZF2^ENSG00000030419.16" ; gene_name IKZF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133005.7" ; havana_transcript "OTTHUMT00000256594.1" ; hgnc_id "HGNC:13177" ; level 2 ; orig_coord_info "chr2,213150181,213150183,-" ; protein_id "ENSP00000342876.2" ; tag basic appris_alternative_1 ; transcript_id "IKZF2--AC093865.1^ENST00000342002.6" ; transcript_name "IKZF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
IKZF2--AC093865.1 HAVANA mRNA 3090 19227 . + . FI_gene_label "IKZF2^ENSG00000030419.16" ; ID "IKZF2--AC093865.1^ENST00000342002.6" ; Parent "IKZF2--AC093865.1^IKZF2^ENSG00000030419.16" ; exon_id "ENSE00003626229.1" ; exon_number 1 ; gene_id "IKZF2--AC093865.1^IKZF2^ENSG00000030419.16" ; gene_name IKZF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133005.7" ; havana_transcript "OTTHUMT00000256594.1" ; hgnc_id "HGNC:13177" ; level 2 ; orig_coord_info "chr2,213150181,213150183,-" ; protein_id "ENSP00000342876.2" ; tag basic appris_alternative_1 ; transcript_id "IKZF2--AC093865.1^ENST00000342002.6" ; transcript_name "IKZF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IKZF2--ERBB4 HAVANA gene 28212 51444 . + . FI_gene_label "ERBB4^ENSG00000178568.15" ; ID "IKZF2--ERBB4^ERBB4^ENSG00000178568.15" ; exon_id "ENSE00001775290.1" ; exon_number 1 ; gene_id "IKZF2--ERBB4^ERBB4^ENSG00000178568.15" ; gene_name ERBB4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133012.6" ; havana_transcript "OTTHUMT00000336978.3" ; hgnc_id "HGNC:3432" ; level 2 ; orig_coord_info "chr2,212538449,212538529,-" ; protein_id "ENSP00000260943.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "IKZF2--ERBB4^ENST00000260943.10" ; transcript_name "ERBB4-201" ; transcript_support_level 5 ; transcript_type protein_coding
IKZF2--ERBB4 HAVANA mRNA 28212 51444 . + . FI_gene_label "ERBB4^ENSG00000178568.15" ; ID "IKZF2--ERBB4^ENST00000260943.10" ; Parent "IKZF2--ERBB4^ERBB4^ENSG00000178568.15" ; exon_id "ENSE00001775290.1" ; exon_number 1 ; gene_id "IKZF2--ERBB4^ERBB4^ENSG00000178568.15" ; gene_name ERBB4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133012.6" ; havana_transcript "OTTHUMT00000336978.3" ; hgnc_id "HGNC:3432" ; level 2 ; orig_coord_info "chr2,212538449,212538529,-" ; protein_id "ENSP00000260943.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "IKZF2--ERBB4^ENST00000260943.10" ; transcript_name "ERBB4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
IKZF2--ERBB4 HAVANA gene 3090 19227 . + . FI_gene_label "IKZF2^ENSG00000030419.16" ; ID "IKZF2--ERBB4^IKZF2^ENSG00000030419.16" ; exon_id "ENSE00003626229.1" ; exon_number 1 ; gene_id "IKZF2--ERBB4^IKZF2^ENSG00000030419.16" ; gene_name IKZF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133005.7" ; havana_transcript "OTTHUMT00000256594.1" ; hgnc_id "HGNC:13177" ; level 2 ; orig_coord_info "chr2,213150181,213150183,-" ; protein_id "ENSP00000342876.2" ; tag basic appris_alternative_1 ; transcript_id "IKZF2--ERBB4^ENST00000342002.6" ; transcript_name "IKZF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
IKZF2--ERBB4 HAVANA mRNA 3090 19227 . + . FI_gene_label "IKZF2^ENSG00000030419.16" ; ID "IKZF2--ERBB4^ENST00000342002.6" ; Parent "IKZF2--ERBB4^IKZF2^ENSG00000030419.16" ; exon_id "ENSE00003626229.1" ; exon_number 1 ; gene_id "IKZF2--ERBB4^IKZF2^ENSG00000030419.16" ; gene_name IKZF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133005.7" ; havana_transcript "OTTHUMT00000256594.1" ; hgnc_id "HGNC:13177" ; level 2 ; orig_coord_info "chr2,213150181,213150183,-" ; protein_id "ENSP00000342876.2" ; tag basic appris_alternative_1 ; transcript_id "IKZF2--ERBB4^ENST00000342002.6" ; transcript_name "IKZF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IQSEC1--AC006504.2 HAVANA gene 11915 32850 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "IQSEC1--AC006504.2^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "IQSEC1--AC006504.2^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "IQSEC1--AC006504.2^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
IQSEC1--AC006504.2 HAVANA mRNA 11915 32850 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "IQSEC1--AC006504.2^ENST00000273221.8" ; Parent "IQSEC1--AC006504.2^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "IQSEC1--AC006504.2^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "IQSEC1--AC006504.2^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IQSEC1--AC006504.5 HAVANA gene 11915 32850 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "IQSEC1--AC006504.5^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "IQSEC1--AC006504.5^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "IQSEC1--AC006504.5^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
IQSEC1--AC006504.5 HAVANA mRNA 11915 32850 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "IQSEC1--AC006504.5^ENST00000273221.8" ; Parent "IQSEC1--AC006504.5^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "IQSEC1--AC006504.5^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "IQSEC1--AC006504.5^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ITGB5--SEC22B2P HAVANA gene 3804 27601 . + . FI_gene_label "ITGB5^ENSG00000082781.12" ; ID "ITGB5--SEC22B2P^ITGB5^ENSG00000082781.12" ; ccdsid "CCDS3030.1" ; exon_id "ENSE00001299954.5" ; exon_number 1 ; gene_id "ITGB5--SEC22B2P^ITGB5^ENSG00000082781.12" ; gene_name ITGB5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159432.10" ; havana_transcript "OTTHUMT00000355286.4" ; hgnc_id "HGNC:6160" ; level 2 ; orig_coord_info "chr3,124886931,124887000,-" ; protein_id "ENSP00000296181.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ITGB5--SEC22B2P^ENST00000296181.9" ; transcript_name "ITGB5-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITGB5--SEC22B2P HAVANA mRNA 3804 27601 . + . FI_gene_label "ITGB5^ENSG00000082781.12" ; ID "ITGB5--SEC22B2P^ENST00000296181.9" ; Parent "ITGB5--SEC22B2P^ITGB5^ENSG00000082781.12" ; ccdsid "CCDS3030.1" ; exon_id "ENSE00001299954.5" ; exon_number 1 ; gene_id "ITGB5--SEC22B2P^ITGB5^ENSG00000082781.12" ; gene_name ITGB5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159432.10" ; havana_transcript "OTTHUMT00000355286.4" ; hgnc_id "HGNC:6160" ; level 2 ; orig_coord_info "chr3,124886931,124887000,-" ; protein_id "ENSP00000296181.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ITGB5--SEC22B2P^ENST00000296181.9" ; transcript_name "ITGB5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIF1C--AC004771.2 HAVANA gene 1001 22569 . + . FI_gene_label "KIF1C^ENSG00000129250.12" ; ID "KIF1C--AC004771.2^KIF1C^ENSG00000129250.12" ; ccdsid "CCDS11065.1" ; exon_id "ENSE00001415034.1" ; exon_number 3 ; gene_id "KIF1C--AC004771.2^KIF1C^ENSG00000129250.12" ; gene_name KIF1C ; gene_type protein_coding ; havana_gene "OTTHUMG00000099451.4" ; havana_transcript "OTTHUMT00000216916.2" ; hgnc_id "HGNC:6317" ; level 2 ; orig_coord_info "chr17,5000247,5000352,+" ; protein_id "ENSP00000320821.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIF1C--AC004771.2^ENST00000320785.10" ; transcript_name "KIF1C-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIF1C--AC004771.2 HAVANA mRNA 1001 22569 . + . FI_gene_label "KIF1C^ENSG00000129250.12" ; ID "KIF1C--AC004771.2^ENST00000320785.10" ; Parent "KIF1C--AC004771.2^KIF1C^ENSG00000129250.12" ; ccdsid "CCDS11065.1" ; exon_id "ENSE00001415034.1" ; exon_number 3 ; gene_id "KIF1C--AC004771.2^KIF1C^ENSG00000129250.12" ; gene_name KIF1C ; gene_type protein_coding ; havana_gene "OTTHUMG00000099451.4" ; havana_transcript "OTTHUMT00000216916.2" ; hgnc_id "HGNC:6317" ; level 2 ; orig_coord_info "chr17,5000247,5000352,+" ; protein_id "ENSP00000320821.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIF1C--AC004771.2^ENST00000320785.10" ; transcript_name "KIF1C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIF1C--AC004771.4 HAVANA gene 1001 22569 . + . FI_gene_label "KIF1C^ENSG00000129250.12" ; ID "KIF1C--AC004771.4^KIF1C^ENSG00000129250.12" ; ccdsid "CCDS11065.1" ; exon_id "ENSE00001415034.1" ; exon_number 3 ; gene_id "KIF1C--AC004771.4^KIF1C^ENSG00000129250.12" ; gene_name KIF1C ; gene_type protein_coding ; havana_gene "OTTHUMG00000099451.4" ; havana_transcript "OTTHUMT00000216916.2" ; hgnc_id "HGNC:6317" ; level 2 ; orig_coord_info "chr17,5000247,5000352,+" ; protein_id "ENSP00000320821.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIF1C--AC004771.4^ENST00000320785.10" ; transcript_name "KIF1C-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIF1C--AC004771.4 HAVANA mRNA 1001 22569 . + . FI_gene_label "KIF1C^ENSG00000129250.12" ; ID "KIF1C--AC004771.4^ENST00000320785.10" ; Parent "KIF1C--AC004771.4^KIF1C^ENSG00000129250.12" ; ccdsid "CCDS11065.1" ; exon_id "ENSE00001415034.1" ; exon_number 3 ; gene_id "KIF1C--AC004771.4^KIF1C^ENSG00000129250.12" ; gene_name KIF1C ; gene_type protein_coding ; havana_gene "OTTHUMG00000099451.4" ; havana_transcript "OTTHUMT00000216916.2" ; hgnc_id "HGNC:6317" ; level 2 ; orig_coord_info "chr17,5000247,5000352,+" ; protein_id "ENSP00000320821.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIF1C--AC004771.4^ENST00000320785.10" ; transcript_name "KIF1C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KYAT3--GBP2 HAVANA gene 1325 13913 . + . FI_gene_label "KYAT3^ENSG00000137944.18" ; ID "KYAT3--GBP2^KYAT3^ENSG00000137944.18" ; ccdsid "CCDS30766.1" ; exon_id "ENSE00003688776.1" ; exon_number 2 ; gene_id "KYAT3--GBP2^KYAT3^ENSG00000137944.18" ; gene_name KYAT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010617.9" ; havana_transcript "OTTHUMT00000029300.4" ; hgnc_id "HGNC:33238" ; level 2 ; orig_coord_info "chr1,88988252,88988350,-" ; protein_id "ENSP00000260508.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KYAT3--GBP2^ENST00000260508.9" ; transcript_name "KYAT3-201" ; transcript_support_level 1 ; transcript_type protein_coding
KYAT3--GBP2 HAVANA mRNA 1325 13913 . + . FI_gene_label "KYAT3^ENSG00000137944.18" ; ID "KYAT3--GBP2^ENST00000260508.9" ; Parent "KYAT3--GBP2^KYAT3^ENSG00000137944.18" ; ccdsid "CCDS30766.1" ; exon_id "ENSE00003688776.1" ; exon_number 2 ; gene_id "KYAT3--GBP2^KYAT3^ENSG00000137944.18" ; gene_name KYAT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010617.9" ; havana_transcript "OTTHUMT00000029300.4" ; hgnc_id "HGNC:33238" ; level 2 ; orig_coord_info "chr1,88988252,88988350,-" ; protein_id "ENSP00000260508.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KYAT3--GBP2^ENST00000260508.9" ; transcript_name "KYAT3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KYAT3--GBP2 HAVANA gene 20298 34116 . + . FI_gene_label "GBP2^ENSG00000162645.13" ; ID "KYAT3--GBP2^GBP2^ENSG00000162645.13" ; ccdsid "CCDS719.1" ; exon_id "ENSE00002151490.1" ; exon_number 2 ; gene_id "KYAT3--GBP2^GBP2^ENSG00000162645.13" ; gene_name GBP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010662.5" ; havana_transcript "OTTHUMT00000029406.3" ; hgnc_id "HGNC:4183" ; level 2 ; orig_coord_info "chr1,89121777,89121966,-" ; protein_id "ENSP00000359497.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "KYAT3--GBP2^ENST00000370466.4" ; transcript_name "GBP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
KYAT3--GBP2 HAVANA mRNA 20298 34116 . + . FI_gene_label "GBP2^ENSG00000162645.13" ; ID "KYAT3--GBP2^ENST00000370466.4" ; Parent "KYAT3--GBP2^GBP2^ENSG00000162645.13" ; ccdsid "CCDS719.1" ; exon_id "ENSE00002151490.1" ; exon_number 2 ; gene_id "KYAT3--GBP2^GBP2^ENSG00000162645.13" ; gene_name GBP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010662.5" ; havana_transcript "OTTHUMT00000029406.3" ; hgnc_id "HGNC:4183" ; level 2 ; orig_coord_info "chr1,89121777,89121966,-" ; protein_id "ENSP00000359497.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "KYAT3--GBP2^ENST00000370466.4" ; transcript_name "GBP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC00381--NKAIN2 HAVANA gene 10218 17864 . + . FI_gene_label "NKAIN2^ENSG00000188580.15" ; ID "LINC00381--NKAIN2^NKAIN2^ENSG00000188580.15" ; exon_id "ENSE00003552753.1" ; exon_number 1 ; gene_id "LINC00381--NKAIN2^NKAIN2^ENSG00000188580.15" ; gene_name NKAIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015500.3" ; havana_transcript "OTTHUMT00000042056.1" ; hgnc_id "HGNC:16443" ; level 2 ; orig_coord_info "chr6,123804201,123804254,+" ; protein_id "ENSP00000357401.1" ; tag basic ; transcript_id "LINC00381--NKAIN2^ENST00000368416.5" ; transcript_name "NKAIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LINC00381--NKAIN2 HAVANA mRNA 10218 17864 . + . FI_gene_label "NKAIN2^ENSG00000188580.15" ; ID "LINC00381--NKAIN2^ENST00000368416.5" ; Parent "LINC00381--NKAIN2^NKAIN2^ENSG00000188580.15" ; exon_id "ENSE00003552753.1" ; exon_number 1 ; gene_id "LINC00381--NKAIN2^NKAIN2^ENSG00000188580.15" ; gene_name NKAIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015500.3" ; havana_transcript "OTTHUMT00000042056.1" ; hgnc_id "HGNC:16443" ; level 2 ; orig_coord_info "chr6,123804201,123804254,+" ; protein_id "ENSP00000357401.1" ; tag basic ; transcript_id "LINC00381--NKAIN2^ENST00000368416.5" ; transcript_name "NKAIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC00623--RIIAD1 HAVANA gene 11041 20432 . + . FI_gene_label "RIIAD1^ENSG00000178796.13" ; ID "LINC00623--RIIAD1^RIIAD1^ENSG00000178796.13" ; exon_id "ENSE00003672016.1" ; exon_number 4 ; gene_id "LINC00623--RIIAD1^RIIAD1^ENSG00000178796.13" ; gene_name RIIAD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013055.5" ; havana_transcript "OTTHUMT00000036630.2" ; hgnc_id "HGNC:26686" ; level 2 ; orig_coord_info "chr1,151714509,151714529,+" ; protein_id "ENSP00000420280.1" ; tag NMD_exception basic appris_alternative_2 ; transcript_id "LINC00623--RIIAD1^ENST00000326413.7" ; transcript_name "RIIAD1-201" ; transcript_support_level 2 ; transcript_type protein_coding
LINC00623--RIIAD1 HAVANA mRNA 11041 20432 . + . FI_gene_label "RIIAD1^ENSG00000178796.13" ; ID "LINC00623--RIIAD1^ENST00000326413.7" ; Parent "LINC00623--RIIAD1^RIIAD1^ENSG00000178796.13" ; exon_id "ENSE00003672016.1" ; exon_number 4 ; gene_id "LINC00623--RIIAD1^RIIAD1^ENSG00000178796.13" ; gene_name RIIAD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013055.5" ; havana_transcript "OTTHUMT00000036630.2" ; hgnc_id "HGNC:26686" ; level 2 ; orig_coord_info "chr1,151714509,151714529,+" ; protein_id "ENSP00000420280.1" ; tag NMD_exception basic appris_alternative_2 ; transcript_id "LINC00623--RIIAD1^ENST00000326413.7" ; transcript_name "RIIAD1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
LINC01674--POTED HAVANA gene 11421 24635 . + . FI_gene_label "POTED^ENSG00000166351.10" ; ID "LINC01674--POTED^POTED^ENSG00000166351.10" ; ccdsid "CCDS13562.1" ; exon_id "ENSE00001690230.2" ; exon_number 1 ; gene_id "LINC01674--POTED^POTED^ENSG00000166351.10" ; gene_name POTED ; gene_type protein_coding ; havana_gene "OTTHUMG00000074197.1" ; havana_transcript "OTTHUMT00000157660.1" ; hgnc_id "HGNC:23822" ; level 2 ; orig_coord_info "chr21,13610229,13610749,+" ; protein_id "ENSP00000299443.5" ; tag basic appris_principal_1 CCDS ; transcript_id "LINC01674--POTED^ENST00000299443.5" ; transcript_name "POTED-201" ; transcript_support_level 1 ; transcript_type protein_coding
LINC01674--POTED HAVANA mRNA 11421 24635 . + . FI_gene_label "POTED^ENSG00000166351.10" ; ID "LINC01674--POTED^ENST00000299443.5" ; Parent "LINC01674--POTED^POTED^ENSG00000166351.10" ; ccdsid "CCDS13562.1" ; exon_id "ENSE00001690230.2" ; exon_number 1 ; gene_id "LINC01674--POTED^POTED^ENSG00000166351.10" ; gene_name POTED ; gene_type protein_coding ; havana_gene "OTTHUMG00000074197.1" ; havana_transcript "OTTHUMT00000157660.1" ; hgnc_id "HGNC:23822" ; level 2 ; orig_coord_info "chr21,13610229,13610749,+" ; protein_id "ENSP00000299443.5" ; tag basic appris_principal_1 CCDS ; transcript_id "LINC01674--POTED^ENST00000299443.5" ; transcript_name "POTED-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC02835--RYR3 HAVANA gene 6873 124263 . + . FI_gene_label "RYR3^ENSG00000198838.14" ; ID "LINC02835--RYR3^RYR3^ENSG00000198838.14" ; exon_id "ENSE00001540954.1" ; exon_number 1 ; gene_id "LINC02835--RYR3^RYR3^ENSG00000198838.14" ; gene_name RYR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172253.8" ; havana_transcript "OTTHUMT00000488324.1" ; hgnc_id "HGNC:10485" ; level 2 ; orig_coord_info "chr15,33311046,33311096,+" ; protein_id "ENSP00000373884.5" ; tag NAGNAG_splice_site not_organism_supported basic appris_alternative_2 ; transcript_id "LINC02835--RYR3^ENST00000389232.9" ; transcript_name "RYR3-201" ; transcript_support_level 5 ; transcript_type protein_coding
LINC02835--RYR3 HAVANA mRNA 6873 124263 . + . FI_gene_label "RYR3^ENSG00000198838.14" ; ID "LINC02835--RYR3^ENST00000389232.9" ; Parent "LINC02835--RYR3^RYR3^ENSG00000198838.14" ; exon_id "ENSE00001540954.1" ; exon_number 1 ; gene_id "LINC02835--RYR3^RYR3^ENSG00000198838.14" ; gene_name RYR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172253.8" ; havana_transcript "OTTHUMT00000488324.1" ; hgnc_id "HGNC:10485" ; level 2 ; orig_coord_info "chr15,33311046,33311096,+" ; protein_id "ENSP00000373884.5" ; tag NAGNAG_splice_site not_organism_supported basic appris_alternative_2 ; transcript_id "LINC02835--RYR3^ENST00000389232.9" ; transcript_name "RYR3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MBD2--TMCO4 HAVANA gene 1001 14852 . + . FI_gene_label "MBD2^ENSG00000134046.12" ; ID "MBD2--TMCO4^MBD2^ENSG00000134046.12" ; ccdsid "CCDS11953.1" ; exon_id "ENSE00001265644.2" ; exon_number 1 ; gene_id "MBD2--TMCO4^MBD2^ENSG00000134046.12" ; gene_name MBD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132705.5" ; havana_transcript "OTTHUMT00000256003.4" ; hgnc_id "HGNC:6917" ; level 2 ; orig_coord_info "chr18,54224018,54224559,-" ; protein_id "ENSP00000256429.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MBD2--TMCO4^ENST00000256429.8" ; transcript_name "MBD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MBD2--TMCO4 HAVANA mRNA 1001 14852 . + . FI_gene_label "MBD2^ENSG00000134046.12" ; ID "MBD2--TMCO4^ENST00000256429.8" ; Parent "MBD2--TMCO4^MBD2^ENSG00000134046.12" ; ccdsid "CCDS11953.1" ; exon_id "ENSE00001265644.2" ; exon_number 1 ; gene_id "MBD2--TMCO4^MBD2^ENSG00000134046.12" ; gene_name MBD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132705.5" ; havana_transcript "OTTHUMT00000256003.4" ; hgnc_id "HGNC:6917" ; level 2 ; orig_coord_info "chr18,54224018,54224559,-" ; protein_id "ENSP00000256429.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MBD2--TMCO4^ENST00000256429.8" ; transcript_name "MBD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MBD2--TMCO4 HAVANA gene 17882 38033 . + . FI_gene_label "TMCO4^ENSG00000162542.14" ; ID "MBD2--TMCO4^TMCO4^ENSG00000162542.14" ; ccdsid "CCDS198.1" ; exon_id "ENSE00003672467.1" ; exon_number 4 ; gene_id "MBD2--TMCO4^TMCO4^ENSG00000162542.14" ; gene_name TMCO4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002697.1" ; havana_transcript "OTTHUMT00000007658.1" ; hgnc_id "HGNC:27393" ; level 2 ; orig_coord_info "chr1,19780580,19780758,-" ; protein_id "ENSP00000294543.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MBD2--TMCO4^ENST00000294543.11" ; transcript_name "TMCO4-201" ; transcript_support_level 1 ; transcript_type protein_coding
MBD2--TMCO4 HAVANA mRNA 17882 38033 . + . FI_gene_label "TMCO4^ENSG00000162542.14" ; ID "MBD2--TMCO4^ENST00000294543.11" ; Parent "MBD2--TMCO4^TMCO4^ENSG00000162542.14" ; ccdsid "CCDS198.1" ; exon_id "ENSE00003672467.1" ; exon_number 4 ; gene_id "MBD2--TMCO4^TMCO4^ENSG00000162542.14" ; gene_name TMCO4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002697.1" ; havana_transcript "OTTHUMT00000007658.1" ; hgnc_id "HGNC:27393" ; level 2 ; orig_coord_info "chr1,19780580,19780758,-" ; protein_id "ENSP00000294543.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MBD2--TMCO4^ENST00000294543.11" ; transcript_name "TMCO4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MECP2--AC244097.1 HAVANA gene 3326 32461 . + . FI_gene_label "MECP2^ENSG00000169057.24" ; ID "MECP2--AC244097.1^MECP2^ENSG00000169057.24" ; ccdsid "CCDS14741.1" ; exon_id "ENSE00003539912.1" ; exon_number 2 ; gene_id "MECP2--AC244097.1^MECP2^ENSG00000169057.24" ; gene_name MECP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024229.17" ; havana_transcript "OTTHUMT00000061144.2" ; hgnc_id "HGNC:6990" ; level 2 ; orig_coord_info "chrX,154092184,154092209,-" ; protein_id "ENSP00000301948.6" ; tag basic MANE_Plus_Clinical appris_principal_4 CCDS ; transcript_id "MECP2--AC244097.1^ENST00000303391.11" ; transcript_name "MECP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MECP2--AC244097.1 HAVANA mRNA 3326 32461 . + . FI_gene_label "MECP2^ENSG00000169057.24" ; ID "MECP2--AC244097.1^ENST00000303391.11" ; Parent "MECP2--AC244097.1^MECP2^ENSG00000169057.24" ; ccdsid "CCDS14741.1" ; exon_id "ENSE00003539912.1" ; exon_number 2 ; gene_id "MECP2--AC244097.1^MECP2^ENSG00000169057.24" ; gene_name MECP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024229.17" ; havana_transcript "OTTHUMT00000061144.2" ; hgnc_id "HGNC:6990" ; level 2 ; orig_coord_info "chrX,154092184,154092209,-" ; protein_id "ENSP00000301948.6" ; tag basic MANE_Plus_Clinical appris_principal_4 CCDS ; transcript_id "MECP2--AC244097.1^ENST00000303391.11" ; transcript_name "MECP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MECP2--TEX28 HAVANA gene 3326 32461 . + . FI_gene_label "MECP2^ENSG00000169057.24" ; ID "MECP2--TEX28^MECP2^ENSG00000169057.24" ; ccdsid "CCDS14741.1" ; exon_id "ENSE00003539912.1" ; exon_number 2 ; gene_id "MECP2--TEX28^MECP2^ENSG00000169057.24" ; gene_name MECP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024229.17" ; havana_transcript "OTTHUMT00000061144.2" ; hgnc_id "HGNC:6990" ; level 2 ; orig_coord_info "chrX,154092184,154092209,-" ; protein_id "ENSP00000301948.6" ; tag basic MANE_Plus_Clinical appris_principal_4 CCDS ; transcript_id "MECP2--TEX28^ENST00000303391.11" ; transcript_name "MECP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MECP2--TEX28 HAVANA mRNA 3326 32461 . + . FI_gene_label "MECP2^ENSG00000169057.24" ; ID "MECP2--TEX28^ENST00000303391.11" ; Parent "MECP2--TEX28^MECP2^ENSG00000169057.24" ; ccdsid "CCDS14741.1" ; exon_id "ENSE00003539912.1" ; exon_number 2 ; gene_id "MECP2--TEX28^MECP2^ENSG00000169057.24" ; gene_name MECP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024229.17" ; havana_transcript "OTTHUMT00000061144.2" ; hgnc_id "HGNC:6990" ; level 2 ; orig_coord_info "chrX,154092184,154092209,-" ; protein_id "ENSP00000301948.6" ; tag basic MANE_Plus_Clinical appris_principal_4 CCDS ; transcript_id "MECP2--TEX28^ENST00000303391.11" ; transcript_name "MECP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MECP2--TEX28 ENSEMBL gene 37374 42315 . + . FI_gene_label "TEX28^ENSG00000278057.4" ; ID "MECP2--TEX28^TEX28^ENSG00000278057.4" ; ccdsid "CCDS14744.2" ; exon_id "ENSE00003752743.1" ; exon_number 1 ; gene_id "MECP2--TEX28^TEX28^ENSG00000278057.4" ; gene_name TEX28 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022654.8" ; hgnc_id "HGNC:2563" ; level 3 ; orig_coord_info "chrX,154292106,154292117,-" ; protein_id "ENSP00000479148.1" ; tag basic appris_principal_1 CCDS ; transcript_id "MECP2--TEX28^ENST00000610938.1" ; transcript_name "TEX28-201" ; transcript_support_level 2 ; transcript_type protein_coding
MECP2--TEX28 ENSEMBL mRNA 37374 42315 . + . FI_gene_label "TEX28^ENSG00000278057.4" ; ID "MECP2--TEX28^ENST00000610938.1" ; Parent "MECP2--TEX28^TEX28^ENSG00000278057.4" ; ccdsid "CCDS14744.2" ; exon_id "ENSE00003752743.1" ; exon_number 1 ; gene_id "MECP2--TEX28^TEX28^ENSG00000278057.4" ; gene_name TEX28 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022654.8" ; hgnc_id "HGNC:2563" ; level 3 ; orig_coord_info "chrX,154292106,154292117,-" ; protein_id "ENSP00000479148.1" ; tag basic appris_principal_1 CCDS ; transcript_id "MECP2--TEX28^ENST00000610938.1" ; transcript_name "TEX28-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MED12L--PRKCA HAVANA gene 2198 52128 . + . FI_gene_label "MED12L^ENSG00000144893.12" ; ID "MED12L--PRKCA^MED12L^ENSG00000144893.12" ; exon_id "ENSE00001922631.1" ; exon_number 1 ; gene_id "MED12L--PRKCA^MED12L^ENSG00000144893.12" ; gene_name MED12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000159844.4" ; havana_transcript "OTTHUMT00000357776.1" ; hgnc_id "HGNC:16050" ; level 2 ; orig_coord_info "chr3,151086927,151087025,+" ; protein_id "ENSP00000273432.4" ; tag basic ; transcript_id "MED12L--PRKCA^ENST00000273432.8" ; transcript_name "MED12L-201" ; transcript_support_level 2 ; transcript_type protein_coding
MED12L--PRKCA HAVANA mRNA 2198 52128 . + . FI_gene_label "MED12L^ENSG00000144893.12" ; ID "MED12L--PRKCA^ENST00000273432.8" ; Parent "MED12L--PRKCA^MED12L^ENSG00000144893.12" ; exon_id "ENSE00001922631.1" ; exon_number 1 ; gene_id "MED12L--PRKCA^MED12L^ENSG00000144893.12" ; gene_name MED12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000159844.4" ; havana_transcript "OTTHUMT00000357776.1" ; hgnc_id "HGNC:16050" ; level 2 ; orig_coord_info "chr3,151086927,151087025,+" ; protein_id "ENSP00000273432.4" ; tag basic ; transcript_id "MED12L--PRKCA^ENST00000273432.8" ; transcript_name "MED12L-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MED12L--PRKCA HAVANA gene 58706 78927 . + . FI_gene_label "PRKCA^ENSG00000154229.12" ; ID "MED12L--PRKCA^PRKCA^ENSG00000154229.12" ; exon_id "ENSE00002685090.1" ; exon_number 1 ; gene_id "MED12L--PRKCA^PRKCA^ENSG00000154229.12" ; gene_name PRKCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000179533.3" ; havana_transcript "OTTHUMT00000446977.1" ; hgnc_id "HGNC:9393" ; level 2 ; orig_coord_info "chr17,66302860,66303024,+" ; protein_id "ENSP00000284384.6" ; tag mRNA_start_NF cds_start_NF ; transcript_id "MED12L--PRKCA^ENST00000284384.6" ; transcript_name "PRKCA-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
MED12L--PRKCA HAVANA mRNA 58706 78927 . + . FI_gene_label "PRKCA^ENSG00000154229.12" ; ID "MED12L--PRKCA^ENST00000284384.6" ; Parent "MED12L--PRKCA^PRKCA^ENSG00000154229.12" ; exon_id "ENSE00002685090.1" ; exon_number 1 ; gene_id "MED12L--PRKCA^PRKCA^ENSG00000154229.12" ; gene_name PRKCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000179533.3" ; havana_transcript "OTTHUMT00000446977.1" ; hgnc_id "HGNC:9393" ; level 2 ; orig_coord_info "chr17,66302860,66303024,+" ; protein_id "ENSP00000284384.6" ; tag mRNA_start_NF cds_start_NF ; transcript_id "MED12L--PRKCA^ENST00000284384.6" ; transcript_name "PRKCA-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
MINDY1--THEM4 HAVANA gene 2143 10224 . + . FI_gene_label "MINDY1^ENSG00000143409.15" ; ID "MINDY1--THEM4^MINDY1^ENSG00000143409.15" ; ccdsid "CCDS30854.1" ; exon_id "ENSE00001448336.1" ; exon_number 2 ; gene_id "MINDY1--THEM4^MINDY1^ENSG00000143409.15" ; gene_name MINDY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035061.7" ; havana_transcript "OTTHUMT00000084883.3" ; hgnc_id "HGNC:25648" ; level 2 ; orig_coord_info "chr1,151002165,151002191,-" ; protein_id "ENSP00000310923.5" ; tag basic CCDS ; transcript_id "MINDY1--THEM4^ENST00000312210.9" ; transcript_name "MINDY1-201" ; transcript_support_level 2 ; transcript_type protein_coding
MINDY1--THEM4 HAVANA mRNA 2143 10224 . + . FI_gene_label "MINDY1^ENSG00000143409.15" ; ID "MINDY1--THEM4^ENST00000312210.9" ; Parent "MINDY1--THEM4^MINDY1^ENSG00000143409.15" ; ccdsid "CCDS30854.1" ; exon_id "ENSE00001448336.1" ; exon_number 2 ; gene_id "MINDY1--THEM4^MINDY1^ENSG00000143409.15" ; gene_name MINDY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035061.7" ; havana_transcript "OTTHUMT00000084883.3" ; hgnc_id "HGNC:25648" ; level 2 ; orig_coord_info "chr1,151002165,151002191,-" ; protein_id "ENSP00000310923.5" ; tag basic CCDS ; transcript_id "MINDY1--THEM4^ENST00000312210.9" ; transcript_name "MINDY1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MINDY1--THEM4 HAVANA gene 13814 25686 . + . FI_gene_label "THEM4^ENSG00000159445.13" ; ID "MINDY1--THEM4^THEM4^ENSG00000159445.13" ; ccdsid "CCDS1006.1" ; exon_id "ENSE00001870114.2" ; exon_number 1 ; gene_id "MINDY1--THEM4^THEM4^ENSG00000159445.13" ; gene_name THEM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013049.3" ; havana_transcript "OTTHUMT00000036615.2" ; hgnc_id "HGNC:17947" ; level 2 ; orig_coord_info "chr1,151909360,151909458,-" ; protein_id "ENSP00000357804.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MINDY1--THEM4^ENST00000368814.8" ; transcript_name "THEM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
MINDY1--THEM4 HAVANA mRNA 13814 25686 . + . FI_gene_label "THEM4^ENSG00000159445.13" ; ID "MINDY1--THEM4^ENST00000368814.8" ; Parent "MINDY1--THEM4^THEM4^ENSG00000159445.13" ; ccdsid "CCDS1006.1" ; exon_id "ENSE00001870114.2" ; exon_number 1 ; gene_id "MINDY1--THEM4^THEM4^ENSG00000159445.13" ; gene_name THEM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013049.3" ; havana_transcript "OTTHUMT00000036615.2" ; hgnc_id "HGNC:17947" ; level 2 ; orig_coord_info "chr1,151909360,151909458,-" ; protein_id "ENSP00000357804.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MINDY1--THEM4^ENST00000368814.8" ; transcript_name "THEM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MIR4713HG--GLDN HAVANA gene 6562 22094 . + . FI_gene_label "GLDN^ENSG00000186417.14" ; ID "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; ccdsid "CCDS10140.2" ; exon_id "ENSE00001632503.4" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; gene_name GLDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131746.7" ; havana_transcript "OTTHUMT00000254667.3" ; hgnc_id "HGNC:29514" ; level 2 ; orig_coord_info "chr15,51341685,51342047,+" ; protein_id "ENSP00000335196.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MIR4713HG--GLDN^ENST00000335449.11" ; transcript_name "GLDN-201" ; transcript_support_level 2 ; transcript_type protein_coding
MIR4713HG--GLDN HAVANA mRNA 6562 22094 . + . FI_gene_label "GLDN^ENSG00000186417.14" ; ID "MIR4713HG--GLDN^ENST00000335449.11" ; Parent "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; ccdsid "CCDS10140.2" ; exon_id "ENSE00001632503.4" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; gene_name GLDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131746.7" ; havana_transcript "OTTHUMT00000254667.3" ; hgnc_id "HGNC:29514" ; level 2 ; orig_coord_info "chr15,51341685,51342047,+" ; protein_id "ENSP00000335196.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MIR4713HG--GLDN^ENST00000335449.11" ; transcript_name "GLDN-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MORN1--PEX10 HAVANA gene 28208 35790 . + . FI_gene_label "PEX10^ENSG00000157911.11" ; ID "MORN1--PEX10^PEX10^ENSG00000157911.11" ; ccdsid "CCDS41.1" ; exon_id "ENSE00003901586.1" ; exon_number 1 ; gene_id "MORN1--PEX10^PEX10^ENSG00000157911.11" ; gene_name PEX10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000001637.9" ; havana_transcript "OTTHUMT00000004638.4" ; hgnc_id "HGNC:8851" ; level 2 ; orig_coord_info "chr1,2412391,2412502,-" ; protein_id "ENSP00000288774.3" ; tag basic CCDS ; transcript_id "MORN1--PEX10^ENST00000288774.8" ; transcript_name "PEX10-201" ; transcript_support_level 1 ; transcript_type protein_coding
MORN1--PEX10 HAVANA mRNA 28208 35790 . + . FI_gene_label "PEX10^ENSG00000157911.11" ; ID "MORN1--PEX10^ENST00000288774.8" ; Parent "MORN1--PEX10^PEX10^ENSG00000157911.11" ; ccdsid "CCDS41.1" ; exon_id "ENSE00003901586.1" ; exon_number 1 ; gene_id "MORN1--PEX10^PEX10^ENSG00000157911.11" ; gene_name PEX10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000001637.9" ; havana_transcript "OTTHUMT00000004638.4" ; hgnc_id "HGNC:8851" ; level 2 ; orig_coord_info "chr1,2412391,2412502,-" ; protein_id "ENSP00000288774.3" ; tag basic CCDS ; transcript_id "MORN1--PEX10^ENST00000288774.8" ; transcript_name "PEX10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MORN1--PEX10 HAVANA gene 1037 9027 . + . FI_gene_label "MORN1^ENSG00000116151.14" ; ID "MORN1--PEX10^MORN1^ENSG00000116151.14" ; exon_id "ENSE00002214664.1" ; exon_number 1 ; gene_id "MORN1--PEX10^MORN1^ENSG00000116151.14" ; gene_name MORN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000001402.7" ; havana_transcript "OTTHUMT00000471010.1" ; hgnc_id "HGNC:25852" ; level 2 ; orig_coord_info "chr1,2391458,2391533,-" ; protein_id "ENSP00000367786.2" ; transcript_id "MORN1--PEX10^ENST00000378525.2" ; transcript_name "MORN1-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
MORN1--PEX10 HAVANA mRNA 1037 9027 . + . FI_gene_label "MORN1^ENSG00000116151.14" ; ID "MORN1--PEX10^ENST00000378525.2" ; Parent "MORN1--PEX10^MORN1^ENSG00000116151.14" ; exon_id "ENSE00002214664.1" ; exon_number 1 ; gene_id "MORN1--PEX10^MORN1^ENSG00000116151.14" ; gene_name MORN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000001402.7" ; havana_transcript "OTTHUMT00000471010.1" ; hgnc_id "HGNC:25852" ; level 2 ; orig_coord_info "chr1,2391458,2391533,-" ; protein_id "ENSP00000367786.2" ; transcript_id "MORN1--PEX10^ENST00000378525.2" ; transcript_name "MORN1-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
MS4A4A--ANKS1A HAVANA gene 4888 17457 . + . FI_gene_label "MS4A4A^ENSG00000110079.19" ; ID "MS4A4A--ANKS1A^MS4A4A^ENSG00000110079.19" ; ccdsid "CCDS7982.1" ; exon_id "ENSE00003850038.1" ; exon_number 1 ; gene_id "MS4A4A--ANKS1A^MS4A4A^ENSG00000110079.19" ; gene_name MS4A4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000154949.5" ; havana_transcript "OTTHUMT00000337774.3" ; hgnc_id "HGNC:13371" ; level 2 ; orig_coord_info "chr11,60280676,60280716,+" ; protein_id "ENSP00000338648.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MS4A4A--ANKS1A^ENST00000337908.5" ; transcript_name "MS4A4A-201" ; transcript_support_level 1 ; transcript_type protein_coding
MS4A4A--ANKS1A HAVANA mRNA 4888 17457 . + . FI_gene_label "MS4A4A^ENSG00000110079.19" ; ID "MS4A4A--ANKS1A^ENST00000337908.5" ; Parent "MS4A4A--ANKS1A^MS4A4A^ENSG00000110079.19" ; ccdsid "CCDS7982.1" ; exon_id "ENSE00003850038.1" ; exon_number 1 ; gene_id "MS4A4A--ANKS1A^MS4A4A^ENSG00000110079.19" ; gene_name MS4A4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000154949.5" ; havana_transcript "OTTHUMT00000337774.3" ; hgnc_id "HGNC:13371" ; level 2 ; orig_coord_info "chr11,60280676,60280716,+" ; protein_id "ENSP00000338648.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MS4A4A--ANKS1A^ENST00000337908.5" ; transcript_name "MS4A4A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MS4A4A--ANKS1A HAVANA gene 21676 49404 . + . FI_gene_label "ANKS1A^ENSG00000064999.15" ; ID "MS4A4A--ANKS1A^ANKS1A^ENSG00000064999.15" ; ccdsid "CCDS4798.1" ; exon_id "ENSE00003847126.1" ; exon_number 1 ; gene_id "MS4A4A--ANKS1A^ANKS1A^ENSG00000064999.15" ; gene_name ANKS1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014559.4" ; havana_transcript "OTTHUMT00000040262.3" ; hgnc_id "HGNC:20961" ; level 2 ; orig_coord_info "chr6,34889403,34889599,+" ; protein_id "ENSP00000353518.3" ; tag basic MANE_Select CCDS ; transcript_id "MS4A4A--ANKS1A^ENST00000360359.5" ; transcript_name "ANKS1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
MS4A4A--ANKS1A HAVANA mRNA 21676 49404 . + . FI_gene_label "ANKS1A^ENSG00000064999.15" ; ID "MS4A4A--ANKS1A^ENST00000360359.5" ; Parent "MS4A4A--ANKS1A^ANKS1A^ENSG00000064999.15" ; ccdsid "CCDS4798.1" ; exon_id "ENSE00003847126.1" ; exon_number 1 ; gene_id "MS4A4A--ANKS1A^ANKS1A^ENSG00000064999.15" ; gene_name ANKS1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014559.4" ; havana_transcript "OTTHUMT00000040262.3" ; hgnc_id "HGNC:20961" ; level 2 ; orig_coord_info "chr6,34889403,34889599,+" ; protein_id "ENSP00000353518.3" ; tag basic MANE_Select CCDS ; transcript_id "MS4A4A--ANKS1A^ENST00000360359.5" ; transcript_name "ANKS1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NBPF20--FMO5 HAVANA gene 117604 128311 . + . FI_gene_label "FMO5^ENSG00000131781.13" ; ID "NBPF20--FMO5^FMO5^ENSG00000131781.13" ; ccdsid "CCDS926.1" ; exon_id "ENSE00003729001.1" ; exon_number 2 ; gene_id "NBPF20--FMO5^FMO5^ENSG00000131781.13" ; gene_name FMO5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014607.5" ; havana_transcript "OTTHUMT00000040373.4" ; hgnc_id "HGNC:3773" ; level 2 ; orig_coord_info "chr1,147224895,147225029,-" ; protein_id "ENSP00000254090.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NBPF20--FMO5^ENST00000254090.9" ; transcript_name "FMO5-201" ; transcript_support_level 1 ; transcript_type protein_coding
NBPF20--FMO5 HAVANA mRNA 117604 128311 . + . FI_gene_label "FMO5^ENSG00000131781.13" ; ID "NBPF20--FMO5^ENST00000254090.9" ; Parent "NBPF20--FMO5^FMO5^ENSG00000131781.13" ; ccdsid "CCDS926.1" ; exon_id "ENSE00003729001.1" ; exon_number 2 ; gene_id "NBPF20--FMO5^FMO5^ENSG00000131781.13" ; gene_name FMO5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014607.5" ; havana_transcript "OTTHUMT00000040373.4" ; hgnc_id "HGNC:3773" ; level 2 ; orig_coord_info "chr1,147224895,147225029,-" ; protein_id "ENSP00000254090.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NBPF20--FMO5^ENST00000254090.9" ; transcript_name "FMO5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NBPF20--FMO5 HAVANA gene 1212 112831 . + . FI_gene_label "NBPF20^ENSG00000162825.16" ; ID "NBPF20--FMO5^NBPF20^ENSG00000162825.16" ; exon_id "ENSE00003715879.1" ; exon_number 2 ; gene_id "NBPF20--FMO5^NBPF20^ENSG00000162825.16" ; gene_name NBPF20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000042439.6" ; havana_transcript "OTTHUMT00000100689.6" ; hgnc_id "HGNC:32000" ; level 2 ; orig_coord_info "chr1,145405098,145405272,-" ; protein_id "ENSP00000358380.6" ; tag inferred_exon_combination basic appris_principal_1 ; transcript_id "NBPF20--FMO5^ENST00000369373.9" ; transcript_name "NBPF20-201" ; transcript_support_level 5 ; transcript_type protein_coding
NBPF20--FMO5 HAVANA mRNA 1212 112831 . + . FI_gene_label "NBPF20^ENSG00000162825.16" ; ID "NBPF20--FMO5^ENST00000369373.9" ; Parent "NBPF20--FMO5^NBPF20^ENSG00000162825.16" ; exon_id "ENSE00003715879.1" ; exon_number 2 ; gene_id "NBPF20--FMO5^NBPF20^ENSG00000162825.16" ; gene_name NBPF20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000042439.6" ; havana_transcript "OTTHUMT00000100689.6" ; hgnc_id "HGNC:32000" ; level 2 ; orig_coord_info "chr1,145405098,145405272,-" ; protein_id "ENSP00000358380.6" ; tag inferred_exon_combination basic appris_principal_1 ; transcript_id "NBPF20--FMO5^ENST00000369373.9" ; transcript_name "NBPF20-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NDUFV3--PDE9A HAVANA gene 16343 41749 . + . FI_gene_label "PDE9A^ENSG00000160191.18" ; ID "NDUFV3--PDE9A^PDE9A^ENSG00000160191.18" ; ccdsid "CCDS13690.1" ; exon_id "ENSE00003681162.2" ; exon_number 1 ; gene_id "NDUFV3--PDE9A^PDE9A^ENSG00000160191.18" ; gene_name PDE9A ; gene_type protein_coding ; havana_gene "OTTHUMG00000086825.2" ; havana_transcript "OTTHUMT00000195466.2" ; hgnc_id "HGNC:8795" ; level 2 ; orig_coord_info "chr21,42653815,42653883,+" ; protein_id "ENSP00000291539.6" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "NDUFV3--PDE9A^ENST00000291539.11" ; transcript_name "PDE9A-201" ; transcript_support_level 1 ; transcript_type protein_coding
NDUFV3--PDE9A HAVANA mRNA 16343 41749 . + . FI_gene_label "PDE9A^ENSG00000160191.18" ; ID "NDUFV3--PDE9A^ENST00000291539.11" ; Parent "NDUFV3--PDE9A^PDE9A^ENSG00000160191.18" ; ccdsid "CCDS13690.1" ; exon_id "ENSE00003681162.2" ; exon_number 1 ; gene_id "NDUFV3--PDE9A^PDE9A^ENSG00000160191.18" ; gene_name PDE9A ; gene_type protein_coding ; havana_gene "OTTHUMG00000086825.2" ; havana_transcript "OTTHUMT00000195466.2" ; hgnc_id "HGNC:8795" ; level 2 ; orig_coord_info "chr21,42653815,42653883,+" ; protein_id "ENSP00000291539.6" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "NDUFV3--PDE9A^ENST00000291539.11" ; transcript_name "PDE9A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NDUFV3--PDE9A HAVANA gene 4572 13342 . + . FI_gene_label "NDUFV3^ENSG00000160194.18" ; ID "NDUFV3--PDE9A^NDUFV3^ENSG00000160194.18" ; ccdsid "CCDS33573.1" ; exon_id "ENSE00001436763.1" ; exon_number 1 ; gene_id "NDUFV3--PDE9A^NDUFV3^ENSG00000160194.18" ; gene_name NDUFV3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086823.4" ; havana_transcript "OTTHUMT00000195448.2" ; hgnc_id "HGNC:7719" ; level 2 ; orig_coord_info "chr21,42893334,42893381,+" ; protein_id "ENSP00000342895.3" ; tag basic appris_principal_1 CCDS ; transcript_id "NDUFV3--PDE9A^ENST00000340344.4" ; transcript_name "NDUFV3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NDUFV3--PDE9A HAVANA mRNA 4572 13342 . + . FI_gene_label "NDUFV3^ENSG00000160194.18" ; ID "NDUFV3--PDE9A^ENST00000340344.4" ; Parent "NDUFV3--PDE9A^NDUFV3^ENSG00000160194.18" ; ccdsid "CCDS33573.1" ; exon_id "ENSE00001436763.1" ; exon_number 1 ; gene_id "NDUFV3--PDE9A^NDUFV3^ENSG00000160194.18" ; gene_name NDUFV3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086823.4" ; havana_transcript "OTTHUMT00000195448.2" ; hgnc_id "HGNC:7719" ; level 2 ; orig_coord_info "chr21,42893334,42893381,+" ; protein_id "ENSP00000342895.3" ; tag basic appris_principal_1 CCDS ; transcript_id "NDUFV3--PDE9A^ENST00000340344.4" ; transcript_name "NDUFV3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2NLC--HRNR HAVANA gene 14594 26086 . + . FI_gene_label "HRNR^ENSG00000197915.7" ; ID "NOTCH2NLC--HRNR^HRNR^ENSG00000197915.7" ; ccdsid "CCDS30859.1" ; exon_id "ENSE00001447987.1" ; exon_number 2 ; gene_id "NOTCH2NLC--HRNR^HRNR^ENSG00000197915.7" ; gene_name HRNR ; gene_type protein_coding ; havana_gene "OTTHUMG00000012243.2" ; havana_transcript "OTTHUMT00000034016.2" ; hgnc_id "HGNC:20846" ; level 2 ; orig_coord_info "chr1,152223116,152223253,-" ; protein_id "ENSP00000357791.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2NLC--HRNR^ENST00000368801.4" ; transcript_name "HRNR-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2NLC--HRNR HAVANA mRNA 14594 26086 . + . FI_gene_label "HRNR^ENSG00000197915.7" ; ID "NOTCH2NLC--HRNR^ENST00000368801.4" ; Parent "NOTCH2NLC--HRNR^HRNR^ENSG00000197915.7" ; ccdsid "CCDS30859.1" ; exon_id "ENSE00001447987.1" ; exon_number 2 ; gene_id "NOTCH2NLC--HRNR^HRNR^ENSG00000197915.7" ; gene_name HRNR ; gene_type protein_coding ; havana_gene "OTTHUMG00000012243.2" ; havana_transcript "OTTHUMT00000034016.2" ; hgnc_id "HGNC:20846" ; level 2 ; orig_coord_info "chr1,152223116,152223253,-" ; protein_id "ENSP00000357791.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2NLC--HRNR^ENST00000368801.4" ; transcript_name "HRNR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2NLC--HRNR ENSEMBL gene 2310 11593 . + . FI_gene_label "NOTCH2NLC^ENSG00000286219.1" ; ID "NOTCH2NLC--HRNR^NOTCH2NLC^ENSG00000286219.1" ; ccdsid "CCDS86015.1" ; exon_id "ENSE00003690199.1" ; exon_number 3 ; gene_id "NOTCH2NLC--HRNR^NOTCH2NLC^ENSG00000286219.1" ; gene_name NOTCH2NLC ; gene_type protein_coding ; havana_gene "OTTHUMG00000193481.1" ; hgnc_id "HGNC:53924" ; level 3 ; orig_coord_info "chr1,149430978,149431015,+" ; protein_id "ENSP00000462298.1" ; tag basic appris_principal_4 CCDS ; transcript_id "NOTCH2NLC--HRNR^ENST00000578189.1" ; transcript_name "NOTCH2NLC-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2NLC--HRNR ENSEMBL mRNA 2310 11593 . + . FI_gene_label "NOTCH2NLC^ENSG00000286219.1" ; ID "NOTCH2NLC--HRNR^ENST00000578189.1" ; Parent "NOTCH2NLC--HRNR^NOTCH2NLC^ENSG00000286219.1" ; ccdsid "CCDS86015.1" ; exon_id "ENSE00003690199.1" ; exon_number 3 ; gene_id "NOTCH2NLC--HRNR^NOTCH2NLC^ENSG00000286219.1" ; gene_name NOTCH2NLC ; gene_type protein_coding ; havana_gene "OTTHUMG00000193481.1" ; hgnc_id "HGNC:53924" ; level 3 ; orig_coord_info "chr1,149430978,149431015,+" ; protein_id "ENSP00000462298.1" ; tag basic appris_principal_4 CCDS ; transcript_id "NOTCH2NLC--HRNR^ENST00000578189.1" ; transcript_name "NOTCH2NLC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NR2C2AP--BORCS8 HAVANA gene 1001 3006 . + . FI_gene_label "NR2C2AP^ENSG00000184162.15" ; ID "NR2C2AP--BORCS8^NR2C2AP^ENSG00000184162.15" ; ccdsid "CCDS32967.1" ; exon_id "ENSE00001306819.8" ; exon_number 1 ; gene_id "NR2C2AP--BORCS8^NR2C2AP^ENSG00000184162.15" ; gene_name NR2C2AP ; gene_type protein_coding ; havana_gene "OTTHUMG00000169225.6" ; havana_transcript "OTTHUMT00000402936.4" ; hgnc_id "HGNC:30763" ; level 2 ; orig_coord_info "chr19,19203023,19203060,-" ; protein_id "ENSP00000332823.6" ; tag non_canonical_U12 retained_intron_final basic MANE_Select appris_principal_2 CCDS ; transcript_id "NR2C2AP--BORCS8^ENST00000331552.12" ; transcript_name "NR2C2AP-201" ; transcript_support_level 1 ; transcript_type protein_coding
NR2C2AP--BORCS8 HAVANA mRNA 1001 3006 . + . FI_gene_label "NR2C2AP^ENSG00000184162.15" ; ID "NR2C2AP--BORCS8^ENST00000331552.12" ; Parent "NR2C2AP--BORCS8^NR2C2AP^ENSG00000184162.15" ; ccdsid "CCDS32967.1" ; exon_id "ENSE00001306819.8" ; exon_number 1 ; gene_id "NR2C2AP--BORCS8^NR2C2AP^ENSG00000184162.15" ; gene_name NR2C2AP ; gene_type protein_coding ; havana_gene "OTTHUMG00000169225.6" ; havana_transcript "OTTHUMT00000402936.4" ; hgnc_id "HGNC:30763" ; level 2 ; orig_coord_info "chr19,19203023,19203060,-" ; protein_id "ENSP00000332823.6" ; tag non_canonical_U12 retained_intron_final basic MANE_Select appris_principal_2 CCDS ; transcript_id "NR2C2AP--BORCS8^ENST00000331552.12" ; transcript_name "NR2C2AP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NR2C2AP--BORCS8 HAVANA gene 6446 15169 . + . FI_gene_label "BORCS8^ENSG00000254901.8" ; ID "NR2C2AP--BORCS8^BORCS8^ENSG00000254901.8" ; ccdsid "CCDS46025.1" ; exon_id "ENSE00003843470.1" ; exon_number 1 ; gene_id "NR2C2AP--BORCS8^BORCS8^ENSG00000254901.8" ; gene_name BORCS8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166546.5" ; havana_transcript "OTTHUMT00000336091.5" ; hgnc_id "HGNC:37247" ; level 2 ; orig_coord_info "chr19,19192081,19192117,-" ; protein_id "ENSP00000425864.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NR2C2AP--BORCS8^ENST00000462790.8" ; transcript_name "BORCS8-202" ; transcript_support_level 1 ; transcript_type protein_coding
NR2C2AP--BORCS8 HAVANA mRNA 6446 15169 . + . FI_gene_label "BORCS8^ENSG00000254901.8" ; ID "NR2C2AP--BORCS8^ENST00000462790.8" ; Parent "NR2C2AP--BORCS8^BORCS8^ENSG00000254901.8" ; ccdsid "CCDS46025.1" ; exon_id "ENSE00003843470.1" ; exon_number 1 ; gene_id "NR2C2AP--BORCS8^BORCS8^ENSG00000254901.8" ; gene_name BORCS8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166546.5" ; havana_transcript "OTTHUMT00000336091.5" ; hgnc_id "HGNC:37247" ; level 2 ; orig_coord_info "chr19,19192081,19192117,-" ; protein_id "ENSP00000425864.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NR2C2AP--BORCS8^ENST00000462790.8" ; transcript_name "BORCS8-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NR2C2AP--MEF2B HAVANA gene 1001 3006 . + . FI_gene_label "NR2C2AP^ENSG00000184162.15" ; ID "NR2C2AP--MEF2B^NR2C2AP^ENSG00000184162.15" ; ccdsid "CCDS32967.1" ; exon_id "ENSE00001306819.8" ; exon_number 1 ; gene_id "NR2C2AP--MEF2B^NR2C2AP^ENSG00000184162.15" ; gene_name NR2C2AP ; gene_type protein_coding ; havana_gene "OTTHUMG00000169225.6" ; havana_transcript "OTTHUMT00000402936.4" ; hgnc_id "HGNC:30763" ; level 2 ; orig_coord_info "chr19,19203023,19203060,-" ; protein_id "ENSP00000332823.6" ; tag non_canonical_U12 retained_intron_final basic MANE_Select appris_principal_2 CCDS ; transcript_id "NR2C2AP--MEF2B^ENST00000331552.12" ; transcript_name "NR2C2AP-201" ; transcript_support_level 1 ; transcript_type protein_coding
NR2C2AP--MEF2B HAVANA mRNA 1001 3006 . + . FI_gene_label "NR2C2AP^ENSG00000184162.15" ; ID "NR2C2AP--MEF2B^ENST00000331552.12" ; Parent "NR2C2AP--MEF2B^NR2C2AP^ENSG00000184162.15" ; ccdsid "CCDS32967.1" ; exon_id "ENSE00001306819.8" ; exon_number 1 ; gene_id "NR2C2AP--MEF2B^NR2C2AP^ENSG00000184162.15" ; gene_name NR2C2AP ; gene_type protein_coding ; havana_gene "OTTHUMG00000169225.6" ; havana_transcript "OTTHUMT00000402936.4" ; hgnc_id "HGNC:30763" ; level 2 ; orig_coord_info "chr19,19203023,19203060,-" ; protein_id "ENSP00000332823.6" ; tag non_canonical_U12 retained_intron_final basic MANE_Select appris_principal_2 CCDS ; transcript_id "NR2C2AP--MEF2B^ENST00000331552.12" ; transcript_name "NR2C2AP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NR2C2AP--MEF2B HAVANA gene 9271 16008 . + . FI_gene_label "MEF2B^ENSG00000213999.17" ; ID "NR2C2AP--MEF2B^MEF2B^ENSG00000213999.17" ; exon_id "ENSE00003858426.1" ; exon_number 2 ; gene_id "NR2C2AP--MEF2B^MEF2B^ENSG00000213999.17" ; gene_name MEF2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000161595.6" ; havana_transcript "OTTHUMT00000336093.2" ; hgnc_id "HGNC:6995" ; level 2 ; orig_coord_info "chr19,19150682,19150735,-" ; protein_id "ENSP00000386480.1" ; tag retained_intron_final CAGE_supported_TSS basic appris_alternative_2 ; transcript_id "NR2C2AP--MEF2B^ENST00000409224.5" ; transcript_name "MEF2B-201" ; transcript_support_level 2 ; transcript_type protein_coding
NR2C2AP--MEF2B HAVANA mRNA 9271 16008 . + . FI_gene_label "MEF2B^ENSG00000213999.17" ; ID "NR2C2AP--MEF2B^ENST00000409224.5" ; Parent "NR2C2AP--MEF2B^MEF2B^ENSG00000213999.17" ; exon_id "ENSE00003858426.1" ; exon_number 2 ; gene_id "NR2C2AP--MEF2B^MEF2B^ENSG00000213999.17" ; gene_name MEF2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000161595.6" ; havana_transcript "OTTHUMT00000336093.2" ; hgnc_id "HGNC:6995" ; level 2 ; orig_coord_info "chr19,19150682,19150735,-" ; protein_id "ENSP00000386480.1" ; tag retained_intron_final CAGE_supported_TSS basic appris_alternative_2 ; transcript_id "NR2C2AP--MEF2B^ENST00000409224.5" ; transcript_name "MEF2B-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
OR8D1--OR8A1 HAVANA gene 16271 17648 . + . FI_gene_label "OR8A1^ENSG00000196119.8" ; ID "OR8D1--OR8A1^OR8A1^ENSG00000196119.8" ; exon_id "ENSE00001014261.5" ; exon_number 1 ; gene_id "OR8D1--OR8A1^OR8A1^ENSG00000196119.8" ; gene_name OR8A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165923.3" ; havana_transcript "OTTHUMT00000387062.3" ; hgnc_id "HGNC:8469" ; level 2 ; orig_coord_info "chr11,124570120,124571046,+" ; protein_id "ENSP00000284287.4" ; tag basic MANE_Select appris_principal_1 ; transcript_id "OR8D1--OR8A1^ENST00000284287.6" ; transcript_name "OR8A1-201" ; transcript_support_level NA ; transcript_type protein_coding
OR8D1--OR8A1 HAVANA mRNA 16271 17648 . + . FI_gene_label "OR8A1^ENSG00000196119.8" ; ID "OR8D1--OR8A1^ENST00000284287.6" ; Parent "OR8D1--OR8A1^OR8A1^ENSG00000196119.8" ; exon_id "ENSE00001014261.5" ; exon_number 1 ; gene_id "OR8D1--OR8A1^OR8A1^ENSG00000196119.8" ; gene_name OR8A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165923.3" ; havana_transcript "OTTHUMT00000387062.3" ; hgnc_id "HGNC:8469" ; level 2 ; orig_coord_info "chr11,124570120,124571046,+" ; protein_id "ENSP00000284287.4" ; tag basic MANE_Select appris_principal_1 ; transcript_id "OR8D1--OR8A1^ENST00000284287.6" ; transcript_name "OR8A1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
OR8D1--OR8A1 HAVANA gene 4219 5244 . + . FI_gene_label "OR8D1^ENSG00000196341.3" ; ID "OR8D1--OR8A1^OR8D1^ENSG00000196341.3" ; ccdsid "CCDS31706.1" ; exon_id "ENSE00001413995.2" ; exon_number 1 ; gene_id "OR8D1--OR8A1^OR8D1^ENSG00000196341.3" ; gene_name OR8D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165977.2" ; havana_transcript "OTTHUMT00000387285.2" ; hgnc_id "HGNC:8481" ; level 2 ; orig_coord_info "chr11,124309843,124310766,-" ; protein_id "ENSP00000350474.2" ; tag basic appris_principal_1 CCDS ; transcript_id "OR8D1--OR8A1^ENST00000357821.2" ; transcript_name "OR8D1-201" ; transcript_support_level NA ; transcript_type protein_coding
OR8D1--OR8A1 HAVANA mRNA 4219 5244 . + . FI_gene_label "OR8D1^ENSG00000196341.3" ; ID "OR8D1--OR8A1^ENST00000357821.2" ; Parent "OR8D1--OR8A1^OR8D1^ENSG00000196341.3" ; ccdsid "CCDS31706.1" ; exon_id "ENSE00001413995.2" ; exon_number 1 ; gene_id "OR8D1--OR8A1^OR8D1^ENSG00000196341.3" ; gene_name OR8D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165977.2" ; havana_transcript "OTTHUMT00000387285.2" ; hgnc_id "HGNC:8481" ; level 2 ; orig_coord_info "chr11,124309843,124310766,-" ; protein_id "ENSP00000350474.2" ; tag basic appris_principal_1 CCDS ; transcript_id "OR8D1--OR8A1^ENST00000357821.2" ; transcript_name "OR8D1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
OTUD7B--AC242988.2 HAVANA gene 1052 14793 . + . FI_gene_label "OTUD7B^ENSG00000264522.6" ; ID "OTUD7B--AC242988.2^OTUD7B^ENSG00000264522.6" ; exon_id "ENSE00001666491.1" ; exon_number 2 ; gene_id "OTUD7B--AC242988.2^OTUD7B^ENSG00000264522.6" ; gene_name OTUD7B ; gene_type protein_coding ; havana_gene "OTTHUMG00000012291.7" ; havana_transcript "OTTHUMT00000034148.2" ; hgnc_id "HGNC:16683" ; level 2 ; orig_coord_info "chr1,149977426,149977510,-" ; protein_id "ENSP00000408231.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "OTUD7B--AC242988.2^ENST00000417191.2" ; transcript_name "OTUD7B-201" ; transcript_support_level 1 ; transcript_type protein_coding
OTUD7B--AC242988.2 HAVANA mRNA 1052 14793 . + . FI_gene_label "OTUD7B^ENSG00000264522.6" ; ID "OTUD7B--AC242988.2^ENST00000417191.2" ; Parent "OTUD7B--AC242988.2^OTUD7B^ENSG00000264522.6" ; exon_id "ENSE00001666491.1" ; exon_number 2 ; gene_id "OTUD7B--AC242988.2^OTUD7B^ENSG00000264522.6" ; gene_name OTUD7B ; gene_type protein_coding ; havana_gene "OTTHUMG00000012291.7" ; havana_transcript "OTTHUMT00000034148.2" ; hgnc_id "HGNC:16683" ; level 2 ; orig_coord_info "chr1,149977426,149977510,-" ; protein_id "ENSP00000408231.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "OTUD7B--AC242988.2^ENST00000417191.2" ; transcript_name "OTUD7B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OTUD7B--PLEKHO1 HAVANA gene 26821 35936 . + . FI_gene_label "PLEKHO1^ENSG00000023902.14" ; ID "OTUD7B--PLEKHO1^PLEKHO1^ENSG00000023902.14" ; ccdsid "CCDS945.1" ; exon_id "ENSE00001915712.2" ; exon_number 1 ; gene_id "OTUD7B--PLEKHO1^PLEKHO1^ENSG00000023902.14" ; gene_name PLEKHO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012510.6" ; havana_transcript "OTTHUMT00000034962.2" ; hgnc_id "HGNC:24310" ; level 2 ; orig_coord_info "chr1,150150258,150150287,+" ; protein_id "ENSP00000358120.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "OTUD7B--PLEKHO1^ENST00000369124.5" ; transcript_name "PLEKHO1-201" ; transcript_support_level 1 ; transcript_type protein_coding
OTUD7B--PLEKHO1 HAVANA mRNA 26821 35936 . + . FI_gene_label "PLEKHO1^ENSG00000023902.14" ; ID "OTUD7B--PLEKHO1^ENST00000369124.5" ; Parent "OTUD7B--PLEKHO1^PLEKHO1^ENSG00000023902.14" ; ccdsid "CCDS945.1" ; exon_id "ENSE00001915712.2" ; exon_number 1 ; gene_id "OTUD7B--PLEKHO1^PLEKHO1^ENSG00000023902.14" ; gene_name PLEKHO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012510.6" ; havana_transcript "OTTHUMT00000034962.2" ; hgnc_id "HGNC:24310" ; level 2 ; orig_coord_info "chr1,150150258,150150287,+" ; protein_id "ENSP00000358120.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "OTUD7B--PLEKHO1^ENST00000369124.5" ; transcript_name "PLEKHO1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OTUD7B--PLEKHO1 HAVANA gene 1052 14793 . + . FI_gene_label "OTUD7B^ENSG00000264522.6" ; ID "OTUD7B--PLEKHO1^OTUD7B^ENSG00000264522.6" ; exon_id "ENSE00001666491.1" ; exon_number 2 ; gene_id "OTUD7B--PLEKHO1^OTUD7B^ENSG00000264522.6" ; gene_name OTUD7B ; gene_type protein_coding ; havana_gene "OTTHUMG00000012291.7" ; havana_transcript "OTTHUMT00000034148.2" ; hgnc_id "HGNC:16683" ; level 2 ; orig_coord_info "chr1,149977426,149977510,-" ; protein_id "ENSP00000408231.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "OTUD7B--PLEKHO1^ENST00000417191.2" ; transcript_name "OTUD7B-201" ; transcript_support_level 1 ; transcript_type protein_coding
OTUD7B--PLEKHO1 HAVANA mRNA 1052 14793 . + . FI_gene_label "OTUD7B^ENSG00000264522.6" ; ID "OTUD7B--PLEKHO1^ENST00000417191.2" ; Parent "OTUD7B--PLEKHO1^OTUD7B^ENSG00000264522.6" ; exon_id "ENSE00001666491.1" ; exon_number 2 ; gene_id "OTUD7B--PLEKHO1^OTUD7B^ENSG00000264522.6" ; gene_name OTUD7B ; gene_type protein_coding ; havana_gene "OTTHUMG00000012291.7" ; havana_transcript "OTTHUMT00000034148.2" ; hgnc_id "HGNC:16683" ; level 2 ; orig_coord_info "chr1,149977426,149977510,-" ; protein_id "ENSP00000408231.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "OTUD7B--PLEKHO1^ENST00000417191.2" ; transcript_name "OTUD7B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PHIP--IL20RA HAVANA gene 1001 42409 . + . FI_gene_label "PHIP^ENSG00000146247.14" ; ID "PHIP--IL20RA^PHIP^ENSG00000146247.14" ; ccdsid "CCDS4987.1" ; exon_id "ENSE00001882565.2" ; exon_number 1 ; gene_id "PHIP--IL20RA^PHIP^ENSG00000146247.14" ; gene_name PHIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000015071.3" ; havana_transcript "OTTHUMT00000041297.3" ; hgnc_id "HGNC:15673" ; level 2 ; orig_coord_info "chr6,79078029,79078068,-" ; protein_id "ENSP00000275034.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PHIP--IL20RA^ENST00000275034.5" ; transcript_name "PHIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
PHIP--IL20RA HAVANA mRNA 1001 42409 . + . FI_gene_label "PHIP^ENSG00000146247.14" ; ID "PHIP--IL20RA^ENST00000275034.5" ; Parent "PHIP--IL20RA^PHIP^ENSG00000146247.14" ; ccdsid "CCDS4987.1" ; exon_id "ENSE00001882565.2" ; exon_number 1 ; gene_id "PHIP--IL20RA^PHIP^ENSG00000146247.14" ; gene_name PHIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000015071.3" ; havana_transcript "OTTHUMT00000041297.3" ; hgnc_id "HGNC:15673" ; level 2 ; orig_coord_info "chr6,79078029,79078068,-" ; protein_id "ENSP00000275034.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PHIP--IL20RA^ENST00000275034.5" ; transcript_name "PHIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PHIP--IL20RA HAVANA gene 45626 57611 . + . FI_gene_label "IL20RA^ENSG00000016402.13" ; ID "PHIP--IL20RA^IL20RA^ENSG00000016402.13" ; ccdsid "CCDS5181.1" ; exon_id "ENSE00003662789.1" ; exon_number 1 ; gene_id "PHIP--IL20RA^IL20RA^ENSG00000016402.13" ; gene_name IL20RA ; gene_type protein_coding ; havana_gene "OTTHUMG00000015654.2" ; havana_transcript "OTTHUMT00000042393.1" ; hgnc_id "HGNC:6003" ; level 2 ; orig_coord_info "chr6,137044641,137044728,-" ; protein_id "ENSP00000314976.5" ; tag basic appris_principal_1 CCDS ; transcript_id "PHIP--IL20RA^ENST00000316649.9" ; transcript_name "IL20RA-201" ; transcript_support_level 1 ; transcript_type protein_coding
PHIP--IL20RA HAVANA mRNA 45626 57611 . + . FI_gene_label "IL20RA^ENSG00000016402.13" ; ID "PHIP--IL20RA^ENST00000316649.9" ; Parent "PHIP--IL20RA^IL20RA^ENSG00000016402.13" ; ccdsid "CCDS5181.1" ; exon_id "ENSE00003662789.1" ; exon_number 1 ; gene_id "PHIP--IL20RA^IL20RA^ENSG00000016402.13" ; gene_name IL20RA ; gene_type protein_coding ; havana_gene "OTTHUMG00000015654.2" ; havana_transcript "OTTHUMT00000042393.1" ; hgnc_id "HGNC:6003" ; level 2 ; orig_coord_info "chr6,137044641,137044728,-" ; protein_id "ENSP00000314976.5" ; tag basic appris_principal_1 CCDS ; transcript_id "PHIP--IL20RA^ENST00000316649.9" ; transcript_name "IL20RA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PI4KB--CTSS HAVANA gene 1297 16689 . + . FI_gene_label "PI4KB^ENSG00000143393.16" ; ID "PI4KB--CTSS^PI4KB^ENSG00000143393.16" ; ccdsid "CCDS55638.1" ; exon_id "ENSE00003463601.1" ; exon_number 4 ; gene_id "PI4KB--CTSS^PI4KB^ENSG00000143393.16" ; gene_name PI4KB ; gene_type protein_coding ; havana_gene "OTTHUMG00000012348.14" ; havana_transcript "OTTHUMT00000034403.1" ; hgnc_id "HGNC:8984" ; level 2 ; orig_coord_info "chr1,151315573,151316481,-" ; protein_id "ENSP00000357866.1" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "PI4KB--CTSS^ENST00000368872.5" ; transcript_name "PI4KB-201" ; transcript_support_level 5 ; transcript_type protein_coding
PI4KB--CTSS HAVANA mRNA 1297 16689 . + . FI_gene_label "PI4KB^ENSG00000143393.16" ; ID "PI4KB--CTSS^ENST00000368872.5" ; Parent "PI4KB--CTSS^PI4KB^ENSG00000143393.16" ; ccdsid "CCDS55638.1" ; exon_id "ENSE00003463601.1" ; exon_number 4 ; gene_id "PI4KB--CTSS^PI4KB^ENSG00000143393.16" ; gene_name PI4KB ; gene_type protein_coding ; havana_gene "OTTHUMG00000012348.14" ; havana_transcript "OTTHUMT00000034403.1" ; hgnc_id "HGNC:8984" ; level 2 ; orig_coord_info "chr1,151315573,151316481,-" ; protein_id "ENSP00000357866.1" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "PI4KB--CTSS^ENST00000368872.5" ; transcript_name "PI4KB-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PI4KB--CTSS HAVANA gene 20551 35019 . + . FI_gene_label "CTSS^ENSG00000163131.12" ; ID "PI4KB--CTSS^CTSS^ENSG00000163131.12" ; ccdsid "CCDS968.1" ; exon_id "ENSE00001448523.1" ; exon_number 2 ; gene_id "PI4KB--CTSS^CTSS^ENSG00000163131.12" ; gene_name CTSS ; gene_type protein_coding ; havana_gene "OTTHUMG00000035010.3" ; havana_transcript "OTTHUMT00000084737.2" ; hgnc_id "HGNC:2545" ; level 2 ; orig_coord_info "chr1,150764638,150764763,-" ; protein_id "ENSP00000357981.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PI4KB--CTSS^ENST00000368985.8" ; transcript_name "CTSS-201" ; transcript_support_level 1 ; transcript_type protein_coding
PI4KB--CTSS HAVANA mRNA 20551 35019 . + . FI_gene_label "CTSS^ENSG00000163131.12" ; ID "PI4KB--CTSS^ENST00000368985.8" ; Parent "PI4KB--CTSS^CTSS^ENSG00000163131.12" ; ccdsid "CCDS968.1" ; exon_id "ENSE00001448523.1" ; exon_number 2 ; gene_id "PI4KB--CTSS^CTSS^ENSG00000163131.12" ; gene_name CTSS ; gene_type protein_coding ; havana_gene "OTTHUMG00000035010.3" ; havana_transcript "OTTHUMT00000084737.2" ; hgnc_id "HGNC:2545" ; level 2 ; orig_coord_info "chr1,150764638,150764763,-" ; protein_id "ENSP00000357981.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PI4KB--CTSS^ENST00000368985.8" ; transcript_name "CTSS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PIP5K1A--LINC02799 HAVANA gene 1603 20185 . + . FI_gene_label "PIP5K1A^ENSG00000143398.20" ; ID "PIP5K1A--LINC02799^PIP5K1A^ENSG00000143398.20" ; ccdsid "CCDS990.1" ; exon_id "ENSE00001954901.1" ; exon_number 1 ; gene_id "PIP5K1A--LINC02799^PIP5K1A^ENSG00000143398.20" ; gene_name PIP5K1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000012351.22" ; havana_transcript "OTTHUMT00000034424.2" ; hgnc_id "HGNC:8994" ; level 2 ; orig_coord_info "chr1,151198997,151199081,+" ; protein_id "ENSP00000271663.7" ; tag mRNA_start_NF appris_alternative_2 CCDS ; transcript_id "PIP5K1A--LINC02799^ENST00000349792.9" ; transcript_name "PIP5K1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
PIP5K1A--LINC02799 HAVANA mRNA 1603 20185 . + . FI_gene_label "PIP5K1A^ENSG00000143398.20" ; ID "PIP5K1A--LINC02799^ENST00000349792.9" ; Parent "PIP5K1A--LINC02799^PIP5K1A^ENSG00000143398.20" ; ccdsid "CCDS990.1" ; exon_id "ENSE00001954901.1" ; exon_number 1 ; gene_id "PIP5K1A--LINC02799^PIP5K1A^ENSG00000143398.20" ; gene_name PIP5K1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000012351.22" ; havana_transcript "OTTHUMT00000034424.2" ; hgnc_id "HGNC:8994" ; level 2 ; orig_coord_info "chr1,151198997,151199081,+" ; protein_id "ENSP00000271663.7" ; tag mRNA_start_NF appris_alternative_2 CCDS ; transcript_id "PIP5K1A--LINC02799^ENST00000349792.9" ; transcript_name "PIP5K1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTK2--AGO2 HAVANA gene 64303 98236 . + . FI_gene_label "AGO2^ENSG00000123908.12" ; ID "PTK2--AGO2^AGO2^ENSG00000123908.12" ; ccdsid "CCDS6380.1" ; exon_id "ENSE00002115766.2" ; exon_number 1 ; gene_id "PTK2--AGO2^AGO2^ENSG00000123908.12" ; gene_name AGO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164232.7" ; havana_transcript "OTTHUMT00000377866.6" ; hgnc_id "HGNC:3263" ; level 2 ; orig_coord_info "chr8,140635485,140635506,-" ; protein_id "ENSP00000220592.5" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTK2--AGO2^ENST00000220592.10" ; transcript_name "AGO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTK2--AGO2 HAVANA mRNA 64303 98236 . + . FI_gene_label "AGO2^ENSG00000123908.12" ; ID "PTK2--AGO2^ENST00000220592.10" ; Parent "PTK2--AGO2^AGO2^ENSG00000123908.12" ; ccdsid "CCDS6380.1" ; exon_id "ENSE00002115766.2" ; exon_number 1 ; gene_id "PTK2--AGO2^AGO2^ENSG00000123908.12" ; gene_name AGO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164232.7" ; havana_transcript "OTTHUMT00000377866.6" ; hgnc_id "HGNC:3263" ; level 2 ; orig_coord_info "chr8,140635485,140635506,-" ; protein_id "ENSP00000220592.5" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTK2--AGO2^ENST00000220592.10" ; transcript_name "AGO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTK2--AGO2 HAVANA gene 2059 60797 . + . FI_gene_label "PTK2^ENSG00000169398.19" ; ID "PTK2--AGO2^PTK2^ENSG00000169398.19" ; ccdsid "CCDS56557.1" ; exon_id "ENSE00003798215.1" ; exon_number 3 ; gene_id "PTK2--AGO2^PTK2^ENSG00000169398.19" ; gene_name PTK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000067438.25" ; havana_transcript "OTTHUMT00000378103.1" ; hgnc_id "HGNC:9611" ; level 2 ; orig_coord_info "chr8,140890543,140890737,-" ; protein_id "ENSP00000341189.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "PTK2--AGO2^ENST00000340930.7" ; transcript_name "PTK2-201" ; transcript_support_level 2 ; transcript_type protein_coding
PTK2--AGO2 HAVANA mRNA 2059 60797 . + . FI_gene_label "PTK2^ENSG00000169398.19" ; ID "PTK2--AGO2^ENST00000340930.7" ; Parent "PTK2--AGO2^PTK2^ENSG00000169398.19" ; ccdsid "CCDS56557.1" ; exon_id "ENSE00003798215.1" ; exon_number 3 ; gene_id "PTK2--AGO2^PTK2^ENSG00000169398.19" ; gene_name PTK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000067438.25" ; havana_transcript "OTTHUMT00000378103.1" ; hgnc_id "HGNC:9611" ; level 2 ; orig_coord_info "chr8,140890543,140890737,-" ; protein_id "ENSP00000341189.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "PTK2--AGO2^ENST00000340930.7" ; transcript_name "PTK2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PTPN20--BMS1P7 ENSEMBL gene 1043 20316 . + . FI_gene_label "PTPN20^ENSG00000204179.10" ; ID "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; ccdsid "CCDS73114.1" ; exon_id "ENSE00003719491.1" ; exon_number 4 ; gene_id "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; gene_name PTPN20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018094.10" ; hgnc_id "HGNC:23423" ; level 3 ; orig_coord_info "chr10,46946579,46946675,+" ; protein_id "ENSP00000363335.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PTPN20--BMS1P7^ENST00000374218.6" ; transcript_name "PTPN20-201" ; transcript_support_level 5 ; transcript_type protein_coding
PTPN20--BMS1P7 ENSEMBL mRNA 1043 20316 . + . FI_gene_label "PTPN20^ENSG00000204179.10" ; ID "PTPN20--BMS1P7^ENST00000374218.6" ; Parent "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; ccdsid "CCDS73114.1" ; exon_id "ENSE00003719491.1" ; exon_number 4 ; gene_id "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; gene_name PTPN20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018094.10" ; hgnc_id "HGNC:23423" ; level 3 ; orig_coord_info "chr10,46946579,46946675,+" ; protein_id "ENSP00000363335.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PTPN20--BMS1P7^ENST00000374218.6" ; transcript_name "PTPN20-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RAB25--OLFML2B HAVANA gene 8743 18699 . + . FI_gene_label "OLFML2B^ENSG00000162745.11" ; ID "RAB25--OLFML2B^OLFML2B^ENSG00000162745.11" ; ccdsid "CCDS1236.1" ; exon_id "ENSE00001429357.2" ; exon_number 1 ; gene_id "RAB25--OLFML2B^OLFML2B^ENSG00000162745.11" ; gene_name OLFML2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000024047.2" ; havana_transcript "OTTHUMT00000060552.2" ; hgnc_id "HGNC:24558" ; level 2 ; orig_coord_info "chr1,162023257,162023430,-" ; protein_id "ENSP00000294794.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RAB25--OLFML2B^ENST00000294794.8" ; transcript_name "OLFML2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAB25--OLFML2B HAVANA mRNA 8743 18699 . + . FI_gene_label "OLFML2B^ENSG00000162745.11" ; ID "RAB25--OLFML2B^ENST00000294794.8" ; Parent "RAB25--OLFML2B^OLFML2B^ENSG00000162745.11" ; ccdsid "CCDS1236.1" ; exon_id "ENSE00001429357.2" ; exon_number 1 ; gene_id "RAB25--OLFML2B^OLFML2B^ENSG00000162745.11" ; gene_name OLFML2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000024047.2" ; havana_transcript "OTTHUMT00000060552.2" ; hgnc_id "HGNC:24558" ; level 2 ; orig_coord_info "chr1,162023257,162023430,-" ; protein_id "ENSP00000294794.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RAB25--OLFML2B^ENST00000294794.8" ; transcript_name "OLFML2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RAB25--OLFML2B HAVANA gene 1001 5742 . + . FI_gene_label "RAB25^ENSG00000132698.15" ; ID "RAB25--OLFML2B^RAB25^ENSG00000132698.15" ; ccdsid "CCDS41413.1" ; exon_id "ENSE00001842111.1" ; exon_number 1 ; gene_id "RAB25--OLFML2B^RAB25^ENSG00000132698.15" ; gene_name RAB25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017457.3" ; havana_transcript "OTTHUMT00000046185.3" ; hgnc_id "HGNC:18238" ; level 2 ; orig_coord_info "chr1,156061401,156061443,+" ; protein_id "ENSP00000354376.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAB25--OLFML2B^ENST00000361084.10" ; transcript_name "RAB25-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAB25--OLFML2B HAVANA mRNA 1001 5742 . + . FI_gene_label "RAB25^ENSG00000132698.15" ; ID "RAB25--OLFML2B^ENST00000361084.10" ; Parent "RAB25--OLFML2B^RAB25^ENSG00000132698.15" ; ccdsid "CCDS41413.1" ; exon_id "ENSE00001842111.1" ; exon_number 1 ; gene_id "RAB25--OLFML2B^RAB25^ENSG00000132698.15" ; gene_name RAB25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017457.3" ; havana_transcript "OTTHUMT00000046185.3" ; hgnc_id "HGNC:18238" ; level 2 ; orig_coord_info "chr1,156061401,156061443,+" ; protein_id "ENSP00000354376.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAB25--OLFML2B^ENST00000361084.10" ; transcript_name "RAB25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBMXL1--GBP2 HAVANA gene 1189 8087 . + . FI_gene_label "RBMXL1^ENSG00000213516.10" ; ID "RBMXL1--GBP2^RBMXL1^ENSG00000213516.10" ; ccdsid "CCDS716.1" ; exon_id "ENSE00001262871.8" ; exon_number 2 ; gene_id "RBMXL1--GBP2^RBMXL1^ENSG00000213516.10" ; gene_name RBMXL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010661.6" ; havana_transcript "OTTHUMT00000029403.3" ; hgnc_id "HGNC:25073" ; level 2 ; orig_coord_info "chr1,88982657,88983826,-" ; protein_id "ENSP00000318415.5" ; tag basic appris_principal_1 CCDS ; transcript_id "RBMXL1--GBP2^ENST00000321792.5" ; transcript_name "RBMXL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBMXL1--GBP2 HAVANA mRNA 1189 8087 . + . FI_gene_label "RBMXL1^ENSG00000213516.10" ; ID "RBMXL1--GBP2^ENST00000321792.5" ; Parent "RBMXL1--GBP2^RBMXL1^ENSG00000213516.10" ; ccdsid "CCDS716.1" ; exon_id "ENSE00001262871.8" ; exon_number 2 ; gene_id "RBMXL1--GBP2^RBMXL1^ENSG00000213516.10" ; gene_name RBMXL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010661.6" ; havana_transcript "OTTHUMT00000029403.3" ; hgnc_id "HGNC:25073" ; level 2 ; orig_coord_info "chr1,88982657,88983826,-" ; protein_id "ENSP00000318415.5" ; tag basic appris_principal_1 CCDS ; transcript_id "RBMXL1--GBP2^ENST00000321792.5" ; transcript_name "RBMXL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBMXL1--GBP2 HAVANA gene 14466 28284 . + . FI_gene_label "GBP2^ENSG00000162645.13" ; ID "RBMXL1--GBP2^GBP2^ENSG00000162645.13" ; ccdsid "CCDS719.1" ; exon_id "ENSE00002151490.1" ; exon_number 2 ; gene_id "RBMXL1--GBP2^GBP2^ENSG00000162645.13" ; gene_name GBP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010662.5" ; havana_transcript "OTTHUMT00000029406.3" ; hgnc_id "HGNC:4183" ; level 2 ; orig_coord_info "chr1,89121777,89121966,-" ; protein_id "ENSP00000359497.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBMXL1--GBP2^ENST00000370466.4" ; transcript_name "GBP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBMXL1--GBP2 HAVANA mRNA 14466 28284 . + . FI_gene_label "GBP2^ENSG00000162645.13" ; ID "RBMXL1--GBP2^ENST00000370466.4" ; Parent "RBMXL1--GBP2^GBP2^ENSG00000162645.13" ; ccdsid "CCDS719.1" ; exon_id "ENSE00002151490.1" ; exon_number 2 ; gene_id "RBMXL1--GBP2^GBP2^ENSG00000162645.13" ; gene_name GBP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010662.5" ; havana_transcript "OTTHUMT00000029406.3" ; hgnc_id "HGNC:4183" ; level 2 ; orig_coord_info "chr1,89121777,89121966,-" ; protein_id "ENSP00000359497.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBMXL1--GBP2^ENST00000370466.4" ; transcript_name "GBP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF115--KALRN HAVANA gene 25722 73936 . + . FI_gene_label "KALRN^ENSG00000160145.15" ; ID "RNF115--KALRN^KALRN^ENSG00000160145.15" ; ccdsid "CCDS3027.1" ; exon_id "ENSE00001813225.1" ; exon_number 1 ; gene_id "RNF115--KALRN^KALRN^ENSG00000160145.15" ; gene_name KALRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000125545.14" ; havana_transcript "OTTHUMT00000258843.4" ; hgnc_id "HGNC:4814" ; level 2 ; orig_coord_info "chr3,124094838,124094904,+" ; protein_id "ENSP00000240874.3" ; tag basic CCDS ; transcript_id "RNF115--KALRN^ENST00000240874.7" ; transcript_name "KALRN-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF115--KALRN HAVANA mRNA 25722 73936 . + . FI_gene_label "KALRN^ENSG00000160145.15" ; ID "RNF115--KALRN^ENST00000240874.7" ; Parent "RNF115--KALRN^KALRN^ENSG00000160145.15" ; ccdsid "CCDS3027.1" ; exon_id "ENSE00001813225.1" ; exon_number 1 ; gene_id "RNF115--KALRN^KALRN^ENSG00000160145.15" ; gene_name KALRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000125545.14" ; havana_transcript "OTTHUMT00000258843.4" ; hgnc_id "HGNC:4814" ; level 2 ; orig_coord_info "chr3,124094838,124094904,+" ; protein_id "ENSP00000240874.3" ; tag basic CCDS ; transcript_id "RNF115--KALRN^ENST00000240874.7" ; transcript_name "KALRN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF115--KALRN HAVANA gene 1001 19993 . + . FI_gene_label "RNF115^ENSG00000265491.5" ; ID "RNF115--KALRN^RNF115^ENSG00000265491.5" ; ccdsid "CCDS72863.1" ; exon_id "ENSE00002694107.5" ; exon_number 1 ; gene_id "RNF115--KALRN^RNF115^ENSG00000265491.5" ; gene_name RNF115 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013758.7" ; havana_transcript "OTTHUMT00000038554.5" ; hgnc_id "HGNC:18154" ; level 2 ; orig_coord_info "chr1,145823772,145823873,-" ; protein_id "ENSP00000463650.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF115--KALRN^ENST00000582693.5" ; transcript_name "RNF115-202" ; transcript_support_level 1 ; transcript_type protein_coding
RNF115--KALRN HAVANA mRNA 1001 19993 . + . FI_gene_label "RNF115^ENSG00000265491.5" ; ID "RNF115--KALRN^ENST00000582693.5" ; Parent "RNF115--KALRN^RNF115^ENSG00000265491.5" ; ccdsid "CCDS72863.1" ; exon_id "ENSE00002694107.5" ; exon_number 1 ; gene_id "RNF115--KALRN^RNF115^ENSG00000265491.5" ; gene_name RNF115 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013758.7" ; havana_transcript "OTTHUMT00000038554.5" ; hgnc_id "HGNC:18154" ; level 2 ; orig_coord_info "chr1,145823772,145823873,-" ; protein_id "ENSP00000463650.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF115--KALRN^ENST00000582693.5" ; transcript_name "RNF115-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPRD2--CTXND2 HAVANA gene 2367 6556 . + . FI_gene_label "RPRD2^ENSG00000163125.15" ; ID "RPRD2--CTXND2^RPRD2^ENSG00000163125.15" ; exon_id "ENSE00001917042.1" ; exon_number 1 ; gene_id "RPRD2--CTXND2^RPRD2^ENSG00000163125.15" ; gene_name RPRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012808.2" ; havana_transcript "OTTHUMT00000035845.1" ; hgnc_id "HGNC:29039" ; level 2 ; orig_coord_info "chr1,150364715,150364919,+" ; protein_id "ENSP00000358063.3" ; tag basic ; transcript_id "RPRD2--CTXND2^ENST00000369067.7" ; transcript_name "RPRD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
RPRD2--CTXND2 HAVANA mRNA 2367 6556 . + . FI_gene_label "RPRD2^ENSG00000163125.15" ; ID "RPRD2--CTXND2^ENST00000369067.7" ; Parent "RPRD2--CTXND2^RPRD2^ENSG00000163125.15" ; exon_id "ENSE00001917042.1" ; exon_number 1 ; gene_id "RPRD2--CTXND2^RPRD2^ENSG00000163125.15" ; gene_name RPRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012808.2" ; havana_transcript "OTTHUMT00000035845.1" ; hgnc_id "HGNC:29039" ; level 2 ; orig_coord_info "chr1,150364715,150364919,+" ; protein_id "ENSP00000358063.3" ; tag basic ; transcript_id "RPRD2--CTXND2^ENST00000369067.7" ; transcript_name "RPRD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RPRD2--CTXND2 HAVANA gene 23963 26191 . + . FI_gene_label "CTXND2^ENSG00000283324.1" ; ID "RPRD2--CTXND2^CTXND2^ENSG00000283324.1" ; exon_id "ENSE00003793610.1" ; exon_number 2 ; gene_id "RPRD2--CTXND2^CTXND2^ENSG00000283324.1" ; gene_name CTXND2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191721.1" ; havana_transcript "OTTHUMT00000489688.1" ; hgnc_id "HGNC:53440" ; level 2 ; orig_coord_info "chr1,150912315,150912479,+" ; protein_id "ENSP00000490418.1" ; tag RNA_Seq_supported_only basic appris_principal_1 ; transcript_id "RPRD2--CTXND2^ENST00000636087.1" ; transcript_name "CTXND2-201" ; transcript_support_level 2 ; transcript_type protein_coding
RPRD2--CTXND2 HAVANA mRNA 23963 26191 . + . FI_gene_label "CTXND2^ENSG00000283324.1" ; ID "RPRD2--CTXND2^ENST00000636087.1" ; Parent "RPRD2--CTXND2^CTXND2^ENSG00000283324.1" ; exon_id "ENSE00003793610.1" ; exon_number 2 ; gene_id "RPRD2--CTXND2^CTXND2^ENSG00000283324.1" ; gene_name CTXND2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191721.1" ; havana_transcript "OTTHUMT00000489688.1" ; hgnc_id "HGNC:53440" ; level 2 ; orig_coord_info "chr1,150912315,150912479,+" ; protein_id "ENSP00000490418.1" ; tag RNA_Seq_supported_only basic appris_principal_1 ; transcript_id "RPRD2--CTXND2^ENST00000636087.1" ; transcript_name "CTXND2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RPRD2--SETDB1 HAVANA gene 24039 44142 . + . FI_gene_label "SETDB1^ENSG00000143379.12" ; ID "RPRD2--SETDB1^SETDB1^ENSG00000143379.12" ; ccdsid "CCDS44217.1" ; exon_id "ENSE00003524194.1" ; exon_number 2 ; gene_id "RPRD2--SETDB1^SETDB1^ENSG00000143379.12" ; gene_name SETDB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035003.7" ; havana_transcript "OTTHUMT00000084717.2" ; hgnc_id "HGNC:10761" ; level 2 ; orig_coord_info "chr1,150927715,150927974,+" ; protein_id "ENSP00000271640.5" ; tag basic appris_principal_2 CCDS ; transcript_id "RPRD2--SETDB1^ENST00000271640.9" ; transcript_name "SETDB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPRD2--SETDB1 HAVANA mRNA 24039 44142 . + . FI_gene_label "SETDB1^ENSG00000143379.12" ; ID "RPRD2--SETDB1^ENST00000271640.9" ; Parent "RPRD2--SETDB1^SETDB1^ENSG00000143379.12" ; ccdsid "CCDS44217.1" ; exon_id "ENSE00003524194.1" ; exon_number 2 ; gene_id "RPRD2--SETDB1^SETDB1^ENSG00000143379.12" ; gene_name SETDB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035003.7" ; havana_transcript "OTTHUMT00000084717.2" ; hgnc_id "HGNC:10761" ; level 2 ; orig_coord_info "chr1,150927715,150927974,+" ; protein_id "ENSP00000271640.5" ; tag basic appris_principal_2 CCDS ; transcript_id "RPRD2--SETDB1^ENST00000271640.9" ; transcript_name "SETDB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPRD2--SETDB1 HAVANA gene 2367 6556 . + . FI_gene_label "RPRD2^ENSG00000163125.15" ; ID "RPRD2--SETDB1^RPRD2^ENSG00000163125.15" ; exon_id "ENSE00001917042.1" ; exon_number 1 ; gene_id "RPRD2--SETDB1^RPRD2^ENSG00000163125.15" ; gene_name RPRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012808.2" ; havana_transcript "OTTHUMT00000035845.1" ; hgnc_id "HGNC:29039" ; level 2 ; orig_coord_info "chr1,150364715,150364919,+" ; protein_id "ENSP00000358063.3" ; tag basic ; transcript_id "RPRD2--SETDB1^ENST00000369067.7" ; transcript_name "RPRD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
RPRD2--SETDB1 HAVANA mRNA 2367 6556 . + . FI_gene_label "RPRD2^ENSG00000163125.15" ; ID "RPRD2--SETDB1^ENST00000369067.7" ; Parent "RPRD2--SETDB1^RPRD2^ENSG00000163125.15" ; exon_id "ENSE00001917042.1" ; exon_number 1 ; gene_id "RPRD2--SETDB1^RPRD2^ENSG00000163125.15" ; gene_name RPRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012808.2" ; havana_transcript "OTTHUMT00000035845.1" ; hgnc_id "HGNC:29039" ; level 2 ; orig_coord_info "chr1,150364715,150364919,+" ; protein_id "ENSP00000358063.3" ; tag basic ; transcript_id "RPRD2--SETDB1^ENST00000369067.7" ; transcript_name "RPRD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RSRC1--AC106707.1 HAVANA gene 3340 20895 . + . FI_gene_label "RSRC1^ENSG00000174891.13" ; ID "RSRC1--AC106707.1^RSRC1^ENSG00000174891.13" ; ccdsid "CCDS3181.1" ; exon_id "ENSE00003660240.1" ; exon_number 2 ; gene_id "RSRC1--AC106707.1^RSRC1^ENSG00000174891.13" ; gene_name RSRC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158758.14" ; havana_transcript "OTTHUMT00000352063.2" ; hgnc_id "HGNC:24152" ; level 2 ; orig_coord_info "chr3,158122105,158122298,+" ; protein_id "ENSP00000295930.3" ; tag basic appris_principal_1 CCDS ; transcript_id "RSRC1--AC106707.1^ENST00000295930.7" ; transcript_name "RSRC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RSRC1--AC106707.1 HAVANA mRNA 3340 20895 . + . FI_gene_label "RSRC1^ENSG00000174891.13" ; ID "RSRC1--AC106707.1^ENST00000295930.7" ; Parent "RSRC1--AC106707.1^RSRC1^ENSG00000174891.13" ; ccdsid "CCDS3181.1" ; exon_id "ENSE00003660240.1" ; exon_number 2 ; gene_id "RSRC1--AC106707.1^RSRC1^ENSG00000174891.13" ; gene_name RSRC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158758.14" ; havana_transcript "OTTHUMT00000352063.2" ; hgnc_id "HGNC:24152" ; level 2 ; orig_coord_info "chr3,158122105,158122298,+" ; protein_id "ENSP00000295930.3" ; tag basic appris_principal_1 CCDS ; transcript_id "RSRC1--AC106707.1^ENST00000295930.7" ; transcript_name "RSRC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RTKN--BABAM2 HAVANA gene 2718 11582 . + . FI_gene_label "RTKN^ENSG00000114993.17" ; ID "RTKN--BABAM2^RTKN^ENSG00000114993.17" ; ccdsid "CCDS42699.1" ; exon_id "ENSE00003544919.1" ; exon_number 2 ; gene_id "RTKN--BABAM2^RTKN^ENSG00000114993.17" ; gene_name RTKN ; gene_type protein_coding ; havana_gene "OTTHUMG00000129955.7" ; havana_transcript "OTTHUMT00000328236.3" ; hgnc_id "HGNC:10466" ; level 1 ; orig_coord_info "chr2,74432467,74432627,-" ; protein_id "ENSP00000233330.6" ; tag basic exp_conf CCDS ; transcript_id "RTKN--BABAM2^ENST00000233330.6" ; transcript_name "RTKN-201" ; transcript_support_level 1 ; transcript_type protein_coding
RTKN--BABAM2 HAVANA mRNA 2718 11582 . + . FI_gene_label "RTKN^ENSG00000114993.17" ; ID "RTKN--BABAM2^ENST00000233330.6" ; Parent "RTKN--BABAM2^RTKN^ENSG00000114993.17" ; ccdsid "CCDS42699.1" ; exon_id "ENSE00003544919.1" ; exon_number 2 ; gene_id "RTKN--BABAM2^RTKN^ENSG00000114993.17" ; gene_name RTKN ; gene_type protein_coding ; havana_gene "OTTHUMG00000129955.7" ; havana_transcript "OTTHUMT00000328236.3" ; hgnc_id "HGNC:10466" ; level 1 ; orig_coord_info "chr2,74432467,74432627,-" ; protein_id "ENSP00000233330.6" ; tag basic exp_conf CCDS ; transcript_id "RTKN--BABAM2^ENST00000233330.6" ; transcript_name "RTKN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RTKN--BABAM2 HAVANA gene 15482 33486 . + . FI_gene_label "BABAM2^ENSG00000158019.21" ; ID "RTKN--BABAM2^BABAM2^ENSG00000158019.21" ; ccdsid "CCDS1763.1" ; exon_id "ENSE00003668458.1" ; exon_number 3 ; gene_id "RTKN--BABAM2^BABAM2^ENSG00000158019.21" ; gene_name BABAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097831.4" ; havana_transcript "OTTHUMT00000215114.1" ; hgnc_id "HGNC:1106" ; level 2 ; orig_coord_info "chr2,27894557,27894684,+" ; protein_id "ENSP00000339371.2" ; tag basic appris_principal_1 CCDS ; transcript_id "RTKN--BABAM2^ENST00000342045.6" ; transcript_name "BABAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RTKN--BABAM2 HAVANA mRNA 15482 33486 . + . FI_gene_label "BABAM2^ENSG00000158019.21" ; ID "RTKN--BABAM2^ENST00000342045.6" ; Parent "RTKN--BABAM2^BABAM2^ENSG00000158019.21" ; ccdsid "CCDS1763.1" ; exon_id "ENSE00003668458.1" ; exon_number 3 ; gene_id "RTKN--BABAM2^BABAM2^ENSG00000158019.21" ; gene_name BABAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097831.4" ; havana_transcript "OTTHUMT00000215114.1" ; hgnc_id "HGNC:1106" ; level 2 ; orig_coord_info "chr2,27894557,27894684,+" ; protein_id "ENSP00000339371.2" ; tag basic appris_principal_1 CCDS ; transcript_id "RTKN--BABAM2^ENST00000342045.6" ; transcript_name "BABAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC12A8--LINC02799 HAVANA gene 2166 25586 . + . FI_gene_label "SLC12A8^ENSG00000221955.11" ; ID "SLC12A8--LINC02799^SLC12A8^ENSG00000221955.11" ; ccdsid "CCDS43143.1" ; exon_id "ENSE00003538496.1" ; exon_number 1 ; gene_id "SLC12A8--LINC02799^SLC12A8^ENSG00000221955.11" ; gene_name SLC12A8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159483.10" ; havana_transcript "OTTHUMT00000355711.5" ; hgnc_id "HGNC:15595" ; level 2 ; orig_coord_info "chr3,125211299,125211349,-" ; protein_id "ENSP00000377112.4" ; tag basic appris_principal_1 CCDS ; transcript_id "SLC12A8--LINC02799^ENST00000393469.8" ; transcript_name "SLC12A8-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC12A8--LINC02799 HAVANA mRNA 2166 25586 . + . FI_gene_label "SLC12A8^ENSG00000221955.11" ; ID "SLC12A8--LINC02799^ENST00000393469.8" ; Parent "SLC12A8--LINC02799^SLC12A8^ENSG00000221955.11" ; ccdsid "CCDS43143.1" ; exon_id "ENSE00003538496.1" ; exon_number 1 ; gene_id "SLC12A8--LINC02799^SLC12A8^ENSG00000221955.11" ; gene_name SLC12A8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159483.10" ; havana_transcript "OTTHUMT00000355711.5" ; hgnc_id "HGNC:15595" ; level 2 ; orig_coord_info "chr3,125211299,125211349,-" ; protein_id "ENSP00000377112.4" ; tag basic appris_principal_1 CCDS ; transcript_id "SLC12A8--LINC02799^ENST00000393469.8" ; transcript_name "SLC12A8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC5A4P1--OR8A1 HAVANA gene 5658 7035 . + . FI_gene_label "OR8A1^ENSG00000196119.8" ; ID "SLC5A4P1--OR8A1^OR8A1^ENSG00000196119.8" ; exon_id "ENSE00001014261.5" ; exon_number 1 ; gene_id "SLC5A4P1--OR8A1^OR8A1^ENSG00000196119.8" ; gene_name OR8A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165923.3" ; havana_transcript "OTTHUMT00000387062.3" ; hgnc_id "HGNC:8469" ; level 2 ; orig_coord_info "chr11,124570120,124571046,+" ; protein_id "ENSP00000284287.4" ; tag basic MANE_Select appris_principal_1 ; transcript_id "SLC5A4P1--OR8A1^ENST00000284287.6" ; transcript_name "OR8A1-201" ; transcript_support_level NA ; transcript_type protein_coding
SLC5A4P1--OR8A1 HAVANA mRNA 5658 7035 . + . FI_gene_label "OR8A1^ENSG00000196119.8" ; ID "SLC5A4P1--OR8A1^ENST00000284287.6" ; Parent "SLC5A4P1--OR8A1^OR8A1^ENSG00000196119.8" ; exon_id "ENSE00001014261.5" ; exon_number 1 ; gene_id "SLC5A4P1--OR8A1^OR8A1^ENSG00000196119.8" ; gene_name OR8A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165923.3" ; havana_transcript "OTTHUMT00000387062.3" ; hgnc_id "HGNC:8469" ; level 2 ; orig_coord_info "chr11,124570120,124571046,+" ; protein_id "ENSP00000284287.4" ; tag basic MANE_Select appris_principal_1 ; transcript_id "SLC5A4P1--OR8A1^ENST00000284287.6" ; transcript_name "OR8A1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
SNX27--AC244015.1 HAVANA gene 4173 24749 . + . FI_gene_label "SNX27^ENSG00000143376.14" ; ID "SNX27--AC244015.1^SNX27^ENSG00000143376.14" ; exon_id "ENSE00003819455.1" ; exon_number 1 ; gene_id "SNX27--AC244015.1^SNX27^ENSG00000143376.14" ; gene_name SNX27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013052.12" ; havana_transcript "OTTHUMT00000496117.1" ; hgnc_id "HGNC:20073" ; level 2 ; orig_coord_info "chr1,151638980,151639119,+" ; protein_id "ENSP00000357831.2" ; tag mRNA_start_NF cds_start_NF RNA_Seq_supported_only ; transcript_id "SNX27--AC244015.1^ENST00000368838.2" ; transcript_name "SNX27-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNX27--AC244015.1 HAVANA mRNA 4173 24749 . + . FI_gene_label "SNX27^ENSG00000143376.14" ; ID "SNX27--AC244015.1^ENST00000368838.2" ; Parent "SNX27--AC244015.1^SNX27^ENSG00000143376.14" ; exon_id "ENSE00003819455.1" ; exon_number 1 ; gene_id "SNX27--AC244015.1^SNX27^ENSG00000143376.14" ; gene_name SNX27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013052.12" ; havana_transcript "OTTHUMT00000496117.1" ; hgnc_id "HGNC:20073" ; level 2 ; orig_coord_info "chr1,151638980,151639119,+" ; protein_id "ENSP00000357831.2" ; tag mRNA_start_NF cds_start_NF RNA_Seq_supported_only ; transcript_id "SNX27--AC244015.1^ENST00000368838.2" ; transcript_name "SNX27-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNX27--IGKV1OR1-1 HAVANA gene 4173 24749 . + . FI_gene_label "SNX27^ENSG00000143376.14" ; ID "SNX27--IGKV1OR1-1^SNX27^ENSG00000143376.14" ; exon_id "ENSE00003819455.1" ; exon_number 1 ; gene_id "SNX27--IGKV1OR1-1^SNX27^ENSG00000143376.14" ; gene_name SNX27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013052.12" ; havana_transcript "OTTHUMT00000496117.1" ; hgnc_id "HGNC:20073" ; level 2 ; orig_coord_info "chr1,151638980,151639119,+" ; protein_id "ENSP00000357831.2" ; tag mRNA_start_NF cds_start_NF RNA_Seq_supported_only ; transcript_id "SNX27--IGKV1OR1-1^ENST00000368838.2" ; transcript_name "SNX27-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNX27--IGKV1OR1-1 HAVANA mRNA 4173 24749 . + . FI_gene_label "SNX27^ENSG00000143376.14" ; ID "SNX27--IGKV1OR1-1^ENST00000368838.2" ; Parent "SNX27--IGKV1OR1-1^SNX27^ENSG00000143376.14" ; exon_id "ENSE00003819455.1" ; exon_number 1 ; gene_id "SNX27--IGKV1OR1-1^SNX27^ENSG00000143376.14" ; gene_name SNX27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013052.12" ; havana_transcript "OTTHUMT00000496117.1" ; hgnc_id "HGNC:20073" ; level 2 ; orig_coord_info "chr1,151638980,151639119,+" ; protein_id "ENSP00000357831.2" ; tag mRNA_start_NF cds_start_NF RNA_Seq_supported_only ; transcript_id "SNX27--IGKV1OR1-1^ENST00000368838.2" ; transcript_name "SNX27-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNX31--YWHAZ HAVANA gene 3419 19749 . + . FI_gene_label "SNX31^ENSG00000174226.9" ; ID "SNX31--YWHAZ^SNX31^ENSG00000174226.9" ; ccdsid "CCDS6288.1" ; exon_id "ENSE00001265171.3" ; exon_number 1 ; gene_id "SNX31--YWHAZ^SNX31^ENSG00000174226.9" ; gene_name SNX31 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164725.5" ; havana_transcript "OTTHUMT00000379910.3" ; hgnc_id "HGNC:28605" ; level 2 ; orig_coord_info "chr8,100649449,100649514,-" ; protein_id "ENSP00000312368.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNX31--YWHAZ^ENST00000311812.7" ; transcript_name "SNX31-201" ; transcript_support_level 2 ; transcript_type protein_coding
SNX31--YWHAZ HAVANA mRNA 3419 19749 . + . FI_gene_label "SNX31^ENSG00000174226.9" ; ID "SNX31--YWHAZ^ENST00000311812.7" ; Parent "SNX31--YWHAZ^SNX31^ENSG00000174226.9" ; ccdsid "CCDS6288.1" ; exon_id "ENSE00001265171.3" ; exon_number 1 ; gene_id "SNX31--YWHAZ^SNX31^ENSG00000174226.9" ; gene_name SNX31 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164725.5" ; havana_transcript "OTTHUMT00000379910.3" ; hgnc_id "HGNC:28605" ; level 2 ; orig_coord_info "chr8,100649449,100649514,-" ; protein_id "ENSP00000312368.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNX31--YWHAZ^ENST00000311812.7" ; transcript_name "SNX31-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SNX31--YWHAZ HAVANA gene 22797 36489 . + . FI_gene_label "YWHAZ^ENSG00000164924.18" ; ID "SNX31--YWHAZ^YWHAZ^ENSG00000164924.18" ; ccdsid "CCDS6290.1" ; exon_id "ENSE00003798443.1" ; exon_number 2 ; gene_id "SNX31--YWHAZ^YWHAZ^ENSG00000164924.18" ; gene_name YWHAZ ; gene_type protein_coding ; havana_gene "OTTHUMG00000134291.9" ; havana_transcript "OTTHUMT00000259018.1" ; hgnc_id "HGNC:12855" ; level 2 ; orig_coord_info "chr8,100948596,100948889,-" ; protein_id "ENSP00000309503.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SNX31--YWHAZ^ENST00000353245.7" ; transcript_name "YWHAZ-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNX31--YWHAZ HAVANA mRNA 22797 36489 . + . FI_gene_label "YWHAZ^ENSG00000164924.18" ; ID "SNX31--YWHAZ^ENST00000353245.7" ; Parent "SNX31--YWHAZ^YWHAZ^ENSG00000164924.18" ; ccdsid "CCDS6290.1" ; exon_id "ENSE00003798443.1" ; exon_number 2 ; gene_id "SNX31--YWHAZ^YWHAZ^ENSG00000164924.18" ; gene_name YWHAZ ; gene_type protein_coding ; havana_gene "OTTHUMG00000134291.9" ; havana_transcript "OTTHUMT00000259018.1" ; hgnc_id "HGNC:12855" ; level 2 ; orig_coord_info "chr8,100948596,100948889,-" ; protein_id "ENSP00000309503.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SNX31--YWHAZ^ENST00000353245.7" ; transcript_name "YWHAZ-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SRGAP2--CTXND2 ENSEMBL gene 3282 18721 . + . FI_gene_label "SRGAP2^ENSG00000266028.7" ; ID "SRGAP2--CTXND2^SRGAP2^ENSG00000266028.7" ; exon_id "ENSE00002267225.2" ; exon_number 2 ; gene_id "SRGAP2--CTXND2^SRGAP2^ENSG00000266028.7" ; gene_name SRGAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184381.5" ; hgnc_id "HGNC:19751" ; level 3 ; orig_coord_info "chr1,206384050,206384076,+" ; protein_id "ENSP00000397990.3" ; tag basic ; transcript_id "SRGAP2--CTXND2^ENST00000419187.6" ; transcript_name "SRGAP2-201" ; transcript_support_level 5 ; transcript_type protein_coding
SRGAP2--CTXND2 ENSEMBL mRNA 3282 18721 . + . FI_gene_label "SRGAP2^ENSG00000266028.7" ; ID "SRGAP2--CTXND2^ENST00000419187.6" ; Parent "SRGAP2--CTXND2^SRGAP2^ENSG00000266028.7" ; exon_id "ENSE00002267225.2" ; exon_number 2 ; gene_id "SRGAP2--CTXND2^SRGAP2^ENSG00000266028.7" ; gene_name SRGAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184381.5" ; hgnc_id "HGNC:19751" ; level 3 ; orig_coord_info "chr1,206384050,206384076,+" ; protein_id "ENSP00000397990.3" ; tag basic ; transcript_id "SRGAP2--CTXND2^ENST00000419187.6" ; transcript_name "SRGAP2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SRGAP2--CTXND2 HAVANA gene 42733 44961 . + . FI_gene_label "CTXND2^ENSG00000283324.1" ; ID "SRGAP2--CTXND2^CTXND2^ENSG00000283324.1" ; exon_id "ENSE00003793610.1" ; exon_number 2 ; gene_id "SRGAP2--CTXND2^CTXND2^ENSG00000283324.1" ; gene_name CTXND2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191721.1" ; havana_transcript "OTTHUMT00000489688.1" ; hgnc_id "HGNC:53440" ; level 2 ; orig_coord_info "chr1,150912315,150912479,+" ; protein_id "ENSP00000490418.1" ; tag RNA_Seq_supported_only basic appris_principal_1 ; transcript_id "SRGAP2--CTXND2^ENST00000636087.1" ; transcript_name "CTXND2-201" ; transcript_support_level 2 ; transcript_type protein_coding
SRGAP2--CTXND2 HAVANA mRNA 42733 44961 . + . FI_gene_label "CTXND2^ENSG00000283324.1" ; ID "SRGAP2--CTXND2^ENST00000636087.1" ; Parent "SRGAP2--CTXND2^CTXND2^ENSG00000283324.1" ; exon_id "ENSE00003793610.1" ; exon_number 2 ; gene_id "SRGAP2--CTXND2^CTXND2^ENSG00000283324.1" ; gene_name CTXND2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191721.1" ; havana_transcript "OTTHUMT00000489688.1" ; hgnc_id "HGNC:53440" ; level 2 ; orig_coord_info "chr1,150912315,150912479,+" ; protein_id "ENSP00000490418.1" ; tag RNA_Seq_supported_only basic appris_principal_1 ; transcript_id "SRGAP2--CTXND2^ENST00000636087.1" ; transcript_name "CTXND2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SRGAP2B--LSP1P5 HAVANA gene 1001 17112 . + . FI_gene_label "SRGAP2B^ENSG00000196369.11" ; ID "SRGAP2B--LSP1P5^SRGAP2B^ENSG00000196369.11" ; exon_id "ENSE00001848190.1" ; exon_number 2 ; gene_id "SRGAP2B--LSP1P5^SRGAP2B^ENSG00000196369.11" ; gene_name SRGAP2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000041442.8" ; havana_transcript "OTTHUMT00000099258.6" ; hgnc_id "HGNC:35237" ; level 2 ; orig_coord_info "chr1,145092835,145092901,-" ; protein_id "ENSP00000477776.1" ; tag basic appris_alternative_2 ; transcript_id "SRGAP2B--LSP1P5^ENST00000612199.4" ; transcript_name "SRGAP2B-204" ; transcript_support_level 1 ; transcript_type protein_coding
SRGAP2B--LSP1P5 HAVANA mRNA 1001 17112 . + . FI_gene_label "SRGAP2B^ENSG00000196369.11" ; ID "SRGAP2B--LSP1P5^ENST00000612199.4" ; Parent "SRGAP2B--LSP1P5^SRGAP2B^ENSG00000196369.11" ; exon_id "ENSE00001848190.1" ; exon_number 2 ; gene_id "SRGAP2B--LSP1P5^SRGAP2B^ENSG00000196369.11" ; gene_name SRGAP2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000041442.8" ; havana_transcript "OTTHUMT00000099258.6" ; hgnc_id "HGNC:35237" ; level 2 ; orig_coord_info "chr1,145092835,145092901,-" ; protein_id "ENSP00000477776.1" ; tag basic appris_alternative_2 ; transcript_id "SRGAP2B--LSP1P5^ENST00000612199.4" ; transcript_name "SRGAP2B-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SYF2--RSRP1 HAVANA gene 1001 9131 . + . FI_gene_label "SYF2^ENSG00000117614.10" ; ID "SYF2--RSRP1^SYF2^ENSG00000117614.10" ; ccdsid "CCDS259.1" ; exon_id "ENSE00001820893.2" ; exon_number 1 ; gene_id "SYF2--RSRP1^SYF2^ENSG00000117614.10" ; gene_name SYF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000043610.2" ; havana_transcript "OTTHUMT00000101962.2" ; hgnc_id "HGNC:19824" ; level 2 ; orig_coord_info "chr1,25232444,25232467,-" ; protein_id "ENSP00000236273.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SYF2--RSRP1^ENST00000236273.9" ; transcript_name "SYF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SYF2--RSRP1 HAVANA mRNA 1001 9131 . + . FI_gene_label "SYF2^ENSG00000117614.10" ; ID "SYF2--RSRP1^ENST00000236273.9" ; Parent "SYF2--RSRP1^SYF2^ENSG00000117614.10" ; ccdsid "CCDS259.1" ; exon_id "ENSE00001820893.2" ; exon_number 1 ; gene_id "SYF2--RSRP1^SYF2^ENSG00000117614.10" ; gene_name SYF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000043610.2" ; havana_transcript "OTTHUMT00000101962.2" ; hgnc_id "HGNC:19824" ; level 2 ; orig_coord_info "chr1,25232444,25232467,-" ; protein_id "ENSP00000236273.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SYF2--RSRP1^ENST00000236273.9" ; transcript_name "SYF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SYF2--RSRP1 HAVANA gene 22679 27884 . + . FI_gene_label "RSRP1^ENSG00000117616.18" ; ID "SYF2--RSRP1^RSRP1^ENSG00000117616.18" ; ccdsid "CCDS260.1" ; exon_id "ENSE00003613589.1" ; exon_number 2 ; gene_id "SYF2--RSRP1^RSRP1^ENSG00000117616.18" ; gene_name RSRP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000043611.7" ; havana_transcript "OTTHUMT00000101966.3" ; hgnc_id "HGNC:25234" ; level 2 ; orig_coord_info "chr1,25246444,25246963,-" ; protein_id "ENSP00000243189.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SYF2--RSRP1^ENST00000243189.12" ; transcript_name "RSRP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SYF2--RSRP1 HAVANA mRNA 22679 27884 . + . FI_gene_label "RSRP1^ENSG00000117616.18" ; ID "SYF2--RSRP1^ENST00000243189.12" ; Parent "SYF2--RSRP1^RSRP1^ENSG00000117616.18" ; ccdsid "CCDS260.1" ; exon_id "ENSE00003613589.1" ; exon_number 2 ; gene_id "SYF2--RSRP1^RSRP1^ENSG00000117616.18" ; gene_name RSRP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000043611.7" ; havana_transcript "OTTHUMT00000101966.3" ; hgnc_id "HGNC:25234" ; level 2 ; orig_coord_info "chr1,25246444,25246963,-" ; protein_id "ENSP00000243189.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SYF2--RSRP1^ENST00000243189.12" ; transcript_name "RSRP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TDP1--TTC7B HAVANA gene 30620 78132 . + . FI_gene_label "TTC7B^ENSG00000165914.15" ; ID "TDP1--TTC7B^TTC7B^ENSG00000165914.15" ; ccdsid "CCDS32140.1" ; exon_id "ENSE00002693320.2" ; exon_number 1 ; gene_id "TDP1--TTC7B^TTC7B^ENSG00000165914.15" ; gene_name TTC7B ; gene_type protein_coding ; havana_gene "OTTHUMG00000171047.5" ; havana_transcript "OTTHUMT00000411364.4" ; hgnc_id "HGNC:19858" ; level 2 ; orig_coord_info "chr14,90816175,90816295,-" ; protein_id "ENSP00000336127.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TDP1--TTC7B^ENST00000328459.11" ; transcript_name "TTC7B-201" ; transcript_support_level 1 ; transcript_type protein_coding
TDP1--TTC7B HAVANA mRNA 30620 78132 . + . FI_gene_label "TTC7B^ENSG00000165914.15" ; ID "TDP1--TTC7B^ENST00000328459.11" ; Parent "TDP1--TTC7B^TTC7B^ENSG00000165914.15" ; ccdsid "CCDS32140.1" ; exon_id "ENSE00002693320.2" ; exon_number 1 ; gene_id "TDP1--TTC7B^TTC7B^ENSG00000165914.15" ; gene_name TTC7B ; gene_type protein_coding ; havana_gene "OTTHUMG00000171047.5" ; havana_transcript "OTTHUMT00000411364.4" ; hgnc_id "HGNC:19858" ; level 2 ; orig_coord_info "chr14,90816175,90816295,-" ; protein_id "ENSP00000336127.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TDP1--TTC7B^ENST00000328459.11" ; transcript_name "TTC7B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TDP1--TTC7B HAVANA gene 1989 27570 . + . FI_gene_label "TDP1^ENSG00000042088.14" ; ID "TDP1--TTC7B^TDP1^ENSG00000042088.14" ; ccdsid "CCDS9888.1" ; exon_id "ENSE00003656623.1" ; exon_number 3 ; gene_id "TDP1--TTC7B^TDP1^ENSG00000042088.14" ; gene_name TDP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171016.4" ; havana_transcript "OTTHUMT00000411239.3" ; hgnc_id "HGNC:18884" ; level 2 ; orig_coord_info "chr14,89963115,89963673,+" ; protein_id "ENSP00000337353.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TDP1--TTC7B^ENST00000335725.9" ; transcript_name "TDP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TDP1--TTC7B HAVANA mRNA 1989 27570 . + . FI_gene_label "TDP1^ENSG00000042088.14" ; ID "TDP1--TTC7B^ENST00000335725.9" ; Parent "TDP1--TTC7B^TDP1^ENSG00000042088.14" ; ccdsid "CCDS9888.1" ; exon_id "ENSE00003656623.1" ; exon_number 3 ; gene_id "TDP1--TTC7B^TDP1^ENSG00000042088.14" ; gene_name TDP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171016.4" ; havana_transcript "OTTHUMT00000411239.3" ; hgnc_id "HGNC:18884" ; level 2 ; orig_coord_info "chr14,89963115,89963673,+" ; protein_id "ENSP00000337353.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TDP1--TTC7B^ENST00000335725.9" ; transcript_name "TDP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
THEM4--AC253572.1 HAVANA gene 1127 12999 . + . FI_gene_label "THEM4^ENSG00000159445.13" ; ID "THEM4--AC253572.1^THEM4^ENSG00000159445.13" ; ccdsid "CCDS1006.1" ; exon_id "ENSE00001870114.2" ; exon_number 1 ; gene_id "THEM4--AC253572.1^THEM4^ENSG00000159445.13" ; gene_name THEM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013049.3" ; havana_transcript "OTTHUMT00000036615.2" ; hgnc_id "HGNC:17947" ; level 2 ; orig_coord_info "chr1,151909360,151909458,-" ; protein_id "ENSP00000357804.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THEM4--AC253572.1^ENST00000368814.8" ; transcript_name "THEM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
THEM4--AC253572.1 HAVANA mRNA 1127 12999 . + . FI_gene_label "THEM4^ENSG00000159445.13" ; ID "THEM4--AC253572.1^ENST00000368814.8" ; Parent "THEM4--AC253572.1^THEM4^ENSG00000159445.13" ; ccdsid "CCDS1006.1" ; exon_id "ENSE00001870114.2" ; exon_number 1 ; gene_id "THEM4--AC253572.1^THEM4^ENSG00000159445.13" ; gene_name THEM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013049.3" ; havana_transcript "OTTHUMT00000036615.2" ; hgnc_id "HGNC:17947" ; level 2 ; orig_coord_info "chr1,151909360,151909458,-" ; protein_id "ENSP00000357804.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THEM4--AC253572.1^ENST00000368814.8" ; transcript_name "THEM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
THEM4--PPIAL4A HAVANA gene 1127 12999 . + . FI_gene_label "THEM4^ENSG00000159445.13" ; ID "THEM4--PPIAL4A^THEM4^ENSG00000159445.13" ; ccdsid "CCDS1006.1" ; exon_id "ENSE00001870114.2" ; exon_number 1 ; gene_id "THEM4--PPIAL4A^THEM4^ENSG00000159445.13" ; gene_name THEM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013049.3" ; havana_transcript "OTTHUMT00000036615.2" ; hgnc_id "HGNC:17947" ; level 2 ; orig_coord_info "chr1,151909360,151909458,-" ; protein_id "ENSP00000357804.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THEM4--PPIAL4A^ENST00000368814.8" ; transcript_name "THEM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
THEM4--PPIAL4A HAVANA mRNA 1127 12999 . + . FI_gene_label "THEM4^ENSG00000159445.13" ; ID "THEM4--PPIAL4A^ENST00000368814.8" ; Parent "THEM4--PPIAL4A^THEM4^ENSG00000159445.13" ; ccdsid "CCDS1006.1" ; exon_id "ENSE00001870114.2" ; exon_number 1 ; gene_id "THEM4--PPIAL4A^THEM4^ENSG00000159445.13" ; gene_name THEM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013049.3" ; havana_transcript "OTTHUMT00000036615.2" ; hgnc_id "HGNC:17947" ; level 2 ; orig_coord_info "chr1,151909360,151909458,-" ; protein_id "ENSP00000357804.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THEM4--PPIAL4A^ENST00000368814.8" ; transcript_name "THEM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
THEM4--PPIAL4A HAVANA gene 16000 16659 . + . FI_gene_label "PPIAL4A^ENSG00000263353.3" ; ID "THEM4--PPIAL4A^PPIAL4A^ENSG00000263353.3" ; ccdsid "CCDS76197.1" ; exon_id "ENSE00002715895.2" ; exon_number 1 ; gene_id "THEM4--PPIAL4A^PPIAL4A^ENSG00000263353.3" ; gene_name PPIAL4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000185015.2" ; havana_transcript "OTTHUMT00000469441.2" ; hgnc_id "HGNC:24369" ; level 2 ; orig_coord_info "chr1,120889821,120890312,+" ; protein_id "ENSP00000485206.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THEM4--PPIAL4A^ENST00000577856.2" ; transcript_name "PPIAL4A-201" ; transcript_support_level NA ; transcript_type protein_coding
THEM4--PPIAL4A HAVANA mRNA 16000 16659 . + . FI_gene_label "PPIAL4A^ENSG00000263353.3" ; ID "THEM4--PPIAL4A^ENST00000577856.2" ; Parent "THEM4--PPIAL4A^PPIAL4A^ENSG00000263353.3" ; ccdsid "CCDS76197.1" ; exon_id "ENSE00002715895.2" ; exon_number 1 ; gene_id "THEM4--PPIAL4A^PPIAL4A^ENSG00000263353.3" ; gene_name PPIAL4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000185015.2" ; havana_transcript "OTTHUMT00000469441.2" ; hgnc_id "HGNC:24369" ; level 2 ; orig_coord_info "chr1,120889821,120890312,+" ; protein_id "ENSP00000485206.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THEM4--PPIAL4A^ENST00000577856.2" ; transcript_name "PPIAL4A-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
THEM4--RNVU1-19 HAVANA gene 1127 12999 . + . FI_gene_label "THEM4^ENSG00000159445.13" ; ID "THEM4--RNVU1-19^THEM4^ENSG00000159445.13" ; ccdsid "CCDS1006.1" ; exon_id "ENSE00001870114.2" ; exon_number 1 ; gene_id "THEM4--RNVU1-19^THEM4^ENSG00000159445.13" ; gene_name THEM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013049.3" ; havana_transcript "OTTHUMT00000036615.2" ; hgnc_id "HGNC:17947" ; level 2 ; orig_coord_info "chr1,151909360,151909458,-" ; protein_id "ENSP00000357804.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THEM4--RNVU1-19^ENST00000368814.8" ; transcript_name "THEM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
THEM4--RNVU1-19 HAVANA mRNA 1127 12999 . + . FI_gene_label "THEM4^ENSG00000159445.13" ; ID "THEM4--RNVU1-19^ENST00000368814.8" ; Parent "THEM4--RNVU1-19^THEM4^ENSG00000159445.13" ; ccdsid "CCDS1006.1" ; exon_id "ENSE00001870114.2" ; exon_number 1 ; gene_id "THEM4--RNVU1-19^THEM4^ENSG00000159445.13" ; gene_name THEM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013049.3" ; havana_transcript "OTTHUMT00000036615.2" ; hgnc_id "HGNC:17947" ; level 2 ; orig_coord_info "chr1,151909360,151909458,-" ; protein_id "ENSP00000357804.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THEM4--RNVU1-19^ENST00000368814.8" ; transcript_name "THEM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TPTE--BAGE2 HAVANA gene 1023 23850 . + . FI_gene_label "TPTE^ENSG00000274391.5" ; ID "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; ccdsid "CCDS74773.1" ; exon_id "ENSE00003735534.1" ; exon_number 4 ; gene_id "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; gene_name TPTE ; gene_type protein_coding ; havana_gene "OTTHUMG00000074127.15" ; havana_transcript "OTTHUMT00000157414.2" ; hgnc_id "HGNC:12023" ; level 2 ; orig_coord_info "chr21,10538724,10538734,+" ; protein_id "ENSP00000482488.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "TPTE--BAGE2^ENST00000427445.6" ; transcript_name "TPTE-201" ; transcript_support_level 1 ; transcript_type protein_coding
TPTE--BAGE2 HAVANA mRNA 1023 23850 . + . FI_gene_label "TPTE^ENSG00000274391.5" ; ID "TPTE--BAGE2^ENST00000427445.6" ; Parent "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; ccdsid "CCDS74773.1" ; exon_id "ENSE00003735534.1" ; exon_number 4 ; gene_id "TPTE--BAGE2^TPTE^ENSG00000274391.5" ; gene_name TPTE ; gene_type protein_coding ; havana_gene "OTTHUMG00000074127.15" ; havana_transcript "OTTHUMT00000157414.2" ; hgnc_id "HGNC:12023" ; level 2 ; orig_coord_info "chr21,10538724,10538734,+" ; protein_id "ENSP00000482488.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "TPTE--BAGE2^ENST00000427445.6" ; transcript_name "TPTE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TUFT1--LCE4A ENSEMBL gene 1019 14596 . + . FI_gene_label "TUFT1^ENSG00000143367.16" ; ID "TUFT1--LCE4A^TUFT1^ENSG00000143367.16" ; exon_id "ENSE00002247703.2" ; exon_number 1 ; gene_id "TUFT1--LCE4A^TUFT1^ENSG00000143367.16" ; gene_name TUFT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012536.4" ; hgnc_id "HGNC:12422" ; level 3 ; orig_coord_info "chr1,151540367,151540426,+" ; protein_id "ENSP00000343781.4" ; tag basic appris_alternative_2 ; transcript_id "TUFT1--LCE4A^ENST00000353024.4" ; transcript_name "TUFT1-201" ; transcript_support_level 2 ; transcript_type protein_coding
TUFT1--LCE4A ENSEMBL mRNA 1019 14596 . + . FI_gene_label "TUFT1^ENSG00000143367.16" ; ID "TUFT1--LCE4A^ENST00000353024.4" ; Parent "TUFT1--LCE4A^TUFT1^ENSG00000143367.16" ; exon_id "ENSE00002247703.2" ; exon_number 1 ; gene_id "TUFT1--LCE4A^TUFT1^ENSG00000143367.16" ; gene_name TUFT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012536.4" ; hgnc_id "HGNC:12422" ; level 3 ; orig_coord_info "chr1,151540367,151540426,+" ; protein_id "ENSP00000343781.4" ; tag basic appris_alternative_2 ; transcript_id "TUFT1--LCE4A^ENST00000353024.4" ; transcript_name "TUFT1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TUFT1--LCE4A HAVANA gene 17604 18935 . + . FI_gene_label "LCE4A^ENSG00000187170.5" ; ID "TUFT1--LCE4A^LCE4A^ENSG00000187170.5" ; ccdsid "CCDS1022.1" ; exon_id "ENSE00001447942.1" ; exon_number 2 ; gene_id "TUFT1--LCE4A^LCE4A^ENSG00000187170.5" ; gene_name LCE4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014394.2" ; havana_transcript "OTTHUMT00000040048.2" ; hgnc_id "HGNC:16613" ; level 2 ; orig_coord_info "chr1,152709076,152709372,+" ; protein_id "ENSP00000357766.1" ; tag basic appris_principal_1 CCDS ; transcript_id "TUFT1--LCE4A^ENST00000368777.1" ; transcript_name "LCE4A-201" ; transcript_support_level 2 ; transcript_type protein_coding
TUFT1--LCE4A HAVANA mRNA 17604 18935 . + . FI_gene_label "LCE4A^ENSG00000187170.5" ; ID "TUFT1--LCE4A^ENST00000368777.1" ; Parent "TUFT1--LCE4A^LCE4A^ENSG00000187170.5" ; ccdsid "CCDS1022.1" ; exon_id "ENSE00001447942.1" ; exon_number 2 ; gene_id "TUFT1--LCE4A^LCE4A^ENSG00000187170.5" ; gene_name LCE4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014394.2" ; havana_transcript "OTTHUMT00000040048.2" ; hgnc_id "HGNC:16613" ; level 2 ; orig_coord_info "chr1,152709076,152709372,+" ; protein_id "ENSP00000357766.1" ; tag basic appris_principal_1 CCDS ; transcript_id "TUFT1--LCE4A^ENST00000368777.1" ; transcript_name "LCE4A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UMPS--AC116050.1 HAVANA gene 1020 14916 . + . FI_gene_label "UMPS^ENSG00000114491.14" ; ID "UMPS--AC116050.1^UMPS^ENSG00000114491.14" ; ccdsid "CCDS3029.1" ; exon_id "ENSE00003693247.1" ; exon_number 1 ; gene_id "UMPS--AC116050.1^UMPS^ENSG00000114491.14" ; gene_name UMPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000159431.5" ; havana_transcript "OTTHUMT00000355271.3" ; hgnc_id "HGNC:12563" ; level 2 ; orig_coord_info "chr3,124730472,124730627,+" ; protein_id "ENSP00000232607.2" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "UMPS--AC116050.1^ENST00000232607.7" ; transcript_name "UMPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
UMPS--AC116050.1 HAVANA mRNA 1020 14916 . + . FI_gene_label "UMPS^ENSG00000114491.14" ; ID "UMPS--AC116050.1^ENST00000232607.7" ; Parent "UMPS--AC116050.1^UMPS^ENSG00000114491.14" ; ccdsid "CCDS3029.1" ; exon_id "ENSE00003693247.1" ; exon_number 1 ; gene_id "UMPS--AC116050.1^UMPS^ENSG00000114491.14" ; gene_name UMPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000159431.5" ; havana_transcript "OTTHUMT00000355271.3" ; hgnc_id "HGNC:12563" ; level 2 ; orig_coord_info "chr3,124730472,124730627,+" ; protein_id "ENSP00000232607.2" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "UMPS--AC116050.1^ENST00000232607.7" ; transcript_name "UMPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UMPS--AC242852.2 HAVANA gene 1020 14916 . + . FI_gene_label "UMPS^ENSG00000114491.14" ; ID "UMPS--AC242852.2^UMPS^ENSG00000114491.14" ; ccdsid "CCDS3029.1" ; exon_id "ENSE00003693247.1" ; exon_number 1 ; gene_id "UMPS--AC242852.2^UMPS^ENSG00000114491.14" ; gene_name UMPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000159431.5" ; havana_transcript "OTTHUMT00000355271.3" ; hgnc_id "HGNC:12563" ; level 2 ; orig_coord_info "chr3,124730472,124730627,+" ; protein_id "ENSP00000232607.2" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "UMPS--AC242852.2^ENST00000232607.7" ; transcript_name "UMPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
UMPS--AC242852.2 HAVANA mRNA 1020 14916 . + . FI_gene_label "UMPS^ENSG00000114491.14" ; ID "UMPS--AC242852.2^ENST00000232607.7" ; Parent "UMPS--AC242852.2^UMPS^ENSG00000114491.14" ; ccdsid "CCDS3029.1" ; exon_id "ENSE00003693247.1" ; exon_number 1 ; gene_id "UMPS--AC242852.2^UMPS^ENSG00000114491.14" ; gene_name UMPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000159431.5" ; havana_transcript "OTTHUMT00000355271.3" ; hgnc_id "HGNC:12563" ; level 2 ; orig_coord_info "chr3,124730472,124730627,+" ; protein_id "ENSP00000232607.2" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "UMPS--AC242852.2^ENST00000232607.7" ; transcript_name "UMPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UMPS--HYDIN HAVANA gene 1020 14916 . + . FI_gene_label "UMPS^ENSG00000114491.14" ; ID "UMPS--HYDIN^UMPS^ENSG00000114491.14" ; ccdsid "CCDS3029.1" ; exon_id "ENSE00003693247.1" ; exon_number 1 ; gene_id "UMPS--HYDIN^UMPS^ENSG00000114491.14" ; gene_name UMPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000159431.5" ; havana_transcript "OTTHUMT00000355271.3" ; hgnc_id "HGNC:12563" ; level 2 ; orig_coord_info "chr3,124730472,124730627,+" ; protein_id "ENSP00000232607.2" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "UMPS--HYDIN^ENST00000232607.7" ; transcript_name "UMPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
UMPS--HYDIN HAVANA mRNA 1020 14916 . + . FI_gene_label "UMPS^ENSG00000114491.14" ; ID "UMPS--HYDIN^ENST00000232607.7" ; Parent "UMPS--HYDIN^UMPS^ENSG00000114491.14" ; ccdsid "CCDS3029.1" ; exon_id "ENSE00003693247.1" ; exon_number 1 ; gene_id "UMPS--HYDIN^UMPS^ENSG00000114491.14" ; gene_name UMPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000159431.5" ; havana_transcript "OTTHUMT00000355271.3" ; hgnc_id "HGNC:12563" ; level 2 ; orig_coord_info "chr3,124730472,124730627,+" ; protein_id "ENSP00000232607.2" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "UMPS--HYDIN^ENST00000232607.7" ; transcript_name "UMPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UMPS--HYDIN HAVANA gene 17938 40954 . + . FI_gene_label "HYDIN^ENSG00000157423.18" ; ID "UMPS--HYDIN^HYDIN^ENSG00000157423.18" ; exon_id "ENSE00002238007.1" ; exon_number 1 ; gene_id "UMPS--HYDIN^HYDIN^ENSG00000157423.18" ; gene_name HYDIN ; gene_type protein_coding ; havana_gene "OTTHUMG00000137584.14" ; havana_transcript "OTTHUMT00000398682.2" ; hgnc_id "HGNC:19368" ; level 2 ; orig_coord_info "chr16,71230660,71230687,-" ; protein_id "ENSP00000288168.10" ; tag basic ; transcript_id "UMPS--HYDIN^ENST00000288168.14" ; transcript_name "HYDIN-201" ; transcript_support_level 1 ; transcript_type protein_coding
UMPS--HYDIN HAVANA mRNA 17938 40954 . + . FI_gene_label "HYDIN^ENSG00000157423.18" ; ID "UMPS--HYDIN^ENST00000288168.14" ; Parent "UMPS--HYDIN^HYDIN^ENSG00000157423.18" ; exon_id "ENSE00002238007.1" ; exon_number 1 ; gene_id "UMPS--HYDIN^HYDIN^ENSG00000157423.18" ; gene_name HYDIN ; gene_type protein_coding ; havana_gene "OTTHUMG00000137584.14" ; havana_transcript "OTTHUMT00000398682.2" ; hgnc_id "HGNC:19368" ; level 2 ; orig_coord_info "chr16,71230660,71230687,-" ; protein_id "ENSP00000288168.10" ; tag basic ; transcript_id "UMPS--HYDIN^ENST00000288168.14" ; transcript_name "HYDIN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP31--COG7 HAVANA gene 1001 25878 . + . FI_gene_label "USP31^ENSG00000103404.14" ; ID "USP31--COG7^USP31^ENSG00000103404.14" ; ccdsid "CCDS10607.1" ; exon_id "ENSE00001383579.1" ; exon_number 1 ; gene_id "USP31--COG7^USP31^ENSG00000103404.14" ; gene_name USP31 ; gene_type protein_coding ; havana_gene "OTTHUMG00000094793.6" ; havana_transcript "OTTHUMT00000211607.1" ; hgnc_id "HGNC:20060" ; level 2 ; orig_coord_info "chr16,23148638,23149270,-" ; protein_id "ENSP00000219689.7" ; tag basic appris_principal_1 CCDS ; transcript_id "USP31--COG7^ENST00000219689.11" ; transcript_name "USP31-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP31--COG7 HAVANA mRNA 1001 25878 . + . FI_gene_label "USP31^ENSG00000103404.14" ; ID "USP31--COG7^ENST00000219689.11" ; Parent "USP31--COG7^USP31^ENSG00000103404.14" ; ccdsid "CCDS10607.1" ; exon_id "ENSE00001383579.1" ; exon_number 1 ; gene_id "USP31--COG7^USP31^ENSG00000103404.14" ; gene_name USP31 ; gene_type protein_coding ; havana_gene "OTTHUMG00000094793.6" ; havana_transcript "OTTHUMT00000211607.1" ; hgnc_id "HGNC:20060" ; level 2 ; orig_coord_info "chr16,23148638,23149270,-" ; protein_id "ENSP00000219689.7" ; tag basic appris_principal_1 CCDS ; transcript_id "USP31--COG7^ENST00000219689.11" ; transcript_name "USP31-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP31--COG7 HAVANA gene 28879 50338 . + . FI_gene_label "COG7^ENSG00000168434.13" ; ID "USP31--COG7^COG7^ENSG00000168434.13" ; ccdsid "CCDS10610.1" ; exon_id "ENSE00001310303.7" ; exon_number 1 ; gene_id "USP31--COG7^COG7^ENSG00000168434.13" ; gene_name COG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000094807.4" ; havana_transcript "OTTHUMT00000211625.2" ; hgnc_id "HGNC:18622" ; level 2 ; orig_coord_info "chr16,23452826,23452994,-" ; protein_id "ENSP00000305442.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP31--COG7^ENST00000307149.10" ; transcript_name "COG7-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP31--COG7 HAVANA mRNA 28879 50338 . + . FI_gene_label "COG7^ENSG00000168434.13" ; ID "USP31--COG7^ENST00000307149.10" ; Parent "USP31--COG7^COG7^ENSG00000168434.13" ; ccdsid "CCDS10610.1" ; exon_id "ENSE00001310303.7" ; exon_number 1 ; gene_id "USP31--COG7^COG7^ENSG00000168434.13" ; gene_name COG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000094807.4" ; havana_transcript "OTTHUMT00000211625.2" ; hgnc_id "HGNC:18622" ; level 2 ; orig_coord_info "chr16,23452826,23452994,-" ; protein_id "ENSP00000305442.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP31--COG7^ENST00000307149.10" ; transcript_name "COG7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
XRN1--LINC02026 HAVANA gene 1001 47177 . + . FI_gene_label "XRN1^ENSG00000114127.11" ; ID "XRN1--LINC02026^XRN1^ENSG00000114127.11" ; ccdsid "CCDS3123.1" ; exon_id "ENSE00001876911.1" ; exon_number 1 ; gene_id "XRN1--LINC02026^XRN1^ENSG00000114127.11" ; gene_name XRN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159251.5" ; havana_transcript "OTTHUMT00000354087.2" ; hgnc_id "HGNC:30654" ; level 2 ; orig_coord_info "chr3,142447870,142447944,-" ; protein_id "ENSP00000264951.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "XRN1--LINC02026^ENST00000264951.8" ; transcript_name "XRN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
XRN1--LINC02026 HAVANA mRNA 1001 47177 . + . FI_gene_label "XRN1^ENSG00000114127.11" ; ID "XRN1--LINC02026^ENST00000264951.8" ; Parent "XRN1--LINC02026^XRN1^ENSG00000114127.11" ; ccdsid "CCDS3123.1" ; exon_id "ENSE00001876911.1" ; exon_number 1 ; gene_id "XRN1--LINC02026^XRN1^ENSG00000114127.11" ; gene_name XRN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159251.5" ; havana_transcript "OTTHUMT00000354087.2" ; hgnc_id "HGNC:30654" ; level 2 ; orig_coord_info "chr3,142447870,142447944,-" ; protein_id "ENSP00000264951.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "XRN1--LINC02026^ENST00000264951.8" ; transcript_name "XRN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
XRN1--LINC02038 HAVANA gene 1001 47177 . + . FI_gene_label "XRN1^ENSG00000114127.11" ; ID "XRN1--LINC02038^XRN1^ENSG00000114127.11" ; ccdsid "CCDS3123.1" ; exon_id "ENSE00001876911.1" ; exon_number 1 ; gene_id "XRN1--LINC02038^XRN1^ENSG00000114127.11" ; gene_name XRN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159251.5" ; havana_transcript "OTTHUMT00000354087.2" ; hgnc_id "HGNC:30654" ; level 2 ; orig_coord_info "chr3,142447870,142447944,-" ; protein_id "ENSP00000264951.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "XRN1--LINC02038^ENST00000264951.8" ; transcript_name "XRN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
XRN1--LINC02038 HAVANA mRNA 1001 47177 . + . FI_gene_label "XRN1^ENSG00000114127.11" ; ID "XRN1--LINC02038^ENST00000264951.8" ; Parent "XRN1--LINC02038^XRN1^ENSG00000114127.11" ; ccdsid "CCDS3123.1" ; exon_id "ENSE00001876911.1" ; exon_number 1 ; gene_id "XRN1--LINC02038^XRN1^ENSG00000114127.11" ; gene_name XRN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159251.5" ; havana_transcript "OTTHUMT00000354087.2" ; hgnc_id "HGNC:30654" ; level 2 ; orig_coord_info "chr3,142447870,142447944,-" ; protein_id "ENSP00000264951.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "XRN1--LINC02038^ENST00000264951.8" ; transcript_name "XRN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZMPSTE24--RLF HAVANA gene 1196 16801 . + . FI_gene_label "ZMPSTE24^ENSG00000084073.10" ; ID "ZMPSTE24--RLF^ZMPSTE24^ENSG00000084073.10" ; ccdsid "CCDS449.1" ; exon_id "ENSE00001458591.4" ; exon_number 1 ; gene_id "ZMPSTE24--RLF^ZMPSTE24^ENSG00000084073.10" ; gene_name ZMPSTE24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000005762.3" ; havana_transcript "OTTHUMT00000015766.2" ; hgnc_id "HGNC:12877" ; level 2 ; orig_coord_info "chr1,40258272,40258394,+" ; protein_id "ENSP00000361845.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZMPSTE24--RLF^ENST00000372759.4" ; transcript_name "ZMPSTE24-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZMPSTE24--RLF HAVANA mRNA 1196 16801 . + . FI_gene_label "ZMPSTE24^ENSG00000084073.10" ; ID "ZMPSTE24--RLF^ENST00000372759.4" ; Parent "ZMPSTE24--RLF^ZMPSTE24^ENSG00000084073.10" ; ccdsid "CCDS449.1" ; exon_id "ENSE00001458591.4" ; exon_number 1 ; gene_id "ZMPSTE24--RLF^ZMPSTE24^ENSG00000084073.10" ; gene_name ZMPSTE24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000005762.3" ; havana_transcript "OTTHUMT00000015766.2" ; hgnc_id "HGNC:12877" ; level 2 ; orig_coord_info "chr1,40258272,40258394,+" ; protein_id "ENSP00000361845.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZMPSTE24--RLF^ENST00000372759.4" ; transcript_name "ZMPSTE24-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZMPSTE24--RLF HAVANA gene 19802 33033 . + . FI_gene_label "RLF^ENSG00000117000.9" ; ID "ZMPSTE24--RLF^RLF^ENSG00000117000.9" ; ccdsid "CCDS448.1" ; exon_id "ENSE00001458617.5" ; exon_number 1 ; gene_id "ZMPSTE24--RLF^RLF^ENSG00000117000.9" ; gene_name RLF ; gene_type protein_coding ; havana_gene "OTTHUMG00000005763.2" ; havana_transcript "OTTHUMT00000015767.2" ; hgnc_id "HGNC:10025" ; level 2 ; orig_coord_info "chr1,40161400,40161636,+" ; protein_id "ENSP00000361857.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZMPSTE24--RLF^ENST00000372771.5" ; transcript_name "RLF-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZMPSTE24--RLF HAVANA mRNA 19802 33033 . + . FI_gene_label "RLF^ENSG00000117000.9" ; ID "ZMPSTE24--RLF^ENST00000372771.5" ; Parent "ZMPSTE24--RLF^RLF^ENSG00000117000.9" ; ccdsid "CCDS448.1" ; exon_id "ENSE00001458617.5" ; exon_number 1 ; gene_id "ZMPSTE24--RLF^RLF^ENSG00000117000.9" ; gene_name RLF ; gene_type protein_coding ; havana_gene "OTTHUMG00000005763.2" ; havana_transcript "OTTHUMT00000015767.2" ; hgnc_id "HGNC:10025" ; level 2 ; orig_coord_info "chr1,40161400,40161636,+" ; protein_id "ENSP00000361857.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZMPSTE24--RLF^ENST00000372771.5" ; transcript_name "RLF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF148--LINC02799 HAVANA gene 1001 23163 . + . FI_gene_label "ZNF148^ENSG00000163848.20" ; ID "ZNF148--LINC02799^ZNF148^ENSG00000163848.20" ; ccdsid "CCDS3031.1" ; exon_id "ENSE00001270515.2" ; exon_number 4 ; gene_id "ZNF148--LINC02799^ZNF148^ENSG00000163848.20" ; gene_name ZNF148 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159448.5" ; havana_transcript "OTTHUMT00000355452.4" ; hgnc_id "HGNC:12933" ; level 2 ; orig_coord_info "chr3,125313308,125313640,-" ; protein_id "ENSP00000353863.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF148--LINC02799^ENST00000360647.9" ; transcript_name "ZNF148-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF148--LINC02799 HAVANA mRNA 1001 23163 . + . FI_gene_label "ZNF148^ENSG00000163848.20" ; ID "ZNF148--LINC02799^ENST00000360647.9" ; Parent "ZNF148--LINC02799^ZNF148^ENSG00000163848.20" ; ccdsid "CCDS3031.1" ; exon_id "ENSE00001270515.2" ; exon_number 4 ; gene_id "ZNF148--LINC02799^ZNF148^ENSG00000163848.20" ; gene_name ZNF148 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159448.5" ; havana_transcript "OTTHUMT00000355452.4" ; hgnc_id "HGNC:12933" ; level 2 ; orig_coord_info "chr3,125313308,125313640,-" ; protein_id "ENSP00000353863.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF148--LINC02799^ENST00000360647.9" ; transcript_name "ZNF148-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF687--CDC42SE1 HAVANA gene 1695 9476 . + . FI_gene_label "ZNF687^ENSG00000143373.18" ; ID "ZNF687--CDC42SE1^ZNF687^ENSG00000143373.18" ; ccdsid "CCDS992.1" ; exon_id "ENSE00001350923.1" ; exon_number 3 ; gene_id "ZNF687--CDC42SE1^ZNF687^ENSG00000143373.18" ; gene_name ZNF687 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012347.13" ; havana_transcript "OTTHUMT00000034398.2" ; hgnc_id "HGNC:29277" ; level 2 ; orig_coord_info "chr1,151286292,151288406,+" ; protein_id "ENSP00000319829.5" ; tag mRNA_start_NF basic appris_principal_1 CCDS ; transcript_id "ZNF687--CDC42SE1^ENST00000324048.9" ; transcript_name "ZNF687-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF687--CDC42SE1 HAVANA mRNA 1695 9476 . + . FI_gene_label "ZNF687^ENSG00000143373.18" ; ID "ZNF687--CDC42SE1^ENST00000324048.9" ; Parent "ZNF687--CDC42SE1^ZNF687^ENSG00000143373.18" ; ccdsid "CCDS992.1" ; exon_id "ENSE00001350923.1" ; exon_number 3 ; gene_id "ZNF687--CDC42SE1^ZNF687^ENSG00000143373.18" ; gene_name ZNF687 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012347.13" ; havana_transcript "OTTHUMT00000034398.2" ; hgnc_id "HGNC:29277" ; level 2 ; orig_coord_info "chr1,151286292,151288406,+" ; protein_id "ENSP00000319829.5" ; tag mRNA_start_NF basic appris_principal_1 CCDS ; transcript_id "ZNF687--CDC42SE1^ENST00000324048.9" ; transcript_name "ZNF687-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF687--CDC42SE1 HAVANA gene 16212 23157 . + . FI_gene_label "CDC42SE1^ENSG00000197622.13" ; ID "ZNF687--CDC42SE1^CDC42SE1^ENSG00000197622.13" ; ccdsid "CCDS981.1" ; exon_id "ENSE00003519252.1" ; exon_number 2 ; gene_id "ZNF687--CDC42SE1^CDC42SE1^ENSG00000197622.13" ; gene_name CDC42SE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035158.4" ; havana_transcript "OTTHUMT00000504481.2" ; hgnc_id "HGNC:17719" ; level 2 ; orig_coord_info "chr1,151055677,151055730,-" ; protein_id "ENSP00000349773.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF687--CDC42SE1^ENST00000357235.6" ; transcript_name "CDC42SE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF687--CDC42SE1 HAVANA mRNA 16212 23157 . + . FI_gene_label "CDC42SE1^ENSG00000197622.13" ; ID "ZNF687--CDC42SE1^ENST00000357235.6" ; Parent "ZNF687--CDC42SE1^CDC42SE1^ENSG00000197622.13" ; ccdsid "CCDS981.1" ; exon_id "ENSE00003519252.1" ; exon_number 2 ; gene_id "ZNF687--CDC42SE1^CDC42SE1^ENSG00000197622.13" ; gene_name CDC42SE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035158.4" ; havana_transcript "OTTHUMT00000504481.2" ; hgnc_id "HGNC:17719" ; level 2 ; orig_coord_info "chr1,151055677,151055730,-" ; protein_id "ENSP00000349773.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF687--CDC42SE1^ENST00000357235.6" ; transcript_name "CDC42SE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF816--AC005597.1 HAVANA gene 1041 5456 . + . FI_gene_label "ZNF816^ENSG00000180257.14" ; ID "ZNF816--AC005597.1^ZNF816^ENSG00000180257.14" ; exon_id "ENSE00003543290.1" ; exon_number 2 ; gene_id "ZNF816--AC005597.1^ZNF816^ENSG00000180257.14" ; gene_name ZNF816 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167761.3" ; havana_transcript "OTTHUMT00000396137.2" ; hgnc_id "HGNC:26995" ; level 2 ; orig_coord_info "chr19,52956027,52956089,-" ; protein_id "ENSP00000472475.1" ; tag basic ; transcript_id "ZNF816--AC005597.1^ENST00000270457.8" ; transcript_name "ZNF816-201" ; transcript_support_level 3 ; transcript_type protein_coding
ZNF816--AC005597.1 HAVANA mRNA 1041 5456 . + . FI_gene_label "ZNF816^ENSG00000180257.14" ; ID "ZNF816--AC005597.1^ENST00000270457.8" ; Parent "ZNF816--AC005597.1^ZNF816^ENSG00000180257.14" ; exon_id "ENSE00003543290.1" ; exon_number 2 ; gene_id "ZNF816--AC005597.1^ZNF816^ENSG00000180257.14" ; gene_name ZNF816 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167761.3" ; havana_transcript "OTTHUMT00000396137.2" ; hgnc_id "HGNC:26995" ; level 2 ; orig_coord_info "chr19,52956027,52956089,-" ; protein_id "ENSP00000472475.1" ; tag basic ; transcript_id "ZNF816--AC005597.1^ENST00000270457.8" ; transcript_name "ZNF816-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
ZNF816--AC008507.5 HAVANA gene 1041 5456 . + . FI_gene_label "ZNF816^ENSG00000180257.14" ; ID "ZNF816--AC008507.5^ZNF816^ENSG00000180257.14" ; exon_id "ENSE00003543290.1" ; exon_number 2 ; gene_id "ZNF816--AC008507.5^ZNF816^ENSG00000180257.14" ; gene_name ZNF816 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167761.3" ; havana_transcript "OTTHUMT00000396137.2" ; hgnc_id "HGNC:26995" ; level 2 ; orig_coord_info "chr19,52956027,52956089,-" ; protein_id "ENSP00000472475.1" ; tag basic ; transcript_id "ZNF816--AC008507.5^ENST00000270457.8" ; transcript_name "ZNF816-201" ; transcript_support_level 3 ; transcript_type protein_coding
ZNF816--AC008507.5 HAVANA mRNA 1041 5456 . + . FI_gene_label "ZNF816^ENSG00000180257.14" ; ID "ZNF816--AC008507.5^ENST00000270457.8" ; Parent "ZNF816--AC008507.5^ZNF816^ENSG00000180257.14" ; exon_id "ENSE00003543290.1" ; exon_number 2 ; gene_id "ZNF816--AC008507.5^ZNF816^ENSG00000180257.14" ; gene_name ZNF816 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167761.3" ; havana_transcript "OTTHUMT00000396137.2" ; hgnc_id "HGNC:26995" ; level 2 ; orig_coord_info "chr19,52956027,52956089,-" ; protein_id "ENSP00000472475.1" ; tag basic ; transcript_id "ZNF816--AC008507.5^ENST00000270457.8" ; transcript_name "ZNF816-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
AC009315.1--GBP1P1 HAVANA gene 11644 18691 . + . FI_gene_label "GBP1P1^ENSG00000225492.6" ; ID "AC009315.1--GBP1P1^GBP1P1^ENSG00000225492.6" ; exon_id "ENSE00001731546.1" ; exon_number 1 ; gene_id "AC009315.1--GBP1P1^GBP1P1^ENSG00000225492.6" ; gene_name GBP1P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000010128.2" ; havana_transcript "OTTHUMT00000028007.1" ; hgnc_id "HGNC:39561" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,89410319,89410508,+" ; tag basic ; transcript_id "AC009315.1--GBP1P1^ENST00000394662.2" ; transcript_name "GBP1P1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AC009315.1--GBP1P1 HAVANA RNA 11644 18691 . + . FI_gene_label "GBP1P1^ENSG00000225492.6" ; ID "AC009315.1--GBP1P1^ENST00000394662.2" ; Parent "AC009315.1--GBP1P1^GBP1P1^ENSG00000225492.6" ; exon_id "ENSE00001731546.1" ; exon_number 1 ; gene_id "AC009315.1--GBP1P1^GBP1P1^ENSG00000225492.6" ; gene_name GBP1P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000010128.2" ; havana_transcript "OTTHUMT00000028007.1" ; hgnc_id "HGNC:39561" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,89410319,89410508,+" ; tag basic ; transcript_id "AC009315.1--GBP1P1^ENST00000394662.2" ; transcript_name "GBP1P1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC009315.1--GBP1P1 HAVANA gene 1001 7544 . + . FI_gene_label "AC009315.1^ENSG00000286797.1" ; ID "AC009315.1--GBP1P1^AC009315.1^ENSG00000286797.1" ; exon_id "ENSE00003876496.1" ; exon_number 1 ; gene_id "AC009315.1--GBP1P1^AC009315.1^ENSG00000286797.1" ; gene_name "AC009315.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195848.1" ; havana_transcript "OTTHUMT00000529037.1" ; level 2 ; orig_coord_info "chr2,185425063,185425507,+" ; tag TAGENE ; transcript_id "AC009315.1--GBP1P1^ENST00000655441.1" ; transcript_name "AC009315.1-201" ; transcript_type lncRNA
AC009315.1--GBP1P1 HAVANA RNA 1001 7544 . + . FI_gene_label "AC009315.1^ENSG00000286797.1" ; ID "AC009315.1--GBP1P1^ENST00000655441.1" ; Parent "AC009315.1--GBP1P1^AC009315.1^ENSG00000286797.1" ; exon_id "ENSE00003876496.1" ; exon_number 1 ; gene_id "AC009315.1--GBP1P1^AC009315.1^ENSG00000286797.1" ; gene_name "AC009315.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195848.1" ; havana_transcript "OTTHUMT00000529037.1" ; level 2 ; orig_coord_info "chr2,185425063,185425507,+" ; tag TAGENE ; transcript_id "AC009315.1--GBP1P1^ENST00000655441.1" ; transcript_name "AC009315.1-201" ; transcript_type lncRNA
L1 and L2 created:
AC012313.1--FRY ENSEMBL gene 4123 4765 . + . FI_gene_label "AC012313.1^ENSG00000232098.3" ; ID "AC012313.1--FRY^AC012313.1^ENSG00000232098.3" ; exon_id "ENSE00001754762.2" ; exon_number 1 ; gene_id "AC012313.1--FRY^AC012313.1^ENSG00000232098.3" ; gene_name "AC012313.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000183534.1" ; level 3 ; orig_coord_info "chr19,58405007,58405362,-" ; tag basic ; transcript_id "AC012313.1--FRY^ENST00000444227.2" ; transcript_name "AC012313.1-204" ; transcript_support_level 1 ; transcript_type lncRNA
AC012313.1--FRY ENSEMBL RNA 4123 4765 . + . FI_gene_label "AC012313.1^ENSG00000232098.3" ; ID "AC012313.1--FRY^ENST00000444227.2" ; Parent "AC012313.1--FRY^AC012313.1^ENSG00000232098.3" ; exon_id "ENSE00001754762.2" ; exon_number 1 ; gene_id "AC012313.1--FRY^AC012313.1^ENSG00000232098.3" ; gene_name "AC012313.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000183534.1" ; level 3 ; orig_coord_info "chr19,58405007,58405362,-" ; tag basic ; transcript_id "AC012313.1--FRY^ENST00000444227.2" ; transcript_name "AC012313.1-204" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AC025575.2--PTPRR HAVANA gene 1001 3565 . + . FI_gene_label "AC025575.2^ENSG00000258053.1" ; ID "AC025575.2--PTPRR^AC025575.2^ENSG00000258053.1" ; exon_id "ENSE00002360110.1" ; exon_number 1 ; gene_id "AC025575.2--PTPRR^AC025575.2^ENSG00000258053.1" ; gene_name "AC025575.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169541.1" ; havana_transcript "OTTHUMT00000404736.1" ; level 2 ; orig_coord_info "chr12,71118070,71118247,-" ; tag dotter_confirmed basic ; transcript_id "AC025575.2--PTPRR^ENST00000549357.1" ; transcript_name "AC025575.2-201" ; transcript_support_level 1 ; transcript_type lncRNA
AC025575.2--PTPRR HAVANA RNA 1001 3565 . + . FI_gene_label "AC025575.2^ENSG00000258053.1" ; ID "AC025575.2--PTPRR^ENST00000549357.1" ; Parent "AC025575.2--PTPRR^AC025575.2^ENSG00000258053.1" ; exon_id "ENSE00002360110.1" ; exon_number 1 ; gene_id "AC025575.2--PTPRR^AC025575.2^ENSG00000258053.1" ; gene_name "AC025575.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169541.1" ; havana_transcript "OTTHUMT00000404736.1" ; level 2 ; orig_coord_info "chr12,71118070,71118247,-" ; tag dotter_confirmed basic ; transcript_id "AC025575.2--PTPRR^ENST00000549357.1" ; transcript_name "AC025575.2-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
AC060780.1--ANKS1A HAVANA gene 1635 10841 . + . FI_gene_label "AC060780.1^ENSG00000267002.4" ; ID "AC060780.1--ANKS1A^AC060780.1^ENSG00000267002.4" ; exon_id "ENSE00002943744.1" ; exon_number 1 ; gene_id "AC060780.1--ANKS1A^AC060780.1^ENSG00000267002.4" ; gene_name "AC060780.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180875.4" ; havana_transcript "OTTHUMT00000453455.3" ; level 2 ; orig_coord_info "chr17,43170126,43170403,-" ; tag 3_standard_supported_extension ; transcript_id "AC060780.1--ANKS1A^ENST00000590740.2" ; transcript_name "AC060780.1-203" ; transcript_support_level 1 ; transcript_type lncRNA
AC060780.1--ANKS1A HAVANA RNA 1635 10841 . + . FI_gene_label "AC060780.1^ENSG00000267002.4" ; ID "AC060780.1--ANKS1A^ENST00000590740.2" ; Parent "AC060780.1--ANKS1A^AC060780.1^ENSG00000267002.4" ; exon_id "ENSE00002943744.1" ; exon_number 1 ; gene_id "AC060780.1--ANKS1A^AC060780.1^ENSG00000267002.4" ; gene_name "AC060780.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180875.4" ; havana_transcript "OTTHUMT00000453455.3" ; level 2 ; orig_coord_info "chr17,43170126,43170403,-" ; tag 3_standard_supported_extension ; transcript_id "AC060780.1--ANKS1A^ENST00000590740.2" ; transcript_name "AC060780.1-203" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
AC068630.1--HORMAD1 HAVANA gene 1001 2695 . + . FI_gene_label "AC068630.1^ENSG00000287977.1" ; ID "AC068630.1--HORMAD1^AC068630.1^ENSG00000287977.1" ; exon_id "ENSE00003864194.1" ; exon_number 1 ; gene_id "AC068630.1--HORMAD1^AC068630.1^ENSG00000287977.1" ; gene_name "AC068630.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000193824.1" ; havana_transcript "OTTHUMT00000505104.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr3,122172405,122174099,-" ; tag basic ; transcript_id "AC068630.1--HORMAD1^ENST00000657124.1" ; transcript_name "AC068630.1-201" ; transcript_type processed_pseudogene
AC068630.1--HORMAD1 HAVANA RNA 1001 2695 . + . FI_gene_label "AC068630.1^ENSG00000287977.1" ; ID "AC068630.1--HORMAD1^ENST00000657124.1" ; Parent "AC068630.1--HORMAD1^AC068630.1^ENSG00000287977.1" ; exon_id "ENSE00003864194.1" ; exon_number 1 ; gene_id "AC068630.1--HORMAD1^AC068630.1^ENSG00000287977.1" ; gene_name "AC068630.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000193824.1" ; havana_transcript "OTTHUMT00000505104.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr3,122172405,122174099,-" ; tag basic ; transcript_id "AC068630.1--HORMAD1^ENST00000657124.1" ; transcript_name "AC068630.1-201" ; transcript_type processed_pseudogene
L1 and L2 created:
AC090735.1--PRKCA HAVANA gene 1001 2591 . + . FI_gene_label "AC090735.1^ENSG00000253784.1" ; ID "AC090735.1--PRKCA^AC090735.1^ENSG00000253784.1" ; exon_id "ENSE00002118654.1" ; exon_number 1 ; gene_id "AC090735.1--PRKCA^AC090735.1^ENSG00000253784.1" ; gene_name "AC090735.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164520.1" ; havana_transcript "OTTHUMT00000379091.1" ; level 2 ; orig_coord_info "chr8,72881699,72881740,-" ; tag basic ; transcript_id "AC090735.1--PRKCA^ENST00000523881.1" ; transcript_name "AC090735.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
AC090735.1--PRKCA HAVANA RNA 1001 2591 . + . FI_gene_label "AC090735.1^ENSG00000253784.1" ; ID "AC090735.1--PRKCA^ENST00000523881.1" ; Parent "AC090735.1--PRKCA^AC090735.1^ENSG00000253784.1" ; exon_id "ENSE00002118654.1" ; exon_number 1 ; gene_id "AC090735.1--PRKCA^AC090735.1^ENSG00000253784.1" ; gene_name "AC090735.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164520.1" ; havana_transcript "OTTHUMT00000379091.1" ; level 2 ; orig_coord_info "chr8,72881699,72881740,-" ; tag basic ; transcript_id "AC090735.1--PRKCA^ENST00000523881.1" ; transcript_name "AC090735.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC106707.1--IQCJ HAVANA gene 1001 7229 . + . FI_gene_label "AC106707.1^ENSG00000243150.6" ; ID "AC106707.1--IQCJ^AC106707.1^ENSG00000243150.6" ; exon_id "ENSE00001866937.1" ; exon_number 1 ; gene_id "AC106707.1--IQCJ^AC106707.1^ENSG00000243150.6" ; gene_name "AC106707.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158791.5" ; havana_transcript "OTTHUMT00000352221.2" ; level 2 ; orig_coord_info "chr3,158570171,158571066,-" ; tag basic TAGENE ; transcript_id "AC106707.1--IQCJ^ENST00000475981.6" ; transcript_name "AC106707.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
AC106707.1--IQCJ HAVANA RNA 1001 7229 . + . FI_gene_label "AC106707.1^ENSG00000243150.6" ; ID "AC106707.1--IQCJ^ENST00000475981.6" ; Parent "AC106707.1--IQCJ^AC106707.1^ENSG00000243150.6" ; exon_id "ENSE00001866937.1" ; exon_number 1 ; gene_id "AC106707.1--IQCJ^AC106707.1^ENSG00000243150.6" ; gene_name "AC106707.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158791.5" ; havana_transcript "OTTHUMT00000352221.2" ; level 2 ; orig_coord_info "chr3,158570171,158571066,-" ; tag basic TAGENE ; transcript_id "AC106707.1--IQCJ^ENST00000475981.6" ; transcript_name "AC106707.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC106707.1--SCHIP1 HAVANA gene 1001 7229 . + . FI_gene_label "AC106707.1^ENSG00000243150.6" ; ID "AC106707.1--SCHIP1^AC106707.1^ENSG00000243150.6" ; exon_id "ENSE00001866937.1" ; exon_number 1 ; gene_id "AC106707.1--SCHIP1^AC106707.1^ENSG00000243150.6" ; gene_name "AC106707.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158791.5" ; havana_transcript "OTTHUMT00000352221.2" ; level 2 ; orig_coord_info "chr3,158570171,158571066,-" ; tag basic TAGENE ; transcript_id "AC106707.1--SCHIP1^ENST00000475981.6" ; transcript_name "AC106707.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
AC106707.1--SCHIP1 HAVANA RNA 1001 7229 . + . FI_gene_label "AC106707.1^ENSG00000243150.6" ; ID "AC106707.1--SCHIP1^ENST00000475981.6" ; Parent "AC106707.1--SCHIP1^AC106707.1^ENSG00000243150.6" ; exon_id "ENSE00001866937.1" ; exon_number 1 ; gene_id "AC106707.1--SCHIP1^AC106707.1^ENSG00000243150.6" ; gene_name "AC106707.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158791.5" ; havana_transcript "OTTHUMT00000352221.2" ; level 2 ; orig_coord_info "chr3,158570171,158571066,-" ; tag basic TAGENE ; transcript_id "AC106707.1--SCHIP1^ENST00000475981.6" ; transcript_name "AC106707.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC129926.2--NBEAP1 HAVANA gene 7500 18337 . + . FI_gene_label "NBEAP1^ENSG00000258590.5" ; ID "AC129926.2--NBEAP1^NBEAP1^ENSG00000258590.5" ; exon_id "ENSE00002445434.1" ; exon_number 1 ; gene_id "AC129926.2--NBEAP1^NBEAP1^ENSG00000258590.5" ; gene_name NBEAP1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000171717.2" ; havana_transcript "OTTHUMT00000414852.1" ; hgnc_id "HGNC:1007" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr15,20688215,20688408,-" ; tag basic ; transcript_id "AC129926.2--NBEAP1^ENST00000554452.5" ; transcript_name "NBEAP1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AC129926.2--NBEAP1 HAVANA RNA 7500 18337 . + . FI_gene_label "NBEAP1^ENSG00000258590.5" ; ID "AC129926.2--NBEAP1^ENST00000554452.5" ; Parent "AC129926.2--NBEAP1^NBEAP1^ENSG00000258590.5" ; exon_id "ENSE00002445434.1" ; exon_number 1 ; gene_id "AC129926.2--NBEAP1^NBEAP1^ENSG00000258590.5" ; gene_name NBEAP1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000171717.2" ; havana_transcript "OTTHUMT00000414852.1" ; hgnc_id "HGNC:1007" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr15,20688215,20688408,-" ; tag basic ; transcript_id "AC129926.2--NBEAP1^ENST00000554452.5" ; transcript_name "NBEAP1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC129926.2--NBEAP1 HAVANA gene 1001 4499 . + . FI_gene_label "AC129926.2^ENSG00000285822.1" ; ID "AC129926.2--NBEAP1^AC129926.2^ENSG00000285822.1" ; exon_id "ENSE00003831900.1" ; exon_number 1 ; gene_id "AC129926.2--NBEAP1^AC129926.2^ENSG00000285822.1" ; gene_name "AC129926.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193097.1" ; havana_transcript "OTTHUMT00000500132.1" ; level 2 ; orig_coord_info "chr17,27089545,27089884,+" ; tag basic ; transcript_id "AC129926.2--NBEAP1^ENST00000649401.1" ; transcript_name "AC129926.2-201" ; transcript_type lncRNA
AC129926.2--NBEAP1 HAVANA RNA 1001 4499 . + . FI_gene_label "AC129926.2^ENSG00000285822.1" ; ID "AC129926.2--NBEAP1^ENST00000649401.1" ; Parent "AC129926.2--NBEAP1^AC129926.2^ENSG00000285822.1" ; exon_id "ENSE00003831900.1" ; exon_number 1 ; gene_id "AC129926.2--NBEAP1^AC129926.2^ENSG00000285822.1" ; gene_name "AC129926.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193097.1" ; havana_transcript "OTTHUMT00000500132.1" ; level 2 ; orig_coord_info "chr17,27089545,27089884,+" ; tag basic ; transcript_id "AC129926.2--NBEAP1^ENST00000649401.1" ; transcript_name "AC129926.2-201" ; transcript_type lncRNA
L1 and L2 created:
AC233699.1--TBC1D3 HAVANA gene 1001 9975 . + . FI_gene_label "AC233699.1^ENSG00000261499.2" ; ID "AC233699.1--TBC1D3^AC233699.1^ENSG00000261499.2" ; exon_id "ENSE00002600750.2" ; exon_number 1 ; gene_id "AC233699.1--TBC1D3^AC233699.1^ENSG00000261499.2" ; gene_name "AC233699.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188425.1" ; havana_transcript "OTTHUMT00000477176.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr17,36274191,36274283,+" ; tag basic ; transcript_id "AC233699.1--TBC1D3^ENST00000569955.2" ; transcript_name "AC233699.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AC233699.1--TBC1D3 HAVANA RNA 1001 9975 . + . FI_gene_label "AC233699.1^ENSG00000261499.2" ; ID "AC233699.1--TBC1D3^ENST00000569955.2" ; Parent "AC233699.1--TBC1D3^AC233699.1^ENSG00000261499.2" ; exon_id "ENSE00002600750.2" ; exon_number 1 ; gene_id "AC233699.1--TBC1D3^AC233699.1^ENSG00000261499.2" ; gene_name "AC233699.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188425.1" ; havana_transcript "OTTHUMT00000477176.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr17,36274191,36274283,+" ; tag basic ; transcript_id "AC233699.1--TBC1D3^ENST00000569955.2" ; transcript_name "AC233699.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
AC242842.2--RIIAD1 HAVANA gene 1001 2050 . + . FI_gene_label "AC242842.2^ENSG00000284964.1" ; ID "AC242842.2--RIIAD1^AC242842.2^ENSG00000284964.1" ; exon_id "ENSE00003822980.1" ; exon_number 1 ; gene_id "AC242842.2--RIIAD1^AC242842.2^ENSG00000284964.1" ; gene_name "AC242842.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192548.1" ; havana_transcript "OTTHUMT00000495988.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,149607467,149607554,+" ; tag mRNA_end_NF basic ; transcript_id "AC242842.2--RIIAD1^ENST00000643225.1" ; transcript_name "AC242842.2-201" ; transcript_type transcribed_unprocessed_pseudogene
AC242842.2--RIIAD1 HAVANA RNA 1001 2050 . + . FI_gene_label "AC242842.2^ENSG00000284964.1" ; ID "AC242842.2--RIIAD1^ENST00000643225.1" ; Parent "AC242842.2--RIIAD1^AC242842.2^ENSG00000284964.1" ; exon_id "ENSE00003822980.1" ; exon_number 1 ; gene_id "AC242842.2--RIIAD1^AC242842.2^ENSG00000284964.1" ; gene_name "AC242842.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000192548.1" ; havana_transcript "OTTHUMT00000495988.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,149607467,149607554,+" ; tag mRNA_end_NF basic ; transcript_id "AC242842.2--RIIAD1^ENST00000643225.1" ; transcript_name "AC242842.2-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AL391358.1--KLHL13 HAVANA gene 1001 2190 . + . FI_gene_label "AL391358.1^ENSG00000270619.1" ; ID "AL391358.1--KLHL13^AL391358.1^ENSG00000270619.1" ; exon_id "ENSE00003514717.1" ; exon_number 1 ; gene_id "AL391358.1--KLHL13^AL391358.1^ENSG00000270619.1" ; gene_name "AL391358.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000185062.1" ; havana_transcript "OTTHUMT00000469515.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chrX,118278159,118278252,+" ; tag pseudo_consens basic ; transcript_id "AL391358.1--KLHL13^ENST00000605342.1" ; transcript_name "AL391358.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AL391358.1--KLHL13 HAVANA RNA 1001 2190 . + . FI_gene_label "AL391358.1^ENSG00000270619.1" ; ID "AL391358.1--KLHL13^ENST00000605342.1" ; Parent "AL391358.1--KLHL13^AL391358.1^ENSG00000270619.1" ; exon_id "ENSE00003514717.1" ; exon_number 1 ; gene_id "AL391358.1--KLHL13^AL391358.1^ENSG00000270619.1" ; gene_name "AL391358.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000185062.1" ; havana_transcript "OTTHUMT00000469515.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chrX,118278159,118278252,+" ; tag pseudo_consens basic ; transcript_id "AL391358.1--KLHL13^ENST00000605342.1" ; transcript_name "AL391358.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
ANP32E--LINC00869 HAVANA gene 14606 18193 . + . FI_gene_label "LINC00869^ENSG00000277147.6" ; ID "ANP32E--LINC00869^LINC00869^ENSG00000277147.6" ; exon_id "ENSE00001775586.2" ; exon_number 1 ; gene_id "ANP32E--LINC00869^LINC00869^ENSG00000277147.6" ; gene_name LINC00869 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000182426.7" ; havana_transcript "OTTHUMT00000038353.3" ; hgnc_id "HGNC:29050" ; level 2 ; orig_coord_info "chr1,149606334,149606419,+" ; tag basic ; transcript_id "ANP32E--LINC00869^ENST00000429388.5" ; transcript_name "LINC00869-201" ; transcript_support_level 5 ; transcript_type processed_transcript
ANP32E--LINC00869 HAVANA RNA 14606 18193 . + . FI_gene_label "LINC00869^ENSG00000277147.6" ; ID "ANP32E--LINC00869^ENST00000429388.5" ; Parent "ANP32E--LINC00869^LINC00869^ENSG00000277147.6" ; exon_id "ENSE00001775586.2" ; exon_number 1 ; gene_id "ANP32E--LINC00869^LINC00869^ENSG00000277147.6" ; gene_name LINC00869 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000182426.7" ; havana_transcript "OTTHUMT00000038353.3" ; hgnc_id "HGNC:29050" ; level 2 ; orig_coord_info "chr1,149606334,149606419,+" ; tag basic ; transcript_id "ANP32E--LINC00869^ENST00000429388.5" ; transcript_name "LINC00869-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
CHD1L--NBPF13P HAVANA gene 28688 41723 . + . FI_gene_label "NBPF13P^ENSG00000283342.1" ; ID "CHD1L--NBPF13P^NBPF13P^ENSG00000283342.1" ; exon_id "ENSE00001796422.2" ; exon_number 1 ; gene_id "CHD1L--NBPF13P^NBPF13P^ENSG00000283342.1" ; gene_name NBPF13P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000041474.4" ; havana_transcript "OTTHUMT00000099375.4" ; hgnc_id "HGNC:31995" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,147124073,147124285,-" ; tag basic ; transcript_id "CHD1L--NBPF13P^ENST00000637142.1" ; transcript_name "NBPF13P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
CHD1L--NBPF13P HAVANA RNA 28688 41723 . + . FI_gene_label "NBPF13P^ENSG00000283342.1" ; ID "CHD1L--NBPF13P^ENST00000637142.1" ; Parent "CHD1L--NBPF13P^NBPF13P^ENSG00000283342.1" ; exon_id "ENSE00001796422.2" ; exon_number 1 ; gene_id "CHD1L--NBPF13P^NBPF13P^ENSG00000283342.1" ; gene_name NBPF13P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000041474.4" ; havana_transcript "OTTHUMT00000099375.4" ; hgnc_id "HGNC:31995" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,147124073,147124285,-" ; tag basic ; transcript_id "CHD1L--NBPF13P^ENST00000637142.1" ; transcript_name "NBPF13P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
CYCTP--PDE11A HAVANA gene 1001 2631 . + . FI_gene_label "CYCTP^ENSG00000249909.1" ; ID "CYCTP--PDE11A^CYCTP^ENSG00000249909.1" ; exon_id "ENSE00002053327.1" ; exon_number 1 ; gene_id "CYCTP--PDE11A^CYCTP^ENSG00000249909.1" ; gene_name CYCTP ; gene_type unitary_pseudogene ; havana_gene "OTTHUMG00000154943.1" ; havana_transcript "OTTHUMT00000337764.1" ; hgnc_id "HGNC:24424" ; level 2 ; ont "PGO:0000006" ; orig_coord_info "chr2,178104302,178104470,-" ; tag basic ; transcript_id "CYCTP--PDE11A^ENST00000504253.1" ; transcript_name "CYCTP-201" ; transcript_support_level NA ; transcript_type unitary_pseudogene
CYCTP--PDE11A HAVANA RNA 1001 2631 . + . FI_gene_label "CYCTP^ENSG00000249909.1" ; ID "CYCTP--PDE11A^ENST00000504253.1" ; Parent "CYCTP--PDE11A^CYCTP^ENSG00000249909.1" ; exon_id "ENSE00002053327.1" ; exon_number 1 ; gene_id "CYCTP--PDE11A^CYCTP^ENSG00000249909.1" ; gene_name CYCTP ; gene_type unitary_pseudogene ; havana_gene "OTTHUMG00000154943.1" ; havana_transcript "OTTHUMT00000337764.1" ; hgnc_id "HGNC:24424" ; level 2 ; ont "PGO:0000006" ; orig_coord_info "chr2,178104302,178104470,-" ; tag basic ; transcript_id "CYCTP--PDE11A^ENST00000504253.1" ; transcript_name "CYCTP-201" ; transcript_support_level NA ; transcript_type unitary_pseudogene
L1 and L2 created:
FBXO25--AL669831.1 HAVANA gene 27445 33435 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "FBXO25--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "FBXO25--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "FBXO25--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
FBXO25--AL669831.1 HAVANA RNA 27445 33435 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "FBXO25--AL669831.1^ENST00000428504.2" ; Parent "FBXO25--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "FBXO25--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "FBXO25--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
GPD1L--RPL21P40 HAVANA gene 15938 16420 . + . FI_gene_label "RPL21P40^ENSG00000235670.1" ; ID "GPD1L--RPL21P40^RPL21P40^ENSG00000235670.1" ; exon_id "ENSE00001796580.1" ; exon_number 1 ; gene_id "GPD1L--RPL21P40^RPL21P40^ENSG00000235670.1" ; gene_name RPL21P40 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000155839.1" ; havana_transcript "OTTHUMT00000341963.1" ; hgnc_id "HGNC:36189" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr3,32030196,32030678,+" ; tag pseudo_consens basic ; transcript_id "GPD1L--RPL21P40^ENST00000428586.1" ; transcript_name "RPL21P40-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
GPD1L--RPL21P40 HAVANA RNA 15938 16420 . + . FI_gene_label "RPL21P40^ENSG00000235670.1" ; ID "GPD1L--RPL21P40^ENST00000428586.1" ; Parent "GPD1L--RPL21P40^RPL21P40^ENSG00000235670.1" ; exon_id "ENSE00001796580.1" ; exon_number 1 ; gene_id "GPD1L--RPL21P40^RPL21P40^ENSG00000235670.1" ; gene_name RPL21P40 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000155839.1" ; havana_transcript "OTTHUMT00000341963.1" ; hgnc_id "HGNC:36189" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr3,32030196,32030678,+" ; tag pseudo_consens basic ; transcript_id "GPD1L--RPL21P40^ENST00000428586.1" ; transcript_name "RPL21P40-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
GUCY1B2--NKAIN2 HAVANA gene 2157 15439 . + . FI_gene_label "GUCY1B2^ENSG00000123201.14" ; ID "GUCY1B2--NKAIN2^GUCY1B2^ENSG00000123201.14" ; exon_id "ENSE00001531871.1" ; exon_number 1 ; gene_id "GUCY1B2--NKAIN2^GUCY1B2^ENSG00000123201.14" ; gene_name GUCY1B2 ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000016940.5" ; havana_transcript "OTTHUMT00000045017.2" ; hgnc_id "HGNC:4686" ; level 2 ; orig_coord_info "chr13,51065951,51066207,-" ; transcript_id "GUCY1B2--NKAIN2^ENST00000389600.6" ; transcript_name "GUCY1B2-201" ; transcript_support_level 5 ; transcript_type processed_transcript
GUCY1B2--NKAIN2 HAVANA RNA 2157 15439 . + . FI_gene_label "GUCY1B2^ENSG00000123201.14" ; ID "GUCY1B2--NKAIN2^ENST00000389600.6" ; Parent "GUCY1B2--NKAIN2^GUCY1B2^ENSG00000123201.14" ; exon_id "ENSE00001531871.1" ; exon_number 1 ; gene_id "GUCY1B2--NKAIN2^GUCY1B2^ENSG00000123201.14" ; gene_name GUCY1B2 ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000016940.5" ; havana_transcript "OTTHUMT00000045017.2" ; hgnc_id "HGNC:4686" ; level 2 ; orig_coord_info "chr13,51065951,51066207,-" ; transcript_id "GUCY1B2--NKAIN2^ENST00000389600.6" ; transcript_name "GUCY1B2-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
HYDIN2--GPR89A HAVANA gene 94682 98467 . + . FI_gene_label "HYDIN2^ENSG00000276975.3" ; ID "HYDIN2--GPR89A^HYDIN2^ENSG00000276975.3" ; exon_id "ENSE00001923356.1" ; exon_number 1 ; gene_id "HYDIN2--GPR89A^HYDIN2^ENSG00000276975.3" ; gene_name HYDIN2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000158075.6" ; havana_transcript "OTTHUMT00000350131.1" ; hgnc_id "HGNC:33129" ; level 2 ; orig_coord_info "chr1,146898942,146898974,+" ; tag basic ; transcript_id "HYDIN2--GPR89A^ENST00000493714.1" ; transcript_name "HYDIN2-201" ; transcript_support_level 4 ; transcript_type processed_transcript
HYDIN2--GPR89A HAVANA RNA 94682 98467 . + . FI_gene_label "HYDIN2^ENSG00000276975.3" ; ID "HYDIN2--GPR89A^ENST00000493714.1" ; Parent "HYDIN2--GPR89A^HYDIN2^ENSG00000276975.3" ; exon_id "ENSE00001923356.1" ; exon_number 1 ; gene_id "HYDIN2--GPR89A^HYDIN2^ENSG00000276975.3" ; gene_name HYDIN2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000158075.6" ; havana_transcript "OTTHUMT00000350131.1" ; hgnc_id "HGNC:33129" ; level 2 ; orig_coord_info "chr1,146898942,146898974,+" ; tag basic ; transcript_id "HYDIN2--GPR89A^ENST00000493714.1" ; transcript_name "HYDIN2-201" ; transcript_support_level 4 ; transcript_type processed_transcript
L1 and L2 created:
IKZF2--AC093865.1 HAVANA gene 27900 32332 . + . FI_gene_label "AC093865.1^ENSG00000273118.1" ; ID "IKZF2--AC093865.1^AC093865.1^ENSG00000273118.1" ; exon_id "ENSE00001727631.1" ; exon_number 1 ; gene_id "IKZF2--AC093865.1^AC093865.1^ENSG00000273118.1" ; gene_name "AC093865.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154820.1" ; havana_transcript "OTTHUMT00000337265.1" ; level 2 ; orig_coord_info "chr2,213021465,213021545,-" ; tag basic ; transcript_id "IKZF2--AC093865.1^ENST00000415387.1" ; transcript_name "AC093865.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
IKZF2--AC093865.1 HAVANA RNA 27900 32332 . + . FI_gene_label "AC093865.1^ENSG00000273118.1" ; ID "IKZF2--AC093865.1^ENST00000415387.1" ; Parent "IKZF2--AC093865.1^AC093865.1^ENSG00000273118.1" ; exon_id "ENSE00001727631.1" ; exon_number 1 ; gene_id "IKZF2--AC093865.1^AC093865.1^ENSG00000273118.1" ; gene_name "AC093865.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154820.1" ; havana_transcript "OTTHUMT00000337265.1" ; level 2 ; orig_coord_info "chr2,213021465,213021545,-" ; tag basic ; transcript_id "IKZF2--AC093865.1^ENST00000415387.1" ; transcript_name "AC093865.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
IQSEC1--AC006504.2 HAVANA gene 36028 39821 . + . FI_gene_label "AC006504.2^ENSG00000266977.2" ; ID "IQSEC1--AC006504.2^AC006504.2^ENSG00000266977.2" ; exon_id "ENSE00002897010.1" ; exon_number 1 ; gene_id "IQSEC1--AC006504.2^AC006504.2^ENSG00000266977.2" ; gene_name "AC006504.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180741.2" ; havana_transcript "OTTHUMT00000452858.1" ; level 2 ; orig_coord_info "chr19,27889105,27889222,-" ; transcript_id "IQSEC1--AC006504.2^ENST00000589471.1" ; transcript_name "AC006504.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
IQSEC1--AC006504.2 HAVANA RNA 36028 39821 . + . FI_gene_label "AC006504.2^ENSG00000266977.2" ; ID "IQSEC1--AC006504.2^ENST00000589471.1" ; Parent "IQSEC1--AC006504.2^AC006504.2^ENSG00000266977.2" ; exon_id "ENSE00002897010.1" ; exon_number 1 ; gene_id "IQSEC1--AC006504.2^AC006504.2^ENSG00000266977.2" ; gene_name "AC006504.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180741.2" ; havana_transcript "OTTHUMT00000452858.1" ; level 2 ; orig_coord_info "chr19,27889105,27889222,-" ; transcript_id "IQSEC1--AC006504.2^ENST00000589471.1" ; transcript_name "AC006504.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
IQSEC1--AC006504.5 HAVANA gene 36636 37749 . + . FI_gene_label "AC006504.5^ENSG00000267575.7" ; ID "IQSEC1--AC006504.5^AC006504.5^ENSG00000267575.7" ; exon_id "ENSE00002797686.1" ; exon_number 1 ; gene_id "IQSEC1--AC006504.5^AC006504.5^ENSG00000267575.7" ; gene_name "AC006504.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185849.20" ; havana_transcript "OTTHUMT00000452853.1" ; level 2 ; orig_coord_info "chr19,27794039,27794122,+" ; transcript_id "IQSEC1--AC006504.5^ENST00000585827.1" ; transcript_name "AC006504.5-212" ; transcript_support_level 4 ; transcript_type lncRNA
IQSEC1--AC006504.5 HAVANA RNA 36636 37749 . + . FI_gene_label "AC006504.5^ENSG00000267575.7" ; ID "IQSEC1--AC006504.5^ENST00000585827.1" ; Parent "IQSEC1--AC006504.5^AC006504.5^ENSG00000267575.7" ; exon_id "ENSE00002797686.1" ; exon_number 1 ; gene_id "IQSEC1--AC006504.5^AC006504.5^ENSG00000267575.7" ; gene_name "AC006504.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185849.20" ; havana_transcript "OTTHUMT00000452853.1" ; level 2 ; orig_coord_info "chr19,27794039,27794122,+" ; transcript_id "IQSEC1--AC006504.5^ENST00000585827.1" ; transcript_name "AC006504.5-212" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
ITGB5--SEC22B2P HAVANA gene 30602 34174 . + . FI_gene_label "SEC22B2P^ENSG00000274423.1" ; ID "ITGB5--SEC22B2P^SEC22B2P^ENSG00000274423.1" ; exon_id "ENSE00003738038.1" ; exon_number 1 ; gene_id "ITGB5--SEC22B2P^SEC22B2P^ENSG00000274423.1" ; gene_name SEC22B2P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000013745.8" ; havana_transcript "OTTHUMT00000476568.2" ; hgnc_id "HGNC:53890" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,149345661,149345770,+" ; tag basic ; transcript_id "ITGB5--SEC22B2P^ENST00000618702.1" ; transcript_name "SEC22B2P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
ITGB5--SEC22B2P HAVANA RNA 30602 34174 . + . FI_gene_label "SEC22B2P^ENSG00000274423.1" ; ID "ITGB5--SEC22B2P^ENST00000618702.1" ; Parent "ITGB5--SEC22B2P^SEC22B2P^ENSG00000274423.1" ; exon_id "ENSE00003738038.1" ; exon_number 1 ; gene_id "ITGB5--SEC22B2P^SEC22B2P^ENSG00000274423.1" ; gene_name SEC22B2P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000013745.8" ; havana_transcript "OTTHUMT00000476568.2" ; hgnc_id "HGNC:53890" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,149345661,149345770,+" ; tag basic ; transcript_id "ITGB5--SEC22B2P^ENST00000618702.1" ; transcript_name "SEC22B2P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
KIF1C--AC004771.2 HAVANA gene 25570 26310 . + . FI_gene_label "AC004771.2^ENSG00000262227.1" ; ID "KIF1C--AC004771.2^AC004771.2^ENSG00000262227.1" ; exon_id "ENSE00002663931.1" ; exon_number 1 ; gene_id "KIF1C--AC004771.2^AC004771.2^ENSG00000262227.1" ; gene_name "AC004771.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177767.1" ; havana_transcript "OTTHUMT00000438882.1" ; level 2 ; orig_coord_info "chr17,4987706,4988225,+" ; tag basic ; transcript_id "KIF1C--AC004771.2^ENST00000574260.1" ; transcript_name "AC004771.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
KIF1C--AC004771.2 HAVANA RNA 25570 26310 . + . FI_gene_label "AC004771.2^ENSG00000262227.1" ; ID "KIF1C--AC004771.2^ENST00000574260.1" ; Parent "KIF1C--AC004771.2^AC004771.2^ENSG00000262227.1" ; exon_id "ENSE00002663931.1" ; exon_number 1 ; gene_id "KIF1C--AC004771.2^AC004771.2^ENSG00000262227.1" ; gene_name "AC004771.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177767.1" ; havana_transcript "OTTHUMT00000438882.1" ; level 2 ; orig_coord_info "chr17,4987706,4988225,+" ; tag basic ; transcript_id "KIF1C--AC004771.2^ENST00000574260.1" ; transcript_name "AC004771.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
KIF1C--AC004771.4 HAVANA gene 25570 26428 . + . FI_gene_label "AC004771.4^ENSG00000262678.1" ; ID "KIF1C--AC004771.4^AC004771.4^ENSG00000262678.1" ; exon_id "ENSE00002632440.1" ; exon_number 1 ; gene_id "KIF1C--AC004771.4^AC004771.4^ENSG00000262678.1" ; gene_name "AC004771.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177765.1" ; havana_transcript "OTTHUMT00000438880.1" ; level 2 ; orig_coord_info "chr17,4986466,4986494,+" ; tag basic ; transcript_id "KIF1C--AC004771.4^ENST00000575985.1" ; transcript_name "AC004771.4-201" ; transcript_support_level 4 ; transcript_type lncRNA
KIF1C--AC004771.4 HAVANA RNA 25570 26428 . + . FI_gene_label "AC004771.4^ENSG00000262678.1" ; ID "KIF1C--AC004771.4^ENST00000575985.1" ; Parent "KIF1C--AC004771.4^AC004771.4^ENSG00000262678.1" ; exon_id "ENSE00002632440.1" ; exon_number 1 ; gene_id "KIF1C--AC004771.4^AC004771.4^ENSG00000262678.1" ; gene_name "AC004771.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177765.1" ; havana_transcript "OTTHUMT00000438880.1" ; level 2 ; orig_coord_info "chr17,4986466,4986494,+" ; tag basic ; transcript_id "KIF1C--AC004771.4^ENST00000575985.1" ; transcript_name "AC004771.4-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
LINC00381--NKAIN2 HAVANA gene 1016 4365 . + . FI_gene_label "LINC00381^ENSG00000226240.2" ; ID "LINC00381--NKAIN2^LINC00381^ENSG00000226240.2" ; exon_id "ENSE00001743371.1" ; exon_number 1 ; gene_id "LINC00381--NKAIN2^LINC00381^ENSG00000226240.2" ; gene_name LINC00381 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017081.2" ; havana_transcript "OTTHUMT00000045275.1" ; hgnc_id "HGNC:42708" ; level 2 ; orig_coord_info "chr13,74419173,74419228,+" ; transcript_id "LINC00381--NKAIN2^ENST00000423629.1" ; transcript_name "LINC00381-201" ; transcript_support_level 5 ; transcript_type lncRNA
LINC00381--NKAIN2 HAVANA RNA 1016 4365 . + . FI_gene_label "LINC00381^ENSG00000226240.2" ; ID "LINC00381--NKAIN2^ENST00000423629.1" ; Parent "LINC00381--NKAIN2^LINC00381^ENSG00000226240.2" ; exon_id "ENSE00001743371.1" ; exon_number 1 ; gene_id "LINC00381--NKAIN2^LINC00381^ENSG00000226240.2" ; gene_name LINC00381 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017081.2" ; havana_transcript "OTTHUMT00000045275.1" ; hgnc_id "HGNC:42708" ; level 2 ; orig_coord_info "chr13,74419173,74419228,+" ; transcript_id "LINC00381--NKAIN2^ENST00000423629.1" ; transcript_name "LINC00381-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
LINC00623--RIIAD1 HAVANA gene 1001 3289 . + . FI_gene_label "LINC00623^ENSG00000226067.7" ; ID "LINC00623--RIIAD1^LINC00623^ENSG00000226067.7" ; exon_id "ENSE00003748963.2" ; exon_number 1 ; gene_id "LINC00623--RIIAD1^LINC00623^ENSG00000226067.7" ; gene_name LINC00623 ; gene_type lncRNA ; havana_gene "OTTHUMG00000185016.4" ; havana_transcript "OTTHUMT00000469447.2" ; hgnc_id "HGNC:44252" ; level 2 ; orig_coord_info "chr1,120913184,120913450,+" ; tag basic TAGENE ; transcript_id "LINC00623--RIIAD1^ENST00000613486.2" ; transcript_name "LINC00623-201" ; transcript_support_level 5 ; transcript_type lncRNA
LINC00623--RIIAD1 HAVANA RNA 1001 3289 . + . FI_gene_label "LINC00623^ENSG00000226067.7" ; ID "LINC00623--RIIAD1^ENST00000613486.2" ; Parent "LINC00623--RIIAD1^LINC00623^ENSG00000226067.7" ; exon_id "ENSE00003748963.2" ; exon_number 1 ; gene_id "LINC00623--RIIAD1^LINC00623^ENSG00000226067.7" ; gene_name LINC00623 ; gene_type lncRNA ; havana_gene "OTTHUMG00000185016.4" ; havana_transcript "OTTHUMT00000469447.2" ; hgnc_id "HGNC:44252" ; level 2 ; orig_coord_info "chr1,120913184,120913450,+" ; tag basic TAGENE ; transcript_id "LINC00623--RIIAD1^ENST00000613486.2" ; transcript_name "LINC00623-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
LINC01674--POTED HAVANA gene 2222 5581 . + . FI_gene_label "LINC01674^ENSG00000228159.2" ; ID "LINC01674--POTED^LINC01674^ENSG00000228159.2" ; exon_id "ENSE00001662293.1" ; exon_number 1 ; gene_id "LINC01674--POTED^LINC01674^ENSG00000228159.2" ; gene_name LINC01674 ; gene_type lncRNA ; havana_gene "OTTHUMG00000074207.4" ; havana_transcript "OTTHUMT00000157670.1" ; hgnc_id "HGNC:52462" ; level 1 ; orig_coord_info "chr21,13546033,13546123,+" ; tag exp_conf ; transcript_id "LINC01674--POTED^ENST00000427446.1" ; transcript_name "LINC01674-201" ; transcript_support_level 3 ; transcript_type lncRNA
LINC01674--POTED HAVANA RNA 2222 5581 . + . FI_gene_label "LINC01674^ENSG00000228159.2" ; ID "LINC01674--POTED^ENST00000427446.1" ; Parent "LINC01674--POTED^LINC01674^ENSG00000228159.2" ; exon_id "ENSE00001662293.1" ; exon_number 1 ; gene_id "LINC01674--POTED^LINC01674^ENSG00000228159.2" ; gene_name LINC01674 ; gene_type lncRNA ; havana_gene "OTTHUMG00000074207.4" ; havana_transcript "OTTHUMT00000157670.1" ; hgnc_id "HGNC:52462" ; level 1 ; orig_coord_info "chr21,13546033,13546123,+" ; tag exp_conf ; transcript_id "LINC01674--POTED^ENST00000427446.1" ; transcript_name "LINC01674-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
LINC02835--RYR3 HAVANA gene 1001 3858 . + . FI_gene_label "LINC02835^ENSG00000285711.1" ; ID "LINC02835--RYR3^LINC02835^ENSG00000285711.1" ; exon_id "ENSE00003831505.1" ; exon_number 1 ; gene_id "LINC02835--RYR3^LINC02835^ENSG00000285711.1" ; gene_name LINC02835 ; gene_type lncRNA ; havana_gene "OTTHUMG00000193080.1" ; havana_transcript "OTTHUMT00000500087.1" ; hgnc_id "HGNC:54369" ; level 2 ; orig_coord_info "chr4,65241182,65241814,-" ; tag basic ; transcript_id "LINC02835--RYR3^ENST00000649562.1" ; transcript_name "LINC02835-201" ; transcript_type lncRNA
LINC02835--RYR3 HAVANA RNA 1001 3858 . + . FI_gene_label "LINC02835^ENSG00000285711.1" ; ID "LINC02835--RYR3^ENST00000649562.1" ; Parent "LINC02835--RYR3^LINC02835^ENSG00000285711.1" ; exon_id "ENSE00003831505.1" ; exon_number 1 ; gene_id "LINC02835--RYR3^LINC02835^ENSG00000285711.1" ; gene_name LINC02835 ; gene_type lncRNA ; havana_gene "OTTHUMG00000193080.1" ; havana_transcript "OTTHUMT00000500087.1" ; hgnc_id "HGNC:54369" ; level 2 ; orig_coord_info "chr4,65241182,65241814,-" ; tag basic ; transcript_id "LINC02835--RYR3^ENST00000649562.1" ; transcript_name "LINC02835-201" ; transcript_type lncRNA
L1 and L2 created:
MECP2--AC244097.1 HAVANA gene 35462 38296 . + . FI_gene_label "AC244097.1^ENSG00000277009.1" ; ID "MECP2--AC244097.1^AC244097.1^ENSG00000277009.1" ; exon_id "ENSE00003733061.1" ; exon_number 1 ; gene_id "MECP2--AC244097.1^AC244097.1^ENSG00000277009.1" ; gene_name "AC244097.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188366.1" ; havana_transcript "OTTHUMT00000476992.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chrX,154250562,154251288,-" ; tag basic ; transcript_id "MECP2--AC244097.1^ENST00000621631.1" ; transcript_name "AC244097.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
MECP2--AC244097.1 HAVANA RNA 35462 38296 . + . FI_gene_label "AC244097.1^ENSG00000277009.1" ; ID "MECP2--AC244097.1^ENST00000621631.1" ; Parent "MECP2--AC244097.1^AC244097.1^ENSG00000277009.1" ; exon_id "ENSE00003733061.1" ; exon_number 1 ; gene_id "MECP2--AC244097.1^AC244097.1^ENSG00000277009.1" ; gene_name "AC244097.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188366.1" ; havana_transcript "OTTHUMT00000476992.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chrX,154250562,154251288,-" ; tag basic ; transcript_id "MECP2--AC244097.1^ENST00000621631.1" ; transcript_name "AC244097.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
MIR4713HG--GLDN HAVANA gene 1001 3561 . + . FI_gene_label "MIR4713HG^ENSG00000259240.1" ; ID "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; exon_id "ENSE00002575468.1" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; gene_name MIR4713HG ; gene_type lncRNA ; havana_gene "OTTHUMG00000172467.1" ; havana_transcript "OTTHUMT00000418684.1" ; hgnc_id "HGNC:53124" ; level 2 ; orig_coord_info "chr15,51037488,51037681,+" ; tag basic ; transcript_id "MIR4713HG--GLDN^ENST00000559909.1" ; transcript_name "MIR4713HG-201" ; transcript_support_level 4 ; transcript_type lncRNA
MIR4713HG--GLDN HAVANA RNA 1001 3561 . + . FI_gene_label "MIR4713HG^ENSG00000259240.1" ; ID "MIR4713HG--GLDN^ENST00000559909.1" ; Parent "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; exon_id "ENSE00002575468.1" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; gene_name MIR4713HG ; gene_type lncRNA ; havana_gene "OTTHUMG00000172467.1" ; havana_transcript "OTTHUMT00000418684.1" ; hgnc_id "HGNC:53124" ; level 2 ; orig_coord_info "chr15,51037488,51037681,+" ; tag basic ; transcript_id "MIR4713HG--GLDN^ENST00000559909.1" ; transcript_name "MIR4713HG-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
OTUD7B--AC242988.2 HAVANA gene 26088 28371 . + . FI_gene_label "AC242988.2^ENSG00000285554.1" ; ID "OTUD7B--AC242988.2^AC242988.2^ENSG00000285554.1" ; exon_id "ENSE00003836500.1" ; exon_number 1 ; gene_id "OTUD7B--AC242988.2^AC242988.2^ENSG00000285554.1" ; gene_name "AC242988.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193069.1" ; havana_transcript "OTTHUMT00000500067.1" ; level 2 ; orig_coord_info "chr1,150173049,150173600,+" ; tag basic ; transcript_id "OTUD7B--AC242988.2^ENST00000647691.1" ; transcript_name "AC242988.2-201" ; transcript_type lncRNA
OTUD7B--AC242988.2 HAVANA RNA 26088 28371 . + . FI_gene_label "AC242988.2^ENSG00000285554.1" ; ID "OTUD7B--AC242988.2^ENST00000647691.1" ; Parent "OTUD7B--AC242988.2^AC242988.2^ENSG00000285554.1" ; exon_id "ENSE00003836500.1" ; exon_number 1 ; gene_id "OTUD7B--AC242988.2^AC242988.2^ENSG00000285554.1" ; gene_name "AC242988.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193069.1" ; havana_transcript "OTTHUMT00000500067.1" ; level 2 ; orig_coord_info "chr1,150173049,150173600,+" ; tag basic ; transcript_id "OTUD7B--AC242988.2^ENST00000647691.1" ; transcript_name "AC242988.2-201" ; transcript_type lncRNA
L1 and L2 created:
PIP5K1A--LINC02799 HAVANA gene 23186 24511 . + . FI_gene_label "LINC02799^ENSG00000235887.2" ; ID "PIP5K1A--LINC02799^LINC02799^ENSG00000235887.2" ; exon_id "ENSE00001612977.1" ; exon_number 1 ; gene_id "PIP5K1A--LINC02799^LINC02799^ENSG00000235887.2" ; gene_name LINC02799 ; gene_type lncRNA ; havana_gene "OTTHUMG00000040701.2" ; havana_transcript "OTTHUMT00000097806.2" ; hgnc_id "HGNC:54324" ; level 2 ; orig_coord_info "chr1,143500371,143500512,-" ; tag not_best_in_genome_evidence basic ; transcript_id "PIP5K1A--LINC02799^ENST00000456469.1" ; transcript_name "LINC02799-201" ; transcript_support_level 5 ; transcript_type lncRNA
PIP5K1A--LINC02799 HAVANA RNA 23186 24511 . + . FI_gene_label "LINC02799^ENSG00000235887.2" ; ID "PIP5K1A--LINC02799^ENST00000456469.1" ; Parent "PIP5K1A--LINC02799^LINC02799^ENSG00000235887.2" ; exon_id "ENSE00001612977.1" ; exon_number 1 ; gene_id "PIP5K1A--LINC02799^LINC02799^ENSG00000235887.2" ; gene_name LINC02799 ; gene_type lncRNA ; havana_gene "OTTHUMG00000040701.2" ; havana_transcript "OTTHUMT00000097806.2" ; hgnc_id "HGNC:54324" ; level 2 ; orig_coord_info "chr1,143500371,143500512,-" ; tag not_best_in_genome_evidence basic ; transcript_id "PIP5K1A--LINC02799^ENST00000456469.1" ; transcript_name "LINC02799-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
PTPN20--BMS1P7 HAVANA gene 23485 30059 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "PTPN20--BMS1P7^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
PTPN20--BMS1P7 HAVANA RNA 23485 30059 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "PTPN20--BMS1P7^ENST00000602440.2" ; Parent "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "PTPN20--BMS1P7^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
RSRC1--AC106707.1 HAVANA gene 24791 31019 . + . FI_gene_label "AC106707.1^ENSG00000243150.6" ; ID "RSRC1--AC106707.1^AC106707.1^ENSG00000243150.6" ; exon_id "ENSE00001866937.1" ; exon_number 1 ; gene_id "RSRC1--AC106707.1^AC106707.1^ENSG00000243150.6" ; gene_name "AC106707.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158791.5" ; havana_transcript "OTTHUMT00000352221.2" ; level 2 ; orig_coord_info "chr3,158570171,158571066,-" ; tag basic TAGENE ; transcript_id "RSRC1--AC106707.1^ENST00000475981.6" ; transcript_name "AC106707.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
RSRC1--AC106707.1 HAVANA RNA 24791 31019 . + . FI_gene_label "AC106707.1^ENSG00000243150.6" ; ID "RSRC1--AC106707.1^ENST00000475981.6" ; Parent "RSRC1--AC106707.1^AC106707.1^ENSG00000243150.6" ; exon_id "ENSE00001866937.1" ; exon_number 1 ; gene_id "RSRC1--AC106707.1^AC106707.1^ENSG00000243150.6" ; gene_name "AC106707.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158791.5" ; havana_transcript "OTTHUMT00000352221.2" ; level 2 ; orig_coord_info "chr3,158570171,158571066,-" ; tag basic TAGENE ; transcript_id "RSRC1--AC106707.1^ENST00000475981.6" ; transcript_name "AC106707.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
SLC12A8--LINC02799 HAVANA gene 28589 29914 . + . FI_gene_label "LINC02799^ENSG00000235887.2" ; ID "SLC12A8--LINC02799^LINC02799^ENSG00000235887.2" ; exon_id "ENSE00001612977.1" ; exon_number 1 ; gene_id "SLC12A8--LINC02799^LINC02799^ENSG00000235887.2" ; gene_name LINC02799 ; gene_type lncRNA ; havana_gene "OTTHUMG00000040701.2" ; havana_transcript "OTTHUMT00000097806.2" ; hgnc_id "HGNC:54324" ; level 2 ; orig_coord_info "chr1,143500371,143500512,-" ; tag not_best_in_genome_evidence basic ; transcript_id "SLC12A8--LINC02799^ENST00000456469.1" ; transcript_name "LINC02799-201" ; transcript_support_level 5 ; transcript_type lncRNA
SLC12A8--LINC02799 HAVANA RNA 28589 29914 . + . FI_gene_label "LINC02799^ENSG00000235887.2" ; ID "SLC12A8--LINC02799^ENST00000456469.1" ; Parent "SLC12A8--LINC02799^LINC02799^ENSG00000235887.2" ; exon_id "ENSE00001612977.1" ; exon_number 1 ; gene_id "SLC12A8--LINC02799^LINC02799^ENSG00000235887.2" ; gene_name LINC02799 ; gene_type lncRNA ; havana_gene "OTTHUMG00000040701.2" ; havana_transcript "OTTHUMT00000097806.2" ; hgnc_id "HGNC:54324" ; level 2 ; orig_coord_info "chr1,143500371,143500512,-" ; tag not_best_in_genome_evidence basic ; transcript_id "SLC12A8--LINC02799^ENST00000456469.1" ; transcript_name "LINC02799-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
SLC5A4P1--OR8A1 HAVANA gene 1001 1612 . + . FI_gene_label "SLC5A4P1^ENSG00000255116.2" ; ID "SLC5A4P1--OR8A1^SLC5A4P1^ENSG00000255116.2" ; exon_id "ENSE00002146264.2" ; exon_number 1 ; gene_id "SLC5A4P1--OR8A1^SLC5A4P1^ENSG00000255116.2" ; gene_name SLC5A4P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000165976.2" ; havana_transcript "OTTHUMT00000387284.2" ; hgnc_id "HGNC:45041" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,124273970,124274581,+" ; tag pseudo_consens basic ; transcript_id "SLC5A4P1--OR8A1^ENST00000532944.2" ; transcript_name "SLC5A4P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
SLC5A4P1--OR8A1 HAVANA RNA 1001 1612 . + . FI_gene_label "SLC5A4P1^ENSG00000255116.2" ; ID "SLC5A4P1--OR8A1^ENST00000532944.2" ; Parent "SLC5A4P1--OR8A1^SLC5A4P1^ENSG00000255116.2" ; exon_id "ENSE00002146264.2" ; exon_number 1 ; gene_id "SLC5A4P1--OR8A1^SLC5A4P1^ENSG00000255116.2" ; gene_name SLC5A4P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000165976.2" ; havana_transcript "OTTHUMT00000387284.2" ; hgnc_id "HGNC:45041" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,124273970,124274581,+" ; tag pseudo_consens basic ; transcript_id "SLC5A4P1--OR8A1^ENST00000532944.2" ; transcript_name "SLC5A4P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
SNX27--AC244015.1 HAVANA gene 32367 32465 . + . FI_gene_label "AC244015.1^ENSG00000275075.1" ; ID "SNX27--AC244015.1^AC244015.1^ENSG00000275075.1" ; exon_id "ENSE00003742402.1" ; exon_number 1 ; gene_id "SNX27--AC244015.1^AC244015.1^ENSG00000275075.1" ; gene_name "AC244015.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000188643.1" ; havana_transcript "OTTHUMT00000477801.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr1,144168752,144168850,+" ; tag basic ; transcript_id "SNX27--AC244015.1^ENST00000622301.1" ; transcript_name "AC244015.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
SNX27--AC244015.1 HAVANA RNA 32367 32465 . + . FI_gene_label "AC244015.1^ENSG00000275075.1" ; ID "SNX27--AC244015.1^ENST00000622301.1" ; Parent "SNX27--AC244015.1^AC244015.1^ENSG00000275075.1" ; exon_id "ENSE00003742402.1" ; exon_number 1 ; gene_id "SNX27--AC244015.1^AC244015.1^ENSG00000275075.1" ; gene_name "AC244015.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000188643.1" ; havana_transcript "OTTHUMT00000477801.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr1,144168752,144168850,+" ; tag basic ; transcript_id "SNX27--AC244015.1^ENST00000622301.1" ; transcript_name "AC244015.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
SNX27--IGKV1OR1-1 HAVANA gene 32367 32837 . + . FI_gene_label "IGKV1OR1-1^ENSG00000276674.1" ; ID "SNX27--IGKV1OR1-1^IGKV1OR1-1^ENSG00000276674.1" ; exon_id "ENSE00003743944.1" ; exon_number 1 ; gene_id "SNX27--IGKV1OR1-1^IGKV1OR1-1^ENSG00000276674.1" ; gene_name "IGKV1OR1-1" ; gene_type IG_V_pseudogene ; havana_gene "OTTHUMG00000184566.2" ; havana_transcript "OTTHUMT00000468893.2" ; hgnc_id "HGNC:5764" ; level 1 ; orig_coord_info "chr1,144085628,144085676,+" ; tag pseudo_consens basic ; transcript_id "SNX27--IGKV1OR1-1^ENST00000613775.1" ; transcript_name "IGKV1OR1-1-201" ; transcript_support_level NA ; transcript_type IG_V_pseudogene
SNX27--IGKV1OR1-1 HAVANA RNA 32367 32837 . + . FI_gene_label "IGKV1OR1-1^ENSG00000276674.1" ; ID "SNX27--IGKV1OR1-1^ENST00000613775.1" ; Parent "SNX27--IGKV1OR1-1^IGKV1OR1-1^ENSG00000276674.1" ; exon_id "ENSE00003743944.1" ; exon_number 1 ; gene_id "SNX27--IGKV1OR1-1^IGKV1OR1-1^ENSG00000276674.1" ; gene_name "IGKV1OR1-1" ; gene_type IG_V_pseudogene ; havana_gene "OTTHUMG00000184566.2" ; havana_transcript "OTTHUMT00000468893.2" ; hgnc_id "HGNC:5764" ; level 1 ; orig_coord_info "chr1,144085628,144085676,+" ; tag pseudo_consens basic ; transcript_id "SNX27--IGKV1OR1-1^ENST00000613775.1" ; transcript_name "IGKV1OR1-1-201" ; transcript_support_level NA ; transcript_type IG_V_pseudogene
L1 and L2 created:
SRGAP2B--LSP1P5 HAVANA gene 20113 24901 . + . FI_gene_label "LSP1P5^ENSG00000283196.2" ; ID "SRGAP2B--LSP1P5^LSP1P5^ENSG00000283196.2" ; exon_id "ENSE00003795350.1" ; exon_number 1 ; gene_id "SRGAP2B--LSP1P5^LSP1P5^ENSG00000283196.2" ; gene_name LSP1P5 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000191642.2" ; havana_transcript "OTTHUMT00000489001.1" ; level 2 ; orig_coord_info "chr2,89585550,89585652,-" ; tag RNA_Seq_supported_only basic ; transcript_id "SRGAP2B--LSP1P5^ENST00000635968.1" ; transcript_name "LSP1P5-201" ; transcript_support_level 5 ; transcript_type processed_transcript
SRGAP2B--LSP1P5 HAVANA RNA 20113 24901 . + . FI_gene_label "LSP1P5^ENSG00000283196.2" ; ID "SRGAP2B--LSP1P5^ENST00000635968.1" ; Parent "SRGAP2B--LSP1P5^LSP1P5^ENSG00000283196.2" ; exon_id "ENSE00003795350.1" ; exon_number 1 ; gene_id "SRGAP2B--LSP1P5^LSP1P5^ENSG00000283196.2" ; gene_name LSP1P5 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000191642.2" ; havana_transcript "OTTHUMT00000489001.1" ; level 2 ; orig_coord_info "chr2,89585550,89585652,-" ; tag RNA_Seq_supported_only basic ; transcript_id "SRGAP2B--LSP1P5^ENST00000635968.1" ; transcript_name "LSP1P5-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
THEM4--AC253572.1 HAVANA gene 16000 17311 . + . FI_gene_label "AC253572.1^ENSG00000287979.1" ; ID "THEM4--AC253572.1^AC253572.1^ENSG00000287979.1" ; exon_id "ENSE00003857834.1" ; exon_number 1 ; gene_id "THEM4--AC253572.1^AC253572.1^ENSG00000287979.1" ; gene_name "AC253572.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194126.1" ; havana_transcript "OTTHUMT00000511484.1" ; level 2 ; orig_coord_info "chr1,120849674,120850985,-" ; tag basic TAGENE ; transcript_id "THEM4--AC253572.1^ENST00000664186.1" ; transcript_name "AC253572.1-201" ; transcript_type lncRNA
THEM4--AC253572.1 HAVANA RNA 16000 17311 . + . FI_gene_label "AC253572.1^ENSG00000287979.1" ; ID "THEM4--AC253572.1^ENST00000664186.1" ; Parent "THEM4--AC253572.1^AC253572.1^ENSG00000287979.1" ; exon_id "ENSE00003857834.1" ; exon_number 1 ; gene_id "THEM4--AC253572.1^AC253572.1^ENSG00000287979.1" ; gene_name "AC253572.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194126.1" ; havana_transcript "OTTHUMT00000511484.1" ; level 2 ; orig_coord_info "chr1,120849674,120850985,-" ; tag basic TAGENE ; transcript_id "THEM4--AC253572.1^ENST00000664186.1" ; transcript_name "AC253572.1-201" ; transcript_type lncRNA
L1 and L2 created:
THEM4--RNVU1-19 ENSEMBL gene 16000 16166 . + . FI_gene_label "RNVU1-19^ENSG00000275538.1" ; ID "THEM4--RNVU1-19^RNVU1-19^ENSG00000275538.1" ; exon_id "ENSE00003719321.1" ; exon_number 1 ; gene_id "THEM4--RNVU1-19^RNVU1-19^ENSG00000275538.1" ; gene_name "RNVU1-19" ; gene_type snRNA ; hgnc_id "HGNC:48324" ; level 3 ; orig_coord_info "chr1,120850819,120850985,-" ; tag basic ; transcript_id "THEM4--RNVU1-19^ENST00000613023.1" ; transcript_name "RNVU1-19-201" ; transcript_support_level NA ; transcript_type snRNA
THEM4--RNVU1-19 ENSEMBL RNA 16000 16166 . + . FI_gene_label "RNVU1-19^ENSG00000275538.1" ; ID "THEM4--RNVU1-19^ENST00000613023.1" ; Parent "THEM4--RNVU1-19^RNVU1-19^ENSG00000275538.1" ; exon_id "ENSE00003719321.1" ; exon_number 1 ; gene_id "THEM4--RNVU1-19^RNVU1-19^ENSG00000275538.1" ; gene_name "RNVU1-19" ; gene_type snRNA ; hgnc_id "HGNC:48324" ; level 3 ; orig_coord_info "chr1,120850819,120850985,-" ; tag basic ; transcript_id "THEM4--RNVU1-19^ENST00000613023.1" ; transcript_name "RNVU1-19-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TPTE--BAGE2 HAVANA gene 27330 39533 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "TPTE--BAGE2^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
TPTE--BAGE2 HAVANA RNA 27330 39533 . + . FI_gene_label "BAGE2^ENSG00000187172.15" ; ID "TPTE--BAGE2^ENST00000470054.5" ; Parent "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; exon_id "ENSE00001647801.1" ; exon_number 1 ; gene_id "TPTE--BAGE2^BAGE2^ENSG00000187172.15" ; gene_name BAGE2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000074128.5" ; havana_transcript "OTTHUMT00000157417.3" ; hgnc_id "HGNC:15723" ; level 2 ; orig_coord_info "chr21,10413532,10413754,+" ; tag mRNA_end_NF ; transcript_id "TPTE--BAGE2^ENST00000470054.5" ; transcript_name "BAGE2-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
UMPS--AC116050.1 HAVANA gene 17917 23695 . + . FI_gene_label "AC116050.1^ENSG00000278131.1" ; ID "UMPS--AC116050.1^AC116050.1^ENSG00000278131.1" ; exon_id "ENSE00003750531.1" ; exon_number 1 ; gene_id "UMPS--AC116050.1^AC116050.1^ENSG00000278131.1" ; gene_name "AC116050.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000155071.3" ; havana_transcript "OTTHUMT00000338340.3" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr2,91589494,91589892,+" ; tag basic ; transcript_id "UMPS--AC116050.1^ENST00000612102.1" ; transcript_name "AC116050.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
UMPS--AC116050.1 HAVANA RNA 17917 23695 . + . FI_gene_label "AC116050.1^ENSG00000278131.1" ; ID "UMPS--AC116050.1^ENST00000612102.1" ; Parent "UMPS--AC116050.1^AC116050.1^ENSG00000278131.1" ; exon_id "ENSE00003750531.1" ; exon_number 1 ; gene_id "UMPS--AC116050.1^AC116050.1^ENSG00000278131.1" ; gene_name "AC116050.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000155071.3" ; havana_transcript "OTTHUMT00000338340.3" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr2,91589494,91589892,+" ; tag basic ; transcript_id "UMPS--AC116050.1^ENST00000612102.1" ; transcript_name "AC116050.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
UMPS--AC242852.2 HAVANA gene 17917 23723 . + . FI_gene_label "AC242852.2^ENSG00000277095.1" ; ID "UMPS--AC242852.2^AC242852.2^ENSG00000277095.1" ; exon_id "ENSE00003749535.1" ; exon_number 1 ; gene_id "UMPS--AC242852.2^AC242852.2^ENSG00000277095.1" ; gene_name "AC242852.2" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188680.1" ; havana_transcript "OTTHUMT00000477887.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,143354191,143354619,+" ; tag basic ; transcript_id "UMPS--AC242852.2^ENST00000615738.1" ; transcript_name "AC242852.2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
UMPS--AC242852.2 HAVANA RNA 17917 23723 . + . FI_gene_label "AC242852.2^ENSG00000277095.1" ; ID "UMPS--AC242852.2^ENST00000615738.1" ; Parent "UMPS--AC242852.2^AC242852.2^ENSG00000277095.1" ; exon_id "ENSE00003749535.1" ; exon_number 1 ; gene_id "UMPS--AC242852.2^AC242852.2^ENSG00000277095.1" ; gene_name "AC242852.2" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188680.1" ; havana_transcript "OTTHUMT00000477887.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,143354191,143354619,+" ; tag basic ; transcript_id "UMPS--AC242852.2^ENST00000615738.1" ; transcript_name "AC242852.2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
XRN1--LINC02026 HAVANA gene 50279 57114 . + . FI_gene_label "LINC02026^ENSG00000214146.3" ; ID "XRN1--LINC02026^LINC02026^ENSG00000214146.3" ; exon_id "ENSE00001529519.1" ; exon_number 1 ; gene_id "XRN1--LINC02026^LINC02026^ENSG00000214146.3" ; gene_name LINC02026 ; gene_type lncRNA ; havana_gene "OTTHUMG00000155981.3" ; havana_transcript "OTTHUMT00000342625.1" ; hgnc_id "HGNC:52861" ; level 1 ; orig_coord_info "chr3,194003585,194003659,-" ; tag basic exp_conf ; transcript_id "XRN1--LINC02026^ENST00000397645.2" ; transcript_name "LINC02026-201" ; transcript_support_level 2 ; transcript_type lncRNA
XRN1--LINC02026 HAVANA RNA 50279 57114 . + . FI_gene_label "LINC02026^ENSG00000214146.3" ; ID "XRN1--LINC02026^ENST00000397645.2" ; Parent "XRN1--LINC02026^LINC02026^ENSG00000214146.3" ; exon_id "ENSE00001529519.1" ; exon_number 1 ; gene_id "XRN1--LINC02026^LINC02026^ENSG00000214146.3" ; gene_name LINC02026 ; gene_type lncRNA ; havana_gene "OTTHUMG00000155981.3" ; havana_transcript "OTTHUMT00000342625.1" ; hgnc_id "HGNC:52861" ; level 1 ; orig_coord_info "chr3,194003585,194003659,-" ; tag basic exp_conf ; transcript_id "XRN1--LINC02026^ENST00000397645.2" ; transcript_name "LINC02026-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
XRN1--LINC02038 HAVANA gene 50193 51642 . + . FI_gene_label "LINC02038^ENSG00000229155.1" ; ID "XRN1--LINC02038^LINC02038^ENSG00000229155.1" ; exon_id "ENSE00001745672.1" ; exon_number 1 ; gene_id "XRN1--LINC02038^LINC02038^ENSG00000229155.1" ; gene_name LINC02038 ; gene_type lncRNA ; havana_gene "OTTHUMG00000156053.1" ; havana_transcript "OTTHUMT00000342885.1" ; hgnc_id "HGNC:52878" ; level 1 ; orig_coord_info "chr3,193843652,193844009,-" ; tag basic exp_conf ; transcript_id "XRN1--LINC02038^ENST00000439074.1" ; transcript_name "LINC02038-201" ; transcript_support_level 4 ; transcript_type lncRNA
XRN1--LINC02038 HAVANA RNA 50193 51642 . + . FI_gene_label "LINC02038^ENSG00000229155.1" ; ID "XRN1--LINC02038^ENST00000439074.1" ; Parent "XRN1--LINC02038^LINC02038^ENSG00000229155.1" ; exon_id "ENSE00001745672.1" ; exon_number 1 ; gene_id "XRN1--LINC02038^LINC02038^ENSG00000229155.1" ; gene_name LINC02038 ; gene_type lncRNA ; havana_gene "OTTHUMG00000156053.1" ; havana_transcript "OTTHUMT00000342885.1" ; hgnc_id "HGNC:52878" ; level 1 ; orig_coord_info "chr3,193843652,193844009,-" ; tag basic exp_conf ; transcript_id "XRN1--LINC02038^ENST00000439074.1" ; transcript_name "LINC02038-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
ZNF148--LINC02799 HAVANA gene 26164 27489 . + . FI_gene_label "LINC02799^ENSG00000235887.2" ; ID "ZNF148--LINC02799^LINC02799^ENSG00000235887.2" ; exon_id "ENSE00001612977.1" ; exon_number 1 ; gene_id "ZNF148--LINC02799^LINC02799^ENSG00000235887.2" ; gene_name LINC02799 ; gene_type lncRNA ; havana_gene "OTTHUMG00000040701.2" ; havana_transcript "OTTHUMT00000097806.2" ; hgnc_id "HGNC:54324" ; level 2 ; orig_coord_info "chr1,143500371,143500512,-" ; tag not_best_in_genome_evidence basic ; transcript_id "ZNF148--LINC02799^ENST00000456469.1" ; transcript_name "LINC02799-201" ; transcript_support_level 5 ; transcript_type lncRNA
ZNF148--LINC02799 HAVANA RNA 26164 27489 . + . FI_gene_label "LINC02799^ENSG00000235887.2" ; ID "ZNF148--LINC02799^ENST00000456469.1" ; Parent "ZNF148--LINC02799^LINC02799^ENSG00000235887.2" ; exon_id "ENSE00001612977.1" ; exon_number 1 ; gene_id "ZNF148--LINC02799^LINC02799^ENSG00000235887.2" ; gene_name LINC02799 ; gene_type lncRNA ; havana_gene "OTTHUMG00000040701.2" ; havana_transcript "OTTHUMT00000097806.2" ; hgnc_id "HGNC:54324" ; level 2 ; orig_coord_info "chr1,143500371,143500512,-" ; tag not_best_in_genome_evidence basic ; transcript_id "ZNF148--LINC02799^ENST00000456469.1" ; transcript_name "LINC02799-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
ZNF816--AC005597.1 HAVANA gene 11597 13016 . + . FI_gene_label "AC005597.1^ENSG00000267223.1" ; ID "ZNF816--AC005597.1^AC005597.1^ENSG00000267223.1" ; exon_id "ENSE00002749156.1" ; exon_number 1 ; gene_id "ZNF816--AC005597.1^AC005597.1^ENSG00000267223.1" ; gene_name "AC005597.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000182111.1" ; havana_transcript "OTTHUMT00000459509.1" ; level 2 ; orig_coord_info "chr19,30228421,30228715,-" ; tag basic ; transcript_id "ZNF816--AC005597.1^ENST00000588092.1" ; transcript_name "AC005597.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
ZNF816--AC005597.1 HAVANA RNA 11597 13016 . + . FI_gene_label "AC005597.1^ENSG00000267223.1" ; ID "ZNF816--AC005597.1^ENST00000588092.1" ; Parent "ZNF816--AC005597.1^AC005597.1^ENSG00000267223.1" ; exon_id "ENSE00002749156.1" ; exon_number 1 ; gene_id "ZNF816--AC005597.1^AC005597.1^ENSG00000267223.1" ; gene_name "AC005597.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000182111.1" ; havana_transcript "OTTHUMT00000459509.1" ; level 2 ; orig_coord_info "chr19,30228421,30228715,-" ; tag basic ; transcript_id "ZNF816--AC005597.1^ENST00000588092.1" ; transcript_name "AC005597.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
ZNF816--AC008507.5 HAVANA gene 11597 14272 . + . FI_gene_label "AC008507.5^ENSG00000288072.1" ; ID "ZNF816--AC008507.5^AC008507.5^ENSG00000288072.1" ; exon_id "ENSE00003883072.1" ; exon_number 1 ; gene_id "ZNF816--AC008507.5^AC008507.5^ENSG00000288072.1" ; gene_name "AC008507.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194093.1" ; havana_transcript "OTTHUMT00000510726.1" ; level 2 ; orig_coord_info "chr19,30078133,30078252,+" ; tag basic TAGENE ; transcript_id "ZNF816--AC008507.5^ENST00000660929.1" ; transcript_name "AC008507.5-201" ; transcript_type lncRNA
ZNF816--AC008507.5 HAVANA RNA 11597 14272 . + . FI_gene_label "AC008507.5^ENSG00000288072.1" ; ID "ZNF816--AC008507.5^ENST00000660929.1" ; Parent "ZNF816--AC008507.5^AC008507.5^ENSG00000288072.1" ; exon_id "ENSE00003883072.1" ; exon_number 1 ; gene_id "ZNF816--AC008507.5^AC008507.5^ENSG00000288072.1" ; gene_name "AC008507.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194093.1" ; havana_transcript "OTTHUMT00000510726.1" ; level 2 ; orig_coord_info "chr19,30078133,30078252,+" ; tag basic TAGENE ; transcript_id "ZNF816--AC008507.5^ENST00000660929.1" ; transcript_name "AC008507.5-201" ; transcript_type lncRNA
1864 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 1 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
4066 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 1 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 145 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 2 second) ------
GFF3 file parsed