Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/45e986371be9a37b017c7d8bb67dba/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/45e986371be9a37b017c7d8bb67dba/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/9742a23f2a3c7761b1ce7d9ad23ac5/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGc-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bGc-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:18:48.162 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:18:48 GMT 2026] MarkDuplicates --INPUT 659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGc-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bGc-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:18:48 GMT 2026] Executing as ?@nf-1345e986371be9a37b017c7d8bb67dba-27579-m7mtg on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:18:48 MarkDuplicates Start of doWork freeMemory: 105493096; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:18:48 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:18:48 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:18:52 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 2s. Last read position: chr1:1,439,343
INFO 2026-06-08 08:18:52 MarkDuplicates Tracking 2890 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-08 08:18:54 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:3,506,108
INFO 2026-06-08 08:18:54 MarkDuplicates Tracking 5754 as yet unmatched pairs. 223 records in RAM.
INFO 2026-06-08 08:18:57 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:8,358,431
INFO 2026-06-08 08:18:57 MarkDuplicates Tracking 8254 as yet unmatched pairs. 157 records in RAM.
INFO 2026-06-08 08:18:59 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:10,653,487
INFO 2026-06-08 08:18:59 MarkDuplicates Tracking 10709 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-08 08:19:01 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:13,780,790
INFO 2026-06-08 08:19:01 MarkDuplicates Tracking 13606 as yet unmatched pairs. 379 records in RAM.
INFO 2026-06-08 08:19:03 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:16,758,035
INFO 2026-06-08 08:19:03 MarkDuplicates Tracking 15625 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 08:19:05 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:19,657,416
INFO 2026-06-08 08:19:05 MarkDuplicates Tracking 18110 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:19:07 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:21,833,835
INFO 2026-06-08 08:19:07 MarkDuplicates Tracking 21205 as yet unmatched pairs. 397 records in RAM.
INFO 2026-06-08 08:19:09 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:22,086,793
INFO 2026-06-08 08:19:09 MarkDuplicates Tracking 24103 as yet unmatched pairs. 528 records in RAM.
INFO 2026-06-08 08:19:12 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:23,692,690
INFO 2026-06-08 08:19:12 MarkDuplicates Tracking 27055 as yet unmatched pairs. 946 records in RAM.
INFO 2026-06-08 08:19:13 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:26,296,919
INFO 2026-06-08 08:19:13 MarkDuplicates Tracking 28619 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 08:19:16 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:27,410,096
INFO 2026-06-08 08:19:16 MarkDuplicates Tracking 31639 as yet unmatched pairs. 642 records in RAM.
INFO 2026-06-08 08:19:18 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:30,741,685
INFO 2026-06-08 08:19:18 MarkDuplicates Tracking 34378 as yet unmatched pairs. 799 records in RAM.
INFO 2026-06-08 08:19:20 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:32,695,476
INFO 2026-06-08 08:19:20 MarkDuplicates Tracking 36124 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 08:19:21 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:35,888,575
INFO 2026-06-08 08:19:21 MarkDuplicates Tracking 38648 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-08 08:19:23 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:39,295,810
INFO 2026-06-08 08:19:23 MarkDuplicates Tracking 42955 as yet unmatched pairs. 2018 records in RAM.
INFO 2026-06-08 08:19:25 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:39,422,407
INFO 2026-06-08 08:19:25 MarkDuplicates Tracking 43622 as yet unmatched pairs. 458 records in RAM.
INFO 2026-06-08 08:19:26 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:40,067,639
INFO 2026-06-08 08:19:26 MarkDuplicates Tracking 45849 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:19:28 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:43,443,026
INFO 2026-06-08 08:19:28 MarkDuplicates Tracking 48244 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 08:19:30 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:45,660,291
INFO 2026-06-08 08:19:30 MarkDuplicates Tracking 50641 as yet unmatched pairs. 24 records in RAM.
INFO 2026-06-08 08:19:32 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:47,372,954
INFO 2026-06-08 08:19:32 MarkDuplicates Tracking 53509 as yet unmatched pairs. 395 records in RAM.
INFO 2026-06-08 08:19:34 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:53,828,143
INFO 2026-06-08 08:19:34 MarkDuplicates Tracking 55697 as yet unmatched pairs. 67 records in RAM.
INFO 2026-06-08 08:19:36 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:61,775,229
INFO 2026-06-08 08:19:36 MarkDuplicates Tracking 58458 as yet unmatched pairs. 311 records in RAM.
INFO 2026-06-08 08:19:38 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:74,710,145
INFO 2026-06-08 08:19:38 MarkDuplicates Tracking 60756 as yet unmatched pairs. 255 records in RAM.
INFO 2026-06-08 08:19:41 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:87,340,050
INFO 2026-06-08 08:19:41 MarkDuplicates Tracking 62908 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:19:43 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:94,899,390
INFO 2026-06-08 08:19:43 MarkDuplicates Tracking 65452 as yet unmatched pairs. 295 records in RAM.
INFO 2026-06-08 08:19:45 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:109,251,823
INFO 2026-06-08 08:19:45 MarkDuplicates Tracking 67286 as yet unmatched pairs. 63 records in RAM.
INFO 2026-06-08 08:19:47 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:112,694,476
INFO 2026-06-08 08:19:47 MarkDuplicates Tracking 69854 as yet unmatched pairs. 101 records in RAM.
INFO 2026-06-08 08:19:49 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:114,570,724
INFO 2026-06-08 08:19:49 MarkDuplicates Tracking 72227 as yet unmatched pairs. 224 records in RAM.
INFO 2026-06-08 08:19:51 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:116,404,459
INFO 2026-06-08 08:19:51 MarkDuplicates Tracking 74609 as yet unmatched pairs. 201 records in RAM.
INFO 2026-06-08 08:19:53 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:119,955,132
INFO 2026-06-08 08:19:53 MarkDuplicates Tracking 78480 as yet unmatched pairs. 1592 records in RAM.
INFO 2026-06-08 08:19:54 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:145,395,117
INFO 2026-06-08 08:19:54 MarkDuplicates Tracking 78467 as yet unmatched pairs. 75 records in RAM.
INFO 2026-06-08 08:19:56 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:146,088,481
INFO 2026-06-08 08:19:56 MarkDuplicates Tracking 80551 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:19:57 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:147,215,866
INFO 2026-06-08 08:19:57 MarkDuplicates Tracking 86275 as yet unmatched pairs. 4210 records in RAM.
INFO 2026-06-08 08:19:59 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:149,071,622
INFO 2026-06-08 08:19:59 MarkDuplicates Tracking 83565 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-08 08:20:01 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:150,497,542
INFO 2026-06-08 08:20:01 MarkDuplicates Tracking 85369 as yet unmatched pairs. 184 records in RAM.
INFO 2026-06-08 08:20:02 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:151,132,410
INFO 2026-06-08 08:20:02 MarkDuplicates Tracking 87753 as yet unmatched pairs. 46 records in RAM.
INFO 2026-06-08 08:20:05 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:151,983,282
INFO 2026-06-08 08:20:05 MarkDuplicates Tracking 91186 as yet unmatched pairs. 912 records in RAM.
INFO 2026-06-08 08:20:07 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:153,810,252
INFO 2026-06-08 08:20:07 MarkDuplicates Tracking 92978 as yet unmatched pairs. 318 records in RAM.
INFO 2026-06-08 08:20:08 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:154,237,056
INFO 2026-06-08 08:20:08 MarkDuplicates Tracking 94947 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-08 08:20:10 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:155,054,394
INFO 2026-06-08 08:20:10 MarkDuplicates Tracking 97287 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:20:12 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:155,188,382
INFO 2026-06-08 08:20:12 MarkDuplicates Tracking 100757 as yet unmatched pairs. 1283 records in RAM.
INFO 2026-06-08 08:20:14 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:155,190,768
INFO 2026-06-08 08:20:14 MarkDuplicates Tracking 101222 as yet unmatched pairs. 608 records in RAM.
INFO 2026-06-08 08:20:15 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:155,216,993
INFO 2026-06-08 08:20:15 MarkDuplicates Tracking 102556 as yet unmatched pairs. 39 records in RAM.
INFO 2026-06-08 08:20:17 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:155,962,213
INFO 2026-06-08 08:20:17 MarkDuplicates Tracking 104859 as yet unmatched pairs. 160 records in RAM.
INFO 2026-06-08 08:20:19 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:156,468,859
INFO 2026-06-08 08:20:19 MarkDuplicates Tracking 107823 as yet unmatched pairs. 136 records in RAM.
INFO 2026-06-08 08:20:21 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:160,239,717
INFO 2026-06-08 08:20:21 MarkDuplicates Tracking 110518 as yet unmatched pairs. 416 records in RAM.
INFO 2026-06-08 08:20:22 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:161,542,676
INFO 2026-06-08 08:20:22 MarkDuplicates Tracking 112835 as yet unmatched pairs. 393 records in RAM.
INFO 2026-06-08 08:20:25 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:169,111,370
INFO 2026-06-08 08:20:25 MarkDuplicates Tracking 116906 as yet unmatched pairs. 2259 records in RAM.
INFO 2026-06-08 08:20:27 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:171,584,424
INFO 2026-06-08 08:20:27 MarkDuplicates Tracking 116972 as yet unmatched pairs. 118 records in RAM.
INFO 2026-06-08 08:20:28 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:180,154,895
INFO 2026-06-08 08:20:28 MarkDuplicates Tracking 119332 as yet unmatched pairs. 219 records in RAM.
INFO 2026-06-08 08:20:31 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:183,136,402
INFO 2026-06-08 08:20:31 MarkDuplicates Tracking 121765 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:20:33 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:186,306,967
INFO 2026-06-08 08:20:33 MarkDuplicates Tracking 124034 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:20:34 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:192,575,832
INFO 2026-06-08 08:20:34 MarkDuplicates Tracking 126207 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 08:20:36 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:201,790,708
INFO 2026-06-08 08:20:36 MarkDuplicates Tracking 128329 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:20:38 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:203,486,842
INFO 2026-06-08 08:20:38 MarkDuplicates Tracking 130905 as yet unmatched pairs. 363 records in RAM.
INFO 2026-06-08 08:20:40 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:205,799,808
INFO 2026-06-08 08:20:40 MarkDuplicates Tracking 133005 as yet unmatched pairs. 128 records in RAM.
INFO 2026-06-08 08:20:42 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:207,022,652
INFO 2026-06-08 08:20:42 MarkDuplicates Tracking 135573 as yet unmatched pairs. 289 records in RAM.
INFO 2026-06-08 08:20:43 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:207,354,023
INFO 2026-06-08 08:20:43 MarkDuplicates Tracking 138582 as yet unmatched pairs. 921 records in RAM.
INFO 2026-06-08 08:20:45 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:212,791,948
INFO 2026-06-08 08:20:45 MarkDuplicates Tracking 140073 as yet unmatched pairs. 82 records in RAM.
INFO 2026-06-08 08:20:48 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:223,717,766
INFO 2026-06-08 08:20:48 MarkDuplicates Tracking 143106 as yet unmatched pairs. 738 records in RAM.
INFO 2026-06-08 08:20:50 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:225,845,276
INFO 2026-06-08 08:20:50 MarkDuplicates Tracking 145399 as yet unmatched pairs. 559 records in RAM.
INFO 2026-06-08 08:20:52 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:228,317,980
INFO 2026-06-08 08:20:52 MarkDuplicates Tracking 147379 as yet unmatched pairs. 32 records in RAM.
INFO 2026-06-08 08:20:54 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:235,119,890
INFO 2026-06-08 08:20:54 MarkDuplicates Tracking 150411 as yet unmatched pairs. 203 records in RAM.
INFO 2026-06-08 08:20:55 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr1:244,054,114
INFO 2026-06-08 08:20:55 MarkDuplicates Tracking 152676 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 08:20:59 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 3s. Last read position: chr2:3,575,620
INFO 2026-06-08 08:20:59 MarkDuplicates Tracking 155699 as yet unmatched pairs. 154922 records in RAM.
INFO 2026-06-08 08:21:00 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:17,931,184
INFO 2026-06-08 08:21:00 MarkDuplicates Tracking 157506 as yet unmatched pairs. 156713 records in RAM.
INFO 2026-06-08 08:21:02 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:24,658,738
INFO 2026-06-08 08:21:02 MarkDuplicates Tracking 160495 as yet unmatched pairs. 159684 records in RAM.
INFO 2026-06-08 08:21:04 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:27,225,832
INFO 2026-06-08 08:21:04 MarkDuplicates Tracking 162637 as yet unmatched pairs. 161820 records in RAM.
INFO 2026-06-08 08:21:06 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:30,234,404
INFO 2026-06-08 08:21:06 MarkDuplicates Tracking 165851 as yet unmatched pairs. 165018 records in RAM.
INFO 2026-06-08 08:21:08 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:21:08 MarkDuplicates Tracking 258053 as yet unmatched pairs. 160630 records in RAM.
INFO 2026-06-08 08:21:10 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:21:10 MarkDuplicates Tracking 938079 as yet unmatched pairs. 126213 records in RAM.
INFO 2026-06-08 08:21:12 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:21:12 MarkDuplicates Tracking 1280105 as yet unmatched pairs. 108419 records in RAM.
INFO 2026-06-08 08:21:13 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:21:13 MarkDuplicates Tracking 1286094 as yet unmatched pairs. 108184 records in RAM.
INFO 2026-06-08 08:21:15 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:36,988,802
INFO 2026-06-08 08:21:15 MarkDuplicates Tracking 1344069 as yet unmatched pairs. 103720 records in RAM.
INFO 2026-06-08 08:21:17 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,701
INFO 2026-06-08 08:21:17 MarkDuplicates Tracking 1342142 as yet unmatched pairs. 101780 records in RAM.
INFO 2026-06-08 08:21:18 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:46,361,072
INFO 2026-06-08 08:21:18 MarkDuplicates Tracking 1340654 as yet unmatched pairs. 100280 records in RAM.
INFO 2026-06-08 08:21:20 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:47,834,816
INFO 2026-06-08 08:21:20 MarkDuplicates Tracking 1336731 as yet unmatched pairs. 96356 records in RAM.
INFO 2026-06-08 08:21:22 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:54,649,002
INFO 2026-06-08 08:21:22 MarkDuplicates Tracking 1335460 as yet unmatched pairs. 95067 records in RAM.
INFO 2026-06-08 08:21:24 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:59,188,199
INFO 2026-06-08 08:21:24 MarkDuplicates Tracking 1331684 as yet unmatched pairs. 91268 records in RAM.
INFO 2026-06-08 08:21:25 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:68,162,605
INFO 2026-06-08 08:21:25 MarkDuplicates Tracking 1329434 as yet unmatched pairs. 89004 records in RAM.
INFO 2026-06-08 08:21:28 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:73,075,527
INFO 2026-06-08 08:21:28 MarkDuplicates Tracking 1327273 as yet unmatched pairs. 86832 records in RAM.
INFO 2026-06-08 08:21:29 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:76,445,293
INFO 2026-06-08 08:21:29 MarkDuplicates Tracking 1324628 as yet unmatched pairs. 84183 records in RAM.
INFO 2026-06-08 08:21:31 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:85,661,463
INFO 2026-06-08 08:21:31 MarkDuplicates Tracking 1330013 as yet unmatched pairs. 89552 records in RAM.
INFO 2026-06-08 08:21:33 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 2s. Last read position: chr2:85,663,709
INFO 2026-06-08 08:21:33 MarkDuplicates Tracking 1329200 as yet unmatched pairs. 88733 records in RAM.
INFO 2026-06-08 08:21:35 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:85,665,682
INFO 2026-06-08 08:21:35 MarkDuplicates Tracking 1325111 as yet unmatched pairs. 84636 records in RAM.
INFO 2026-06-08 08:21:37 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:85,848,077
INFO 2026-06-08 08:21:37 MarkDuplicates Tracking 1314106 as yet unmatched pairs. 73623 records in RAM.
INFO 2026-06-08 08:21:39 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:96,023,063
INFO 2026-06-08 08:21:39 MarkDuplicates Tracking 1311925 as yet unmatched pairs. 71433 records in RAM.
INFO 2026-06-08 08:21:41 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:99,593,839
INFO 2026-06-08 08:21:41 MarkDuplicates Tracking 1309596 as yet unmatched pairs. 69091 records in RAM.
INFO 2026-06-08 08:21:43 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:108,487,720
INFO 2026-06-08 08:21:43 MarkDuplicates Tracking 1307594 as yet unmatched pairs. 67071 records in RAM.
INFO 2026-06-08 08:21:44 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:109,837,466
INFO 2026-06-08 08:21:44 MarkDuplicates Tracking 1306158 as yet unmatched pairs. 65624 records in RAM.
INFO 2026-06-08 08:21:46 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:112,401,726
INFO 2026-06-08 08:21:46 MarkDuplicates Tracking 1304734 as yet unmatched pairs. 64192 records in RAM.
INFO 2026-06-08 08:21:48 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:121,249,040
INFO 2026-06-08 08:21:48 MarkDuplicates Tracking 1302593 as yet unmatched pairs. 62032 records in RAM.
INFO 2026-06-08 08:21:49 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:134,718,798
INFO 2026-06-08 08:21:49 MarkDuplicates Tracking 1299789 as yet unmatched pairs. 59212 records in RAM.
INFO 2026-06-08 08:21:51 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:151,604,773
INFO 2026-06-08 08:21:51 MarkDuplicates Tracking 1297552 as yet unmatched pairs. 56972 records in RAM.
INFO 2026-06-08 08:21:53 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:161,235,354
INFO 2026-06-08 08:21:53 MarkDuplicates Tracking 1295541 as yet unmatched pairs. 54954 records in RAM.
INFO 2026-06-08 08:21:55 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:171,517,621
INFO 2026-06-08 08:21:55 MarkDuplicates Tracking 1293008 as yet unmatched pairs. 52406 records in RAM.
INFO 2026-06-08 08:21:56 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:178,465,781
INFO 2026-06-08 08:21:56 MarkDuplicates Tracking 1290771 as yet unmatched pairs. 50163 records in RAM.
INFO 2026-06-08 08:21:58 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:182,117,260
INFO 2026-06-08 08:21:58 MarkDuplicates Tracking 1288511 as yet unmatched pairs. 47899 records in RAM.
INFO 2026-06-08 08:22:00 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:189,057,388
INFO 2026-06-08 08:22:00 MarkDuplicates Tracking 1286084 as yet unmatched pairs. 45467 records in RAM.
INFO 2026-06-08 08:22:01 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:197,089,965
INFO 2026-06-08 08:22:01 MarkDuplicates Tracking 1283733 as yet unmatched pairs. 43101 records in RAM.
INFO 2026-06-08 08:22:03 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:202,207,195
INFO 2026-06-08 08:22:03 MarkDuplicates Tracking 1281493 as yet unmatched pairs. 40849 records in RAM.
INFO 2026-06-08 08:22:05 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:206,281,889
INFO 2026-06-08 08:22:05 MarkDuplicates Tracking 1279014 as yet unmatched pairs. 38359 records in RAM.
INFO 2026-06-08 08:22:06 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:215,362,046
INFO 2026-06-08 08:22:06 MarkDuplicates Tracking 1282960 as yet unmatched pairs. 42285 records in RAM.
INFO 2026-06-08 08:22:08 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,162
INFO 2026-06-08 08:22:08 MarkDuplicates Tracking 1286010 as yet unmatched pairs. 45332 records in RAM.
INFO 2026-06-08 08:22:10 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,538
INFO 2026-06-08 08:22:10 MarkDuplicates Tracking 1279046 as yet unmatched pairs. 38367 records in RAM.
INFO 2026-06-08 08:22:12 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr2:215,383,336
INFO 2026-06-08 08:22:12 MarkDuplicates Tracking 1272595 as yet unmatched pairs. 31915 records in RAM.
INFO 2026-06-08 08:22:14 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,742
INFO 2026-06-08 08:22:14 MarkDuplicates Tracking 1277196 as yet unmatched pairs. 36509 records in RAM.
INFO 2026-06-08 08:22:15 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,642
INFO 2026-06-08 08:22:15 MarkDuplicates Tracking 1270051 as yet unmatched pairs. 29362 records in RAM.
INFO 2026-06-08 08:22:18 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:215,410,000
INFO 2026-06-08 08:22:18 MarkDuplicates Tracking 1267182 as yet unmatched pairs. 26484 records in RAM.
INFO 2026-06-08 08:22:20 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr2:215,425,119
INFO 2026-06-08 08:22:20 MarkDuplicates Tracking 1264276 as yet unmatched pairs. 23571 records in RAM.
INFO 2026-06-08 08:22:22 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:216,162,014
INFO 2026-06-08 08:22:22 MarkDuplicates Tracking 1258957 as yet unmatched pairs. 18248 records in RAM.
INFO 2026-06-08 08:22:24 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:217,848,008
INFO 2026-06-08 08:22:24 MarkDuplicates Tracking 1256549 as yet unmatched pairs. 15834 records in RAM.
INFO 2026-06-08 08:22:26 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:218,814,587
INFO 2026-06-08 08:22:26 MarkDuplicates Tracking 1253585 as yet unmatched pairs. 12861 records in RAM.
INFO 2026-06-08 08:22:27 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr2:226,908,849
INFO 2026-06-08 08:22:27 MarkDuplicates Tracking 1251040 as yet unmatched pairs. 10276 records in RAM.
INFO 2026-06-08 08:22:29 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr2:231,708,663
INFO 2026-06-08 08:22:29 MarkDuplicates Tracking 1249623 as yet unmatched pairs. 8852 records in RAM.
INFO 2026-06-08 08:22:31 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:237,357,341
INFO 2026-06-08 08:22:31 MarkDuplicates Tracking 1246456 as yet unmatched pairs. 5682 records in RAM.
INFO 2026-06-08 08:22:32 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr2:238,253,296
INFO 2026-06-08 08:22:32 MarkDuplicates Tracking 1243838 as yet unmatched pairs. 3052 records in RAM.
INFO 2026-06-08 08:22:34 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr2:241,499,307
INFO 2026-06-08 08:22:34 MarkDuplicates Tracking 1241244 as yet unmatched pairs. 440 records in RAM.
INFO 2026-06-08 08:22:36 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:9,930,450
INFO 2026-06-08 08:22:36 MarkDuplicates Tracking 1238780 as yet unmatched pairs. 68586 records in RAM.
INFO 2026-06-08 08:22:38 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:14,158,796
INFO 2026-06-08 08:22:38 MarkDuplicates Tracking 1236124 as yet unmatched pairs. 65914 records in RAM.
INFO 2026-06-08 08:22:40 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:25,636,044
INFO 2026-06-08 08:22:40 MarkDuplicates Tracking 1234037 as yet unmatched pairs. 63806 records in RAM.
INFO 2026-06-08 08:22:42 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:36,992,592
INFO 2026-06-08 08:22:42 MarkDuplicates Tracking 1231311 as yet unmatched pairs. 61069 records in RAM.
INFO 2026-06-08 08:22:43 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:40,252,513
INFO 2026-06-08 08:22:43 MarkDuplicates Tracking 1228790 as yet unmatched pairs. 58538 records in RAM.
INFO 2026-06-08 08:22:45 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:44,396,744
INFO 2026-06-08 08:22:45 MarkDuplicates Tracking 1226474 as yet unmatched pairs. 56210 records in RAM.
INFO 2026-06-08 08:22:47 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:47,411,332
INFO 2026-06-08 08:22:47 MarkDuplicates Tracking 1224001 as yet unmatched pairs. 53728 records in RAM.
INFO 2026-06-08 08:22:48 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:48,695,112
INFO 2026-06-08 08:22:48 MarkDuplicates Tracking 1221989 as yet unmatched pairs. 51703 records in RAM.
INFO 2026-06-08 08:22:50 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:49,360,133
INFO 2026-06-08 08:22:50 MarkDuplicates Tracking 1220494 as yet unmatched pairs. 50189 records in RAM.
INFO 2026-06-08 08:22:52 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:50,302,509
INFO 2026-06-08 08:22:52 MarkDuplicates Tracking 1216526 as yet unmatched pairs. 46216 records in RAM.
INFO 2026-06-08 08:22:53 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:51,994,913
INFO 2026-06-08 08:22:53 MarkDuplicates Tracking 1213908 as yet unmatched pairs. 43580 records in RAM.
INFO 2026-06-08 08:22:55 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:53,228,073
INFO 2026-06-08 08:22:55 MarkDuplicates Tracking 1211907 as yet unmatched pairs. 41569 records in RAM.
INFO 2026-06-08 08:22:57 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr3:61,742,734
INFO 2026-06-08 08:22:57 MarkDuplicates Tracking 1209475 as yet unmatched pairs. 39120 records in RAM.
INFO 2026-06-08 08:22:59 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr3:71,112,448
INFO 2026-06-08 08:22:59 MarkDuplicates Tracking 1206915 as yet unmatched pairs. 36534 records in RAM.
INFO 2026-06-08 08:23:01 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:99,848,781
INFO 2026-06-08 08:23:01 MarkDuplicates Tracking 1205184 as yet unmatched pairs. 34769 records in RAM.
INFO 2026-06-08 08:23:04 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr3:105,367,450
INFO 2026-06-08 08:23:04 MarkDuplicates Tracking 1203215 as yet unmatched pairs. 32788 records in RAM.
INFO 2026-06-08 08:23:06 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:114,380,253
INFO 2026-06-08 08:23:06 MarkDuplicates Tracking 1200638 as yet unmatched pairs. 30192 records in RAM.
INFO 2026-06-08 08:23:07 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:122,701,407
INFO 2026-06-08 08:23:07 MarkDuplicates Tracking 1198049 as yet unmatched pairs. 27598 records in RAM.
INFO 2026-06-08 08:23:09 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:125,520,028
INFO 2026-06-08 08:23:09 MarkDuplicates Tracking 1195546 as yet unmatched pairs. 25074 records in RAM.
INFO 2026-06-08 08:23:11 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:129,256,067
INFO 2026-06-08 08:23:11 MarkDuplicates Tracking 1192855 as yet unmatched pairs. 22373 records in RAM.
INFO 2026-06-08 08:23:12 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:132,675,361
INFO 2026-06-08 08:23:12 MarkDuplicates Tracking 1190281 as yet unmatched pairs. 19786 records in RAM.
INFO 2026-06-08 08:23:14 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr3:141,443,112
INFO 2026-06-08 08:23:14 MarkDuplicates Tracking 1187816 as yet unmatched pairs. 17300 records in RAM.
INFO 2026-06-08 08:23:16 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:150,410,734
INFO 2026-06-08 08:23:16 MarkDuplicates Tracking 1185476 as yet unmatched pairs. 14958 records in RAM.
INFO 2026-06-08 08:23:18 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:160,399,701
INFO 2026-06-08 08:23:18 MarkDuplicates Tracking 1182997 as yet unmatched pairs. 12469 records in RAM.
INFO 2026-06-08 08:23:20 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:172,426,727
INFO 2026-06-08 08:23:20 MarkDuplicates Tracking 1180723 as yet unmatched pairs. 10187 records in RAM.
INFO 2026-06-08 08:23:21 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:184,144,216
INFO 2026-06-08 08:23:21 MarkDuplicates Tracking 1178476 as yet unmatched pairs. 7921 records in RAM.
INFO 2026-06-08 08:23:23 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:186,081,069
INFO 2026-06-08 08:23:23 MarkDuplicates Tracking 1176894 as yet unmatched pairs. 6326 records in RAM.
INFO 2026-06-08 08:23:25 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:189,957,929
INFO 2026-06-08 08:23:25 MarkDuplicates Tracking 1173989 as yet unmatched pairs. 3407 records in RAM.
INFO 2026-06-08 08:23:26 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr3:195,882,142
INFO 2026-06-08 08:23:26 MarkDuplicates Tracking 1171867 as yet unmatched pairs. 1275 records in RAM.
INFO 2026-06-08 08:23:29 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr4:1,170,407
INFO 2026-06-08 08:23:29 MarkDuplicates Tracking 1169298 as yet unmatched pairs. 51844 records in RAM.
INFO 2026-06-08 08:23:31 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr4:2,932,747
INFO 2026-06-08 08:23:31 MarkDuplicates Tracking 1166740 as yet unmatched pairs. 49280 records in RAM.
INFO 2026-06-08 08:23:33 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:8,295,639
INFO 2026-06-08 08:23:33 MarkDuplicates Tracking 1164039 as yet unmatched pairs. 46573 records in RAM.
INFO 2026-06-08 08:23:35 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr4:24,799,783
INFO 2026-06-08 08:23:35 MarkDuplicates Tracking 1161958 as yet unmatched pairs. 44477 records in RAM.
INFO 2026-06-08 08:23:37 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr4:25,664,257
INFO 2026-06-08 08:23:37 MarkDuplicates Tracking 1161016 as yet unmatched pairs. 43529 records in RAM.
INFO 2026-06-08 08:23:39 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:25,673,130
INFO 2026-06-08 08:23:39 MarkDuplicates Tracking 1160301 as yet unmatched pairs. 42802 records in RAM.
INFO 2026-06-08 08:23:41 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,333
INFO 2026-06-08 08:23:41 MarkDuplicates Tracking 1158471 as yet unmatched pairs. 40970 records in RAM.
INFO 2026-06-08 08:23:43 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr4:39,467,573
INFO 2026-06-08 08:23:43 MarkDuplicates Tracking 1152644 as yet unmatched pairs. 35132 records in RAM.
INFO 2026-06-08 08:23:44 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr4:47,546,814
INFO 2026-06-08 08:23:44 MarkDuplicates Tracking 1150166 as yet unmatched pairs. 32641 records in RAM.
INFO 2026-06-08 08:23:46 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:54,733,070
INFO 2026-06-08 08:23:46 MarkDuplicates Tracking 1147822 as yet unmatched pairs. 30288 records in RAM.
INFO 2026-06-08 08:23:48 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:70,662,163
INFO 2026-06-08 08:23:48 MarkDuplicates Tracking 1145435 as yet unmatched pairs. 27885 records in RAM.
INFO 2026-06-08 08:23:49 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:76,739,267
INFO 2026-06-08 08:23:49 MarkDuplicates Tracking 1143090 as yet unmatched pairs. 25530 records in RAM.
INFO 2026-06-08 08:23:51 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr4:82,827,568
INFO 2026-06-08 08:23:51 MarkDuplicates Tracking 1140755 as yet unmatched pairs. 23190 records in RAM.
INFO 2026-06-08 08:23:53 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr4:86,796,895
INFO 2026-06-08 08:23:53 MarkDuplicates Tracking 1138560 as yet unmatched pairs. 20989 records in RAM.
INFO 2026-06-08 08:23:55 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr4:88,739,037
INFO 2026-06-08 08:23:55 MarkDuplicates Tracking 1136122 as yet unmatched pairs. 18546 records in RAM.
INFO 2026-06-08 08:23:57 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr4:102,267,958
INFO 2026-06-08 08:23:57 MarkDuplicates Tracking 1133715 as yet unmatched pairs. 16126 records in RAM.
INFO 2026-06-08 08:23:59 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr4:112,268,310
INFO 2026-06-08 08:23:59 MarkDuplicates Tracking 1131372 as yet unmatched pairs. 13771 records in RAM.
INFO 2026-06-08 08:24:00 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr4:122,209,265
INFO 2026-06-08 08:24:00 MarkDuplicates Tracking 1129408 as yet unmatched pairs. 11786 records in RAM.
INFO 2026-06-08 08:24:02 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr4:139,698,489
INFO 2026-06-08 08:24:02 MarkDuplicates Tracking 1126940 as yet unmatched pairs. 9313 records in RAM.
INFO 2026-06-08 08:24:04 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr4:151,099,694
INFO 2026-06-08 08:24:04 MarkDuplicates Tracking 1125972 as yet unmatched pairs. 8331 records in RAM.
INFO 2026-06-08 08:24:06 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr4:159,238,807
INFO 2026-06-08 08:24:06 MarkDuplicates Tracking 1122533 as yet unmatched pairs. 4883 records in RAM.
INFO 2026-06-08 08:24:07 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr4:183,261,088
INFO 2026-06-08 08:24:07 MarkDuplicates Tracking 1120035 as yet unmatched pairs. 2373 records in RAM.
INFO 2026-06-08 08:24:10 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr5:254,391
INFO 2026-06-08 08:24:10 MarkDuplicates Tracking 1118081 as yet unmatched pairs. 95356 records in RAM.
INFO 2026-06-08 08:24:12 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 2s. Last read position: chr5:10,254,724
INFO 2026-06-08 08:24:12 MarkDuplicates Tracking 1114862 as yet unmatched pairs. 92124 records in RAM.
INFO 2026-06-08 08:24:14 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:14,378,070
INFO 2026-06-08 08:24:14 MarkDuplicates Tracking 1113780 as yet unmatched pairs. 91034 records in RAM.
INFO 2026-06-08 08:24:16 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr5:16,763,655
INFO 2026-06-08 08:24:16 MarkDuplicates Tracking 1109938 as yet unmatched pairs. 87189 records in RAM.
INFO 2026-06-08 08:24:18 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr5:36,985,994
INFO 2026-06-08 08:24:18 MarkDuplicates Tracking 1107339 as yet unmatched pairs. 84574 records in RAM.
INFO 2026-06-08 08:24:20 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 2s. Last read position: chr5:40,945,240
INFO 2026-06-08 08:24:20 MarkDuplicates Tracking 1105303 as yet unmatched pairs. 82532 records in RAM.
INFO 2026-06-08 08:24:22 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:53,073,142
INFO 2026-06-08 08:24:22 MarkDuplicates Tracking 1102880 as yet unmatched pairs. 80094 records in RAM.
INFO 2026-06-08 08:24:24 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:64,214,069
INFO 2026-06-08 08:24:24 MarkDuplicates Tracking 1100713 as yet unmatched pairs. 77912 records in RAM.
INFO 2026-06-08 08:24:25 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:69,640,239
INFO 2026-06-08 08:24:25 MarkDuplicates Tracking 1098323 as yet unmatched pairs. 75506 records in RAM.
INFO 2026-06-08 08:24:27 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:73,503,107
INFO 2026-06-08 08:24:27 MarkDuplicates Tracking 1098046 as yet unmatched pairs. 75221 records in RAM.
INFO 2026-06-08 08:24:29 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:80,787,573
INFO 2026-06-08 08:24:29 MarkDuplicates Tracking 1094319 as yet unmatched pairs. 71480 records in RAM.
INFO 2026-06-08 08:24:31 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:90,811,125
INFO 2026-06-08 08:24:31 MarkDuplicates Tracking 1092009 as yet unmatched pairs. 69157 records in RAM.
INFO 2026-06-08 08:24:32 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:96,915,746
INFO 2026-06-08 08:24:32 MarkDuplicates Tracking 1089694 as yet unmatched pairs. 66825 records in RAM.
INFO 2026-06-08 08:24:35 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:115,253,224
INFO 2026-06-08 08:24:35 MarkDuplicates Tracking 1087600 as yet unmatched pairs. 64722 records in RAM.
INFO 2026-06-08 08:24:36 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:130,990,204
INFO 2026-06-08 08:24:36 MarkDuplicates Tracking 1085107 as yet unmatched pairs. 62217 records in RAM.
INFO 2026-06-08 08:24:38 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr5:134,714,974
INFO 2026-06-08 08:24:38 MarkDuplicates Tracking 1082948 as yet unmatched pairs. 60046 records in RAM.
INFO 2026-06-08 08:24:40 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:138,511,476
INFO 2026-06-08 08:24:40 MarkDuplicates Tracking 1080445 as yet unmatched pairs. 57539 records in RAM.
INFO 2026-06-08 08:24:42 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:140,528,529
INFO 2026-06-08 08:24:42 MarkDuplicates Tracking 1078091 as yet unmatched pairs. 55142 records in RAM.
INFO 2026-06-08 08:24:45 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr5:141,319,472
INFO 2026-06-08 08:24:45 MarkDuplicates Tracking 1075579 as yet unmatched pairs. 52625 records in RAM.
INFO 2026-06-08 08:24:47 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 2s. Last read position: chr5:142,314,674
INFO 2026-06-08 08:24:47 MarkDuplicates Tracking 1072901 as yet unmatched pairs. 49919 records in RAM.
INFO 2026-06-08 08:24:49 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 2s. Last read position: chr5:147,881,513
INFO 2026-06-08 08:24:49 MarkDuplicates Tracking 1076598 as yet unmatched pairs. 53603 records in RAM.
INFO 2026-06-08 08:24:51 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:149,980,316
INFO 2026-06-08 08:24:51 MarkDuplicates Tracking 1068082 as yet unmatched pairs. 45086 records in RAM.
INFO 2026-06-08 08:24:53 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,088
INFO 2026-06-08 08:24:53 MarkDuplicates Tracking 1073847 as yet unmatched pairs. 50846 records in RAM.
INFO 2026-06-08 08:24:55 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,204
INFO 2026-06-08 08:24:55 MarkDuplicates Tracking 1135638 as yet unmatched pairs. 112633 records in RAM.
INFO 2026-06-08 08:24:56 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,610
INFO 2026-06-08 08:24:56 MarkDuplicates Tracking 1091092 as yet unmatched pairs. 68080 records in RAM.
INFO 2026-06-08 08:24:58 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,085
INFO 2026-06-08 08:24:58 MarkDuplicates Tracking 1072986 as yet unmatched pairs. 49974 records in RAM.
INFO 2026-06-08 08:25:01 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,153
INFO 2026-06-08 08:25:01 MarkDuplicates Tracking 1088599 as yet unmatched pairs. 65582 records in RAM.
INFO 2026-06-08 08:25:02 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,910
INFO 2026-06-08 08:25:02 MarkDuplicates Tracking 1074921 as yet unmatched pairs. 51899 records in RAM.
INFO 2026-06-08 08:25:04 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr5:150,412,644
INFO 2026-06-08 08:25:04 MarkDuplicates Tracking 1050230 as yet unmatched pairs. 27200 records in RAM.
INFO 2026-06-08 08:25:05 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr5:150,650,060
INFO 2026-06-08 08:25:05 MarkDuplicates Tracking 1048452 as yet unmatched pairs. 25412 records in RAM.
INFO 2026-06-08 08:25:07 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr5:154,053,383
INFO 2026-06-08 08:25:07 MarkDuplicates Tracking 1045082 as yet unmatched pairs. 22040 records in RAM.
INFO 2026-06-08 08:25:09 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr5:163,516,556
INFO 2026-06-08 08:25:09 MarkDuplicates Tracking 1043055 as yet unmatched pairs. 20009 records in RAM.
INFO 2026-06-08 08:25:10 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,789
INFO 2026-06-08 08:25:10 MarkDuplicates Tracking 1051039 as yet unmatched pairs. 27984 records in RAM.
INFO 2026-06-08 08:25:13 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 2s. Last read position: chr5:172,770,843
INFO 2026-06-08 08:25:13 MarkDuplicates Tracking 1038702 as yet unmatched pairs. 15640 records in RAM.
INFO 2026-06-08 08:25:14 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr5:177,337,410
INFO 2026-06-08 08:25:14 MarkDuplicates Tracking 1036090 as yet unmatched pairs. 13019 records in RAM.
INFO 2026-06-08 08:25:16 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr5:179,708,348
INFO 2026-06-08 08:25:16 MarkDuplicates Tracking 1034362 as yet unmatched pairs. 11287 records in RAM.
INFO 2026-06-08 08:25:19 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr5:179,833,191
INFO 2026-06-08 08:25:19 MarkDuplicates Tracking 1031657 as yet unmatched pairs. 8577 records in RAM.
INFO 2026-06-08 08:25:20 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr5:180,590,191
INFO 2026-06-08 08:25:20 MarkDuplicates Tracking 1039079 as yet unmatched pairs. 15990 records in RAM.
INFO 2026-06-08 08:25:22 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr5:180,792,214
INFO 2026-06-08 08:25:22 MarkDuplicates Tracking 1024979 as yet unmatched pairs. 1885 records in RAM.
INFO 2026-06-08 08:25:24 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 2s. Last read position: chr6:3,850,179
INFO 2026-06-08 08:25:24 MarkDuplicates Tracking 1022114 as yet unmatched pairs. 81926 records in RAM.
INFO 2026-06-08 08:25:26 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:7,883,144
INFO 2026-06-08 08:25:26 MarkDuplicates Tracking 1019982 as yet unmatched pairs. 79782 records in RAM.
INFO 2026-06-08 08:25:28 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:16,306,346
INFO 2026-06-08 08:25:28 MarkDuplicates Tracking 1017305 as yet unmatched pairs. 77097 records in RAM.
INFO 2026-06-08 08:25:30 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:26,123,629
INFO 2026-06-08 08:25:30 MarkDuplicates Tracking 1014926 as yet unmatched pairs. 74708 records in RAM.
INFO 2026-06-08 08:25:31 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,776
INFO 2026-06-08 08:25:31 MarkDuplicates Tracking 1014167 as yet unmatched pairs. 73949 records in RAM.
INFO 2026-06-08 08:25:33 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:30,685,718
INFO 2026-06-08 08:25:33 MarkDuplicates Tracking 1010256 as yet unmatched pairs. 70035 records in RAM.
INFO 2026-06-08 08:25:35 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,612
INFO 2026-06-08 08:25:35 MarkDuplicates Tracking 1009896 as yet unmatched pairs. 69672 records in RAM.
INFO 2026-06-08 08:25:36 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:31,639,090
INFO 2026-06-08 08:25:36 MarkDuplicates Tracking 1005772 as yet unmatched pairs. 65544 records in RAM.
INFO 2026-06-08 08:25:38 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,604
INFO 2026-06-08 08:25:38 MarkDuplicates Tracking 1003432 as yet unmatched pairs. 63200 records in RAM.
INFO 2026-06-08 08:25:39 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:32,024,937
INFO 2026-06-08 08:25:39 MarkDuplicates Tracking 1002643 as yet unmatched pairs. 62408 records in RAM.
INFO 2026-06-08 08:25:41 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:32,073,914
INFO 2026-06-08 08:25:41 MarkDuplicates Tracking 1000225 as yet unmatched pairs. 59988 records in RAM.
INFO 2026-06-08 08:25:43 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:32,216,966
INFO 2026-06-08 08:25:43 MarkDuplicates Tracking 996842 as yet unmatched pairs. 56597 records in RAM.
INFO 2026-06-08 08:25:44 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:32,830,642
INFO 2026-06-08 08:25:44 MarkDuplicates Tracking 994608 as yet unmatched pairs. 54360 records in RAM.
INFO 2026-06-08 08:25:46 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr6:33,086,656
INFO 2026-06-08 08:25:46 MarkDuplicates Tracking 992117 as yet unmatched pairs. 51866 records in RAM.
INFO 2026-06-08 08:25:47 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:33,432,684
INFO 2026-06-08 08:25:47 MarkDuplicates Tracking 989494 as yet unmatched pairs. 49241 records in RAM.
INFO 2026-06-08 08:25:49 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr6:35,243,641
INFO 2026-06-08 08:25:49 MarkDuplicates Tracking 986796 as yet unmatched pairs. 46532 records in RAM.
INFO 2026-06-08 08:25:51 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr6:37,008,958
INFO 2026-06-08 08:25:51 MarkDuplicates Tracking 984491 as yet unmatched pairs. 44215 records in RAM.
INFO 2026-06-08 08:25:53 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr6:41,742,326
INFO 2026-06-08 08:25:53 MarkDuplicates Tracking 987303 as yet unmatched pairs. 47016 records in RAM.
INFO 2026-06-08 08:25:55 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 2s. Last read position: chr6:43,047,002
INFO 2026-06-08 08:25:55 MarkDuplicates Tracking 979465 as yet unmatched pairs. 39174 records in RAM.
INFO 2026-06-08 08:25:58 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr6:44,250,518
INFO 2026-06-08 08:25:58 MarkDuplicates Tracking 977455 as yet unmatched pairs. 37156 records in RAM.
INFO 2026-06-08 08:26:00 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr6:51,748,342
INFO 2026-06-08 08:26:00 MarkDuplicates Tracking 974486 as yet unmatched pairs. 34174 records in RAM.
INFO 2026-06-08 08:26:01 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr6:56,607,630
INFO 2026-06-08 08:26:01 MarkDuplicates Tracking 972596 as yet unmatched pairs. 32278 records in RAM.
INFO 2026-06-08 08:26:03 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr6:75,241,218
INFO 2026-06-08 08:26:03 MarkDuplicates Tracking 970073 as yet unmatched pairs. 29739 records in RAM.
INFO 2026-06-08 08:26:05 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr6:89,081,419
INFO 2026-06-08 08:26:05 MarkDuplicates Tracking 968466 as yet unmatched pairs. 28120 records in RAM.
INFO 2026-06-08 08:26:06 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr6:108,664,096
INFO 2026-06-08 08:26:06 MarkDuplicates Tracking 965854 as yet unmatched pairs. 25489 records in RAM.
INFO 2026-06-08 08:26:08 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr6:117,288,545
INFO 2026-06-08 08:26:08 MarkDuplicates Tracking 963650 as yet unmatched pairs. 23269 records in RAM.
INFO 2026-06-08 08:26:10 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr6:117,998,959
INFO 2026-06-08 08:26:10 MarkDuplicates Tracking 960977 as yet unmatched pairs. 20588 records in RAM.
INFO 2026-06-08 08:26:12 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr6:130,869,812
INFO 2026-06-08 08:26:12 MarkDuplicates Tracking 958921 as yet unmatched pairs. 18518 records in RAM.
INFO 2026-06-08 08:26:14 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr6:137,203,575
INFO 2026-06-08 08:26:14 MarkDuplicates Tracking 956634 as yet unmatched pairs. 16217 records in RAM.
INFO 2026-06-08 08:26:15 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr6:143,941,641
INFO 2026-06-08 08:26:15 MarkDuplicates Tracking 953684 as yet unmatched pairs. 13263 records in RAM.
INFO 2026-06-08 08:26:17 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr6:149,793,556
INFO 2026-06-08 08:26:17 MarkDuplicates Tracking 951594 as yet unmatched pairs. 11163 records in RAM.
INFO 2026-06-08 08:26:19 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr6:152,721,967
INFO 2026-06-08 08:26:19 MarkDuplicates Tracking 949197 as yet unmatched pairs. 8763 records in RAM.
INFO 2026-06-08 08:26:21 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,352
INFO 2026-06-08 08:26:21 MarkDuplicates Tracking 949049 as yet unmatched pairs. 8608 records in RAM.
INFO 2026-06-08 08:26:23 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr6:160,010,712
INFO 2026-06-08 08:26:23 MarkDuplicates Tracking 944354 as yet unmatched pairs. 3913 records in RAM.
INFO 2026-06-08 08:26:25 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 2s. Last read position: chr6:167,962,444
INFO 2026-06-08 08:26:25 MarkDuplicates Tracking 941747 as yet unmatched pairs. 1301 records in RAM.
INFO 2026-06-08 08:26:28 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 2s. Last read position: chr7:2,374,564
INFO 2026-06-08 08:26:28 MarkDuplicates Tracking 938979 as yet unmatched pairs. 65327 records in RAM.
INFO 2026-06-08 08:27:32 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 63s. Last read position: chr7:5,421,200
INFO 2026-06-08 08:27:32 MarkDuplicates Tracking 936110 as yet unmatched pairs. 62443 records in RAM.
INFO 2026-06-08 08:27:34 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr7:5,529,302
INFO 2026-06-08 08:27:34 MarkDuplicates Tracking 938964 as yet unmatched pairs. 65294 records in RAM.
INFO 2026-06-08 08:27:36 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr7:13,931,668
INFO 2026-06-08 08:27:36 MarkDuplicates Tracking 931348 as yet unmatched pairs. 57672 records in RAM.
INFO 2026-06-08 08:27:37 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr7:26,193,267
INFO 2026-06-08 08:27:37 MarkDuplicates Tracking 928699 as yet unmatched pairs. 55017 records in RAM.
INFO 2026-06-08 08:27:39 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 2s. Last read position: chr7:32,988,562
INFO 2026-06-08 08:27:39 MarkDuplicates Tracking 926308 as yet unmatched pairs. 52615 records in RAM.
INFO 2026-06-08 08:27:41 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr7:44,073,917
INFO 2026-06-08 08:27:41 MarkDuplicates Tracking 923844 as yet unmatched pairs. 50140 records in RAM.
INFO 2026-06-08 08:27:43 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr7:44,697,002
INFO 2026-06-08 08:27:43 MarkDuplicates Tracking 921461 as yet unmatched pairs. 47749 records in RAM.
INFO 2026-06-08 08:27:45 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr7:55,154,015
INFO 2026-06-08 08:27:45 MarkDuplicates Tracking 918854 as yet unmatched pairs. 45134 records in RAM.
INFO 2026-06-08 08:27:47 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr7:66,633,333
INFO 2026-06-08 08:27:47 MarkDuplicates Tracking 916305 as yet unmatched pairs. 42578 records in RAM.
INFO 2026-06-08 08:27:48 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,631
INFO 2026-06-08 08:27:48 MarkDuplicates Tracking 914968 as yet unmatched pairs. 41239 records in RAM.
INFO 2026-06-08 08:27:50 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr7:74,736,662
INFO 2026-06-08 08:27:50 MarkDuplicates Tracking 912194 as yet unmatched pairs. 38460 records in RAM.
INFO 2026-06-08 08:27:51 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr7:76,058,007
INFO 2026-06-08 08:27:51 MarkDuplicates Tracking 910664 as yet unmatched pairs. 36929 records in RAM.
INFO 2026-06-08 08:27:53 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr7:80,744,998
INFO 2026-06-08 08:27:53 MarkDuplicates Tracking 908399 as yet unmatched pairs. 34653 records in RAM.
INFO 2026-06-08 08:27:55 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 2s. Last read position: chr7:92,102,745
INFO 2026-06-08 08:27:55 MarkDuplicates Tracking 906808 as yet unmatched pairs. 33053 records in RAM.
INFO 2026-06-08 08:27:57 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 2s. Last read position: chr7:95,111,300
INFO 2026-06-08 08:27:57 MarkDuplicates Tracking 903722 as yet unmatched pairs. 29964 records in RAM.
INFO 2026-06-08 08:27:59 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr7:99,385,712
INFO 2026-06-08 08:27:59 MarkDuplicates Tracking 901485 as yet unmatched pairs. 27722 records in RAM.
INFO 2026-06-08 08:28:01 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr7:100,576,259
INFO 2026-06-08 08:28:01 MarkDuplicates Tracking 898689 as yet unmatched pairs. 24919 records in RAM.
INFO 2026-06-08 08:28:03 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr7:102,353,346
INFO 2026-06-08 08:28:03 MarkDuplicates Tracking 896084 as yet unmatched pairs. 22309 records in RAM.
INFO 2026-06-08 08:28:04 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr7:105,040,890
INFO 2026-06-08 08:28:04 MarkDuplicates Tracking 896167 as yet unmatched pairs. 22387 records in RAM.
INFO 2026-06-08 08:28:06 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr7:107,978,132
INFO 2026-06-08 08:28:06 MarkDuplicates Tracking 893029 as yet unmatched pairs. 19247 records in RAM.
INFO 2026-06-08 08:28:07 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr7:120,788,684
INFO 2026-06-08 08:28:07 MarkDuplicates Tracking 890491 as yet unmatched pairs. 16698 records in RAM.
INFO 2026-06-08 08:28:09 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 2s. Last read position: chr7:128,091,848
INFO 2026-06-08 08:28:09 MarkDuplicates Tracking 888254 as yet unmatched pairs. 14458 records in RAM.
INFO 2026-06-08 08:28:11 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 2s. Last read position: chr7:134,965,306
INFO 2026-06-08 08:28:11 MarkDuplicates Tracking 886257 as yet unmatched pairs. 12448 records in RAM.
INFO 2026-06-08 08:28:13 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr7:139,028,733
INFO 2026-06-08 08:28:13 MarkDuplicates Tracking 883467 as yet unmatched pairs. 9658 records in RAM.
INFO 2026-06-08 08:28:15 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr7:142,772,157
INFO 2026-06-08 08:28:15 MarkDuplicates Tracking 880986 as yet unmatched pairs. 7161 records in RAM.
INFO 2026-06-08 08:28:16 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr7:149,028,322
INFO 2026-06-08 08:28:16 MarkDuplicates Tracking 879097 as yet unmatched pairs. 5265 records in RAM.
INFO 2026-06-08 08:28:19 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 2s. Last read position: chr7:151,349,071
INFO 2026-06-08 08:28:19 MarkDuplicates Tracking 876244 as yet unmatched pairs. 2402 records in RAM.
INFO 2026-06-08 08:28:20 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr7:158,913,082
INFO 2026-06-08 08:28:20 MarkDuplicates Tracking 873973 as yet unmatched pairs. 118 records in RAM.
INFO 2026-06-08 08:28:23 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr8:13,132,880
INFO 2026-06-08 08:28:23 MarkDuplicates Tracking 871595 as yet unmatched pairs. 54196 records in RAM.
INFO 2026-06-08 08:28:24 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr8:20,211,306
INFO 2026-06-08 08:28:24 MarkDuplicates Tracking 869335 as yet unmatched pairs. 51924 records in RAM.
INFO 2026-06-08 08:28:26 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr8:22,163,110
INFO 2026-06-08 08:28:26 MarkDuplicates Tracking 880154 as yet unmatched pairs. 62743 records in RAM.
INFO 2026-06-08 08:28:28 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr8:22,163,888
INFO 2026-06-08 08:28:28 MarkDuplicates Tracking 872807 as yet unmatched pairs. 55394 records in RAM.
INFO 2026-06-08 08:28:30 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr8:22,247,857
INFO 2026-06-08 08:28:30 MarkDuplicates Tracking 860761 as yet unmatched pairs. 43346 records in RAM.
INFO 2026-06-08 08:28:31 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr8:23,289,120
INFO 2026-06-08 08:28:31 MarkDuplicates Tracking 858311 as yet unmatched pairs. 40890 records in RAM.
INFO 2026-06-08 08:28:33 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr8:27,921,609
INFO 2026-06-08 08:28:33 MarkDuplicates Tracking 855825 as yet unmatched pairs. 38396 records in RAM.
INFO 2026-06-08 08:28:35 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr8:37,835,588
INFO 2026-06-08 08:28:35 MarkDuplicates Tracking 853465 as yet unmatched pairs. 36022 records in RAM.
INFO 2026-06-08 08:28:36 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr8:38,787,712
INFO 2026-06-08 08:28:36 MarkDuplicates Tracking 854791 as yet unmatched pairs. 37343 records in RAM.
INFO 2026-06-08 08:28:39 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 2s. Last read position: chr8:38,952,273
INFO 2026-06-08 08:28:39 MarkDuplicates Tracking 849028 as yet unmatched pairs. 31569 records in RAM.
INFO 2026-06-08 08:28:41 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,477
INFO 2026-06-08 08:28:41 MarkDuplicates Tracking 847687 as yet unmatched pairs. 30219 records in RAM.
INFO 2026-06-08 08:28:43 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr8:58,416,930
INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 843666 as yet unmatched pairs. 26189 records in RAM.
INFO 2026-06-08 08:28:45 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr8:70,144,360
INFO 2026-06-08 08:28:45 MarkDuplicates Tracking 841531 as yet unmatched pairs. 24039 records in RAM.
INFO 2026-06-08 08:28:47 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr8:86,548,363
INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 839808 as yet unmatched pairs. 22306 records in RAM.
INFO 2026-06-08 08:28:48 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr8:99,442,470
INFO 2026-06-08 08:28:48 MarkDuplicates Tracking 837146 as yet unmatched pairs. 19638 records in RAM.
INFO 2026-06-08 08:28:50 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr8:102,652,168
INFO 2026-06-08 08:28:50 MarkDuplicates Tracking 834903 as yet unmatched pairs. 17392 records in RAM.
INFO 2026-06-08 08:28:52 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr8:119,583,784
INFO 2026-06-08 08:28:52 MarkDuplicates Tracking 832443 as yet unmatched pairs. 14921 records in RAM.
INFO 2026-06-08 08:28:54 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr8:131,976,054
INFO 2026-06-08 08:28:54 MarkDuplicates Tracking 829847 as yet unmatched pairs. 12315 records in RAM.
INFO 2026-06-08 08:28:55 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,567,664
INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 827130 as yet unmatched pairs. 9587 records in RAM.
INFO 2026-06-08 08:28:57 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,502
INFO 2026-06-08 08:28:57 MarkDuplicates Tracking 825202 as yet unmatched pairs. 7652 records in RAM.
INFO 2026-06-08 08:28:58 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,918,581
INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 824038 as yet unmatched pairs. 6487 records in RAM.
INFO 2026-06-08 08:29:00 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr8:144,053,197
INFO 2026-06-08 08:29:00 MarkDuplicates Tracking 820324 as yet unmatched pairs. 2766 records in RAM.
INFO 2026-06-08 08:29:02 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr9:172,087
INFO 2026-06-08 08:29:02 MarkDuplicates Tracking 817546 as yet unmatched pairs. 54647 records in RAM.
INFO 2026-06-08 08:29:04 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr9:9,442,109
INFO 2026-06-08 08:29:04 MarkDuplicates Tracking 815307 as yet unmatched pairs. 52403 records in RAM.
INFO 2026-06-08 08:29:06 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr9:19,358,075
INFO 2026-06-08 08:29:06 MarkDuplicates Tracking 813084 as yet unmatched pairs. 50170 records in RAM.
INFO 2026-06-08 08:29:08 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr9:33,443,321
INFO 2026-06-08 08:29:08 MarkDuplicates Tracking 811656 as yet unmatched pairs. 48731 records in RAM.
INFO 2026-06-08 08:29:09 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr9:35,397,209
INFO 2026-06-08 08:29:09 MarkDuplicates Tracking 808453 as yet unmatched pairs. 45517 records in RAM.
INFO 2026-06-08 08:29:12 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr9:36,150,927
INFO 2026-06-08 08:29:12 MarkDuplicates Tracking 805609 as yet unmatched pairs. 42669 records in RAM.
INFO 2026-06-08 08:29:14 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr9:70,282,421
INFO 2026-06-08 08:29:14 MarkDuplicates Tracking 803532 as yet unmatched pairs. 40572 records in RAM.
INFO 2026-06-08 08:29:16 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr9:83,679,784
INFO 2026-06-08 08:29:16 MarkDuplicates Tracking 801507 as yet unmatched pairs. 38539 records in RAM.
INFO 2026-06-08 08:29:17 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr9:92,315,083
INFO 2026-06-08 08:29:17 MarkDuplicates Tracking 798960 as yet unmatched pairs. 35988 records in RAM.
INFO 2026-06-08 08:29:19 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr9:97,648,065
INFO 2026-06-08 08:29:19 MarkDuplicates Tracking 796422 as yet unmatched pairs. 33436 records in RAM.
INFO 2026-06-08 08:29:21 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr9:107,485,759
INFO 2026-06-08 08:29:21 MarkDuplicates Tracking 794279 as yet unmatched pairs. 31285 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr9:112,268,111
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 791971 as yet unmatched pairs. 28966 records in RAM.
INFO 2026-06-08 08:29:24 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr9:115,041,018
INFO 2026-06-08 08:29:24 MarkDuplicates Tracking 789172 as yet unmatched pairs. 26164 records in RAM.
INFO 2026-06-08 08:29:26 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr9:121,321,359
INFO 2026-06-08 08:29:26 MarkDuplicates Tracking 787142 as yet unmatched pairs. 24125 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr9:125,239,288
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 784066 as yet unmatched pairs. 21037 records in RAM.
INFO 2026-06-08 08:29:29 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr9:127,818,184
INFO 2026-06-08 08:29:29 MarkDuplicates Tracking 782028 as yet unmatched pairs. 18986 records in RAM.
INFO 2026-06-08 08:29:31 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr9:128,611,712
INFO 2026-06-08 08:29:31 MarkDuplicates Tracking 778973 as yet unmatched pairs. 15925 records in RAM.
INFO 2026-06-08 08:29:33 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 2s. Last read position: chr9:130,835,380
INFO 2026-06-08 08:29:33 MarkDuplicates Tracking 776343 as yet unmatched pairs. 13293 records in RAM.
INFO 2026-06-08 08:29:35 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr9:132,283,349
INFO 2026-06-08 08:29:35 MarkDuplicates Tracking 773622 as yet unmatched pairs. 10568 records in RAM.
INFO 2026-06-08 08:29:37 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr9:134,050,444
INFO 2026-06-08 08:29:37 MarkDuplicates Tracking 771491 as yet unmatched pairs. 8430 records in RAM.
INFO 2026-06-08 08:29:39 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr9:136,476,238
INFO 2026-06-08 08:29:39 MarkDuplicates Tracking 768783 as yet unmatched pairs. 5715 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr9:136,980,836
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 766228 as yet unmatched pairs. 3147 records in RAM.
INFO 2026-06-08 08:29:42 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr10:413,912
INFO 2026-06-08 08:29:42 MarkDuplicates Tracking 762927 as yet unmatched pairs. 48496 records in RAM.
INFO 2026-06-08 08:29:44 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr10:7,798,985
INFO 2026-06-08 08:29:44 MarkDuplicates Tracking 760518 as yet unmatched pairs. 46085 records in RAM.
INFO 2026-06-08 08:29:46 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr10:17,236,302
INFO 2026-06-08 08:29:46 MarkDuplicates Tracking 761636 as yet unmatched pairs. 47186 records in RAM.
INFO 2026-06-08 08:29:47 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr10:27,219,800
INFO 2026-06-08 08:29:47 MarkDuplicates Tracking 755783 as yet unmatched pairs. 41324 records in RAM.
INFO 2026-06-08 08:29:49 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr10:32,035,659
INFO 2026-06-08 08:29:49 MarkDuplicates Tracking 754789 as yet unmatched pairs. 40324 records in RAM.
INFO 2026-06-08 08:29:51 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr10:42,567,098
INFO 2026-06-08 08:29:51 MarkDuplicates Tracking 751002 as yet unmatched pairs. 36529 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,832
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 750225 as yet unmatched pairs. 35747 records in RAM.
INFO 2026-06-08 08:29:54 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr10:50,991,422
INFO 2026-06-08 08:29:54 MarkDuplicates Tracking 747238 as yet unmatched pairs. 32749 records in RAM.
INFO 2026-06-08 08:29:56 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr10:63,207,377
INFO 2026-06-08 08:29:56 MarkDuplicates Tracking 745024 as yet unmatched pairs. 30531 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr10:71,510,092
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 742349 as yet unmatched pairs. 27843 records in RAM.
INFO 2026-06-08 08:29:59 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr10:73,797,551
INFO 2026-06-08 08:29:59 MarkDuplicates Tracking 740021 as yet unmatched pairs. 25509 records in RAM.
INFO 2026-06-08 08:30:01 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr10:79,277,279
INFO 2026-06-08 08:30:01 MarkDuplicates Tracking 737763 as yet unmatched pairs. 23246 records in RAM.
INFO 2026-06-08 08:30:02 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr10:79,612,337
INFO 2026-06-08 08:30:02 MarkDuplicates Tracking 737373 as yet unmatched pairs. 22848 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr10:86,945,370
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 733542 as yet unmatched pairs. 19007 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 2s. Last read position: chr10:91,859,570
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 731455 as yet unmatched pairs. 16911 records in RAM.
INFO 2026-06-08 08:30:09 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr10:96,560,428
INFO 2026-06-08 08:30:09 MarkDuplicates Tracking 729335 as yet unmatched pairs. 14783 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr10:101,038,585
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 726635 as yet unmatched pairs. 12079 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr10:103,438,025
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 723949 as yet unmatched pairs. 9386 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr10:113,908,349
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 721855 as yet unmatched pairs. 7289 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr10:119,892,845
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 719677 as yet unmatched pairs. 5094 records in RAM.
INFO 2026-06-08 08:30:17 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr10:122,583,082
INFO 2026-06-08 08:30:17 MarkDuplicates Tracking 717317 as yet unmatched pairs. 2727 records in RAM.
INFO 2026-06-08 08:30:19 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr10:133,283,142
INFO 2026-06-08 08:30:19 MarkDuplicates Tracking 715006 as yet unmatched pairs. 401 records in RAM.
INFO 2026-06-08 08:30:21 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 2s. Last read position: chr11:397,137
INFO 2026-06-08 08:30:21 MarkDuplicates Tracking 712631 as yet unmatched pairs. 82528 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:981,217
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 709761 as yet unmatched pairs. 79657 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:1,761,436
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 707952 as yet unmatched pairs. 77841 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:5,709,469
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 705815 as yet unmatched pairs. 75700 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr11:8,731,135
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 702187 as yet unmatched pairs. 72072 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:12,208,060
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 699667 as yet unmatched pairs. 69540 records in RAM.
INFO 2026-06-08 08:30:33 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr11:18,514,680
INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 697243 as yet unmatched pairs. 67109 records in RAM.
INFO 2026-06-08 08:30:35 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:34,082,999
INFO 2026-06-08 08:30:35 MarkDuplicates Tracking 695361 as yet unmatched pairs. 65216 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:45,924,153
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 692441 as yet unmatched pairs. 62293 records in RAM.
INFO 2026-06-08 08:30:38 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:47,573,770
INFO 2026-06-08 08:30:38 MarkDuplicates Tracking 689957 as yet unmatched pairs. 59794 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:57,600,206
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 688231 as yet unmatched pairs. 58060 records in RAM.
INFO 2026-06-08 08:30:41 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr11:60,773,475
INFO 2026-06-08 08:30:41 MarkDuplicates Tracking 685291 as yet unmatched pairs. 55120 records in RAM.
INFO 2026-06-08 08:30:43 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:62,422,309
INFO 2026-06-08 08:30:43 MarkDuplicates Tracking 684656 as yet unmatched pairs. 54466 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:62,523,174
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 681654 as yet unmatched pairs. 51459 records in RAM.
INFO 2026-06-08 08:30:46 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,326
INFO 2026-06-08 08:30:46 MarkDuplicates Tracking 680305 as yet unmatched pairs. 50110 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:62,605,097
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 676558 as yet unmatched pairs. 46362 records in RAM.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr11:64,211,736
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 673925 as yet unmatched pairs. 43727 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr11:65,111,366
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 671197 as yet unmatched pairs. 40999 records in RAM.
INFO 2026-06-08 08:30:54 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:65,582,823
INFO 2026-06-08 08:30:54 MarkDuplicates Tracking 668381 as yet unmatched pairs. 38143 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr11:66,070,637
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 665580 as yet unmatched pairs. 35339 records in RAM.
INFO 2026-06-08 08:30:58 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 2s. Last read position: chr11:67,421,067
INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 662770 as yet unmatched pairs. 32520 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr11:68,892,573
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 660292 as yet unmatched pairs. 30032 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:72,014,633
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 657972 as yet unmatched pairs. 27712 records in RAM.
INFO 2026-06-08 08:31:03 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr11:73,365,799
INFO 2026-06-08 08:31:03 MarkDuplicates Tracking 655158 as yet unmatched pairs. 24894 records in RAM.
INFO 2026-06-08 08:31:05 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr11:77,667,316
INFO 2026-06-08 08:31:05 MarkDuplicates Tracking 652588 as yet unmatched pairs. 22306 records in RAM.
INFO 2026-06-08 08:31:07 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:92,774,168
INFO 2026-06-08 08:31:07 MarkDuplicates Tracking 650217 as yet unmatched pairs. 19932 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr11:102,185,968
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 648951 as yet unmatched pairs. 18648 records in RAM.
INFO 2026-06-08 08:31:10 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr11:111,720,714
INFO 2026-06-08 08:31:10 MarkDuplicates Tracking 645591 as yet unmatched pairs. 15282 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr11:114,251,154
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 645818 as yet unmatched pairs. 15499 records in RAM.
INFO 2026-06-08 08:31:13 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr11:117,184,130
INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 641046 as yet unmatched pairs. 10723 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr11:118,628,065
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 638314 as yet unmatched pairs. 7991 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr11:120,465,274
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 636130 as yet unmatched pairs. 5799 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr11:126,271,323
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 633426 as yet unmatched pairs. 3090 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr11:130,427,668
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 631108 as yet unmatched pairs. 765 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr12:885,582
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 629052 as yet unmatched pairs. 81475 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:6,018,897
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 626451 as yet unmatched pairs. 78865 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:6,566,265
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 623332 as yet unmatched pairs. 75743 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:6,967,950
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 621022 as yet unmatched pairs. 73425 records in RAM.
INFO 2026-06-08 08:31:31 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:8,773,825
INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 618428 as yet unmatched pairs. 70827 records in RAM.
INFO 2026-06-08 08:31:32 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:9,077,827
INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 620468 as yet unmatched pairs. 72867 records in RAM.
INFO 2026-06-08 08:31:34 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:9,109,373
INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 618760 as yet unmatched pairs. 71157 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:11,890,985
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 611683 as yet unmatched pairs. 64076 records in RAM.
INFO 2026-06-08 08:31:37 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:15,665,853
INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 609404 as yet unmatched pairs. 61790 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:29,311,071
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 607110 as yet unmatched pairs. 59490 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:42,313,053
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 604843 as yet unmatched pairs. 57213 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:48,778,156
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 602546 as yet unmatched pairs. 54914 records in RAM.
INFO 2026-06-08 08:31:45 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 2s. Last read position: chr12:49,185,178
INFO 2026-06-08 08:31:45 MarkDuplicates Tracking 600636 as yet unmatched pairs. 53004 records in RAM.
INFO 2026-06-08 08:31:47 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr12:51,238,903
INFO 2026-06-08 08:31:47 MarkDuplicates Tracking 598046 as yet unmatched pairs. 50413 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr12:53,039,302
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 595769 as yet unmatched pairs. 48135 records in RAM.
INFO 2026-06-08 08:31:51 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr12:53,458,146
INFO 2026-06-08 08:31:51 MarkDuplicates Tracking 592928 as yet unmatched pairs. 45292 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr12:54,374,120
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 590388 as yet unmatched pairs. 42752 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:56,159,673
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 588721 as yet unmatched pairs. 41084 records in RAM.
INFO 2026-06-08 08:31:56 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:56,672,799
INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 586151 as yet unmatched pairs. 38512 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr12:57,106,763
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 583829 as yet unmatched pairs. 36188 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:57,199,876
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 580954 as yet unmatched pairs. 33308 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr12:57,719,035
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 578455 as yet unmatched pairs. 30808 records in RAM.
INFO 2026-06-08 08:32:02 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr12:67,658,633
INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 575927 as yet unmatched pairs. 28275 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr12:75,480,903
INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 573844 as yet unmatched pairs. 26190 records in RAM.
INFO 2026-06-08 08:32:06 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr12:91,108,877
INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 572919 as yet unmatched pairs. 25256 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr12:96,002,972
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 570055 as yet unmatched pairs. 22390 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 2s. Last read position: chr12:104,031,117
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 566863 as yet unmatched pairs. 19193 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr12:109,469,554
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 564487 as yet unmatched pairs. 16809 records in RAM.
INFO 2026-06-08 08:32:14 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr12:112,176,613
INFO 2026-06-08 08:32:14 MarkDuplicates Tracking 561931 as yet unmatched pairs. 14251 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr12:116,008,660
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 559484 as yet unmatched pairs. 11804 records in RAM.
INFO 2026-06-08 08:32:17 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr12:120,534,739
INFO 2026-06-08 08:32:17 MarkDuplicates Tracking 557042 as yet unmatched pairs. 9352 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr12:122,860,400
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 554242 as yet unmatched pairs. 6546 records in RAM.
INFO 2026-06-08 08:32:20 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr12:124,362,208
INFO 2026-06-08 08:32:20 MarkDuplicates Tracking 551767 as yet unmatched pairs. 4062 records in RAM.
INFO 2026-06-08 08:32:22 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr12:132,525,801
INFO 2026-06-08 08:32:22 MarkDuplicates Tracking 549072 as yet unmatched pairs. 1365 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr13:23,331,182
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 546589 as yet unmatched pairs. 23783 records in RAM.
INFO 2026-06-08 08:32:25 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr13:32,535,870
INFO 2026-06-08 08:32:25 MarkDuplicates Tracking 544515 as yet unmatched pairs. 21699 records in RAM.
INFO 2026-06-08 08:32:27 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr13:41,458,403
INFO 2026-06-08 08:32:27 MarkDuplicates Tracking 542652 as yet unmatched pairs. 19830 records in RAM.
INFO 2026-06-08 08:32:29 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr13:47,948,947
INFO 2026-06-08 08:32:29 MarkDuplicates Tracking 539533 as yet unmatched pairs. 16708 records in RAM.
INFO 2026-06-08 08:32:31 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 2s. Last read position: chr13:75,341,576
INFO 2026-06-08 08:32:31 MarkDuplicates Tracking 537304 as yet unmatched pairs. 14473 records in RAM.
INFO 2026-06-08 08:32:33 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr13:79,322,362
INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 534895 as yet unmatched pairs. 12063 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr13:99,015,484
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 532548 as yet unmatched pairs. 9710 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr13:109,784,655
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 529940 as yet unmatched pairs. 7093 records in RAM.
INFO 2026-06-08 08:32:38 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr13:110,489,463
INFO 2026-06-08 08:32:38 MarkDuplicates Tracking 527925 as yet unmatched pairs. 5069 records in RAM.
INFO 2026-06-08 08:32:40 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr13:113,218,941
INFO 2026-06-08 08:32:40 MarkDuplicates Tracking 524550 as yet unmatched pairs. 1685 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr14:20,801,707
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 524260 as yet unmatched pairs. 50968 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr14:22,830,057
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 519507 as yet unmatched pairs. 46213 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr14:24,160,380
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 516889 as yet unmatched pairs. 43586 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr14:32,091,782
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 514457 as yet unmatched pairs. 41149 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr14:37,592,169
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 511621 as yet unmatched pairs. 38307 records in RAM.
INFO 2026-06-08 08:32:50 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr14:50,771,371
INFO 2026-06-08 08:32:50 MarkDuplicates Tracking 509659 as yet unmatched pairs. 36322 records in RAM.
INFO 2026-06-08 08:32:52 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr14:60,144,908
INFO 2026-06-08 08:32:52 MarkDuplicates Tracking 507277 as yet unmatched pairs. 33930 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr14:67,279,164
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 504880 as yet unmatched pairs. 31530 records in RAM.
INFO 2026-06-08 08:32:55 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr14:71,103,491
INFO 2026-06-08 08:32:55 MarkDuplicates Tracking 502424 as yet unmatched pairs. 29073 records in RAM.
INFO 2026-06-08 08:32:57 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr14:74,486,399
INFO 2026-06-08 08:32:57 MarkDuplicates Tracking 500500 as yet unmatched pairs. 27146 records in RAM.
INFO 2026-06-08 08:32:59 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr14:74,552,892
INFO 2026-06-08 08:32:59 MarkDuplicates Tracking 497916 as yet unmatched pairs. 24559 records in RAM.
INFO 2026-06-08 08:33:01 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr14:75,280,558
INFO 2026-06-08 08:33:01 MarkDuplicates Tracking 496028 as yet unmatched pairs. 22670 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr14:89,162,532
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 492176 as yet unmatched pairs. 18810 records in RAM.
INFO 2026-06-08 08:33:04 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr14:93,242,681
INFO 2026-06-08 08:33:04 MarkDuplicates Tracking 489618 as yet unmatched pairs. 16251 records in RAM.
INFO 2026-06-08 08:33:06 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr14:96,345,308
INFO 2026-06-08 08:33:06 MarkDuplicates Tracking 487279 as yet unmatched pairs. 13912 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr14:102,044,402
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 485042 as yet unmatched pairs. 11658 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr14:103,742,709
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 482054 as yet unmatched pairs. 8668 records in RAM.
INFO 2026-06-08 08:33:11 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,126
INFO 2026-06-08 08:33:11 MarkDuplicates Tracking 480132 as yet unmatched pairs. 6745 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,012
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 478215 as yet unmatched pairs. 4824 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,364
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 477452 as yet unmatched pairs. 4060 records in RAM.
INFO 2026-06-08 08:33:16 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 2s. Last read position: chr15:22,678,230
INFO 2026-06-08 08:33:16 MarkDuplicates Tracking 473191 as yet unmatched pairs. 50763 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr15:29,761,221
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 471150 as yet unmatched pairs. 48719 records in RAM.
INFO 2026-06-08 08:33:20 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr15:38,498,657
INFO 2026-06-08 08:33:20 MarkDuplicates Tracking 468993 as yet unmatched pairs. 46558 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr15:40,844,986
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 466614 as yet unmatched pairs. 44179 records in RAM.
INFO 2026-06-08 08:33:23 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr15:42,310,805
INFO 2026-06-08 08:33:23 MarkDuplicates Tracking 464140 as yet unmatched pairs. 41705 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr15:43,768,552
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 462291 as yet unmatched pairs. 39855 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr15:45,135,133
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 459725 as yet unmatched pairs. 37287 records in RAM.
INFO 2026-06-08 08:33:28 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr15:48,992,312
INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 457260 as yet unmatched pairs. 34821 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr15:52,397,368
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 454614 as yet unmatched pairs. 32165 records in RAM.
INFO 2026-06-08 08:33:31 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr15:58,610,431
INFO 2026-06-08 08:33:31 MarkDuplicates Tracking 452300 as yet unmatched pairs. 29847 records in RAM.
INFO 2026-06-08 08:33:33 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr15:63,061,777
INFO 2026-06-08 08:33:33 MarkDuplicates Tracking 450293 as yet unmatched pairs. 27837 records in RAM.
INFO 2026-06-08 08:33:35 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr15:65,093,138
INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 447520 as yet unmatched pairs. 25063 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 2s. Last read position: chr15:69,384,823
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 445024 as yet unmatched pairs. 22565 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr15:73,176,400
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 442515 as yet unmatched pairs. 20054 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr15:74,902,698
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 440175 as yet unmatched pairs. 17712 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr15:77,056,158
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 437890 as yet unmatched pairs. 15424 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr15:78,931,459
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 437811 as yet unmatched pairs. 15343 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr15:82,538,898
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 433157 as yet unmatched pairs. 10687 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr15:85,578,988
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 432327 as yet unmatched pairs. 9857 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr15:85,730,593
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 429512 as yet unmatched pairs. 7041 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr15:90,443,339
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 426403 as yet unmatched pairs. 3928 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr15:96,332,030
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 423897 as yet unmatched pairs. 1422 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr16:510,681
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 421415 as yet unmatched pairs. 72681 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:1,241,472
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 419258 as yet unmatched pairs. 70523 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr16:1,964,533
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 415976 as yet unmatched pairs. 67236 records in RAM.
INFO 2026-06-08 08:34:00 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 2s. Last read position: chr16:2,281,092
INFO 2026-06-08 08:34:00 MarkDuplicates Tracking 413734 as yet unmatched pairs. 64994 records in RAM.
INFO 2026-06-08 08:34:02 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 2s. Last read position: chr16:2,761,651
INFO 2026-06-08 08:34:02 MarkDuplicates Tracking 411323 as yet unmatched pairs. 62576 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:2,770,376
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 409289 as yet unmatched pairs. 60537 records in RAM.
INFO 2026-06-08 08:34:05 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr16:3,850,663
INFO 2026-06-08 08:34:05 MarkDuplicates Tracking 406140 as yet unmatched pairs. 57386 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:5,056,108
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 403584 as yet unmatched pairs. 54827 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:11,850,356
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 400889 as yet unmatched pairs. 52126 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:14,918,763
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 399007 as yet unmatched pairs. 50244 records in RAM.
INFO 2026-06-08 08:34:11 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:15,704,111
INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 397564 as yet unmatched pairs. 48793 records in RAM.
INFO 2026-06-08 08:34:13 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr16:16,317,505
INFO 2026-06-08 08:34:13 MarkDuplicates Tracking 395576 as yet unmatched pairs. 46801 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr16:18,348,594
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 394970 as yet unmatched pairs. 46192 records in RAM.
INFO 2026-06-08 08:34:16 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr16:18,852,395
INFO 2026-06-08 08:34:16 MarkDuplicates Tracking 393552 as yet unmatched pairs. 44774 records in RAM.
INFO 2026-06-08 08:34:18 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr16:21,458,001
INFO 2026-06-08 08:34:18 MarkDuplicates Tracking 392164 as yet unmatched pairs. 43384 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr16:22,513,771
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 390954 as yet unmatched pairs. 42174 records in RAM.
INFO 2026-06-08 08:34:21 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:25,239,854
INFO 2026-06-08 08:34:21 MarkDuplicates Tracking 389369 as yet unmatched pairs. 40587 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr16:28,727,110
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 387381 as yet unmatched pairs. 38598 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr16:29,483,851
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 386458 as yet unmatched pairs. 37674 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr16:29,985,741
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 383618 as yet unmatched pairs. 34830 records in RAM.
INFO 2026-06-08 08:34:28 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr16:30,397,456
INFO 2026-06-08 08:34:28 MarkDuplicates Tracking 381749 as yet unmatched pairs. 32960 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr16:30,965,104
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 379136 as yet unmatched pairs. 30345 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr16:31,474,357
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 376540 as yet unmatched pairs. 27745 records in RAM.
INFO 2026-06-08 08:34:33 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr16:53,157,208
INFO 2026-06-08 08:34:33 MarkDuplicates Tracking 374430 as yet unmatched pairs. 25629 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr16:56,500,785
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 371784 as yet unmatched pairs. 22982 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr16:57,766,944
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 369046 as yet unmatched pairs. 20242 records in RAM.
INFO 2026-06-08 08:34:38 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr16:67,029,463
INFO 2026-06-08 08:34:38 MarkDuplicates Tracking 366438 as yet unmatched pairs. 17633 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr16:67,946,185
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 363549 as yet unmatched pairs. 14739 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr16:69,718,176
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 361231 as yet unmatched pairs. 12419 records in RAM.
INFO 2026-06-08 08:34:43 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr16:71,789,442
INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 358831 as yet unmatched pairs. 10017 records in RAM.
INFO 2026-06-08 08:34:45 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr16:75,568,060
INFO 2026-06-08 08:34:45 MarkDuplicates Tracking 357317 as yet unmatched pairs. 8503 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 2s. Last read position: chr16:85,661,016
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 353831 as yet unmatched pairs. 5006 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 2s. Last read position: chr16:89,196,106
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 351894 as yet unmatched pairs. 3061 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 2s. Last read position: chr17:1,031,525
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 348221 as yet unmatched pairs. 97207 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr17:1,677,563
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 345899 as yet unmatched pairs. 94883 records in RAM.
INFO 2026-06-08 08:35:51 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 57s. Last read position: chr17:4,050,910
INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 342907 as yet unmatched pairs. 91891 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 70s. Last read position: chr17:5,004,925
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 341081 as yet unmatched pairs. 90063 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,611
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 338421 as yet unmatched pairs. 87402 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:7,564,706
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 335283 as yet unmatched pairs. 84261 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:7,949,117
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 332862 as yet unmatched pairs. 81839 records in RAM.
INFO 2026-06-08 08:37:08 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:8,232,040
INFO 2026-06-08 08:37:08 MarkDuplicates Tracking 330416 as yet unmatched pairs. 79389 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 2s. Last read position: chr17:15,259,119
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 330333 as yet unmatched pairs. 79303 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:17,495,452
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 325704 as yet unmatched pairs. 74674 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr17:19,385,200
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 323526 as yet unmatched pairs. 72492 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:28,635,505
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 320679 as yet unmatched pairs. 69642 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:30,184,767
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 318122 as yet unmatched pairs. 67083 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:34,983,026
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 315669 as yet unmatched pairs. 64625 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr17:36,575,157
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 313373 as yet unmatched pairs. 62329 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,167
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 314554 as yet unmatched pairs. 63509 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 2s. Last read position: chr17:39,712,188
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 309161 as yet unmatched pairs. 58115 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:40,453,121
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 306031 as yet unmatched pairs. 54984 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr17:42,333,916
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 303663 as yet unmatched pairs. 52615 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 2s. Last read position: chr17:43,021,964
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 300936 as yet unmatched pairs. 49885 records in RAM.
INFO 2026-06-08 08:37:32 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr17:44,851,774
INFO 2026-06-08 08:37:32 MarkDuplicates Tracking 298296 as yet unmatched pairs. 47238 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr17:46,549,027
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 296588 as yet unmatched pairs. 45526 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:48,910,847
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 294168 as yet unmatched pairs. 43106 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,927
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 293313 as yet unmatched pairs. 42251 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,010
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 292681 as yet unmatched pairs. 41619 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,252
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 286993 as yet unmatched pairs. 35930 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr17:51,161,186
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 283639 as yet unmatched pairs. 32572 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr17:59,648,384
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 281936 as yet unmatched pairs. 30863 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr17:61,408,443
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 278744 as yet unmatched pairs. 27671 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr17:63,818,062
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 276294 as yet unmatched pairs. 25221 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr17:64,895,953
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 273810 as yet unmatched pairs. 22732 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:68,524,047
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 274478 as yet unmatched pairs. 23393 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr17:74,768,836
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 269237 as yet unmatched pairs. 18148 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 2s. Last read position: chr17:75,778,588
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 267163 as yet unmatched pairs. 16072 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 2s. Last read position: chr17:77,190,879
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 264775 as yet unmatched pairs. 13683 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 2s. Last read position: chr17:78,973,033
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 262015 as yet unmatched pairs. 10920 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr17:81,053,676
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 258705 as yet unmatched pairs. 7607 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr17:81,847,028
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 256138 as yet unmatched pairs. 5039 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr17:82,091,256
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 253214 as yet unmatched pairs. 2115 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr18:3,253,330
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 251301 as yet unmatched pairs. 14501 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr18:12,030,342
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 247904 as yet unmatched pairs. 11094 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr18:26,018,314
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 245706 as yet unmatched pairs. 8895 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr18:45,934,809
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 243373 as yet unmatched pairs. 6561 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr18:57,613,601
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 241135 as yet unmatched pairs. 4319 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr18:74,263,351
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 239720 as yet unmatched pairs. 2903 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 2s. Last read position: chr19:804,153
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 235828 as yet unmatched pairs. 98514 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:1,254,388
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 232783 as yet unmatched pairs. 95466 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:2,042,745
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 230367 as yet unmatched pairs. 93048 records in RAM.
INFO 2026-06-08 08:38:19 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 2s. Last read position: chr19:3,449,011
INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 227004 as yet unmatched pairs. 89685 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 2s. Last read position: chr19:4,817,029
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 223857 as yet unmatched pairs. 86534 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:6,415,412
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 221042 as yet unmatched pairs. 83715 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:6,718,355
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 218704 as yet unmatched pairs. 81375 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:7,963,596
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 215871 as yet unmatched pairs. 78542 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:10,284,436
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 213234 as yet unmatched pairs. 75904 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:10,987,758
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 210564 as yet unmatched pairs. 73234 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:11,666,804
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 207986 as yet unmatched pairs. 70655 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:13,025,158
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 206375 as yet unmatched pairs. 69044 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr19:14,450,903
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 202864 as yet unmatched pairs. 65533 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:15,244,291
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 200383 as yet unmatched pairs. 63052 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:16,523,094
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 197465 as yet unmatched pairs. 60130 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:17,862,940
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 196282 as yet unmatched pairs. 58942 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:18,749,794
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 191801 as yet unmatched pairs. 54461 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 2s. Last read position: chr19:23,827,154
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 189254 as yet unmatched pairs. 51913 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 2s. Last read position: chr19:35,141,159
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 186583 as yet unmatched pairs. 49239 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:36,149,675
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 183689 as yet unmatched pairs. 46344 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:38,729,361
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 180817 as yet unmatched pairs. 43472 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,471
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 178631 as yet unmatched pairs. 41283 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:40,367,808
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 175743 as yet unmatched pairs. 38395 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr19:40,786,867
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 172910 as yet unmatched pairs. 35561 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:41,506,187
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 170368 as yet unmatched pairs. 33018 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr19:42,272,037
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 167800 as yet unmatched pairs. 30450 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:43,774,293
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 165001 as yet unmatched pairs. 27648 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:45,472,833
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 163085 as yet unmatched pairs. 25726 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr19:46,921,012
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 159614 as yet unmatched pairs. 22255 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:48,485,767
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 156773 as yet unmatched pairs. 19414 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:49,336,988
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 154462 as yet unmatched pairs. 17102 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr19:49,670,409
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 151571 as yet unmatched pairs. 14211 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:50,359,857
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 151923 as yet unmatched pairs. 14563 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:52,907,856
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 146261 as yet unmatched pairs. 8901 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:54,458,637
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 144400 as yet unmatched pairs. 7039 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:55,613,840
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 141104 as yet unmatched pairs. 3741 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:58,090,163
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 139236 as yet unmatched pairs. 1872 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr20:2,660,913
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 136167 as yet unmatched pairs. 30775 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr20:8,757,047
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 133395 as yet unmatched pairs. 28002 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr20:18,315,292
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 131200 as yet unmatched pairs. 25806 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr20:25,458,442
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 128505 as yet unmatched pairs. 23110 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr20:34,709,237
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 125910 as yet unmatched pairs. 20513 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr20:36,500,420
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 123484 as yet unmatched pairs. 18086 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr20:41,084,549
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 121220 as yet unmatched pairs. 15821 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr20:45,327,316
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 123105 as yet unmatched pairs. 17706 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 2s. Last read position: chr20:47,236,440
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 116197 as yet unmatched pairs. 10796 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr20:50,894,358
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 113917 as yet unmatched pairs. 8515 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr20:58,910,682
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 112533 as yet unmatched pairs. 7130 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr20:62,879,364
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 108166 as yet unmatched pairs. 2761 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr21:5,037,039
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 105289 as yet unmatched pairs. 16938 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,961
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 103984 as yet unmatched pairs. 15630 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,409
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 103145 as yet unmatched pairs. 14789 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr21:15,877,984
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 102091 as yet unmatched pairs. 13734 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr21:32,745,618
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 99554 as yet unmatched pairs. 11197 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr21:37,156,805
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 97447 as yet unmatched pairs. 9088 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr21:41,508,104
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 94659 as yet unmatched pairs. 6298 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr21:44,890,183
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 92547 as yet unmatched pairs. 4186 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 2s. Last read position: chr21:46,126,056
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 90035 as yet unmatched pairs. 1671 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr22:18,922,368
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 87613 as yet unmatched pairs. 41838 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr22:20,742,737
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 84232 as yet unmatched pairs. 38457 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr22:23,290,362
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 82079 as yet unmatched pairs. 36304 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr22:24,187,676
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 79260 as yet unmatched pairs. 33485 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 2s. Last read position: chr22:28,795,715
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 77851 as yet unmatched pairs. 32076 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr22:29,549,054
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 74256 as yet unmatched pairs. 28481 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr22:31,685,548
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 71691 as yet unmatched pairs. 25916 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,284
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 69228 as yet unmatched pairs. 23453 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr22:37,024,700
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 66579 as yet unmatched pairs. 20803 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr22:38,303,270
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 63873 as yet unmatched pairs. 18097 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr22:39,522,118
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 61837 as yet unmatched pairs. 16061 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr22:41,339,815
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 58993 as yet unmatched pairs. 13217 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr22:42,215,181
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 56243 as yet unmatched pairs. 10467 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr22:45,702,730
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 53645 as yet unmatched pairs. 7869 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr22:50,220,635
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 50968 as yet unmatched pairs. 5192 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chr22:50,526,453
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 47363 as yet unmatched pairs. 1587 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chrX:3,311,535
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 44398 as yet unmatched pairs. 39430 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chrX:16,849,258
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 42164 as yet unmatched pairs. 37196 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chrX:31,121,807
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 39781 as yet unmatched pairs. 34796 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chrX:41,578,431
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 37423 as yet unmatched pairs. 32438 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chrX:47,583,441
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 35349 as yet unmatched pairs. 30364 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chrX:49,174,674
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 32471 as yet unmatched pairs. 27486 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chrX:53,554,890
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 30267 as yet unmatched pairs. 25282 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chrX:65,739,024
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 28067 as yet unmatched pairs. 23082 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chrX:71,556,951
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 25722 as yet unmatched pairs. 20737 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chrX:77,696,688
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 23623 as yet unmatched pairs. 18638 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chrX:103,587,021
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 21319 as yet unmatched pairs. 16334 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chrX:118,573,871
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 18827 as yet unmatched pairs. 13842 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chrX:130,014,030
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 16476 as yet unmatched pairs. 11491 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chrX:150,470,335
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 14102 as yet unmatched pairs. 9116 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chrX:154,019,430
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 11825 as yet unmatched pairs. 6839 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 1s. Last read position: chrX:154,360,520
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 10384 as yet unmatched pairs. 5398 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chrX:154,441,172
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 6526 as yet unmatched pairs. 1540 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,199
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 4609 as yet unmatched pairs. 1818 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,528
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 2795 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,598
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 741 as yet unmatched pairs. 511 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 631997652 records. 0 pairs never matched.
INFO 2026-06-08 08:41:36 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141112; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:41:36 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:41:40 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:41:40 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder Large duplicate set. size = 1482
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,419
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder Large duplicate set. size = 1708
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,649
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,799
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,352
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder Large duplicate set. size = 1159
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,125
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,414
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,379
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder Large duplicate set. size = 1275
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,962
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder Large duplicate set. size = 1737
INFO 2026-06-08 08:41:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,122
INFO 2026-06-08 08:41:55 OpticalDuplicateFinder Large duplicate set. size = 1871
INFO 2026-06-08 08:41:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,875
INFO 2026-06-08 08:41:55 OpticalDuplicateFinder Large duplicate set. size = 1031
INFO 2026-06-08 08:41:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,465
INFO 2026-06-08 08:41:55 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 08:41:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,264
INFO 2026-06-08 08:41:56 OpticalDuplicateFinder Large duplicate set. size = 1146
INFO 2026-06-08 08:41:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,290
INFO 2026-06-08 08:41:56 OpticalDuplicateFinder Large duplicate set. size = 1080
INFO 2026-06-08 08:41:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,297
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder Large duplicate set. size = 1435
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,028
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder Large duplicate set. size = 1277
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,233
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder Large duplicate set. size = 1125
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,898
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder Large duplicate set. size = 1259
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,872
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder Large duplicate set. size = 2132
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,898
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,632
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder Large duplicate set. size = 1278
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,833
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder Large duplicate set. size = 1632
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,414
INFO 2026-06-08 08:42:02 OpticalDuplicateFinder Large duplicate set. size = 2157
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,562
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,051
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,884
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder Large duplicate set. size = 1470
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,590
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder Large duplicate set. size = 1257
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,490
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,406
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder Large duplicate set. size = 1184
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,005
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder Large duplicate set. size = 1539
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,589
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder Large duplicate set. size = 1080
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,562
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,155
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder Large duplicate set. size = 1210
INFO 2026-06-08 08:42:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,638
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1503
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,179
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,579
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1158
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,859
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1907
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,528
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1555
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,173
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1729
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,850
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1292
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,035
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1310
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,571
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1306
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,356
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 2049
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,087
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,590
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,700
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1172
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,375
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,957
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 08:42:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,105
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1424
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,396
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1549
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,346
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1521
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,058
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1299
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,186
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,703
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,448
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 3203
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,147
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,385
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,644
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1938
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,858
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 3420
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,606
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,702
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,352
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1396
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,803
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1631
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,017
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1276
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,093
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1390
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,903
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1505
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,407
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1602
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,584
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1814
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,539
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,688
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,305
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1556
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,489
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,507
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,960
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1567
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,986
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 2481
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,849
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,845
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1251
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,713
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,741
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1217
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,859
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1473
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,258
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,396
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1372
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,043
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1310
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,786
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1301
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,137
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,770
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder Large duplicate set. size = 1163
INFO 2026-06-08 08:42:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,874
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1266
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,226
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1170
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,408
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,832
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1083
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,467
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1128
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,900
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,055
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,079
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1302
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,094
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1261
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,772
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,906
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,454
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,111
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 2451
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,727
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,218
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 2725
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,483
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,300
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1476
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,149
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 2904
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,792
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,631
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,229
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,413
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1137
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,868
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1239
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,658
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1520
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,356
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,428
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1352
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,878
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 2251
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,693
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,644
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 2613
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,608
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,762
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1755
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,074
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,302
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 3464
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,481
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,260
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,273
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,203
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,390
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1477
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,722
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,099
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1940
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,400
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 3145
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,679
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,741
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,718
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 3393
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,149
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,446
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,204
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 2464
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,922
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,378
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1331
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,314
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1489
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,287
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 5031
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,831
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,477
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,363
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,473
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,706
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1172
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,048
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1214
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,853
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1616
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,464
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 3920
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,780
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,550
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,566
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1451
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,455
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1720
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,344
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 2057
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,354
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,031
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1436
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,232
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1256
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,443
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1074
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,181
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1296
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,202
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,050
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,645
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1761
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,471
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1414
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,059
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1410
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,970
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1409
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,785
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1196
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,352
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,611
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,223
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1361
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,247
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1240
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,405
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,560
INFO 2026-06-08 08:42:10 OpticalDuplicateFinder Large duplicate set. size = 1963
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,486
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder Large duplicate set. size = 1378
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,059
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder Large duplicate set. size = 1813
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,649
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder Large duplicate set. size = 1391
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,315
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,362
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder Large duplicate set. size = 1272
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,547
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder Large duplicate set. size = 1304
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,950
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder Large duplicate set. size = 1196
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,874
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder Large duplicate set. size = 1582
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,426
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder Large duplicate set. size = 1341
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,912
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,175
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder Large duplicate set. size = 1349
INFO 2026-06-08 08:42:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,574
INFO 2026-06-08 08:42:12 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-08 08:42:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,173
INFO 2026-06-08 08:42:16 OpticalDuplicateFinder Large duplicate set. size = 1200
INFO 2026-06-08 08:42:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,581
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,815
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1241
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,353
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1519
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,406
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1644
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,918
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1648
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,115
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1469
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,484
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1401
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,969
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,591
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 3178
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,803
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,509
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,510
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1686
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,665
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,093
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1501
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,813
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1704
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,241
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,858
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1272
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,340
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1678
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,830
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1203
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,056
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1138
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,890
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1693
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,909
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,460
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 3524
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,238
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,834
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,307
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 2214
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,489
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,878
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,916
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1797
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,526
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1501
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,629
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,851
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 2816
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,988
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,089
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1724
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,731
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,209
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1439
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,606
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,518
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1606
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,111
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1257
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,299
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,334
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1371
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,914
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1379
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,977
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 1261
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,193
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder Large duplicate set. size = 2098
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,134
INFO 2026-06-08 08:42:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,706
INFO 2026-06-08 08:43:20 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:43:21 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:44:34 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:44:38 MarkDuplicates After generateDuplicateIndexes freeMemory: 203880816; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:44:38 MarkDuplicates Marking 330696113 records as duplicates.
INFO 2026-06-08 08:44:38 MarkDuplicates Found 9148749 optical duplicate clusters.
INFO 2026-06-08 08:44:38 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:44:54 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:23,692,690
INFO 2026-06-08 08:45:10 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:45,660,291
INFO 2026-06-08 08:45:26 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:47s. Time for last 10,000,000: 15s. Last read position: chr1:116,404,459
INFO 2026-06-08 08:45:41 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:03s. Time for last 10,000,000: 15s. Last read position: chr1:154,237,056
INFO 2026-06-08 08:45:57 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:18s. Time for last 10,000,000: 15s. Last read position: chr1:171,584,424
INFO 2026-06-08 08:46:13 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:34s. Time for last 10,000,000: 15s. Last read position: chr1:212,791,948
INFO 2026-06-08 08:46:28 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:50s. Time for last 10,000,000: 15s. Last read position: chr2:30,234,404
INFO 2026-06-08 08:46:44 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:06s. Time for last 10,000,000: 15s. Last read position: chr2:59,188,199
INFO 2026-06-08 08:47:00 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:22s. Time for last 10,000,000: 15s. Last read position: chr2:108,487,720
INFO 2026-06-08 08:47:16 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:38s. Time for last 10,000,000: 15s. Last read position: chr2:189,057,388
INFO 2026-06-08 08:47:31 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:53s. Time for last 10,000,000: 15s. Last read position: chr2:215,410,000
INFO 2026-06-08 08:47:47 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:09s. Time for last 10,000,000: 15s. Last read position: chr3:9,930,450
INFO 2026-06-08 08:48:03 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:24s. Time for last 10,000,000: 15s. Last read position: chr3:51,994,913
INFO 2026-06-08 08:48:18 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:40s. Time for last 10,000,000: 15s. Last read position: chr3:132,675,361
INFO 2026-06-08 08:48:34 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 15s. Last read position: chr4:2,932,747
INFO 2026-06-08 08:48:49 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:11s. Time for last 10,000,000: 15s. Last read position: chr4:76,739,267
INFO 2026-06-08 08:49:05 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:27s. Time for last 10,000,000: 15s. Last read position: chr4:183,261,088
INFO 2026-06-08 08:49:22 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:43s. Time for last 10,000,000: 16s. Last read position: chr5:73,503,107
INFO 2026-06-08 08:49:37 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:59s. Time for last 10,000,000: 15s. Last read position: chr5:142,314,674
INFO 2026-06-08 08:49:52 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:14s. Time for last 10,000,000: 15s. Last read position: chr5:150,650,060
INFO 2026-06-08 08:50:08 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:30s. Time for last 10,000,000: 15s. Last read position: chr6:3,850,179
INFO 2026-06-08 08:50:23 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:45s. Time for last 10,000,000: 15s. Last read position: chr6:32,073,914
INFO 2026-06-08 08:50:39 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:00s. Time for last 10,000,000: 15s. Last read position: chr6:51,748,342
INFO 2026-06-08 08:50:55 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:17s. Time for last 10,000,000: 16s. Last read position: chr6:149,793,556
INFO 2026-06-08 08:51:11 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:32s. Time for last 10,000,000: 15s. Last read position: chr7:32,988,562
INFO 2026-06-08 08:51:26 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:48s. Time for last 10,000,000: 15s. Last read position: chr7:95,111,300
INFO 2026-06-08 08:51:42 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:03s. Time for last 10,000,000: 15s. Last read position: chr7:142,772,157
INFO 2026-06-08 08:51:57 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:19s. Time for last 10,000,000: 15s. Last read position: chr8:27,921,609
INFO 2026-06-08 08:52:12 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:34s. Time for last 10,000,000: 15s. Last read position: chr8:119,583,784
INFO 2026-06-08 08:52:28 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:50s. Time for last 10,000,000: 15s. Last read position: chr9:35,397,209
INFO 2026-06-08 08:52:44 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:05s. Time for last 10,000,000: 15s. Last read position: chr9:125,239,288
INFO 2026-06-08 08:52:59 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:21s. Time for last 10,000,000: 15s. Last read position: chr10:17,236,302
INFO 2026-06-08 08:53:15 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:37s. Time for last 10,000,000: 15s. Last read position: chr10:79,612,337
INFO 2026-06-08 08:53:31 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:52s. Time for last 10,000,000: 15s. Last read position: chr11:397,137
INFO 2026-06-08 08:53:46 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:08s. Time for last 10,000,000: 15s. Last read position: chr11:57,600,206
INFO 2026-06-08 08:54:02 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 15s. Last read position: chr11:67,421,067
INFO 2026-06-08 08:54:17 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 15s. Last read position: chr11:118,628,065
INFO 2026-06-08 08:54:33 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:55s. Time for last 10,000,000: 15s. Last read position: chr12:9,109,373
INFO 2026-06-08 08:54:49 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:10s. Time for last 10,000,000: 15s. Last read position: chr12:54,374,120
INFO 2026-06-08 08:55:04 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:26s. Time for last 10,000,000: 15s. Last read position: chr12:104,031,117
INFO 2026-06-08 08:55:20 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:42s. Time for last 10,000,000: 16s. Last read position: chr13:41,458,403
INFO 2026-06-08 08:55:37 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:59s. Time for last 10,000,000: 16s. Last read position: chr14:24,160,380
INFO 2026-06-08 08:55:53 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:15s. Time for last 10,000,000: 16s. Last read position: chr14:89,162,532
INFO 2026-06-08 08:56:09 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:30s. Time for last 10,000,000: 15s. Last read position: chr15:38,498,657
INFO 2026-06-08 08:56:25 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:46s. Time for last 10,000,000: 16s. Last read position: chr15:69,384,823
INFO 2026-06-08 08:56:40 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:02s. Time for last 10,000,000: 15s. Last read position: chr16:510,681
INFO 2026-06-08 08:56:56 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:17s. Time for last 10,000,000: 15s. Last read position: chr16:15,704,111
INFO 2026-06-08 08:57:12 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:34s. Time for last 10,000,000: 16s. Last read position: chr16:30,397,456
INFO 2026-06-08 08:57:28 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:49s. Time for last 10,000,000: 15s. Last read position: chr16:75,568,060
INFO 2026-06-08 08:57:43 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:05s. Time for last 10,000,000: 15s. Last read position: chr17:8,232,040
INFO 2026-06-08 08:57:59 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:21s. Time for last 10,000,000: 15s. Last read position: chr17:40,453,121
INFO 2026-06-08 08:58:15 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:36s. Time for last 10,000,000: 15s. Last read position: chr17:59,648,384
INFO 2026-06-08 08:58:30 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:52s. Time for last 10,000,000: 15s. Last read position: chr17:81,847,028
INFO 2026-06-08 08:58:46 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:08s. Time for last 10,000,000: 15s. Last read position: chr19:2,042,745
INFO 2026-06-08 08:59:01 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:23s. Time for last 10,000,000: 15s. Last read position: chr19:14,450,903
INFO 2026-06-08 08:59:16 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:38s. Time for last 10,000,000: 15s. Last read position: chr19:40,367,808
INFO 2026-06-08 08:59:32 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 15s. Last read position: chr19:50,359,857
INFO 2026-06-08 08:59:47 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:08s. Time for last 10,000,000: 14s. Last read position: chr20:36,500,420
INFO 2026-06-08 09:00:01 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:23s. Time for last 10,000,000: 14s. Last read position: chr21:15,877,984
INFO 2026-06-08 09:00:17 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:38s. Time for last 10,000,000: 15s. Last read position: chr22:28,795,715
INFO 2026-06-08 09:00:32 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:54s. Time for last 10,000,000: 15s. Last read position: chr22:50,220,635
INFO 2026-06-08 09:00:47 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:09s. Time for last 10,000,000: 15s. Last read position: chrX:71,556,951
INFO 2026-06-08 09:01:02 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:24s. Time for last 10,000,000: 15s. Last read position: GL000220.1:159,528
INFO 2026-06-08 09:01:13 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:01:13 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:01:13 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:01:13 MarkDuplicates Before output close freeMemory: 203850568; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:01:13 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:01:13 MarkDuplicates After output close freeMemory: 104086800; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:01:13 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.42 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory