Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/9742a23f2a3c7761b1ce7d9ad23ac5/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/ce342ec72a56a63b3c624087e67a95/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/ce342ec72a56a63b3c624087e67a95/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory