File Info

Filename
run_level_intermediate.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/1d69573a339d66f8a1ec9ec9edea90/run_level_intermediate.tsv
Size
4.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:RUN_LEVEL_INTERMEDIATE (run_level_qc)
Attempt

Content

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SAMPLE_ID SOURCE_QC ANALYTE PIPELINE_VERSION QC_METRIC VALUE METRIC_ORIGIN
RUN RNA rnafusion_3.0.2-gunknown CLUSTER_DENSITY 9457.29 bclconvert
RUN RNA rnafusion_3.0.2-gunknown READS_PASSING_FILTER_PERCENT 77.2361 bclconvert
RUN RNA rnafusion_3.0.2-gunknown Q30_RUN_WIDE_PERCENT 93.5075 bclconvert
RUN RNA rnafusion_3.0.2-gunknown OCCUPANCY_RATE 92.8981 bclconvert
RUN RNA rnafusion_3.0.2-gunknown YIELD_IN_GB 9515.224126414 bclconvert
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS 392753929 bclconvert
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS 763260456 bclconvert
NTC_0001_0001_B23MHV2LT4_1 NTC RNA rnafusion_3.0.2-gunknown READS 179938 bclconvert
NTC_0001_0001_B23MHV2LT4_2 NTC RNA rnafusion_3.0.2-gunknown READS 260893 bclconvert
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 590717084.0 seqtools
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.941342 seqtools
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.971239 seqtools
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.048665 seqtools
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.028761 seqtools
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 332327275.0 seqtools
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 168487428.0 seqtools
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 17180459.0 seqtools
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 4989373.0 seqtools
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 282580628.0 star
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.005972 star
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 143.0 kallisto
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.04 kallisto
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 5.018 kallisto
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 62.44 contamination
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 592056082.0 seqtools
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.941173 seqtools
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.973476 seqtools
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.04947 seqtools
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.026524 seqtools
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 337253616.0 seqtools
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 171734831.0 seqtools
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 17726676.0 seqtools
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 4679240.0 seqtools
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 284178144.0 star
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.005663 star
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 163.0 kallisto
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.021 kallisto
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 5.44 kallisto
FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 61.28 contamination
NTC_0001_0001_B23MHV2LT4_1 NTC RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 47120.0 seqtools
NTC_0001_0001_B23MHV2LT4_2 NTC RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 488868.0 seqtools
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_ALL_RNA_FUSIONS 81 fusion
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_TRUE_RNA_FUSIONS 0 fusion
FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_FALSE_RNA_FUSIONS 81 fusion
47 rows