Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/4b99f3206da2b9114edae0c515b79b/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/f2d2f40c441eb8edcd47d4be3419ca/fi_workdir/659_cYf-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/4b99f3206da2b9114edae0c515b79b/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 14514
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 14514
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:14514
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC007216.5--PDPR HAVANA gene 4110 29065 . + . FI_gene_label "PDPR^ENSG00000090857.14" ; ID "AC007216.5--PDPR^PDPR^ENSG00000090857.14" ; ccdsid "CCDS45520.1" ; exon_id "ENSE00003601614.1" ; exon_number 3 ; gene_id "AC007216.5--PDPR^PDPR^ENSG00000090857.14" ; gene_name PDPR ; gene_type protein_coding ; havana_gene "OTTHUMG00000176963.4" ; havana_transcript "OTTHUMT00000434502.2" ; hgnc_id "HGNC:30264" ; level 2 ; orig_coord_info "chr16,70120493,70120719,+" ; protein_id "ENSP00000288050.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC007216.5--PDPR^ENST00000288050.9" ; transcript_name "PDPR-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC007216.5--PDPR HAVANA mRNA 4110 29065 . + . FI_gene_label "PDPR^ENSG00000090857.14" ; ID "AC007216.5--PDPR^ENST00000288050.9" ; Parent "AC007216.5--PDPR^PDPR^ENSG00000090857.14" ; ccdsid "CCDS45520.1" ; exon_id "ENSE00003601614.1" ; exon_number 3 ; gene_id "AC007216.5--PDPR^PDPR^ENSG00000090857.14" ; gene_name PDPR ; gene_type protein_coding ; havana_gene "OTTHUMG00000176963.4" ; havana_transcript "OTTHUMT00000434502.2" ; hgnc_id "HGNC:30264" ; level 2 ; orig_coord_info "chr16,70120493,70120719,+" ; protein_id "ENSP00000288050.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC007216.5--PDPR^ENST00000288050.9" ; transcript_name "PDPR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC096555.1--PCSK2 HAVANA gene 9325 27728 . + . FI_gene_label "PCSK2^ENSG00000125851.10" ; ID "AC096555.1--PCSK2^PCSK2^ENSG00000125851.10" ; ccdsid "CCDS13125.1" ; exon_id "ENSE00001163726.3" ; exon_number 1 ; gene_id "AC096555.1--PCSK2^PCSK2^ENSG00000125851.10" ; gene_name PCSK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031941.6" ; havana_transcript "OTTHUMT00000078120.3" ; hgnc_id "HGNC:8744" ; level 2 ; orig_coord_info "chr20,17227306,17227482,+" ; protein_id "ENSP00000262545.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC096555.1--PCSK2^ENST00000262545.7" ; transcript_name "PCSK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC096555.1--PCSK2 HAVANA mRNA 9325 27728 . + . FI_gene_label "PCSK2^ENSG00000125851.10" ; ID "AC096555.1--PCSK2^ENST00000262545.7" ; Parent "AC096555.1--PCSK2^PCSK2^ENSG00000125851.10" ; ccdsid "CCDS13125.1" ; exon_id "ENSE00001163726.3" ; exon_number 1 ; gene_id "AC096555.1--PCSK2^PCSK2^ENSG00000125851.10" ; gene_name PCSK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031941.6" ; havana_transcript "OTTHUMT00000078120.3" ; hgnc_id "HGNC:8744" ; level 2 ; orig_coord_info "chr20,17227306,17227482,+" ; protein_id "ENSP00000262545.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC096555.1--PCSK2^ENST00000262545.7" ; transcript_name "PCSK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC138409.2--NAIP ENSEMBL gene 21878 43057 . + . FI_gene_label "NAIP^ENSG00000249437.8" ; ID "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; ccdsid "CCDS4009.1" ; exon_id "ENSE00002284906.1" ; exon_number 2 ; gene_id "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; gene_name NAIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163318.7" ; hgnc_id "HGNC:7634" ; level 3 ; orig_coord_info "chr5,71012348,71012915,-" ; protein_id "ENSP00000443944.1" ; tag basic appris_principal_2 CCDS ; transcript_id "AC138409.2--NAIP^ENST00000194097.8" ; transcript_name "NAIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC138409.2--NAIP ENSEMBL mRNA 21878 43057 . + . FI_gene_label "NAIP^ENSG00000249437.8" ; ID "AC138409.2--NAIP^ENST00000194097.8" ; Parent "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; ccdsid "CCDS4009.1" ; exon_id "ENSE00002284906.1" ; exon_number 2 ; gene_id "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; gene_name NAIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163318.7" ; hgnc_id "HGNC:7634" ; level 3 ; orig_coord_info "chr5,71012348,71012915,-" ; protein_id "ENSP00000443944.1" ; tag basic appris_principal_2 CCDS ; transcript_id "AC138409.2--NAIP^ENST00000194097.8" ; transcript_name "NAIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC139256.1--PDPR HAVANA gene 8859 33814 . + . FI_gene_label "PDPR^ENSG00000090857.14" ; ID "AC139256.1--PDPR^PDPR^ENSG00000090857.14" ; ccdsid "CCDS45520.1" ; exon_id "ENSE00003601614.1" ; exon_number 3 ; gene_id "AC139256.1--PDPR^PDPR^ENSG00000090857.14" ; gene_name PDPR ; gene_type protein_coding ; havana_gene "OTTHUMG00000176963.4" ; havana_transcript "OTTHUMT00000434502.2" ; hgnc_id "HGNC:30264" ; level 2 ; orig_coord_info "chr16,70120493,70120719,+" ; protein_id "ENSP00000288050.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC139256.1--PDPR^ENST00000288050.9" ; transcript_name "PDPR-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC139256.1--PDPR HAVANA mRNA 8859 33814 . + . FI_gene_label "PDPR^ENSG00000090857.14" ; ID "AC139256.1--PDPR^ENST00000288050.9" ; Parent "AC139256.1--PDPR^PDPR^ENSG00000090857.14" ; ccdsid "CCDS45520.1" ; exon_id "ENSE00003601614.1" ; exon_number 3 ; gene_id "AC139256.1--PDPR^PDPR^ENSG00000090857.14" ; gene_name PDPR ; gene_type protein_coding ; havana_gene "OTTHUMG00000176963.4" ; havana_transcript "OTTHUMT00000434502.2" ; hgnc_id "HGNC:30264" ; level 2 ; orig_coord_info "chr16,70120493,70120719,+" ; protein_id "ENSP00000288050.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC139256.1--PDPR^ENST00000288050.9" ; transcript_name "PDPR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC231759.2--XAGE2 HAVANA gene 10067 13956 . + . FI_gene_label "XAGE2^ENSG00000155622.7" ; ID "AC231759.2--XAGE2^XAGE2^ENSG00000155622.7" ; ccdsid "CCDS59525.1" ; exon_id "ENSE00001631419.1" ; exon_number 2 ; gene_id "AC231759.2--XAGE2^XAGE2^ENSG00000155622.7" ; gene_name XAGE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021549.3" ; havana_transcript "OTTHUMT00000056628.3" ; hgnc_id "HGNC:4112" ; level 2 ; orig_coord_info "chrX,52370015,52370095,+" ; protein_id "ENSP00000286049.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC231759.2--XAGE2^ENST00000286049.3" ; transcript_name "XAGE2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC231759.2--XAGE2 HAVANA mRNA 10067 13956 . + . FI_gene_label "XAGE2^ENSG00000155622.7" ; ID "AC231759.2--XAGE2^ENST00000286049.3" ; Parent "AC231759.2--XAGE2^XAGE2^ENSG00000155622.7" ; ccdsid "CCDS59525.1" ; exon_id "ENSE00001631419.1" ; exon_number 2 ; gene_id "AC231759.2--XAGE2^XAGE2^ENSG00000155622.7" ; gene_name XAGE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021549.3" ; havana_transcript "OTTHUMT00000056628.3" ; hgnc_id "HGNC:4112" ; level 2 ; orig_coord_info "chrX,52370015,52370095,+" ; protein_id "ENSP00000286049.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC231759.2--XAGE2^ENST00000286049.3" ; transcript_name "XAGE2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACKR2--PCSK2 HAVANA gene 21903 40306 . + . FI_gene_label "PCSK2^ENSG00000125851.10" ; ID "ACKR2--PCSK2^PCSK2^ENSG00000125851.10" ; ccdsid "CCDS13125.1" ; exon_id "ENSE00001163726.3" ; exon_number 1 ; gene_id "ACKR2--PCSK2^PCSK2^ENSG00000125851.10" ; gene_name PCSK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031941.6" ; havana_transcript "OTTHUMT00000078120.3" ; hgnc_id "HGNC:8744" ; level 2 ; orig_coord_info "chr20,17227306,17227482,+" ; protein_id "ENSP00000262545.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACKR2--PCSK2^ENST00000262545.7" ; transcript_name "PCSK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACKR2--PCSK2 HAVANA mRNA 21903 40306 . + . FI_gene_label "PCSK2^ENSG00000125851.10" ; ID "ACKR2--PCSK2^ENST00000262545.7" ; Parent "ACKR2--PCSK2^PCSK2^ENSG00000125851.10" ; ccdsid "CCDS13125.1" ; exon_id "ENSE00001163726.3" ; exon_number 1 ; gene_id "ACKR2--PCSK2^PCSK2^ENSG00000125851.10" ; gene_name PCSK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031941.6" ; havana_transcript "OTTHUMT00000078120.3" ; hgnc_id "HGNC:8744" ; level 2 ; orig_coord_info "chr20,17227306,17227482,+" ; protein_id "ENSP00000262545.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACKR2--PCSK2^ENST00000262545.7" ; transcript_name "PCSK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACKR2--PCSK2 HAVANA gene 3172 16532 . + . FI_gene_label "ACKR2^ENSG00000144648.16" ; ID "ACKR2--PCSK2^ACKR2^ENSG00000144648.16" ; ccdsid "CCDS2706.1" ; exon_id "ENSE00003845476.1" ; exon_number 3 ; gene_id "ACKR2--PCSK2^ACKR2^ENSG00000144648.16" ; gene_name ACKR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000186377.5" ; havana_transcript "OTTHUMT00000256645.3" ; hgnc_id "HGNC:1565" ; level 2 ; orig_coord_info "chr3,42864503,42865654,+" ; protein_id "ENSP00000416996.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACKR2--PCSK2^ENST00000422265.6" ; transcript_name "ACKR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACKR2--PCSK2 HAVANA mRNA 3172 16532 . + . FI_gene_label "ACKR2^ENSG00000144648.16" ; ID "ACKR2--PCSK2^ENST00000422265.6" ; Parent "ACKR2--PCSK2^ACKR2^ENSG00000144648.16" ; ccdsid "CCDS2706.1" ; exon_id "ENSE00003845476.1" ; exon_number 3 ; gene_id "ACKR2--PCSK2^ACKR2^ENSG00000144648.16" ; gene_name ACKR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000186377.5" ; havana_transcript "OTTHUMT00000256645.3" ; hgnc_id "HGNC:1565" ; level 2 ; orig_coord_info "chr3,42864503,42865654,+" ; protein_id "ENSP00000416996.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACKR2--PCSK2^ENST00000422265.6" ; transcript_name "ACKR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
APBB2--GNAS HAVANA gene 53563 67319 . + . FI_gene_label "GNAS^ENSG00000087460.28" ; ID "APBB2--GNAS^GNAS^ENSG00000087460.28" ; ccdsid "CCDS42892.1" ; exon_id "ENSE00001831111.1" ; exon_number 1 ; gene_id "APBB2--GNAS^GNAS^ENSG00000087460.28" ; gene_name GNAS ; gene_type protein_coding ; havana_gene "OTTHUMG00000033069.23" ; havana_transcript "OTTHUMT00000080451.1" ; hgnc_id "HGNC:4392" ; level 2 ; orig_coord_info "chr20,58891727,58891865,+" ; protein_id "ENSP00000265620.7" ; tag basic appris_principal_3 CCDS ; transcript_id "APBB2--GNAS^ENST00000265620.11" ; transcript_name "GNAS-201" ; transcript_support_level 1 ; transcript_type protein_coding
APBB2--GNAS HAVANA mRNA 53563 67319 . + . FI_gene_label "GNAS^ENSG00000087460.28" ; ID "APBB2--GNAS^ENST00000265620.11" ; Parent "APBB2--GNAS^GNAS^ENSG00000087460.28" ; ccdsid "CCDS42892.1" ; exon_id "ENSE00001831111.1" ; exon_number 1 ; gene_id "APBB2--GNAS^GNAS^ENSG00000087460.28" ; gene_name GNAS ; gene_type protein_coding ; havana_gene "OTTHUMG00000033069.23" ; havana_transcript "OTTHUMT00000080451.1" ; hgnc_id "HGNC:4392" ; level 2 ; orig_coord_info "chr20,58891727,58891865,+" ; protein_id "ENSP00000265620.7" ; tag basic appris_principal_3 CCDS ; transcript_id "APBB2--GNAS^ENST00000265620.11" ; transcript_name "GNAS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
APBB2--GNAS HAVANA gene 2210 37225 . + . FI_gene_label "APBB2^ENSG00000163697.17" ; ID "APBB2--GNAS^APBB2^ENSG00000163697.17" ; ccdsid "CCDS54761.1" ; exon_id "ENSE00001308464.1" ; exon_number 5 ; gene_id "APBB2--GNAS^APBB2^ENSG00000163697.17" ; gene_name APBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160416.12" ; havana_transcript "OTTHUMT00000360523.3" ; hgnc_id "HGNC:582" ; level 2 ; orig_coord_info "chr4,41033236,41033254,-" ; protein_id "ENSP00000295974.8" ; tag basic appris_alternative_1 CCDS ; transcript_id "APBB2--GNAS^ENST00000295974.12" ; transcript_name "APBB2-201" ; transcript_support_level 2 ; transcript_type protein_coding
APBB2--GNAS HAVANA mRNA 2210 37225 . + . FI_gene_label "APBB2^ENSG00000163697.17" ; ID "APBB2--GNAS^ENST00000295974.12" ; Parent "APBB2--GNAS^APBB2^ENSG00000163697.17" ; ccdsid "CCDS54761.1" ; exon_id "ENSE00001308464.1" ; exon_number 5 ; gene_id "APBB2--GNAS^APBB2^ENSG00000163697.17" ; gene_name APBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160416.12" ; havana_transcript "OTTHUMT00000360523.3" ; hgnc_id "HGNC:582" ; level 2 ; orig_coord_info "chr4,41033236,41033254,-" ; protein_id "ENSP00000295974.8" ; tag basic appris_alternative_1 CCDS ; transcript_id "APBB2--GNAS^ENST00000295974.12" ; transcript_name "APBB2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
C1QTNF3--AMACR HAVANA gene 1001 8952 . + . FI_gene_label "C1QTNF3^ENSG00000082196.21" ; ID "C1QTNF3--AMACR^C1QTNF3^ENSG00000082196.21" ; ccdsid "CCDS3904.1" ; exon_id "ENSE00001898423.1" ; exon_number 1 ; gene_id "C1QTNF3--AMACR^C1QTNF3^ENSG00000082196.21" ; gene_name C1QTNF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090735.5" ; havana_transcript "OTTHUMT00000207469.1" ; hgnc_id "HGNC:14326" ; level 2 ; orig_coord_info "chr5,34043042,34043125,-" ; protein_id "ENSP00000231338.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "C1QTNF3--AMACR^ENST00000231338.7" ; transcript_name "C1QTNF3-201" ; transcript_support_level 1 ; transcript_type protein_coding
C1QTNF3--AMACR HAVANA mRNA 1001 8952 . + . FI_gene_label "C1QTNF3^ENSG00000082196.21" ; ID "C1QTNF3--AMACR^ENST00000231338.7" ; Parent "C1QTNF3--AMACR^C1QTNF3^ENSG00000082196.21" ; ccdsid "CCDS3904.1" ; exon_id "ENSE00001898423.1" ; exon_number 1 ; gene_id "C1QTNF3--AMACR^C1QTNF3^ENSG00000082196.21" ; gene_name C1QTNF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090735.5" ; havana_transcript "OTTHUMT00000207469.1" ; hgnc_id "HGNC:14326" ; level 2 ; orig_coord_info "chr5,34043042,34043125,-" ; protein_id "ENSP00000231338.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "C1QTNF3--AMACR^ENST00000231338.7" ; transcript_name "C1QTNF3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C1QTNF3--AMACR HAVANA gene 13602 24394 . + . FI_gene_label "AMACR^ENSG00000242110.8" ; ID "C1QTNF3--AMACR^AMACR^ENSG00000242110.8" ; ccdsid "CCDS3902.1" ; exon_id "ENSE00001953485.2" ; exon_number 1 ; gene_id "C1QTNF3--AMACR^AMACR^ENSG00000242110.8" ; gene_name AMACR ; gene_type protein_coding ; havana_gene "OTTHUMG00000090734.3" ; havana_transcript "OTTHUMT00000207467.2" ; hgnc_id "HGNC:451" ; level 2 ; orig_coord_info "chr5,34007773,34008019,-" ; protein_id "ENSP00000334424.6" ; tag basic MANE_Select CCDS ; transcript_id "C1QTNF3--AMACR^ENST00000335606.11" ; transcript_name "AMACR-201" ; transcript_support_level 1 ; transcript_type protein_coding
C1QTNF3--AMACR HAVANA mRNA 13602 24394 . + . FI_gene_label "AMACR^ENSG00000242110.8" ; ID "C1QTNF3--AMACR^ENST00000335606.11" ; Parent "C1QTNF3--AMACR^AMACR^ENSG00000242110.8" ; ccdsid "CCDS3902.1" ; exon_id "ENSE00001953485.2" ; exon_number 1 ; gene_id "C1QTNF3--AMACR^AMACR^ENSG00000242110.8" ; gene_name AMACR ; gene_type protein_coding ; havana_gene "OTTHUMG00000090734.3" ; havana_transcript "OTTHUMT00000207467.2" ; hgnc_id "HGNC:451" ; level 2 ; orig_coord_info "chr5,34007773,34008019,-" ; protein_id "ENSP00000334424.6" ; tag basic MANE_Select CCDS ; transcript_id "C1QTNF3--AMACR^ENST00000335606.11" ; transcript_name "AMACR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^ENST00000239859.8" ; Parent "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^ENST00000317764.6" ; Parent "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CEP290--CLLU1 HAVANA gene 1001 62296 . + . FI_gene_label "CEP290^ENSG00000198707.17" ; ID "CEP290--CLLU1^CEP290^ENSG00000198707.17" ; exon_id "ENSE00001157902.5" ; exon_number 2 ; gene_id "CEP290--CLLU1^CEP290^ENSG00000198707.17" ; gene_name CEP290 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169871.7" ; hgnc_id "HGNC:29021" ; level 2 ; orig_coord_info "chr12,88141206,88141307,-" ; protein_id "ENSP00000308021.8" ; tag inferred_transcript_model RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "CEP290--CLLU1^ENST00000309041.12" ; transcript_name "CEP290-201" ; transcript_support_level 5 ; transcript_type protein_coding
CEP290--CLLU1 HAVANA mRNA 1001 62296 . + . FI_gene_label "CEP290^ENSG00000198707.17" ; ID "CEP290--CLLU1^ENST00000309041.12" ; Parent "CEP290--CLLU1^CEP290^ENSG00000198707.17" ; exon_id "ENSE00001157902.5" ; exon_number 2 ; gene_id "CEP290--CLLU1^CEP290^ENSG00000198707.17" ; gene_name CEP290 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169871.7" ; hgnc_id "HGNC:29021" ; level 2 ; orig_coord_info "chr12,88141206,88141307,-" ; protein_id "ENSP00000308021.8" ; tag inferred_transcript_model RNA_Seq_supported_only basic appris_alternative_2 ; transcript_id "CEP290--CLLU1^ENST00000309041.12" ; transcript_name "CEP290-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
EWSR1--FLI1 ENSEMBL gene 27199 43894 . + . FI_gene_label "FLI1^ENSG00000151702.17" ; ID "EWSR1--FLI1^FLI1^ENSG00000151702.17" ; ccdsid "CCDS59231.1" ; exon_id "ENSE00001369506.4" ; exon_number 3 ; gene_id "EWSR1--FLI1^FLI1^ENSG00000151702.17" ; gene_name FLI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165792.5" ; hgnc_id "HGNC:3749" ; level 3 ; orig_coord_info "chr11,128764790,128764821,+" ; protein_id "ENSP00000281428.8" ; tag basic CCDS ; transcript_id "EWSR1--FLI1^ENST00000281428.12" ; transcript_name "FLI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EWSR1--FLI1 ENSEMBL mRNA 27199 43894 . + . FI_gene_label "FLI1^ENSG00000151702.17" ; ID "EWSR1--FLI1^ENST00000281428.12" ; Parent "EWSR1--FLI1^FLI1^ENSG00000151702.17" ; ccdsid "CCDS59231.1" ; exon_id "ENSE00001369506.4" ; exon_number 3 ; gene_id "EWSR1--FLI1^FLI1^ENSG00000151702.17" ; gene_name FLI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165792.5" ; hgnc_id "HGNC:3749" ; level 3 ; orig_coord_info "chr11,128764790,128764821,+" ; protein_id "ENSP00000281428.8" ; tag basic CCDS ; transcript_id "EWSR1--FLI1^ENST00000281428.12" ; transcript_name "FLI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EWSR1--FLI1 HAVANA gene 1283 22097 . + . FI_gene_label "EWSR1^ENSG00000182944.18" ; ID "EWSR1--FLI1^EWSR1^ENSG00000182944.18" ; exon_id "ENSE00001930494.1" ; exon_number 1 ; gene_id "EWSR1--FLI1^EWSR1^ENSG00000182944.18" ; gene_name EWSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151107.9" ; havana_transcript "OTTHUMT00000321351.1" ; hgnc_id "HGNC:3508" ; level 2 ; orig_coord_info "chr22,29268337,29268349,+" ; protein_id "ENSP00000330516.7" ; tag not_organism_supported basic ; transcript_id "EWSR1--FLI1^ENST00000331029.11" ; transcript_name "EWSR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
EWSR1--FLI1 HAVANA mRNA 1283 22097 . + . FI_gene_label "EWSR1^ENSG00000182944.18" ; ID "EWSR1--FLI1^ENST00000331029.11" ; Parent "EWSR1--FLI1^EWSR1^ENSG00000182944.18" ; exon_id "ENSE00001930494.1" ; exon_number 1 ; gene_id "EWSR1--FLI1^EWSR1^ENSG00000182944.18" ; gene_name EWSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151107.9" ; havana_transcript "OTTHUMT00000321351.1" ; hgnc_id "HGNC:3508" ; level 2 ; orig_coord_info "chr22,29268337,29268349,+" ; protein_id "ENSP00000330516.7" ; tag not_organism_supported basic ; transcript_id "EWSR1--FLI1^ENST00000331029.11" ; transcript_name "EWSR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
FAM168A--PGA5 HAVANA gene 1001 18260 . + . FI_gene_label "FAM168A^ENSG00000054965.11" ; ID "FAM168A--PGA5^FAM168A^ENSG00000054965.11" ; ccdsid "CCDS73346.1" ; exon_id "ENSE00003483884.1" ; exon_number 2 ; gene_id "FAM168A--PGA5^FAM168A^ENSG00000054965.11" ; gene_name FAM168A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167995.2" ; havana_transcript "OTTHUMT00000397424.1" ; hgnc_id "HGNC:28999" ; level 2 ; orig_coord_info "chr11,73468405,73468474,-" ; protein_id "ENSP00000064778.4" ; tag basic CCDS ; transcript_id "FAM168A--PGA5^ENST00000064778.8" ; transcript_name "FAM168A-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM168A--PGA5 HAVANA mRNA 1001 18260 . + . FI_gene_label "FAM168A^ENSG00000054965.11" ; ID "FAM168A--PGA5^ENST00000064778.8" ; Parent "FAM168A--PGA5^FAM168A^ENSG00000054965.11" ; ccdsid "CCDS73346.1" ; exon_id "ENSE00003483884.1" ; exon_number 2 ; gene_id "FAM168A--PGA5^FAM168A^ENSG00000054965.11" ; gene_name FAM168A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167995.2" ; havana_transcript "OTTHUMT00000397424.1" ; hgnc_id "HGNC:28999" ; level 2 ; orig_coord_info "chr11,73468405,73468474,-" ; protein_id "ENSP00000064778.4" ; tag basic CCDS ; transcript_id "FAM168A--PGA5^ENST00000064778.8" ; transcript_name "FAM168A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FAM168A--PGA5 HAVANA gene 21261 29527 . + . FI_gene_label "PGA5^ENSG00000256713.8" ; ID "FAM168A--PGA5^PGA5^ENSG00000256713.8" ; ccdsid "CCDS8001.1" ; exon_id "ENSE00002497124.2" ; exon_number 1 ; gene_id "FAM168A--PGA5^PGA5^ENSG00000256713.8" ; gene_name PGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168075.3" ; havana_transcript "OTTHUMT00000397972.1" ; hgnc_id "HGNC:8887" ; level 2 ; orig_coord_info "chr11,61241227,61241282,+" ; protein_id "ENSP00000309542.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAM168A--PGA5^ENST00000312403.10" ; transcript_name "PGA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM168A--PGA5 HAVANA mRNA 21261 29527 . + . FI_gene_label "PGA5^ENSG00000256713.8" ; ID "FAM168A--PGA5^ENST00000312403.10" ; Parent "FAM168A--PGA5^PGA5^ENSG00000256713.8" ; ccdsid "CCDS8001.1" ; exon_id "ENSE00002497124.2" ; exon_number 1 ; gene_id "FAM168A--PGA5^PGA5^ENSG00000256713.8" ; gene_name PGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168075.3" ; havana_transcript "OTTHUMT00000397972.1" ; hgnc_id "HGNC:8887" ; level 2 ; orig_coord_info "chr11,61241227,61241282,+" ; protein_id "ENSP00000309542.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAM168A--PGA5^ENST00000312403.10" ; transcript_name "PGA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FLI1--EWSR1 ENSEMBL gene 3102 19797 . + . FI_gene_label "FLI1^ENSG00000151702.17" ; ID "FLI1--EWSR1^FLI1^ENSG00000151702.17" ; ccdsid "CCDS59231.1" ; exon_id "ENSE00001369506.4" ; exon_number 3 ; gene_id "FLI1--EWSR1^FLI1^ENSG00000151702.17" ; gene_name FLI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165792.5" ; hgnc_id "HGNC:3749" ; level 3 ; orig_coord_info "chr11,128764790,128764821,+" ; protein_id "ENSP00000281428.8" ; tag basic CCDS ; transcript_id "FLI1--EWSR1^ENST00000281428.12" ; transcript_name "FLI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FLI1--EWSR1 ENSEMBL mRNA 3102 19797 . + . FI_gene_label "FLI1^ENSG00000151702.17" ; ID "FLI1--EWSR1^ENST00000281428.12" ; Parent "FLI1--EWSR1^FLI1^ENSG00000151702.17" ; ccdsid "CCDS59231.1" ; exon_id "ENSE00001369506.4" ; exon_number 3 ; gene_id "FLI1--EWSR1^FLI1^ENSG00000151702.17" ; gene_name FLI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165792.5" ; hgnc_id "HGNC:3749" ; level 3 ; orig_coord_info "chr11,128764790,128764821,+" ; protein_id "ENSP00000281428.8" ; tag basic CCDS ; transcript_id "FLI1--EWSR1^ENST00000281428.12" ; transcript_name "FLI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FLI1--EWSR1 HAVANA gene 23081 43895 . + . FI_gene_label "EWSR1^ENSG00000182944.18" ; ID "FLI1--EWSR1^EWSR1^ENSG00000182944.18" ; exon_id "ENSE00001930494.1" ; exon_number 1 ; gene_id "FLI1--EWSR1^EWSR1^ENSG00000182944.18" ; gene_name EWSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151107.9" ; havana_transcript "OTTHUMT00000321351.1" ; hgnc_id "HGNC:3508" ; level 2 ; orig_coord_info "chr22,29268337,29268349,+" ; protein_id "ENSP00000330516.7" ; tag not_organism_supported basic ; transcript_id "FLI1--EWSR1^ENST00000331029.11" ; transcript_name "EWSR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
FLI1--EWSR1 HAVANA mRNA 23081 43895 . + . FI_gene_label "EWSR1^ENSG00000182944.18" ; ID "FLI1--EWSR1^ENST00000331029.11" ; Parent "FLI1--EWSR1^EWSR1^ENSG00000182944.18" ; exon_id "ENSE00001930494.1" ; exon_number 1 ; gene_id "FLI1--EWSR1^EWSR1^ENSG00000182944.18" ; gene_name EWSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151107.9" ; havana_transcript "OTTHUMT00000321351.1" ; hgnc_id "HGNC:3508" ; level 2 ; orig_coord_info "chr22,29268337,29268349,+" ; protein_id "ENSP00000330516.7" ; tag not_organism_supported basic ; transcript_id "FLI1--EWSR1^ENST00000331029.11" ; transcript_name "EWSR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GNAS--APBB2 HAVANA gene 14338 28094 . + . FI_gene_label "GNAS^ENSG00000087460.28" ; ID "GNAS--APBB2^GNAS^ENSG00000087460.28" ; ccdsid "CCDS42892.1" ; exon_id "ENSE00001831111.1" ; exon_number 1 ; gene_id "GNAS--APBB2^GNAS^ENSG00000087460.28" ; gene_name GNAS ; gene_type protein_coding ; havana_gene "OTTHUMG00000033069.23" ; havana_transcript "OTTHUMT00000080451.1" ; hgnc_id "HGNC:4392" ; level 2 ; orig_coord_info "chr20,58891727,58891865,+" ; protein_id "ENSP00000265620.7" ; tag basic appris_principal_3 CCDS ; transcript_id "GNAS--APBB2^ENST00000265620.11" ; transcript_name "GNAS-201" ; transcript_support_level 1 ; transcript_type protein_coding
GNAS--APBB2 HAVANA mRNA 14338 28094 . + . FI_gene_label "GNAS^ENSG00000087460.28" ; ID "GNAS--APBB2^ENST00000265620.11" ; Parent "GNAS--APBB2^GNAS^ENSG00000087460.28" ; ccdsid "CCDS42892.1" ; exon_id "ENSE00001831111.1" ; exon_number 1 ; gene_id "GNAS--APBB2^GNAS^ENSG00000087460.28" ; gene_name GNAS ; gene_type protein_coding ; havana_gene "OTTHUMG00000033069.23" ; havana_transcript "OTTHUMT00000080451.1" ; hgnc_id "HGNC:4392" ; level 2 ; orig_coord_info "chr20,58891727,58891865,+" ; protein_id "ENSP00000265620.7" ; tag basic appris_principal_3 CCDS ; transcript_id "GNAS--APBB2^ENST00000265620.11" ; transcript_name "GNAS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GNAS--APBB2 HAVANA gene 32304 67319 . + . FI_gene_label "APBB2^ENSG00000163697.17" ; ID "GNAS--APBB2^APBB2^ENSG00000163697.17" ; ccdsid "CCDS54761.1" ; exon_id "ENSE00001308464.1" ; exon_number 5 ; gene_id "GNAS--APBB2^APBB2^ENSG00000163697.17" ; gene_name APBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160416.12" ; havana_transcript "OTTHUMT00000360523.3" ; hgnc_id "HGNC:582" ; level 2 ; orig_coord_info "chr4,41033236,41033254,-" ; protein_id "ENSP00000295974.8" ; tag basic appris_alternative_1 CCDS ; transcript_id "GNAS--APBB2^ENST00000295974.12" ; transcript_name "APBB2-201" ; transcript_support_level 2 ; transcript_type protein_coding
GNAS--APBB2 HAVANA mRNA 32304 67319 . + . FI_gene_label "APBB2^ENSG00000163697.17" ; ID "GNAS--APBB2^ENST00000295974.12" ; Parent "GNAS--APBB2^APBB2^ENSG00000163697.17" ; ccdsid "CCDS54761.1" ; exon_id "ENSE00001308464.1" ; exon_number 5 ; gene_id "GNAS--APBB2^APBB2^ENSG00000163697.17" ; gene_name APBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160416.12" ; havana_transcript "OTTHUMT00000360523.3" ; hgnc_id "HGNC:582" ; level 2 ; orig_coord_info "chr4,41033236,41033254,-" ; protein_id "ENSP00000295974.8" ; tag basic appris_alternative_1 CCDS ; transcript_id "GNAS--APBB2^ENST00000295974.12" ; transcript_name "APBB2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
INSC--CALCB HAVANA gene 31169 35080 . + . FI_gene_label "CALCB^ENSG00000175868.14" ; ID "INSC--CALCB^CALCB^ENSG00000175868.14" ; ccdsid "CCDS7820.1" ; exon_id "ENSE00003509258.1" ; exon_number 2 ; gene_id "INSC--CALCB^CALCB^ENSG00000175868.14" ; gene_name CALCB ; gene_type protein_coding ; havana_gene "OTTHUMG00000164629.24" ; havana_transcript "OTTHUMT00000379451.2" ; hgnc_id "HGNC:1438" ; level 2 ; orig_coord_info "chr11,15074719,15074804,+" ; protein_id "ENSP00000346017.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "INSC--CALCB^ENST00000324229.11" ; transcript_name "CALCB-201" ; transcript_support_level 1 ; transcript_type protein_coding
INSC--CALCB HAVANA mRNA 31169 35080 . + . FI_gene_label "CALCB^ENSG00000175868.14" ; ID "INSC--CALCB^ENST00000324229.11" ; Parent "INSC--CALCB^CALCB^ENSG00000175868.14" ; ccdsid "CCDS7820.1" ; exon_id "ENSE00003509258.1" ; exon_number 2 ; gene_id "INSC--CALCB^CALCB^ENSG00000175868.14" ; gene_name CALCB ; gene_type protein_coding ; havana_gene "OTTHUMG00000164629.24" ; havana_transcript "OTTHUMT00000379451.2" ; hgnc_id "HGNC:1438" ; level 2 ; orig_coord_info "chr11,15074719,15074804,+" ; protein_id "ENSP00000346017.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "INSC--CALCB^ENST00000324229.11" ; transcript_name "CALCB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
INSC--CALCB HAVANA gene 1001 20851 . + . FI_gene_label "INSC^ENSG00000188487.12" ; ID "INSC--CALCB^INSC^ENSG00000188487.12" ; ccdsid "CCDS41621.1" ; exon_id "ENSE00001538117.1" ; exon_number 1 ; gene_id "INSC--CALCB^INSC^ENSG00000188487.12" ; gene_name INSC ; gene_type protein_coding ; havana_gene "OTTHUMG00000165838.3" ; havana_transcript "OTTHUMT00000386590.1" ; hgnc_id "HGNC:33116" ; level 2 ; orig_coord_info "chr11,15112470,15112565,+" ; protein_id "ENSP00000368872.3" ; tag basic appris_principal_4 CCDS ; transcript_id "INSC--CALCB^ENST00000379554.7" ; transcript_name "INSC-201" ; transcript_support_level 1 ; transcript_type protein_coding
INSC--CALCB HAVANA mRNA 1001 20851 . + . FI_gene_label "INSC^ENSG00000188487.12" ; ID "INSC--CALCB^ENST00000379554.7" ; Parent "INSC--CALCB^INSC^ENSG00000188487.12" ; ccdsid "CCDS41621.1" ; exon_id "ENSE00001538117.1" ; exon_number 1 ; gene_id "INSC--CALCB^INSC^ENSG00000188487.12" ; gene_name INSC ; gene_type protein_coding ; havana_gene "OTTHUMG00000165838.3" ; havana_transcript "OTTHUMT00000386590.1" ; hgnc_id "HGNC:33116" ; level 2 ; orig_coord_info "chr11,15112470,15112565,+" ; protein_id "ENSP00000368872.3" ; tag basic appris_principal_4 CCDS ; transcript_id "INSC--CALCB^ENST00000379554.7" ; transcript_name "INSC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA2--PCDHA13 HAVANA gene 8189 16629 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA2--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA2--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA2--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA2--PCDHA13 HAVANA mRNA 8189 16629 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA2--PCDHA13^ENST00000289272.3" ; Parent "PCDHA2--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA2--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA2--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA2--PCDHA13 HAVANA gene 1001 3626 . + . FI_gene_label "PCDHA2^ENSG00000204969.7" ; ID "PCDHA2--PCDHA13^PCDHA2^ENSG00000204969.7" ; exon_id "ENSE00001476372.2" ; exon_number 1 ; gene_id "PCDHA2--PCDHA13^PCDHA2^ENSG00000204969.7" ; gene_name PCDHA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163363.5" ; havana_transcript "OTTHUMT00000477481.1" ; hgnc_id "HGNC:8668" ; level 2 ; orig_coord_info "chr5,140794965,140797436,+" ; protein_id "ENSP00000367372.1" ; tag basic ; transcript_id "PCDHA2--PCDHA13^ENST00000378132.2" ; transcript_name "PCDHA2-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA2--PCDHA13 HAVANA mRNA 1001 3626 . + . FI_gene_label "PCDHA2^ENSG00000204969.7" ; ID "PCDHA2--PCDHA13^ENST00000378132.2" ; Parent "PCDHA2--PCDHA13^PCDHA2^ENSG00000204969.7" ; exon_id "ENSE00001476372.2" ; exon_number 1 ; gene_id "PCDHA2--PCDHA13^PCDHA2^ENSG00000204969.7" ; gene_name PCDHA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163363.5" ; havana_transcript "OTTHUMT00000477481.1" ; hgnc_id "HGNC:8668" ; level 2 ; orig_coord_info "chr5,140794965,140797436,+" ; protein_id "ENSP00000367372.1" ; tag basic ; transcript_id "PCDHA2--PCDHA13^ENST00000378132.2" ; transcript_name "PCDHA2-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA2--PCDHAC1 HAVANA gene 8189 18204 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA2--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA2--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA2--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA2--PCDHAC1 HAVANA mRNA 8189 18204 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA2--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA2--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA2--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA2--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA2--PCDHAC1 HAVANA gene 1001 3626 . + . FI_gene_label "PCDHA2^ENSG00000204969.7" ; ID "PCDHA2--PCDHAC1^PCDHA2^ENSG00000204969.7" ; exon_id "ENSE00001476372.2" ; exon_number 1 ; gene_id "PCDHA2--PCDHAC1^PCDHA2^ENSG00000204969.7" ; gene_name PCDHA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163363.5" ; havana_transcript "OTTHUMT00000477481.1" ; hgnc_id "HGNC:8668" ; level 2 ; orig_coord_info "chr5,140794965,140797436,+" ; protein_id "ENSP00000367372.1" ; tag basic ; transcript_id "PCDHA2--PCDHAC1^ENST00000378132.2" ; transcript_name "PCDHA2-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA2--PCDHAC1 HAVANA mRNA 1001 3626 . + . FI_gene_label "PCDHA2^ENSG00000204969.7" ; ID "PCDHA2--PCDHAC1^ENST00000378132.2" ; Parent "PCDHA2--PCDHAC1^PCDHA2^ENSG00000204969.7" ; exon_id "ENSE00001476372.2" ; exon_number 1 ; gene_id "PCDHA2--PCDHAC1^PCDHA2^ENSG00000204969.7" ; gene_name PCDHA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163363.5" ; havana_transcript "OTTHUMT00000477481.1" ; hgnc_id "HGNC:8668" ; level 2 ; orig_coord_info "chr5,140794965,140797436,+" ; protein_id "ENSP00000367372.1" ; tag basic ; transcript_id "PCDHA2--PCDHAC1^ENST00000378132.2" ; transcript_name "PCDHA2-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA2--PCDHAC2 HAVANA gene 8195 18930 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA2--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA2--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA2--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA2--PCDHAC2 HAVANA mRNA 8195 18930 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA2--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA2--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA2--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA2--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA2--PCDHAC2 HAVANA gene 1001 3626 . + . FI_gene_label "PCDHA2^ENSG00000204969.7" ; ID "PCDHA2--PCDHAC2^PCDHA2^ENSG00000204969.7" ; exon_id "ENSE00001476372.2" ; exon_number 1 ; gene_id "PCDHA2--PCDHAC2^PCDHA2^ENSG00000204969.7" ; gene_name PCDHA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163363.5" ; havana_transcript "OTTHUMT00000477481.1" ; hgnc_id "HGNC:8668" ; level 2 ; orig_coord_info "chr5,140794965,140797436,+" ; protein_id "ENSP00000367372.1" ; tag basic ; transcript_id "PCDHA2--PCDHAC2^ENST00000378132.2" ; transcript_name "PCDHA2-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA2--PCDHAC2 HAVANA mRNA 1001 3626 . + . FI_gene_label "PCDHA2^ENSG00000204969.7" ; ID "PCDHA2--PCDHAC2^ENST00000378132.2" ; Parent "PCDHA2--PCDHAC2^PCDHA2^ENSG00000204969.7" ; exon_id "ENSE00001476372.2" ; exon_number 1 ; gene_id "PCDHA2--PCDHAC2^PCDHA2^ENSG00000204969.7" ; gene_name PCDHA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163363.5" ; havana_transcript "OTTHUMT00000477481.1" ; hgnc_id "HGNC:8668" ; level 2 ; orig_coord_info "chr5,140794965,140797436,+" ; protein_id "ENSP00000367372.1" ; tag basic ; transcript_id "PCDHA2--PCDHAC2^ENST00000378132.2" ; transcript_name "PCDHA2-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PSG8--CD177 HAVANA gene 2137 8719 . + . FI_gene_label "PSG8^ENSG00000124467.19" ; ID "PSG8--CD177^PSG8^ENSG00000124467.19" ; ccdsid "CCDS33037.1" ; exon_id "ENSE00003163264.1" ; exon_number 1 ; gene_id "PSG8--CD177^PSG8^ENSG00000124467.19" ; gene_name PSG8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151118.3" ; havana_transcript "OTTHUMT00000464526.1" ; hgnc_id "HGNC:9525" ; level 2 ; orig_coord_info "chr19,42765518,42765581,-" ; protein_id "ENSP00000305005.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PSG8--CD177^ENST00000306511.5" ; transcript_name "PSG8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PSG8--CD177 HAVANA mRNA 2137 8719 . + . FI_gene_label "PSG8^ENSG00000124467.19" ; ID "PSG8--CD177^ENST00000306511.5" ; Parent "PSG8--CD177^PSG8^ENSG00000124467.19" ; ccdsid "CCDS33037.1" ; exon_id "ENSE00003163264.1" ; exon_number 1 ; gene_id "PSG8--CD177^PSG8^ENSG00000124467.19" ; gene_name PSG8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151118.3" ; havana_transcript "OTTHUMT00000464526.1" ; hgnc_id "HGNC:9525" ; level 2 ; orig_coord_info "chr19,42765518,42765581,-" ; protein_id "ENSP00000305005.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PSG8--CD177^ENST00000306511.5" ; transcript_name "PSG8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PSG8--CD177 HAVANA gene 13296 18797 . + . FI_gene_label "CD177^ENSG00000204936.10" ; ID "PSG8--CD177^CD177^ENSG00000204936.10" ; exon_id "ENSE00003739430.1" ; exon_number 1 ; gene_id "PSG8--CD177^CD177^ENSG00000204936.10" ; gene_name CD177 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185320.4" ; havana_transcript "OTTHUMT00000470164.2" ; hgnc_id "HGNC:30072" ; level 2 ; orig_coord_info "chr19,43353715,43353766,+" ; protein_id "ENSP00000367251.2" ; transcript_id "PSG8--CD177^ENST00000378012.3" ; transcript_name "CD177-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
PSG8--CD177 HAVANA mRNA 13296 18797 . + . FI_gene_label "CD177^ENSG00000204936.10" ; ID "PSG8--CD177^ENST00000378012.3" ; Parent "PSG8--CD177^CD177^ENSG00000204936.10" ; exon_id "ENSE00003739430.1" ; exon_number 1 ; gene_id "PSG8--CD177^CD177^ENSG00000204936.10" ; gene_name CD177 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185320.4" ; havana_transcript "OTTHUMT00000470164.2" ; hgnc_id "HGNC:30072" ; level 2 ; orig_coord_info "chr19,43353715,43353766,+" ; protein_id "ENSP00000367251.2" ; transcript_id "PSG8--CD177^ENST00000378012.3" ; transcript_name "CD177-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
RPS6KA5--TTC7B HAVANA gene 51022 98534 . + . FI_gene_label "TTC7B^ENSG00000165914.15" ; ID "RPS6KA5--TTC7B^TTC7B^ENSG00000165914.15" ; ccdsid "CCDS32140.1" ; exon_id "ENSE00002693320.2" ; exon_number 1 ; gene_id "RPS6KA5--TTC7B^TTC7B^ENSG00000165914.15" ; gene_name TTC7B ; gene_type protein_coding ; havana_gene "OTTHUMG00000171047.5" ; havana_transcript "OTTHUMT00000411364.4" ; hgnc_id "HGNC:19858" ; level 2 ; orig_coord_info "chr14,90816175,90816295,-" ; protein_id "ENSP00000336127.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS6KA5--TTC7B^ENST00000328459.11" ; transcript_name "TTC7B-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KA5--TTC7B HAVANA mRNA 51022 98534 . + . FI_gene_label "TTC7B^ENSG00000165914.15" ; ID "RPS6KA5--TTC7B^ENST00000328459.11" ; Parent "RPS6KA5--TTC7B^TTC7B^ENSG00000165914.15" ; ccdsid "CCDS32140.1" ; exon_id "ENSE00002693320.2" ; exon_number 1 ; gene_id "RPS6KA5--TTC7B^TTC7B^ENSG00000165914.15" ; gene_name TTC7B ; gene_type protein_coding ; havana_gene "OTTHUMG00000171047.5" ; havana_transcript "OTTHUMT00000411364.4" ; hgnc_id "HGNC:19858" ; level 2 ; orig_coord_info "chr14,90816175,90816295,-" ; protein_id "ENSP00000336127.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS6KA5--TTC7B^ENST00000328459.11" ; transcript_name "TTC7B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KA5--TTC7B HAVANA gene 1042 18994 . + . FI_gene_label "RPS6KA5^ENSG00000100784.12" ; ID "RPS6KA5--TTC7B^RPS6KA5^ENSG00000100784.12" ; ccdsid "CCDS45149.1" ; exon_id "ENSE00002454214.1" ; exon_number 1 ; gene_id "RPS6KA5--TTC7B^RPS6KA5^ENSG00000100784.12" ; gene_name RPS6KA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171055.6" ; havana_transcript "OTTHUMT00000411444.1" ; hgnc_id "HGNC:10434" ; level 2 ; orig_coord_info "chr14,91060332,91060434,-" ; protein_id "ENSP00000402787.2" ; tag basic CCDS ; transcript_id "RPS6KA5--TTC7B^ENST00000418736.6" ; transcript_name "RPS6KA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KA5--TTC7B HAVANA mRNA 1042 18994 . + . FI_gene_label "RPS6KA5^ENSG00000100784.12" ; ID "RPS6KA5--TTC7B^ENST00000418736.6" ; Parent "RPS6KA5--TTC7B^RPS6KA5^ENSG00000100784.12" ; ccdsid "CCDS45149.1" ; exon_id "ENSE00002454214.1" ; exon_number 1 ; gene_id "RPS6KA5--TTC7B^RPS6KA5^ENSG00000100784.12" ; gene_name RPS6KA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171055.6" ; havana_transcript "OTTHUMT00000411444.1" ; hgnc_id "HGNC:10434" ; level 2 ; orig_coord_info "chr14,91060332,91060434,-" ; protein_id "ENSP00000402787.2" ; tag basic CCDS ; transcript_id "RPS6KA5--TTC7B^ENST00000418736.6" ; transcript_name "RPS6KA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLCO5A1--ANK2 HAVANA gene 1001 20192 . + . FI_gene_label "SLCO5A1^ENSG00000137571.11" ; ID "SLCO5A1--ANK2^SLCO5A1^ENSG00000137571.11" ; ccdsid "CCDS6205.1" ; exon_id "ENSE00003525876.1" ; exon_number 2 ; gene_id "SLCO5A1--ANK2^SLCO5A1^ENSG00000137571.11" ; gene_name SLCO5A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165121.5" ; havana_transcript "OTTHUMT00000381990.4" ; hgnc_id "HGNC:19046" ; level 2 ; orig_coord_info "chr8,69831767,69832673,-" ; protein_id "ENSP00000260126.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLCO5A1--ANK2^ENST00000260126.9" ; transcript_name "SLCO5A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLCO5A1--ANK2 HAVANA mRNA 1001 20192 . + . FI_gene_label "SLCO5A1^ENSG00000137571.11" ; ID "SLCO5A1--ANK2^ENST00000260126.9" ; Parent "SLCO5A1--ANK2^SLCO5A1^ENSG00000137571.11" ; ccdsid "CCDS6205.1" ; exon_id "ENSE00003525876.1" ; exon_number 2 ; gene_id "SLCO5A1--ANK2^SLCO5A1^ENSG00000137571.11" ; gene_name SLCO5A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165121.5" ; havana_transcript "OTTHUMT00000381990.4" ; hgnc_id "HGNC:19046" ; level 2 ; orig_coord_info "chr8,69831767,69832673,-" ; protein_id "ENSP00000260126.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLCO5A1--ANK2^ENST00000260126.9" ; transcript_name "SLCO5A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLCO5A1--ANK2 HAVANA gene 27997 97963 . + . FI_gene_label "ANK2^ENSG00000145362.20" ; ID "SLCO5A1--ANK2^ANK2^ENSG00000145362.20" ; exon_id "ENSE00002170361.1" ; exon_number 1 ; gene_id "SLCO5A1--ANK2^ANK2^ENSG00000145362.20" ; gene_name ANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132912.13" ; havana_transcript "OTTHUMT00000386954.3" ; hgnc_id "HGNC:493" ; level 2 ; orig_coord_info "chr4,113049729,113049812,+" ; protein_id "ENSP00000264366.6" ; tag basic ; transcript_id "SLCO5A1--ANK2^ENST00000264366.10" ; transcript_name "ANK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
SLCO5A1--ANK2 HAVANA mRNA 27997 97963 . + . FI_gene_label "ANK2^ENSG00000145362.20" ; ID "SLCO5A1--ANK2^ENST00000264366.10" ; Parent "SLCO5A1--ANK2^ANK2^ENSG00000145362.20" ; exon_id "ENSE00002170361.1" ; exon_number 1 ; gene_id "SLCO5A1--ANK2^ANK2^ENSG00000145362.20" ; gene_name ANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132912.13" ; havana_transcript "OTTHUMT00000386954.3" ; hgnc_id "HGNC:493" ; level 2 ; orig_coord_info "chr4,113049729,113049812,+" ; protein_id "ENSP00000264366.6" ; tag basic ; transcript_id "SLCO5A1--ANK2^ENST00000264366.10" ; transcript_name "ANK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TAS2R14--PRR4 HAVANA gene 10349 13934 . + . FI_gene_label "PRR4^ENSG00000111215.12" ; ID "TAS2R14--PRR4^PRR4^ENSG00000111215.12" ; ccdsid "CCDS41756.1" ; exon_id "ENSE00003526535.1" ; exon_number 1 ; gene_id "TAS2R14--PRR4^PRR4^ENSG00000111215.12" ; gene_name PRR4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192575.1" ; havana_transcript "OTTHUMT00000400049.1" ; hgnc_id "HGNC:18020" ; level 2 ; orig_coord_info "chr12,10849374,10849437,-" ; protein_id "ENSP00000228811.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAS2R14--PRR4^ENST00000228811.8" ; transcript_name "PRR4-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAS2R14--PRR4 HAVANA mRNA 10349 13934 . + . FI_gene_label "PRR4^ENSG00000111215.12" ; ID "TAS2R14--PRR4^ENST00000228811.8" ; Parent "TAS2R14--PRR4^PRR4^ENSG00000111215.12" ; ccdsid "CCDS41756.1" ; exon_id "ENSE00003526535.1" ; exon_number 1 ; gene_id "TAS2R14--PRR4^PRR4^ENSG00000111215.12" ; gene_name PRR4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192575.1" ; havana_transcript "OTTHUMT00000400049.1" ; hgnc_id "HGNC:18020" ; level 2 ; orig_coord_info "chr12,10849374,10849437,-" ; protein_id "ENSP00000228811.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAS2R14--PRR4^ENST00000228811.8" ; transcript_name "PRR4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAS2R14--PRR4 HAVANA gene 5493 7346 . + . FI_gene_label "TAS2R14^ENSG00000212127.6" ; ID "TAS2R14--PRR4^TAS2R14^ENSG00000212127.6" ; ccdsid "CCDS8637.1" ; exon_id "ENSE00002238942.2" ; exon_number 1 ; gene_id "TAS2R14--PRR4^TAS2R14^ENSG00000212127.6" ; gene_name TAS2R14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162720.5" ; havana_transcript "OTTHUMT00000370194.5" ; hgnc_id "HGNC:14920" ; level 2 ; orig_coord_info "chr12,10938257,10939207,-" ; protein_id "ENSP00000441949.1" ; tag upstream_ATG basic appris_principal_1 CCDS ; transcript_id "TAS2R14--PRR4^ENST00000537503.2" ; transcript_name "TAS2R14-202" ; transcript_support_level NA ; transcript_type protein_coding
TAS2R14--PRR4 HAVANA mRNA 5493 7346 . + . FI_gene_label "TAS2R14^ENSG00000212127.6" ; ID "TAS2R14--PRR4^ENST00000537503.2" ; Parent "TAS2R14--PRR4^TAS2R14^ENSG00000212127.6" ; ccdsid "CCDS8637.1" ; exon_id "ENSE00002238942.2" ; exon_number 1 ; gene_id "TAS2R14--PRR4^TAS2R14^ENSG00000212127.6" ; gene_name TAS2R14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162720.5" ; havana_transcript "OTTHUMT00000370194.5" ; hgnc_id "HGNC:14920" ; level 2 ; orig_coord_info "chr12,10938257,10939207,-" ; protein_id "ENSP00000441949.1" ; tag upstream_ATG basic appris_principal_1 CCDS ; transcript_id "TAS2R14--PRR4^ENST00000537503.2" ; transcript_name "TAS2R14-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UBE2G1--TMCC1-AS1 HAVANA gene 1147 13539 . + . FI_gene_label "UBE2G1^ENSG00000132388.12" ; ID "UBE2G1--TMCC1-AS1^UBE2G1^ENSG00000132388.12" ; ccdsid "CCDS32532.1" ; exon_id "ENSE00002657238.1" ; exon_number 1 ; gene_id "UBE2G1--TMCC1-AS1^UBE2G1^ENSG00000132388.12" ; gene_name UBE2G1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177826.3" ; havana_transcript "OTTHUMT00000439099.1" ; hgnc_id "HGNC:12482" ; level 2 ; orig_coord_info "chr17,4366271,4366316,-" ; protein_id "ENSP00000380178.2" ; tag basic appris_principal_1 CCDS ; transcript_id "UBE2G1--TMCC1-AS1^ENST00000396981.6" ; transcript_name "UBE2G1-201" ; transcript_support_level 1 ; transcript_type protein_coding
UBE2G1--TMCC1-AS1 HAVANA mRNA 1147 13539 . + . FI_gene_label "UBE2G1^ENSG00000132388.12" ; ID "UBE2G1--TMCC1-AS1^ENST00000396981.6" ; Parent "UBE2G1--TMCC1-AS1^UBE2G1^ENSG00000132388.12" ; ccdsid "CCDS32532.1" ; exon_id "ENSE00002657238.1" ; exon_number 1 ; gene_id "UBE2G1--TMCC1-AS1^UBE2G1^ENSG00000132388.12" ; gene_name UBE2G1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177826.3" ; havana_transcript "OTTHUMT00000439099.1" ; hgnc_id "HGNC:12482" ; level 2 ; orig_coord_info "chr17,4366271,4366316,-" ; protein_id "ENSP00000380178.2" ; tag basic appris_principal_1 CCDS ; transcript_id "UBE2G1--TMCC1-AS1^ENST00000396981.6" ; transcript_name "UBE2G1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZC3H4--AC073508.1 HAVANA gene 1001 19492 . + . FI_gene_label "ZC3H4^ENSG00000130749.10" ; ID "ZC3H4--AC073508.1^ZC3H4^ENSG00000130749.10" ; ccdsid "CCDS42582.1" ; exon_id "ENSE00001207487.1" ; exon_number 2 ; gene_id "ZC3H4--AC073508.1^ZC3H4^ENSG00000130749.10" ; gene_name ZC3H4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183442.2" ; havana_transcript "OTTHUMT00000466667.2" ; hgnc_id "HGNC:17808" ; level 2 ; orig_coord_info "chr19,47112424,47112584,-" ; protein_id "ENSP00000253048.4" ; tag non_canonical_U12 basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZC3H4--AC073508.1^ENST00000253048.10" ; transcript_name "ZC3H4-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZC3H4--AC073508.1 HAVANA mRNA 1001 19492 . + . FI_gene_label "ZC3H4^ENSG00000130749.10" ; ID "ZC3H4--AC073508.1^ENST00000253048.10" ; Parent "ZC3H4--AC073508.1^ZC3H4^ENSG00000130749.10" ; ccdsid "CCDS42582.1" ; exon_id "ENSE00001207487.1" ; exon_number 2 ; gene_id "ZC3H4--AC073508.1^ZC3H4^ENSG00000130749.10" ; gene_name ZC3H4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183442.2" ; havana_transcript "OTTHUMT00000466667.2" ; hgnc_id "HGNC:17808" ; level 2 ; orig_coord_info "chr19,47112424,47112584,-" ; protein_id "ENSP00000253048.4" ; tag non_canonical_U12 basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZC3H4--AC073508.1^ENST00000253048.10" ; transcript_name "ZC3H4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZMAT4--TNFRSF11B HAVANA gene 17692 25203 . + . FI_gene_label "TNFRSF11B^ENSG00000164761.9" ; ID "ZMAT4--TNFRSF11B^TNFRSF11B^ENSG00000164761.9" ; ccdsid "CCDS6326.1" ; exon_id "ENSE00001196110.5" ; exon_number 1 ; gene_id "ZMAT4--TNFRSF11B^TNFRSF11B^ENSG00000164761.9" ; gene_name TNFRSF11B ; gene_type protein_coding ; havana_gene "OTTHUMG00000164969.2" ; havana_transcript "OTTHUMT00000381220.2" ; hgnc_id "HGNC:11909" ; level 2 ; orig_coord_info "chr8,118951792,118951821,-" ; protein_id "ENSP00000297350.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZMAT4--TNFRSF11B^ENST00000297350.9" ; transcript_name "TNFRSF11B-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZMAT4--TNFRSF11B HAVANA mRNA 17692 25203 . + . FI_gene_label "TNFRSF11B^ENSG00000164761.9" ; ID "ZMAT4--TNFRSF11B^ENST00000297350.9" ; Parent "ZMAT4--TNFRSF11B^TNFRSF11B^ENSG00000164761.9" ; ccdsid "CCDS6326.1" ; exon_id "ENSE00001196110.5" ; exon_number 1 ; gene_id "ZMAT4--TNFRSF11B^TNFRSF11B^ENSG00000164761.9" ; gene_name TNFRSF11B ; gene_type protein_coding ; havana_gene "OTTHUMG00000164969.2" ; havana_transcript "OTTHUMT00000381220.2" ; hgnc_id "HGNC:11909" ; level 2 ; orig_coord_info "chr8,118951792,118951821,-" ; protein_id "ENSP00000297350.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZMAT4--TNFRSF11B^ENST00000297350.9" ; transcript_name "TNFRSF11B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZMAT4--TNFRSF11B HAVANA gene 1008 14691 . + . FI_gene_label "ZMAT4^ENSG00000165061.15" ; ID "ZMAT4--TNFRSF11B^ZMAT4^ENSG00000165061.15" ; ccdsid "CCDS34885.1" ; exon_id "ENSE00003606486.1" ; exon_number 2 ; gene_id "ZMAT4--TNFRSF11B^ZMAT4^ENSG00000165061.15" ; gene_name ZMAT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164049.3" ; havana_transcript "OTTHUMT00000376950.2" ; hgnc_id "HGNC:25844" ; level 2 ; orig_coord_info "chr8,40825575,40825676,-" ; protein_id "ENSP00000297737.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZMAT4--TNFRSF11B^ENST00000297737.11" ; transcript_name "ZMAT4-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZMAT4--TNFRSF11B HAVANA mRNA 1008 14691 . + . FI_gene_label "ZMAT4^ENSG00000165061.15" ; ID "ZMAT4--TNFRSF11B^ENST00000297737.11" ; Parent "ZMAT4--TNFRSF11B^ZMAT4^ENSG00000165061.15" ; ccdsid "CCDS34885.1" ; exon_id "ENSE00003606486.1" ; exon_number 2 ; gene_id "ZMAT4--TNFRSF11B^ZMAT4^ENSG00000165061.15" ; gene_name ZMAT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164049.3" ; havana_transcript "OTTHUMT00000376950.2" ; hgnc_id "HGNC:25844" ; level 2 ; orig_coord_info "chr8,40825575,40825676,-" ; protein_id "ENSP00000297737.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZMAT4--TNFRSF11B^ENST00000297737.11" ; transcript_name "ZMAT4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZNF875--PCSK2 HAVANA gene 26031 44434 . + . FI_gene_label "PCSK2^ENSG00000125851.10" ; ID "ZNF875--PCSK2^PCSK2^ENSG00000125851.10" ; ccdsid "CCDS13125.1" ; exon_id "ENSE00001163726.3" ; exon_number 1 ; gene_id "ZNF875--PCSK2^PCSK2^ENSG00000125851.10" ; gene_name PCSK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031941.6" ; havana_transcript "OTTHUMT00000078120.3" ; hgnc_id "HGNC:8744" ; level 2 ; orig_coord_info "chr20,17227306,17227482,+" ; protein_id "ENSP00000262545.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF875--PCSK2^ENST00000262545.7" ; transcript_name "PCSK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF875--PCSK2 HAVANA mRNA 26031 44434 . + . FI_gene_label "PCSK2^ENSG00000125851.10" ; ID "ZNF875--PCSK2^ENST00000262545.7" ; Parent "ZNF875--PCSK2^PCSK2^ENSG00000125851.10" ; ccdsid "CCDS13125.1" ; exon_id "ENSE00001163726.3" ; exon_number 1 ; gene_id "ZNF875--PCSK2^PCSK2^ENSG00000125851.10" ; gene_name PCSK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031941.6" ; havana_transcript "OTTHUMT00000078120.3" ; hgnc_id "HGNC:8744" ; level 2 ; orig_coord_info "chr20,17227306,17227482,+" ; protein_id "ENSP00000262545.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF875--PCSK2^ENST00000262545.7" ; transcript_name "PCSK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF875--PCSK2 HAVANA gene 10040 20910 . + . FI_gene_label "ZNF875^ENSG00000181666.18" ; ID "ZNF875--PCSK2^ZNF875^ENSG00000181666.18" ; ccdsid "CCDS12502.1" ; exon_id "ENSE00001337429.2" ; exon_number 3 ; gene_id "ZNF875--PCSK2^ZNF875^ENSG00000181666.18" ; gene_name ZNF875 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181937.8" ; havana_transcript "OTTHUMT00000458375.1" ; hgnc_id "HGNC:4928" ; level 2 ; orig_coord_info "chr19,37344685,37344774,+" ; protein_id "ENSP00000315505.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF875--PCSK2^ENST00000324411.8" ; transcript_name "ZNF875-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF875--PCSK2 HAVANA mRNA 10040 20910 . + . FI_gene_label "ZNF875^ENSG00000181666.18" ; ID "ZNF875--PCSK2^ENST00000324411.8" ; Parent "ZNF875--PCSK2^ZNF875^ENSG00000181666.18" ; ccdsid "CCDS12502.1" ; exon_id "ENSE00001337429.2" ; exon_number 3 ; gene_id "ZNF875--PCSK2^ZNF875^ENSG00000181666.18" ; gene_name ZNF875 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181937.8" ; havana_transcript "OTTHUMT00000458375.1" ; hgnc_id "HGNC:4928" ; level 2 ; orig_coord_info "chr19,37344685,37344774,+" ; protein_id "ENSP00000315505.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF875--PCSK2^ENST00000324411.8" ; transcript_name "ZNF875-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC007216.5--PDPR HAVANA gene 1001 1109 . + . FI_gene_label "AC007216.5^ENSG00000277458.1" ; ID "AC007216.5--PDPR^AC007216.5^ENSG00000277458.1" ; exon_id "ENSE00003732421.1" ; exon_number 1 ; gene_id "AC007216.5--PDPR^AC007216.5^ENSG00000277458.1" ; gene_name "AC007216.5" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187878.1" ; havana_transcript "OTTHUMT00000475654.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr16,11926199,11926307,+" ; tag basic ; transcript_id "AC007216.5--PDPR^ENST00000612457.1" ; transcript_name "AC007216.5-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AC007216.5--PDPR HAVANA RNA 1001 1109 . + . FI_gene_label "AC007216.5^ENSG00000277458.1" ; ID "AC007216.5--PDPR^ENST00000612457.1" ; Parent "AC007216.5--PDPR^AC007216.5^ENSG00000277458.1" ; exon_id "ENSE00003732421.1" ; exon_number 1 ; gene_id "AC007216.5--PDPR^AC007216.5^ENSG00000277458.1" ; gene_name "AC007216.5" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187878.1" ; havana_transcript "OTTHUMT00000475654.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr16,11926199,11926307,+" ; tag basic ; transcript_id "AC007216.5--PDPR^ENST00000612457.1" ; transcript_name "AC007216.5-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
AC096555.1--PCSK2 HAVANA gene 1001 5391 . + . FI_gene_label "AC096555.1^ENSG00000286152.1" ; ID "AC096555.1--PCSK2^AC096555.1^ENSG00000286152.1" ; exon_id "ENSE00003850462.1" ; exon_number 1 ; gene_id "AC096555.1--PCSK2^AC096555.1^ENSG00000286152.1" ; gene_name "AC096555.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193073.2" ; havana_transcript "OTTHUMT00000500074.2" ; level 2 ; orig_coord_info "chr2,184187473,184187573,-" ; tag basic ; transcript_id "AC096555.1--PCSK2^ENST00000652637.1" ; transcript_name "AC096555.1-201" ; transcript_type lncRNA
AC096555.1--PCSK2 HAVANA RNA 1001 5391 . + . FI_gene_label "AC096555.1^ENSG00000286152.1" ; ID "AC096555.1--PCSK2^ENST00000652637.1" ; Parent "AC096555.1--PCSK2^AC096555.1^ENSG00000286152.1" ; exon_id "ENSE00003850462.1" ; exon_number 1 ; gene_id "AC096555.1--PCSK2^AC096555.1^ENSG00000286152.1" ; gene_name "AC096555.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193073.2" ; havana_transcript "OTTHUMT00000500074.2" ; level 2 ; orig_coord_info "chr2,184187473,184187573,-" ; tag basic ; transcript_id "AC096555.1--PCSK2^ENST00000652637.1" ; transcript_name "AC096555.1-201" ; transcript_type lncRNA
L1 and L2 created:
AC138409.2--NAIP HAVANA gene 4397 11022 . + . FI_gene_label "AC138409.2^ENSG00000215158.9" ; ID "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; exon_id "ENSE00002080508.1" ; exon_number 1 ; gene_id "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; gene_name "AC138409.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000162181.1" ; havana_transcript "OTTHUMT00000367774.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr5,34218295,34218343,-" ; tag basic ; transcript_id "AC138409.2--NAIP^ENST00000507274.1" ; transcript_name "AC138409.2-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AC138409.2--NAIP HAVANA RNA 4397 11022 . + . FI_gene_label "AC138409.2^ENSG00000215158.9" ; ID "AC138409.2--NAIP^ENST00000507274.1" ; Parent "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; exon_id "ENSE00002080508.1" ; exon_number 1 ; gene_id "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; gene_name "AC138409.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000162181.1" ; havana_transcript "OTTHUMT00000367774.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr5,34218295,34218343,-" ; tag basic ; transcript_id "AC138409.2--NAIP^ENST00000507274.1" ; transcript_name "AC138409.2-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC139256.1--PDPR HAVANA gene 1001 5858 . + . FI_gene_label "AC139256.1^ENSG00000260735.2" ; ID "AC139256.1--PDPR^AC139256.1^ENSG00000260735.2" ; exon_id "ENSE00002588687.1" ; exon_number 1 ; gene_id "AC139256.1--PDPR^AC139256.1^ENSG00000260735.2" ; gene_name "AC139256.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000173204.2" ; havana_transcript "OTTHUMT00000422449.1" ; level 2 ; orig_coord_info "chr16,15094411,15094811,+" ; tag basic ; transcript_id "AC139256.1--PDPR^ENST00000569858.1" ; transcript_name "AC139256.1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
AC139256.1--PDPR HAVANA RNA 1001 5858 . + . FI_gene_label "AC139256.1^ENSG00000260735.2" ; ID "AC139256.1--PDPR^ENST00000569858.1" ; Parent "AC139256.1--PDPR^AC139256.1^ENSG00000260735.2" ; exon_id "ENSE00002588687.1" ; exon_number 1 ; gene_id "AC139256.1--PDPR^AC139256.1^ENSG00000260735.2" ; gene_name "AC139256.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000173204.2" ; havana_transcript "OTTHUMT00000422449.1" ; level 2 ; orig_coord_info "chr16,15094411,15094811,+" ; tag basic ; transcript_id "AC139256.1--PDPR^ENST00000569858.1" ; transcript_name "AC139256.1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created:
AC231759.2--XAGE2 HAVANA gene 1001 6160 . + . FI_gene_label "AC231759.2^ENSG00000287215.1" ; ID "AC231759.2--XAGE2^AC231759.2^ENSG00000287215.1" ; exon_id "ENSE00003866893.1" ; exon_number 1 ; gene_id "AC231759.2--XAGE2^AC231759.2^ENSG00000287215.1" ; gene_name "AC231759.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194747.1" ; havana_transcript "OTTHUMT00000521490.1" ; level 2 ; orig_coord_info "chrX,52265748,52265919,-" ; tag TAGENE ; transcript_id "AC231759.2--XAGE2^ENST00000654180.1" ; transcript_name "AC231759.2-203" ; transcript_type lncRNA
AC231759.2--XAGE2 HAVANA RNA 1001 6160 . + . FI_gene_label "AC231759.2^ENSG00000287215.1" ; ID "AC231759.2--XAGE2^ENST00000654180.1" ; Parent "AC231759.2--XAGE2^AC231759.2^ENSG00000287215.1" ; exon_id "ENSE00003866893.1" ; exon_number 1 ; gene_id "AC231759.2--XAGE2^AC231759.2^ENSG00000287215.1" ; gene_name "AC231759.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194747.1" ; havana_transcript "OTTHUMT00000521490.1" ; level 2 ; orig_coord_info "chrX,52265748,52265919,-" ; tag TAGENE ; transcript_id "AC231759.2--XAGE2^ENST00000654180.1" ; transcript_name "AC231759.2-203" ; transcript_type lncRNA
L1 and L2 created:
CEP290--CLLU1 HAVANA gene 67725 73067 . + . FI_gene_label "CLLU1^ENSG00000257127.6" ; ID "CEP290--CLLU1^CLLU1^ENSG00000257127.6" ; exon_id "ENSE00001477677.1" ; exon_number 1 ; gene_id "CEP290--CLLU1^CLLU1^ENSG00000257127.6" ; gene_name CLLU1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000170103.2" ; havana_transcript "OTTHUMT00000366643.1" ; hgnc_id "HGNC:29841" ; level 2 ; orig_coord_info "chr12,92423959,92425934,+" ; tag basic ; transcript_id "CEP290--CLLU1^ENST00000378485.1" ; transcript_name "CLLU1-201" ; transcript_support_level 1 ; transcript_type lncRNA
CEP290--CLLU1 HAVANA RNA 67725 73067 . + . FI_gene_label "CLLU1^ENSG00000257127.6" ; ID "CEP290--CLLU1^ENST00000378485.1" ; Parent "CEP290--CLLU1^CLLU1^ENSG00000257127.6" ; exon_id "ENSE00001477677.1" ; exon_number 1 ; gene_id "CEP290--CLLU1^CLLU1^ENSG00000257127.6" ; gene_name CLLU1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000170103.2" ; havana_transcript "OTTHUMT00000366643.1" ; hgnc_id "HGNC:29841" ; level 2 ; orig_coord_info "chr12,92423959,92425934,+" ; tag basic ; transcript_id "CEP290--CLLU1^ENST00000378485.1" ; transcript_name "CLLU1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
UBE2G1--TMCC1-AS1 HAVANA gene 16600 18359 . + . FI_gene_label "TMCC1-AS1^ENSG00000271270.7" ; ID "UBE2G1--TMCC1-AS1^TMCC1-AS1^ENSG00000271270.7" ; exon_id "ENSE00003480416.1" ; exon_number 1 ; gene_id "UBE2G1--TMCC1-AS1^TMCC1-AS1^ENSG00000271270.7" ; gene_name "TMCC1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185164.4" ; havana_transcript "OTTHUMT00000469707.2" ; hgnc_id "HGNC:49060" ; level 2 ; orig_coord_info "chr3,129893871,129893927,+" ; transcript_id "UBE2G1--TMCC1-AS1^ENST00000603884.5" ; transcript_name "TMCC1-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
UBE2G1--TMCC1-AS1 HAVANA RNA 16600 18359 . + . FI_gene_label "TMCC1-AS1^ENSG00000271270.7" ; ID "UBE2G1--TMCC1-AS1^ENST00000603884.5" ; Parent "UBE2G1--TMCC1-AS1^TMCC1-AS1^ENSG00000271270.7" ; exon_id "ENSE00003480416.1" ; exon_number 1 ; gene_id "UBE2G1--TMCC1-AS1^TMCC1-AS1^ENSG00000271270.7" ; gene_name "TMCC1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185164.4" ; havana_transcript "OTTHUMT00000469707.2" ; hgnc_id "HGNC:49060" ; level 2 ; orig_coord_info "chr3,129893871,129893927,+" ; transcript_id "UBE2G1--TMCC1-AS1^ENST00000603884.5" ; transcript_name "TMCC1-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
ZC3H4--AC073508.1 HAVANA gene 22493 24815 . + . FI_gene_label "AC073508.1^ENSG00000224244.1" ; ID "ZC3H4--AC073508.1^AC073508.1^ENSG00000224244.1" ; exon_id "ENSE00001682736.1" ; exon_number 1 ; gene_id "ZC3H4--AC073508.1^AC073508.1^ENSG00000224244.1" ; gene_name "AC073508.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000137366.1" ; havana_transcript "OTTHUMT00000267900.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr17,40689147,40689360,-" ; tag basic ; transcript_id "ZC3H4--AC073508.1^ENST00000428866.1" ; transcript_name "AC073508.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
ZC3H4--AC073508.1 HAVANA RNA 22493 24815 . + . FI_gene_label "AC073508.1^ENSG00000224244.1" ; ID "ZC3H4--AC073508.1^ENST00000428866.1" ; Parent "ZC3H4--AC073508.1^AC073508.1^ENSG00000224244.1" ; exon_id "ENSE00001682736.1" ; exon_number 1 ; gene_id "ZC3H4--AC073508.1^AC073508.1^ENSG00000224244.1" ; gene_name "AC073508.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000137366.1" ; havana_transcript "OTTHUMT00000267900.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr17,40689147,40689360,-" ; tag basic ; transcript_id "ZC3H4--AC073508.1^ENST00000428866.1" ; transcript_name "AC073508.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
677 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1575 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 1 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 42 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
Lets remove isoform SLCO5A1--ANK2^ENST00000673044.1
1 identical isoforms removed
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed