File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/ba5949e24e12ece69326fcde6d6218/.command.out
Size
1.4 KB
Attempt
  AIH curated blacklist: matched 0 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 33
  Pass (FILTER=PASS): 4 (12.1%)
  Fail (FILTER=FAIL): 29 (87.9%)

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 8
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 3
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 2
  total_reads_below_min(3.0<8.0): 1
  total_reads_below_min(6.0<8.0): 1
  total_reads_below_min(4.0<8.0): 1
  confidence_below_min(medium<high): 1
  confidence_below_min(low<high): 1
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 1

Breakdown by confidence:
  high: 4 pass, 3 fail (total: 7)
  low: 0 pass, 19 fail (total: 19)
  medium: 0 pass, 7 fail (total: 7)
Arriba filter: 33 rows -> 4 PASS; wrote 659_bMa-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered.tsv and 659_bMa-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_bMa-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filter_summary.txt