Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/06fd18017e7b36d58841010eb75b4e/659_epZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/ec1b2b60f200fcfea3a4b1a3241d0b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/ec1b2b60f200fcfea3a4b1a3241d0b/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory