Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/7b351d8ea47e284bb7ddbc8e502642/659_bTq-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/48d02458e266e7e4f965f54988b545/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/48d02458e266e7e4f965f54988b545/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/9db99f4569182b6013f8a3241901a4/659_bTq-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 330602319
[W::hts_idx_load3] The index file is older than the data file: 659_bTq-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	330602319
Known Splicing Events:	327091937
Partial Novel Splicing Events:	1909492
Novel Splicing Events:	1519456
Filtered Splicing Events:	81434

Total splicing  Junctions:	658747
Known Splicing Junctions:	297915
Partial Novel Splicing Junctions:	209894
Novel Splicing Junctions:	150938

===================================================================
Create BED file ...
Create Interact file ...