Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/4ffd465b8a44a9266863bd5dd73521/659_bQZ-T1-TRNA-1_B23MHV2LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/5e1f3bdd19f0d813f85c6f4ccf516e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/5e1f3bdd19f0d813f85c6f4ccf516e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/93ba6fb0568aef0719bd348a26ddbe/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_bQZ-T1-TRNA-1_B23MHV2LT4_1/abundance.h5
Successfully converted 659_bQZ-T1-TRNA-1_B23MHV2LT4_1/abundance.h5 to 659_bQZ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv
  Sample: 659_bQZ-T1-TRNA-1_B23MHV2LT4_1
  Mean Fragment Length: 145.9 bp
  Median Fragment Length: 137.0 bp
  pct_mito_est_counts: 0.008%
  pct_ribo_est_counts: 1.534%
  pct_hk_est_counts: 0.624%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.018%
  pct_ribo_tpm: 4.612%
  pct_hk_tpm: 0.948%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.005%