File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/9515ec02e73be29517baed00c892c7/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (659_bua-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/d374f2a1a0871c16feae3bea73d985/659_bua-T1-TRNA-1_B23MHV2LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/9515ec02e73be29517baed00c892c7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/9515ec02e73be29517baed00c892c7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/cec435dc9384082e0a5dab344b4319/659_bua-T1-TRNA-1_B23MHV2LT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_bua-T1-TRNA-1_B23MHV2LT4_1/abundance.h5
Successfully converted 659_bua-T1-TRNA-1_B23MHV2LT4_1/abundance.h5 to 659_bua-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv
  Sample: 659_bua-T1-TRNA-1_B23MHV2LT4_1
  Mean Fragment Length: 134.6 bp
  Median Fragment Length: 125.0 bp
  pct_mito_est_counts: 0.008%
  pct_ribo_est_counts: 0.799%
  pct_hk_est_counts: 0.602%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.019%
  pct_ribo_tpm: 2.551%
  pct_hk_tpm: 0.881%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.006%