Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/93195682299f49dfb9b69744cfcba3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/93195682299f49dfb9b69744cfcba3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/dde4de080fccda79d1586d5ef24e0f/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/ecd326546f2f66e7990b3d1c9b38e3/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (15839754) splicing reads. 266734 splicing junctions. 182585 known splicing junctions. 84149 novel splicing junctions.
sampling 10% (31679508) splicing reads. 327737 splicing junctions. 195138 known splicing junctions. 132599 novel splicing junctions.
sampling 15% (47519262) splicing reads. 370098 splicing junctions. 201657 known splicing junctions. 168441 novel splicing junctions.
sampling 20% (63359016) splicing reads. 402537 splicing junctions. 205942 known splicing junctions. 196595 novel splicing junctions.
sampling 25% (79198770) splicing reads. 428302 splicing junctions. 208829 known splicing junctions. 219473 novel splicing junctions.
sampling 30% (95038524) splicing reads. 449125 splicing junctions. 211079 known splicing junctions. 238046 novel splicing junctions.
sampling 35% (110878278) splicing reads. 466811 splicing junctions. 212883 known splicing junctions. 253928 novel splicing junctions.
sampling 40% (126718032) splicing reads. 481513 splicing junctions. 214283 known splicing junctions. 267230 novel splicing junctions.
sampling 45% (142557786) splicing reads. 494168 splicing junctions. 215425 known splicing junctions. 278743 novel splicing junctions.
sampling 50% (158397541) splicing reads. 505139 splicing junctions. 216369 known splicing junctions. 288770 novel splicing junctions.
sampling 55% (174237295) splicing reads. 514531 splicing junctions. 217190 known splicing junctions. 297341 novel splicing junctions.
sampling 60% (190077049) splicing reads. 522643 splicing junctions. 217850 known splicing junctions. 304793 novel splicing junctions.
sampling 65% (205916803) splicing reads. 529651 splicing junctions. 218434 known splicing junctions. 311217 novel splicing junctions.
sampling 70% (221756557) splicing reads. 535683 splicing junctions. 218888 known splicing junctions. 316795 novel splicing junctions.
sampling 75% (237596311) splicing reads. 540837 splicing junctions. 219252 known splicing junctions. 321585 novel splicing junctions.
sampling 80% (253436065) splicing reads. 545085 splicing junctions. 219607 known splicing junctions. 325478 novel splicing junctions.
sampling 85% (269275819) splicing reads. 548539 splicing junctions. 219888 known splicing junctions. 328651 novel splicing junctions.
sampling 90% (285115573) splicing reads. 551387 splicing junctions. 220092 known splicing junctions. 331295 novel splicing junctions.
sampling 95% (300955327) splicing reads. 553560 splicing junctions. 220254 known splicing junctions. 333306 novel splicing junctions.
sampling 100% (316795082) splicing reads. 555156 splicing junctions. 220369 known splicing junctions. 334787 novel splicing junctions.
null device 
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