Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/c41cb2031ecd10a88720084a674601/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/27385695e43288cff28ebcd46dc4c9/659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/c41cb2031ecd10a88720084a674601/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/dfbb32fd89ba107e4305d79a2576c9/659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1