Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/76fa424b963a0e8ab4c4ee35ed2e7e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/0508594000c2359eddbe03f00fbe2d/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/76fa424b963a0e8ab4c4ee35ed2e7e/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 292050056
unpaired = 4902996
MERGED PAIRED END READS = 292050056
MATES PROCESSED = 589003108
TOTAL READS     = 296953052
DISTINCT READS  = 1.29346e+08
DISTINCT COUNTS = 1329
MAX COUNT       = 961942
COUNTS OF 1     = 6.64434e+07
MAX TERMS       = 100
OBSERVED COUNTS (961943)
1	66443362
2	30877381
3	14600756
4	7110047
5	3674338
6	2033127
7	1211719
8	774680
9	521828
10	370401
11	274769
12	208757
13	163913
14	131222
15	107164
16	88473
17	74177
18	62809
19	53972
20	46295
21	40807
22	35584
23	31574
24	28115
25	24861
26	22306
27	20176
28	18094
29	16760
30	15068
31	14008
32	12765
33	11655
34	10767
35	9880
36	9307
37	8581
38	8013
39	7406
40	7015
41	6543
42	5968
43	5785
44	5398
45	5060
46	4893
47	4637
48	4360
49	4010
50	3809
51	3604
52	3361
53	3264
54	3107
55	2954
56	2804
57	2808
58	2537
59	2456
60	2354
61	2244
62	2139
63	2089
64	1954
65	1836
66	1869
67	1816
68	1652
69	1753
70	1591
71	1536
72	1487
73	1378
74	1446
75	1327
76	1306
77	1248
78	1217
79	1126
80	1136
81	1095
82	1021
83	947
84	936
85	963
86	881
87	899
88	882
89	841
90	848
91	790
92	733
93	740
94	770
95	700
96	718
97	664
98	669
99	649
100	638
101	644
102	558
103	598
104	561
105	554
106	577
107	525
108	513
109	487
110	450
111	434
112	473
113	403
114	451
115	448
116	424
117	397
118	407
119	376
120	373
121	358
122	357
123	380
124	346
125	362
126	327
127	294
128	339
129	326
130	317
131	277
132	312
133	297
134	330
135	281
136	257
137	262
138	248
139	243
140	247
141	249
142	224
143	239
144	234
145	228
146	229
147	213
148	244
149	212
150	234
151	221
152	231
153	182
154	200
155	214
156	182
157	187
158	212
159	197
160	172
161	207
162	186
163	183
164	167
165	151
166	178
167	167
168	158
169	143
170	144
171	162
172	139
173	152
174	145
175	144
176	126
177	132
178	142
179	136
180	136
181	131
182	114
183	142
184	119
185	122
186	116
187	94
188	123
189	121
190	140
191	104
192	109
193	108
194	93
195	79
196	116
197	127
198	102
199	90
200	91
201	93
202	113
203	89
204	89
205	75
206	87
207	92
208	68
209	88
210	75
211	84
212	89
213	71
214	91
215	61
216	72
217	73
218	73
219	73
220	76
221	73
222	73
223	72
224	63
225	64
226	57
227	59
228	65
229	60
230	72
231	54
232	58
233	57
234	47
235	63
236	53
237	79
238	61
239	76
240	62
241	60
242	61
243	47
244	42
245	55
246	43
247	37
248	51
249	45
250	58
251	59
252	56
253	61
254	57
255	55
256	47
257	46
258	46
259	36
260	45
261	49
262	42
263	43
264	49
265	47
266	44
267	36
268	43
269	51
270	45
271	46
272	37
273	40
274	54
275	39
276	44
277	32
278	24
279	29
280	34
281	31
282	25
283	45
284	25
285	42
286	42
287	38
288	35
289	35
290	38
291	35
292	40
293	36
294	35
295	32
296	34
297	32
298	30
299	29
300	26
301	28
302	30
303	31
304	28
305	43
306	25
307	35
308	25
309	19
310	35
311	31
312	30
313	28
314	26
315	30
316	28
317	21
318	25
319	27
320	27
321	23
322	20
323	21
324	29
325	28
326	30
327	22
328	17
329	18
330	19
331	24
332	18
333	34
334	19
335	25
336	24
337	23
338	18
339	15
340	20
341	23
342	21
343	22
344	25
345	31
346	20
347	21
348	17
349	19
350	16
351	23
352	15
353	17
354	17
355	32
356	20
357	19
358	13
359	28
360	20
361	22
362	14
363	24
364	17
365	24
366	14
367	16
368	15
369	24
370	14
371	16
372	21
373	24
374	21
375	23
376	16
377	18
378	8
379	9
380	15
381	18
382	19
383	12
384	17
385	15
386	20
387	23
388	15
389	18
390	20
391	13
392	11
393	14
394	16
395	17
396	14
397	14
398	10
399	14
400	13
401	13
402	11
403	9
404	15
405	10
406	16
407	13
408	14
409	16
410	17
411	11
412	11
413	12
414	16
415	12
416	11
417	15
418	10
419	15
420	18
421	6
422	12
423	10
424	13
425	14
426	11
427	14
428	11
429	13
430	19
431	11
432	20
433	14
434	10
435	5
436	10
437	7
438	13
439	13
440	6
441	7
442	10
443	12
444	11
445	14
446	4
447	10
448	15
449	6
450	9
451	8
452	11
453	11
454	11
455	10
456	16
457	13
458	4
459	9
460	6
461	12
462	17
463	6
464	6
465	9
466	6
467	11
468	12
469	13
470	10
471	7
472	8
473	4
474	10
475	1
476	5
477	11
478	5
479	13
480	4
481	9
482	4
483	7
484	6
485	5
486	12
487	8
488	8
489	10
490	5
491	12
492	4
493	5
494	6
495	10
496	14
497	4
498	5
499	6
500	12
501	7
502	8
503	10
504	10
505	9
506	9
507	4
508	6
509	8
510	7
511	6
512	11
513	4
514	8
515	11
516	5
517	6
518	6
519	9
520	8
521	5
522	2
523	9
524	4
525	3
526	8
527	7
528	3
529	1
530	11
531	8
532	4
533	5
534	5
535	5
536	11
537	11
538	9
539	6
540	3
541	3
542	6
543	5
544	7
545	3
546	7
547	7
548	3
549	5
550	8
551	5
552	7
553	2
554	2
555	5
556	5
557	7
558	2
559	8
560	5
561	9
562	3
563	5
564	10
565	11
566	4
567	4
568	4
569	6
570	7
571	10
572	4
573	3
574	6
575	3
576	4
577	3
578	1
579	4
580	5
581	3
582	3
583	3
584	7
585	6
586	1
587	5
588	10
589	7
590	3
591	10
592	4
593	4
594	5
595	10
596	9
597	1
598	1
599	3
600	3
601	5
602	3
603	8
604	5
605	5
606	4
607	1
608	3
609	2
610	8
611	1
612	4
613	5
614	7
615	6
616	5
617	5
618	7
619	3
620	7
621	6
622	8
623	7
624	5
625	5
626	3
627	5
628	3
629	5
630	7
631	6
632	4
633	1
634	2
635	4
636	4
637	3
638	5
639	7
640	5
641	1
642	1
643	3
644	5
645	3
646	1
647	4
648	5
649	3
650	2
651	1
652	9
653	2
654	6
655	4
656	6
657	6
658	6
659	5
660	4
661	3
663	6
664	3
665	4
666	2
667	5
668	1
669	5
670	1
671	2
672	4
673	6
674	4
675	3
676	3
677	9
678	3
679	4
680	2
681	5
682	5
683	1
684	4
685	1
686	2
687	3
688	5
689	4
690	2
691	3
692	2
693	2
694	4
695	2
696	3
697	3
698	1
699	2
700	1
701	2
702	1
703	4
704	2
705	2
706	4
707	6
708	5
709	3
710	3
711	1
712	2
713	6
714	1
715	2
716	4
717	2
718	2
721	4
722	5
723	2
724	3
725	2
726	2
727	2
728	4
729	3
730	3
731	1
732	2
734	4
735	2
736	1
737	4
738	1
740	4
741	2
742	4
743	2
745	2
746	4
748	1
749	2
750	4
751	1
752	2
753	3
754	4
755	2
756	2
758	2
759	2
760	3
761	3
762	1
763	2
764	1
765	1
766	2
767	2
768	1
770	1
771	3
773	1
774	5
775	3
776	1
777	2
778	1
779	2
780	2
781	3
782	2
783	4
784	2
785	1
787	2
788	2
789	1
790	2
792	3
793	1
794	1
795	3
796	1
797	2
798	5
799	2
800	2
802	1
803	1
804	1
806	2
807	4
808	4
809	3
810	3
811	1
812	1
815	2
816	2
817	1
819	2
820	1
821	3
822	2
823	3
824	3
825	3
826	2
827	2
828	1
829	1
830	2
831	5
832	1
833	3
835	3
836	2
837	3
838	4
839	1
840	1
841	4
842	1
843	4
844	1
845	2
846	4
847	1
849	2
850	1
851	1
852	3
861	1
862	4
863	2
864	2
865	3
866	1
867	2
868	1
870	1
871	2
872	2
873	2
874	3
876	2
877	1
878	3
879	1
880	3
881	3
883	1
884	1
885	1
886	2
888	5
889	2
890	1
891	2
892	3
893	5
894	1
895	2
896	4
897	1
900	2
901	1
902	1
904	4
905	1
907	1
908	5
909	2
910	2
913	1
914	2
916	2
920	1
921	1
922	2
923	2
925	1
927	2
928	2
930	1
932	3
933	1
935	2
936	1
937	3
938	2
939	1
940	3
941	1
943	2
944	1
945	1
946	3
949	1
951	3
953	4
955	2
956	1
957	3
959	1
960	4
961	1
962	1
963	1
966	1
967	2
968	1
969	1
970	2
973	1
974	1
975	1
977	1
978	1
979	2
982	3
985	1
986	1
989	4
990	1
993	1
994	1
995	2
996	1
998	1
999	1
1001	1
1002	2
1003	2
1004	1
1005	2
1006	3
1008	2
1012	1
1014	1
1015	2
1016	2
1017	2
1018	2
1022	2
1023	2
1025	1
1027	1
1028	3
1029	1
1031	2
1033	2
1035	2
1037	1
1038	1
1039	1
1040	1
1041	6
1044	1
1046	1
1047	1
1048	1
1049	2
1050	3
1051	1
1053	2
1054	2
1055	1
1057	1
1059	1
1060	1
1061	1
1062	1
1063	1
1064	3
1067	1
1068	2
1069	1
1070	2
1072	1
1073	1
1077	1
1079	4
1080	2
1081	1
1082	2
1084	2
1085	1
1086	1
1088	1
1089	1
1092	1
1094	1
1096	3
1098	1
1099	1
1102	1
1106	1
1109	1
1111	3
1113	1
1114	1
1115	3
1117	1
1118	1
1119	2
1121	1
1122	1
1126	1
1127	1
1128	1
1129	1
1130	1
1131	1
1132	1
1133	1
1135	2
1138	1
1139	1
1140	1
1142	1
1144	3
1148	3
1149	3
1150	2
1151	1
1153	2
1155	1
1156	1
1159	2
1161	1
1162	2
1164	2
1165	1
1168	1
1170	1
1172	1
1173	2
1176	1
1177	1
1178	1
1179	1
1183	1
1185	1
1191	2
1192	1
1194	1
1195	2
1198	2
1201	1
1204	1
1205	1
1206	1
1219	1
1221	1
1223	1
1225	1
1227	1
1228	1
1230	1
1232	1
1234	3
1235	1
1236	1
1237	1
1240	1
1245	2
1248	1
1250	2
1261	1
1262	1
1265	1
1268	2
1269	2
1271	1
1275	1
1282	1
1286	1
1289	1
1295	1
1296	1
1300	1
1305	1
1306	1
1307	1
1310	1
1312	1
1313	1
1321	2
1323	1
1325	2
1326	1
1327	1
1332	1
1333	1
1335	1
1342	1
1343	1
1344	1
1346	1
1348	1
1355	1
1356	2
1360	1
1362	1
1363	1
1365	1
1368	1
1372	1
1379	1
1381	1
1382	1
1388	2
1398	1
1399	1
1400	1
1401	1
1402	1
1405	2
1408	1
1409	1
1410	1
1411	1
1413	1
1417	1
1421	1
1425	3
1426	1
1427	1
1429	1
1430	1
1432	1
1435	1
1437	1
1442	1
1453	1
1461	1
1462	1
1465	1
1466	1
1470	1
1472	1
1473	1
1475	1
1497	1
1498	1
1499	1
1503	2
1504	1
1505	1
1508	1
1513	1
1514	1
1517	2
1518	1
1519	1
1520	2
1524	1
1525	1
1532	1
1534	1
1537	1
1553	2
1557	1
1558	1
1559	1
1565	2
1569	2
1572	1
1584	1
1585	1
1590	2
1596	1
1599	1
1602	1
1606	1
1607	1
1609	1
1611	1
1622	1
1623	1
1624	1
1627	1
1634	1
1638	1
1640	1
1641	1
1644	1
1648	1
1649	2
1654	1
1655	1
1659	1
1661	1
1663	1
1679	1
1680	1
1685	1
1696	1
1698	1
1700	1
1703	1
1718	1
1726	1
1727	1
1730	1
1741	1
1756	1
1763	1
1767	1
1769	1
1774	2
1775	1
1779	2
1782	1
1789	1
1793	1
1797	1
1809	1
1811	1
1812	1
1827	1
1836	1
1837	1
1840	1
1846	1
1856	1
1865	1
1869	1
1893	1
1899	1
1906	1
1910	1
1914	1
1919	2
1940	1
1948	1
1955	1
1959	1
1964	1
1965	1
1982	1
1989	1
1992	1
2003	1
2009	2
2038	1
2041	1
2042	1
2053	1
2079	1
2089	1
2128	1
2140	1
2145	1
2160	1
2204	1
2215	1
2243	1
2255	1
2271	2
2274	1
2276	1
2290	1
2299	1
2331	1
2337	3
2343	1
2377	1
2383	1
2387	1
2397	1
2400	1
2468	1
2486	1
2508	1
2511	1
2531	1
2543	1
2568	1
2592	1
2650	1
2668	1
2718	1
2730	1
2808	1
2847	1
2872	1
2879	1
2898	1
2953	1
2954	1
2996	1
3019	1
3082	1
3091	1
3145	1
3148	1
3254	1
3297	1
3298	1
3356	1
3431	1
3441	1
3494	1
3568	1
3779	1
3847	1
3911	1
3925	1
4062	1
4200	1
4300	1
4647	1
4757	1
5156	1
5276	1
5596	1
5764	1
5815	1
6373	1
6896	1
7008	1
7518	1
11686	1
19239	1
20046	1
961942	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..........._.................................._..._................_....
.................._............._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]