Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 13001
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 13001
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:13001
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AATF--NPLOC4 HAVANA gene 26323 56025 . + . FI_gene_label "NPLOC4^ENSG00000182446.14" ; ID "AATF--NPLOC4^NPLOC4^ENSG00000182446.14" ; ccdsid "CCDS45812.1" ; exon_id "ENSE00002649665.2" ; exon_number 1 ; gene_id "AATF--NPLOC4^NPLOC4^ENSG00000182446.14" ; gene_name NPLOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177990.5" ; havana_transcript "OTTHUMT00000440140.2" ; hgnc_id "HGNC:18261" ; level 2 ; orig_coord_info "chr17,81636916,81636930,-" ; protein_id "ENSP00000331487.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AATF--NPLOC4^ENST00000331134.11" ; transcript_name "NPLOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
AATF--NPLOC4 HAVANA mRNA 26323 56025 . + . FI_gene_label "NPLOC4^ENSG00000182446.14" ; ID "AATF--NPLOC4^ENST00000331134.11" ; Parent "AATF--NPLOC4^NPLOC4^ENSG00000182446.14" ; ccdsid "CCDS45812.1" ; exon_id "ENSE00002649665.2" ; exon_number 1 ; gene_id "AATF--NPLOC4^NPLOC4^ENSG00000182446.14" ; gene_name NPLOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177990.5" ; havana_transcript "OTTHUMT00000440140.2" ; hgnc_id "HGNC:18261" ; level 2 ; orig_coord_info "chr17,81636916,81636930,-" ; protein_id "ENSP00000331487.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AATF--NPLOC4^ENST00000331134.11" ; transcript_name "NPLOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AATF--NPLOC4 HAVANA gene 8238 16146 . + . FI_gene_label "AATF^ENSG00000275700.6" ; ID "AATF--NPLOC4^AATF^ENSG00000275700.6" ; exon_id "ENSE00003729439.1" ; exon_number 1 ; gene_id "AATF--NPLOC4^AATF^ENSG00000275700.6" ; gene_name AATF ; gene_type protein_coding ; havana_gene "OTTHUMG00000188458.3" ; havana_transcript "OTTHUMT00000477301.1" ; hgnc_id "HGNC:19235" ; level 2 ; orig_coord_info "chr17,36988658,36988720,+" ; protein_id "ENSP00000480472.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AATF--NPLOC4^ENST00000610798.4" ; transcript_name "AATF-201" ; transcript_support_level 2 ; transcript_type protein_coding
AATF--NPLOC4 HAVANA mRNA 8238 16146 . + . FI_gene_label "AATF^ENSG00000275700.6" ; ID "AATF--NPLOC4^ENST00000610798.4" ; Parent "AATF--NPLOC4^AATF^ENSG00000275700.6" ; exon_id "ENSE00003729439.1" ; exon_number 1 ; gene_id "AATF--NPLOC4^AATF^ENSG00000275700.6" ; gene_name AATF ; gene_type protein_coding ; havana_gene "OTTHUMG00000188458.3" ; havana_transcript "OTTHUMT00000477301.1" ; hgnc_id "HGNC:19235" ; level 2 ; orig_coord_info "chr17,36988658,36988720,+" ; protein_id "ENSP00000480472.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AATF--NPLOC4^ENST00000610798.4" ; transcript_name "AATF-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ACSF2--SKAP1 HAVANA gene 1061 14951 . + . FI_gene_label "ACSF2^ENSG00000167107.13" ; ID "ACSF2--SKAP1^ACSF2^ENSG00000167107.13" ; ccdsid "CCDS11567.1" ; exon_id "ENSE00003678158.1" ; exon_number 1 ; gene_id "ACSF2--SKAP1^ACSF2^ENSG00000167107.13" ; gene_name ACSF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162128.5" ; havana_transcript "OTTHUMT00000367423.3" ; hgnc_id "HGNC:26101" ; level 2 ; orig_coord_info "chr17,50426262,50426389,+" ; protein_id "ENSP00000300441.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ACSF2--SKAP1^ENST00000300441.9" ; transcript_name "ACSF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACSF2--SKAP1 HAVANA mRNA 1061 14951 . + . FI_gene_label "ACSF2^ENSG00000167107.13" ; ID "ACSF2--SKAP1^ENST00000300441.9" ; Parent "ACSF2--SKAP1^ACSF2^ENSG00000167107.13" ; ccdsid "CCDS11567.1" ; exon_id "ENSE00003678158.1" ; exon_number 1 ; gene_id "ACSF2--SKAP1^ACSF2^ENSG00000167107.13" ; gene_name ACSF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162128.5" ; havana_transcript "OTTHUMT00000367423.3" ; hgnc_id "HGNC:26101" ; level 2 ; orig_coord_info "chr17,50426262,50426389,+" ; protein_id "ENSP00000300441.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ACSF2--SKAP1^ENST00000300441.9" ; transcript_name "ACSF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACSF2--SKAP1 HAVANA gene 18021 34982 . + . FI_gene_label "SKAP1^ENSG00000141293.16" ; ID "ACSF2--SKAP1^SKAP1^ENSG00000141293.16" ; ccdsid "CCDS32674.1" ; exon_id "ENSE00002733332.2" ; exon_number 1 ; gene_id "ACSF2--SKAP1^SKAP1^ENSG00000141293.16" ; gene_name SKAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178823.3" ; havana_transcript "OTTHUMT00000443432.2" ; hgnc_id "HGNC:15605" ; level 2 ; orig_coord_info "chr17,48430075,48430120,-" ; protein_id "ENSP00000338171.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACSF2--SKAP1^ENST00000336915.11" ; transcript_name "SKAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACSF2--SKAP1 HAVANA mRNA 18021 34982 . + . FI_gene_label "SKAP1^ENSG00000141293.16" ; ID "ACSF2--SKAP1^ENST00000336915.11" ; Parent "ACSF2--SKAP1^SKAP1^ENSG00000141293.16" ; ccdsid "CCDS32674.1" ; exon_id "ENSE00002733332.2" ; exon_number 1 ; gene_id "ACSF2--SKAP1^SKAP1^ENSG00000141293.16" ; gene_name SKAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178823.3" ; havana_transcript "OTTHUMT00000443432.2" ; hgnc_id "HGNC:15605" ; level 2 ; orig_coord_info "chr17,48430075,48430120,-" ; protein_id "ENSP00000338171.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACSF2--SKAP1^ENST00000336915.11" ; transcript_name "SKAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AFDN--ARID1B HAVANA gene 55556 105163 . + . FI_gene_label "ARID1B^ENSG00000049618.24" ; ID "AFDN--ARID1B^ARID1B^ENSG00000049618.24" ; exon_id "ENSE00002535311.1" ; exon_number 1 ; gene_id "AFDN--ARID1B^ARID1B^ENSG00000049618.24" ; gene_name ARID1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000015890.14" ; havana_transcript "OTTHUMT00000042830.3" ; hgnc_id "HGNC:18040" ; level 1 ; orig_coord_info "chr6,156901376,156901525,+" ; protein_id "ENSP00000313006.7" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "AFDN--ARID1B^ENST00000319584.11" ; transcript_name "ARID1B-201" ; transcript_support_level 2 ; transcript_type protein_coding
AFDN--ARID1B HAVANA mRNA 55556 105163 . + . FI_gene_label "ARID1B^ENSG00000049618.24" ; ID "AFDN--ARID1B^ENST00000319584.11" ; Parent "AFDN--ARID1B^ARID1B^ENSG00000049618.24" ; exon_id "ENSE00002535311.1" ; exon_number 1 ; gene_id "AFDN--ARID1B^ARID1B^ENSG00000049618.24" ; gene_name ARID1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000015890.14" ; havana_transcript "OTTHUMT00000042830.3" ; hgnc_id "HGNC:18040" ; level 1 ; orig_coord_info "chr6,156901376,156901525,+" ; protein_id "ENSP00000313006.7" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "AFDN--ARID1B^ENST00000319584.11" ; transcript_name "ARID1B-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AFDN--ARID1B HAVANA gene 1040 35941 . + . FI_gene_label "AFDN^ENSG00000130396.20" ; ID "AFDN--ARID1B^AFDN^ENSG00000130396.20" ; exon_id "ENSE00002039523.1" ; exon_number 1 ; gene_id "AFDN--ARID1B^AFDN^ENSG00000130396.20" ; gene_name AFDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000016031.9" ; havana_transcript "OTTHUMT00000043149.2" ; hgnc_id "HGNC:7137" ; level 2 ; orig_coord_info "chr6,167827133,167827237,+" ; protein_id "ENSP00000341118.4" ; tag not_organism_supported basic ; transcript_id "AFDN--ARID1B^ENST00000344191.8" ; transcript_name "AFDN-201" ; transcript_support_level 5 ; transcript_type protein_coding
AFDN--ARID1B HAVANA mRNA 1040 35941 . + . FI_gene_label "AFDN^ENSG00000130396.20" ; ID "AFDN--ARID1B^ENST00000344191.8" ; Parent "AFDN--ARID1B^AFDN^ENSG00000130396.20" ; exon_id "ENSE00002039523.1" ; exon_number 1 ; gene_id "AFDN--ARID1B^AFDN^ENSG00000130396.20" ; gene_name AFDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000016031.9" ; havana_transcript "OTTHUMT00000043149.2" ; hgnc_id "HGNC:7137" ; level 2 ; orig_coord_info "chr6,167827133,167827237,+" ; protein_id "ENSP00000341118.4" ; tag not_organism_supported basic ; transcript_id "AFDN--ARID1B^ENST00000344191.8" ; transcript_name "AFDN-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ASL--CRCP HAVANA gene 1020 10797 . + . FI_gene_label "ASL^ENSG00000126522.17" ; ID "ASL--CRCP^ASL^ENSG00000126522.17" ; ccdsid "CCDS5531.1" ; exon_id "ENSE00003644260.1" ; exon_number 2 ; gene_id "ASL--CRCP^ASL^ENSG00000126522.17" ; gene_name ASL ; gene_type protein_coding ; havana_gene "OTTHUMG00000022876.13" ; havana_transcript "OTTHUMT00000251695.5" ; hgnc_id "HGNC:746" ; level 2 ; orig_coord_info "chr7,66076082,66076093,+" ; protein_id "ENSP00000307188.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ASL--CRCP^ENST00000304874.14" ; transcript_name "ASL-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASL--CRCP HAVANA mRNA 1020 10797 . + . FI_gene_label "ASL^ENSG00000126522.17" ; ID "ASL--CRCP^ENST00000304874.14" ; Parent "ASL--CRCP^ASL^ENSG00000126522.17" ; ccdsid "CCDS5531.1" ; exon_id "ENSE00003644260.1" ; exon_number 2 ; gene_id "ASL--CRCP^ASL^ENSG00000126522.17" ; gene_name ASL ; gene_type protein_coding ; havana_gene "OTTHUMG00000022876.13" ; havana_transcript "OTTHUMT00000251695.5" ; hgnc_id "HGNC:746" ; level 2 ; orig_coord_info "chr7,66076082,66076093,+" ; protein_id "ENSP00000307188.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ASL--CRCP^ENST00000304874.14" ; transcript_name "ASL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASL--CRCP HAVANA gene 15165 23674 . + . FI_gene_label "CRCP^ENSG00000241258.7" ; ID "ASL--CRCP^CRCP^ENSG00000241258.7" ; ccdsid "CCDS47599.1" ; exon_id "ENSE00001955601.1" ; exon_number 1 ; gene_id "ASL--CRCP^CRCP^ENSG00000241258.7" ; gene_name CRCP ; gene_type protein_coding ; havana_gene "OTTHUMG00000129519.4" ; havana_transcript "OTTHUMT00000345085.1" ; hgnc_id "HGNC:17888" ; level 2 ; orig_coord_info "chr7,66114963,66114970,+" ; protein_id "ENSP00000340044.5" ; tag basic CCDS ; transcript_id "ASL--CRCP^ENST00000338592.5" ; transcript_name "CRCP-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASL--CRCP HAVANA mRNA 15165 23674 . + . FI_gene_label "CRCP^ENSG00000241258.7" ; ID "ASL--CRCP^ENST00000338592.5" ; Parent "ASL--CRCP^CRCP^ENSG00000241258.7" ; ccdsid "CCDS47599.1" ; exon_id "ENSE00001955601.1" ; exon_number 1 ; gene_id "ASL--CRCP^CRCP^ENSG00000241258.7" ; gene_name CRCP ; gene_type protein_coding ; havana_gene "OTTHUMG00000129519.4" ; havana_transcript "OTTHUMT00000345085.1" ; hgnc_id "HGNC:17888" ; level 2 ; orig_coord_info "chr7,66114963,66114970,+" ; protein_id "ENSP00000340044.5" ; tag basic CCDS ; transcript_id "ASL--CRCP^ENST00000338592.5" ; transcript_name "CRCP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--SMARCE1 HAVANA gene 60353 78761 . + . FI_gene_label "SMARCE1^ENSG00000073584.20" ; ID "BCAS3--SMARCE1^SMARCE1^ENSG00000073584.20" ; exon_id "ENSE00003490655.1" ; exon_number 2 ; gene_id "BCAS3--SMARCE1^SMARCE1^ENSG00000073584.20" ; gene_name SMARCE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133367.12" ; havana_transcript "OTTHUMT00000257211.5" ; hgnc_id "HGNC:11109" ; level 2 ; orig_coord_info "chr17,40645796,40645802,-" ; protein_id "ENSP00000466608.2" ; tag basic ; transcript_id "BCAS3--SMARCE1^ENST00000264640.9" ; transcript_name "SMARCE1-201" ; transcript_support_level 3 ; transcript_type protein_coding
BCAS3--SMARCE1 HAVANA mRNA 60353 78761 . + . FI_gene_label "SMARCE1^ENSG00000073584.20" ; ID "BCAS3--SMARCE1^ENST00000264640.9" ; Parent "BCAS3--SMARCE1^SMARCE1^ENSG00000073584.20" ; exon_id "ENSE00003490655.1" ; exon_number 2 ; gene_id "BCAS3--SMARCE1^SMARCE1^ENSG00000073584.20" ; gene_name SMARCE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133367.12" ; havana_transcript "OTTHUMT00000257211.5" ; hgnc_id "HGNC:11109" ; level 2 ; orig_coord_info "chr17,40645796,40645802,-" ; protein_id "ENSP00000466608.2" ; tag basic ; transcript_id "BCAS3--SMARCE1^ENST00000264640.9" ; transcript_name "SMARCE1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--SMARCE1 HAVANA gene 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--SMARCE1^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--SMARCE1^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--SMARCE1^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS3--SMARCE1 HAVANA mRNA 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--SMARCE1^ENST00000390652.9" ; Parent "BCAS3--SMARCE1^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--SMARCE1^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--SMARCE1^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CDK12--UTP18 HAVANA gene 35686 51790 . + . FI_gene_label "UTP18^ENSG00000011260.14" ; ID "CDK12--UTP18^UTP18^ENSG00000011260.14" ; ccdsid "CCDS42362.1" ; exon_id "ENSE00000820106.10" ; exon_number 1 ; gene_id "CDK12--UTP18^UTP18^ENSG00000011260.14" ; gene_name UTP18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162370.5" ; havana_transcript "OTTHUMT00000368654.2" ; hgnc_id "HGNC:24274" ; level 2 ; orig_coord_info "chr17,51260585,51260926,+" ; protein_id "ENSP00000225298.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CDK12--UTP18^ENST00000225298.12" ; transcript_name "UTP18-201" ; transcript_support_level 1 ; transcript_type protein_coding
CDK12--UTP18 HAVANA mRNA 35686 51790 . + . FI_gene_label "UTP18^ENSG00000011260.14" ; ID "CDK12--UTP18^ENST00000225298.12" ; Parent "CDK12--UTP18^UTP18^ENSG00000011260.14" ; ccdsid "CCDS42362.1" ; exon_id "ENSE00000820106.10" ; exon_number 1 ; gene_id "CDK12--UTP18^UTP18^ENSG00000011260.14" ; gene_name UTP18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162370.5" ; havana_transcript "OTTHUMT00000368654.2" ; hgnc_id "HGNC:24274" ; level 2 ; orig_coord_info "chr17,51260585,51260926,+" ; protein_id "ENSP00000225298.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CDK12--UTP18^ENST00000225298.12" ; transcript_name "UTP18-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CDK12--UTP18 HAVANA gene 1276 20920 . + . FI_gene_label "CDK12^ENSG00000167258.15" ; ID "CDK12--UTP18^CDK12^ENSG00000167258.15" ; ccdsid "CCDS45666.1" ; exon_id "ENSE00001842796.1" ; exon_number 1 ; gene_id "CDK12--UTP18^CDK12^ENSG00000167258.15" ; gene_name CDK12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133214.9" ; havana_transcript "OTTHUMT00000444158.1" ; hgnc_id "HGNC:24224" ; level 2 ; orig_coord_info "chr17,39462072,39463117,+" ; protein_id "ENSP00000407720.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "CDK12--UTP18^ENST00000430627.6" ; transcript_name "CDK12-201" ; transcript_support_level 1 ; transcript_type protein_coding
CDK12--UTP18 HAVANA mRNA 1276 20920 . + . FI_gene_label "CDK12^ENSG00000167258.15" ; ID "CDK12--UTP18^ENST00000430627.6" ; Parent "CDK12--UTP18^CDK12^ENSG00000167258.15" ; ccdsid "CCDS45666.1" ; exon_id "ENSE00001842796.1" ; exon_number 1 ; gene_id "CDK12--UTP18^CDK12^ENSG00000167258.15" ; gene_name CDK12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133214.9" ; havana_transcript "OTTHUMT00000444158.1" ; hgnc_id "HGNC:24224" ; level 2 ; orig_coord_info "chr17,39462072,39463117,+" ; protein_id "ENSP00000407720.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "CDK12--UTP18^ENST00000430627.6" ; transcript_name "CDK12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDX10--AP003049.2 HAVANA gene 1001 33073 . + . FI_gene_label "DDX10^ENSG00000178105.11" ; ID "DDX10--AP003049.2^DDX10^ENSG00000178105.11" ; ccdsid "CCDS8342.1" ; exon_id "ENSE00003837372.1" ; exon_number 1 ; gene_id "DDX10--AP003049.2^DDX10^ENSG00000178105.11" ; gene_name DDX10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166540.4" ; havana_transcript "OTTHUMT00000390343.2" ; hgnc_id "HGNC:2735" ; level 2 ; orig_coord_info "chr11,108665154,108665339,+" ; protein_id "ENSP00000314348.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "DDX10--AP003049.2^ENST00000322536.8" ; transcript_name "DDX10-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDX10--AP003049.2 HAVANA mRNA 1001 33073 . + . FI_gene_label "DDX10^ENSG00000178105.11" ; ID "DDX10--AP003049.2^ENST00000322536.8" ; Parent "DDX10--AP003049.2^DDX10^ENSG00000178105.11" ; ccdsid "CCDS8342.1" ; exon_id "ENSE00003837372.1" ; exon_number 1 ; gene_id "DDX10--AP003049.2^DDX10^ENSG00000178105.11" ; gene_name DDX10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166540.4" ; havana_transcript "OTTHUMT00000390343.2" ; hgnc_id "HGNC:2735" ; level 2 ; orig_coord_info "chr11,108665154,108665339,+" ; protein_id "ENSP00000314348.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "DDX10--AP003049.2^ENST00000322536.8" ; transcript_name "DDX10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDX10--SNORD39 HAVANA gene 1001 33073 . + . FI_gene_label "DDX10^ENSG00000178105.11" ; ID "DDX10--SNORD39^DDX10^ENSG00000178105.11" ; ccdsid "CCDS8342.1" ; exon_id "ENSE00003837372.1" ; exon_number 1 ; gene_id "DDX10--SNORD39^DDX10^ENSG00000178105.11" ; gene_name DDX10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166540.4" ; havana_transcript "OTTHUMT00000390343.2" ; hgnc_id "HGNC:2735" ; level 2 ; orig_coord_info "chr11,108665154,108665339,+" ; protein_id "ENSP00000314348.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "DDX10--SNORD39^ENST00000322536.8" ; transcript_name "DDX10-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDX10--SNORD39 HAVANA mRNA 1001 33073 . + . FI_gene_label "DDX10^ENSG00000178105.11" ; ID "DDX10--SNORD39^ENST00000322536.8" ; Parent "DDX10--SNORD39^DDX10^ENSG00000178105.11" ; ccdsid "CCDS8342.1" ; exon_id "ENSE00003837372.1" ; exon_number 1 ; gene_id "DDX10--SNORD39^DDX10^ENSG00000178105.11" ; gene_name DDX10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166540.4" ; havana_transcript "OTTHUMT00000390343.2" ; hgnc_id "HGNC:2735" ; level 2 ; orig_coord_info "chr11,108665154,108665339,+" ; protein_id "ENSP00000314348.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "DDX10--SNORD39^ENST00000322536.8" ; transcript_name "DDX10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EIF4ENIF1--ISX HAVANA gene 28094 34431 . + . FI_gene_label "ISX^ENSG00000175329.13" ; ID "EIF4ENIF1--ISX^ISX^ENSG00000175329.13" ; ccdsid "CCDS33640.1" ; exon_id "ENSE00001186948.4" ; exon_number 1 ; gene_id "EIF4ENIF1--ISX^ISX^ENSG00000175329.13" ; gene_name ISX ; gene_type protein_coding ; havana_gene "OTTHUMG00000150962.3" ; havana_transcript "OTTHUMT00000320662.1" ; hgnc_id "HGNC:28084" ; level 2 ; orig_coord_info "chr22,35067088,35067316,+" ; protein_id "ENSP00000311492.6" ; tag basic appris_principal_1 CCDS ; transcript_id "EIF4ENIF1--ISX^ENST00000308700.6" ; transcript_name "ISX-201" ; transcript_support_level 1 ; transcript_type protein_coding
EIF4ENIF1--ISX HAVANA mRNA 28094 34431 . + . FI_gene_label "ISX^ENSG00000175329.13" ; ID "EIF4ENIF1--ISX^ENST00000308700.6" ; Parent "EIF4ENIF1--ISX^ISX^ENSG00000175329.13" ; ccdsid "CCDS33640.1" ; exon_id "ENSE00001186948.4" ; exon_number 1 ; gene_id "EIF4ENIF1--ISX^ISX^ENSG00000175329.13" ; gene_name ISX ; gene_type protein_coding ; havana_gene "OTTHUMG00000150962.3" ; havana_transcript "OTTHUMT00000320662.1" ; hgnc_id "HGNC:28084" ; level 2 ; orig_coord_info "chr22,35067088,35067316,+" ; protein_id "ENSP00000311492.6" ; tag basic appris_principal_1 CCDS ; transcript_id "EIF4ENIF1--ISX^ENST00000308700.6" ; transcript_name "ISX-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EIF4ENIF1--ISX HAVANA gene 2252 23243 . + . FI_gene_label "EIF4ENIF1^ENSG00000184708.18" ; ID "EIF4ENIF1--ISX^EIF4ENIF1^ENSG00000184708.18" ; ccdsid "CCDS13898.1" ; exon_id "ENSE00001320157.1" ; exon_number 2 ; gene_id "EIF4ENIF1--ISX^EIF4ENIF1^ENSG00000184708.18" ; gene_name EIF4ENIF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030793.13" ; havana_transcript "OTTHUMT00000075681.5" ; hgnc_id "HGNC:16687" ; level 2 ; orig_coord_info "chr22,31488623,31488718,-" ; protein_id "ENSP00000328103.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EIF4ENIF1--ISX^ENST00000330125.10" ; transcript_name "EIF4ENIF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EIF4ENIF1--ISX HAVANA mRNA 2252 23243 . + . FI_gene_label "EIF4ENIF1^ENSG00000184708.18" ; ID "EIF4ENIF1--ISX^ENST00000330125.10" ; Parent "EIF4ENIF1--ISX^EIF4ENIF1^ENSG00000184708.18" ; ccdsid "CCDS13898.1" ; exon_id "ENSE00001320157.1" ; exon_number 2 ; gene_id "EIF4ENIF1--ISX^EIF4ENIF1^ENSG00000184708.18" ; gene_name EIF4ENIF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030793.13" ; havana_transcript "OTTHUMT00000075681.5" ; hgnc_id "HGNC:16687" ; level 2 ; orig_coord_info "chr22,31488623,31488718,-" ; protein_id "ENSP00000328103.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EIF4ENIF1--ISX^ENST00000330125.10" ; transcript_name "EIF4ENIF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EIF4ENIF1--LINC01399 HAVANA gene 2252 23243 . + . FI_gene_label "EIF4ENIF1^ENSG00000184708.18" ; ID "EIF4ENIF1--LINC01399^EIF4ENIF1^ENSG00000184708.18" ; ccdsid "CCDS13898.1" ; exon_id "ENSE00001320157.1" ; exon_number 2 ; gene_id "EIF4ENIF1--LINC01399^EIF4ENIF1^ENSG00000184708.18" ; gene_name EIF4ENIF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030793.13" ; havana_transcript "OTTHUMT00000075681.5" ; hgnc_id "HGNC:16687" ; level 2 ; orig_coord_info "chr22,31488623,31488718,-" ; protein_id "ENSP00000328103.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EIF4ENIF1--LINC01399^ENST00000330125.10" ; transcript_name "EIF4ENIF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EIF4ENIF1--LINC01399 HAVANA mRNA 2252 23243 . + . FI_gene_label "EIF4ENIF1^ENSG00000184708.18" ; ID "EIF4ENIF1--LINC01399^ENST00000330125.10" ; Parent "EIF4ENIF1--LINC01399^EIF4ENIF1^ENSG00000184708.18" ; ccdsid "CCDS13898.1" ; exon_id "ENSE00001320157.1" ; exon_number 2 ; gene_id "EIF4ENIF1--LINC01399^EIF4ENIF1^ENSG00000184708.18" ; gene_name EIF4ENIF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030793.13" ; havana_transcript "OTTHUMT00000075681.5" ; hgnc_id "HGNC:16687" ; level 2 ; orig_coord_info "chr22,31488623,31488718,-" ; protein_id "ENSP00000328103.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EIF4ENIF1--LINC01399^ENST00000330125.10" ; transcript_name "EIF4ENIF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GNA13--AC061992.2 HAVANA gene 1001 10967 . + . FI_gene_label "GNA13^ENSG00000120063.10" ; ID "GNA13--AC061992.2^GNA13^ENSG00000120063.10" ; ccdsid "CCDS11661.1" ; exon_id "ENSE00001229026.4" ; exon_number 1 ; gene_id "GNA13--AC061992.2^GNA13^ENSG00000120063.10" ; gene_name GNA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179316.2" ; havana_transcript "OTTHUMT00000445720.2" ; hgnc_id "HGNC:4381" ; level 2 ; orig_coord_info "chr17,65056311,65056593,-" ; protein_id "ENSP00000400717.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNA13--AC061992.2^ENST00000439174.7" ; transcript_name "GNA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
GNA13--AC061992.2 HAVANA mRNA 1001 10967 . + . FI_gene_label "GNA13^ENSG00000120063.10" ; ID "GNA13--AC061992.2^ENST00000439174.7" ; Parent "GNA13--AC061992.2^GNA13^ENSG00000120063.10" ; ccdsid "CCDS11661.1" ; exon_id "ENSE00001229026.4" ; exon_number 1 ; gene_id "GNA13--AC061992.2^GNA13^ENSG00000120063.10" ; gene_name GNA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179316.2" ; havana_transcript "OTTHUMT00000445720.2" ; hgnc_id "HGNC:4381" ; level 2 ; orig_coord_info "chr17,65056311,65056593,-" ; protein_id "ENSP00000400717.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNA13--AC061992.2^ENST00000439174.7" ; transcript_name "GNA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HOXB3--KAT7 HAVANA gene 20654 46208 . + . FI_gene_label "KAT7^ENSG00000136504.13" ; ID "HOXB3--KAT7^KAT7^ENSG00000136504.13" ; ccdsid "CCDS11554.1" ; exon_id "ENSE00002018965.1" ; exon_number 1 ; gene_id "HOXB3--KAT7^KAT7^ENSG00000136504.13" ; gene_name KAT7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161770.7" ; havana_transcript "OTTHUMT00000366032.3" ; hgnc_id "HGNC:17016" ; level 2 ; orig_coord_info "chr17,49788835,49788849,+" ; protein_id "ENSP00000259021.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HOXB3--KAT7^ENST00000259021.9" ; transcript_name "KAT7-201" ; transcript_support_level 1 ; transcript_type protein_coding
HOXB3--KAT7 HAVANA mRNA 20654 46208 . + . FI_gene_label "KAT7^ENSG00000136504.13" ; ID "HOXB3--KAT7^ENST00000259021.9" ; Parent "HOXB3--KAT7^KAT7^ENSG00000136504.13" ; ccdsid "CCDS11554.1" ; exon_id "ENSE00002018965.1" ; exon_number 1 ; gene_id "HOXB3--KAT7^KAT7^ENSG00000136504.13" ; gene_name KAT7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161770.7" ; havana_transcript "OTTHUMT00000366032.3" ; hgnc_id "HGNC:17016" ; level 2 ; orig_coord_info "chr17,49788835,49788849,+" ; protein_id "ENSP00000259021.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HOXB3--KAT7^ENST00000259021.9" ; transcript_name "KAT7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HOXB3--KAT7 HAVANA gene 7896 16605 . + . FI_gene_label "HOXB3^ENSG00000120093.12" ; ID "HOXB3--KAT7^HOXB3^ENSG00000120093.12" ; ccdsid "CCDS11528.1" ; exon_id "ENSE00001308078.1" ; exon_number 3 ; gene_id "HOXB3--KAT7^HOXB3^ENSG00000120093.12" ; gene_name HOXB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159922.4" ; havana_transcript "OTTHUMT00000358267.1" ; hgnc_id "HGNC:5114" ; level 2 ; orig_coord_info "chr17,48552027,48552474,-" ; protein_id "ENSP00000308252.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "HOXB3--KAT7^ENST00000311626.8" ; transcript_name "HOXB3-201" ; transcript_support_level 1 ; transcript_type protein_coding
HOXB3--KAT7 HAVANA mRNA 7896 16605 . + . FI_gene_label "HOXB3^ENSG00000120093.12" ; ID "HOXB3--KAT7^ENST00000311626.8" ; Parent "HOXB3--KAT7^HOXB3^ENSG00000120093.12" ; ccdsid "CCDS11528.1" ; exon_id "ENSE00001308078.1" ; exon_number 3 ; gene_id "HOXB3--KAT7^HOXB3^ENSG00000120093.12" ; gene_name HOXB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159922.4" ; havana_transcript "OTTHUMT00000358267.1" ; hgnc_id "HGNC:5114" ; level 2 ; orig_coord_info "chr17,48552027,48552474,-" ; protein_id "ENSP00000308252.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "HOXB3--KAT7^ENST00000311626.8" ; transcript_name "HOXB3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KAT7--AC090615.1 HAVANA gene 1034 26588 . + . FI_gene_label "KAT7^ENSG00000136504.13" ; ID "KAT7--AC090615.1^KAT7^ENSG00000136504.13" ; ccdsid "CCDS11554.1" ; exon_id "ENSE00002018965.1" ; exon_number 1 ; gene_id "KAT7--AC090615.1^KAT7^ENSG00000136504.13" ; gene_name KAT7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161770.7" ; havana_transcript "OTTHUMT00000366032.3" ; hgnc_id "HGNC:17016" ; level 2 ; orig_coord_info "chr17,49788835,49788849,+" ; protein_id "ENSP00000259021.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KAT7--AC090615.1^ENST00000259021.9" ; transcript_name "KAT7-201" ; transcript_support_level 1 ; transcript_type protein_coding
KAT7--AC090615.1 HAVANA mRNA 1034 26588 . + . FI_gene_label "KAT7^ENSG00000136504.13" ; ID "KAT7--AC090615.1^ENST00000259021.9" ; Parent "KAT7--AC090615.1^KAT7^ENSG00000136504.13" ; ccdsid "CCDS11554.1" ; exon_id "ENSE00002018965.1" ; exon_number 1 ; gene_id "KAT7--AC090615.1^KAT7^ENSG00000136504.13" ; gene_name KAT7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161770.7" ; havana_transcript "OTTHUMT00000366032.3" ; hgnc_id "HGNC:17016" ; level 2 ; orig_coord_info "chr17,49788835,49788849,+" ; protein_id "ENSP00000259021.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KAT7--AC090615.1^ENST00000259021.9" ; transcript_name "KAT7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KAT7--TBC1D3P5 HAVANA gene 1034 26588 . + . FI_gene_label "KAT7^ENSG00000136504.13" ; ID "KAT7--TBC1D3P5^KAT7^ENSG00000136504.13" ; ccdsid "CCDS11554.1" ; exon_id "ENSE00002018965.1" ; exon_number 1 ; gene_id "KAT7--TBC1D3P5^KAT7^ENSG00000136504.13" ; gene_name KAT7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161770.7" ; havana_transcript "OTTHUMT00000366032.3" ; hgnc_id "HGNC:17016" ; level 2 ; orig_coord_info "chr17,49788835,49788849,+" ; protein_id "ENSP00000259021.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KAT7--TBC1D3P5^ENST00000259021.9" ; transcript_name "KAT7-201" ; transcript_support_level 1 ; transcript_type protein_coding
KAT7--TBC1D3P5 HAVANA mRNA 1034 26588 . + . FI_gene_label "KAT7^ENSG00000136504.13" ; ID "KAT7--TBC1D3P5^ENST00000259021.9" ; Parent "KAT7--TBC1D3P5^KAT7^ENSG00000136504.13" ; ccdsid "CCDS11554.1" ; exon_id "ENSE00002018965.1" ; exon_number 1 ; gene_id "KAT7--TBC1D3P5^KAT7^ENSG00000136504.13" ; gene_name KAT7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161770.7" ; havana_transcript "OTTHUMT00000366032.3" ; hgnc_id "HGNC:17016" ; level 2 ; orig_coord_info "chr17,49788835,49788849,+" ; protein_id "ENSP00000259021.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KAT7--TBC1D3P5^ENST00000259021.9" ; transcript_name "KAT7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KHDC4--AC246785.3 HAVANA gene 1041 9902 . + . FI_gene_label "KHDC4^ENSG00000132680.11" ; ID "KHDC4--AC246785.3^KHDC4^ENSG00000132680.11" ; exon_id "ENSE00001931602.1" ; exon_number 1 ; gene_id "KHDC4--AC246785.3^KHDC4^ENSG00000132680.11" ; gene_name KHDC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014103.3" ; havana_transcript "OTTHUMT00000039584.2" ; hgnc_id "HGNC:29145" ; level 2 ; orig_coord_info "chr1,155934336,155934373,-" ; protein_id "ENSP00000357302.3" ; tag basic appris_alternative_2 ; transcript_id "KHDC4--AC246785.3^ENST00000368319.3" ; transcript_name "KHDC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KHDC4--AC246785.3 HAVANA mRNA 1041 9902 . + . FI_gene_label "KHDC4^ENSG00000132680.11" ; ID "KHDC4--AC246785.3^ENST00000368319.3" ; Parent "KHDC4--AC246785.3^KHDC4^ENSG00000132680.11" ; exon_id "ENSE00001931602.1" ; exon_number 1 ; gene_id "KHDC4--AC246785.3^KHDC4^ENSG00000132680.11" ; gene_name KHDC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014103.3" ; havana_transcript "OTTHUMT00000039584.2" ; hgnc_id "HGNC:29145" ; level 2 ; orig_coord_info "chr1,155934336,155934373,-" ; protein_id "ENSP00000357302.3" ; tag basic appris_alternative_2 ; transcript_id "KHDC4--AC246785.3^ENST00000368319.3" ; transcript_name "KHDC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KHDC4--AC253572.1 HAVANA gene 1041 9902 . + . FI_gene_label "KHDC4^ENSG00000132680.11" ; ID "KHDC4--AC253572.1^KHDC4^ENSG00000132680.11" ; exon_id "ENSE00001931602.1" ; exon_number 1 ; gene_id "KHDC4--AC253572.1^KHDC4^ENSG00000132680.11" ; gene_name KHDC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014103.3" ; havana_transcript "OTTHUMT00000039584.2" ; hgnc_id "HGNC:29145" ; level 2 ; orig_coord_info "chr1,155934336,155934373,-" ; protein_id "ENSP00000357302.3" ; tag basic appris_alternative_2 ; transcript_id "KHDC4--AC253572.1^ENST00000368319.3" ; transcript_name "KHDC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KHDC4--AC253572.1 HAVANA mRNA 1041 9902 . + . FI_gene_label "KHDC4^ENSG00000132680.11" ; ID "KHDC4--AC253572.1^ENST00000368319.3" ; Parent "KHDC4--AC253572.1^KHDC4^ENSG00000132680.11" ; exon_id "ENSE00001931602.1" ; exon_number 1 ; gene_id "KHDC4--AC253572.1^KHDC4^ENSG00000132680.11" ; gene_name KHDC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014103.3" ; havana_transcript "OTTHUMT00000039584.2" ; hgnc_id "HGNC:29145" ; level 2 ; orig_coord_info "chr1,155934336,155934373,-" ; protein_id "ENSP00000357302.3" ; tag basic appris_alternative_2 ; transcript_id "KHDC4--AC253572.1^ENST00000368319.3" ; transcript_name "KHDC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KHDC4--NBPF26 HAVANA gene 1041 9902 . + . FI_gene_label "KHDC4^ENSG00000132680.11" ; ID "KHDC4--NBPF26^KHDC4^ENSG00000132680.11" ; exon_id "ENSE00001931602.1" ; exon_number 1 ; gene_id "KHDC4--NBPF26^KHDC4^ENSG00000132680.11" ; gene_name KHDC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014103.3" ; havana_transcript "OTTHUMT00000039584.2" ; hgnc_id "HGNC:29145" ; level 2 ; orig_coord_info "chr1,155934336,155934373,-" ; protein_id "ENSP00000357302.3" ; tag basic appris_alternative_2 ; transcript_id "KHDC4--NBPF26^ENST00000368319.3" ; transcript_name "KHDC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KHDC4--NBPF26 HAVANA mRNA 1041 9902 . + . FI_gene_label "KHDC4^ENSG00000132680.11" ; ID "KHDC4--NBPF26^ENST00000368319.3" ; Parent "KHDC4--NBPF26^KHDC4^ENSG00000132680.11" ; exon_id "ENSE00001931602.1" ; exon_number 1 ; gene_id "KHDC4--NBPF26^KHDC4^ENSG00000132680.11" ; gene_name KHDC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014103.3" ; havana_transcript "OTTHUMT00000039584.2" ; hgnc_id "HGNC:29145" ; level 2 ; orig_coord_info "chr1,155934336,155934373,-" ; protein_id "ENSP00000357302.3" ; tag basic appris_alternative_2 ; transcript_id "KHDC4--NBPF26^ENST00000368319.3" ; transcript_name "KHDC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KHDC4--NBPF26 ENSEMBL gene 31674 51383 . + . FI_gene_label "NBPF26^ENSG00000273136.7" ; ID "KHDC4--NBPF26^NBPF26^ENSG00000273136.7" ; exon_id "ENSE00003704603.1" ; exon_number 1 ; gene_id "KHDC4--NBPF26^NBPF26^ENSG00000273136.7" ; gene_name NBPF26 ; gene_type protein_coding ; havana_gene "OTTHUMG00000189374.4" ; hgnc_id "HGNC:49571" ; level 3 ; orig_coord_info "chr1,120813923,120813993,+" ; protein_id "ENSP00000476257.1" ; tag basic ; transcript_id "KHDC4--NBPF26^ENST00000609741.2" ; transcript_name "NBPF26-201" ; transcript_support_level 5 ; transcript_type protein_coding
KHDC4--NBPF26 ENSEMBL mRNA 31674 51383 . + . FI_gene_label "NBPF26^ENSG00000273136.7" ; ID "KHDC4--NBPF26^ENST00000609741.2" ; Parent "KHDC4--NBPF26^NBPF26^ENSG00000273136.7" ; exon_id "ENSE00003704603.1" ; exon_number 1 ; gene_id "KHDC4--NBPF26^NBPF26^ENSG00000273136.7" ; gene_name NBPF26 ; gene_type protein_coding ; havana_gene "OTTHUMG00000189374.4" ; hgnc_id "HGNC:49571" ; level 3 ; orig_coord_info "chr1,120813923,120813993,+" ; protein_id "ENSP00000476257.1" ; tag basic ; transcript_id "KHDC4--NBPF26^ENST00000609741.2" ; transcript_name "NBPF26-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
LINC02594--SPAG9 HAVANA gene 7307 49819 . + . FI_gene_label "SPAG9^ENSG00000008294.21" ; ID "LINC02594--SPAG9^SPAG9^ENSG00000008294.21" ; ccdsid "CCDS45740.1" ; exon_id "ENSE00003850676.1" ; exon_number 1 ; gene_id "LINC02594--SPAG9^SPAG9^ENSG00000008294.21" ; gene_name SPAG9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162316.7" ; havana_transcript "OTTHUMT00000368543.3" ; hgnc_id "HGNC:14524" ; level 2 ; orig_coord_info "chr17,51120354,51120656,-" ; protein_id "ENSP00000262013.7" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "LINC02594--SPAG9^ENST00000262013.12" ; transcript_name "SPAG9-201" ; transcript_support_level 1 ; transcript_type protein_coding
LINC02594--SPAG9 HAVANA mRNA 7307 49819 . + . FI_gene_label "SPAG9^ENSG00000008294.21" ; ID "LINC02594--SPAG9^ENST00000262013.12" ; Parent "LINC02594--SPAG9^SPAG9^ENSG00000008294.21" ; ccdsid "CCDS45740.1" ; exon_id "ENSE00003850676.1" ; exon_number 1 ; gene_id "LINC02594--SPAG9^SPAG9^ENSG00000008294.21" ; gene_name SPAG9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162316.7" ; havana_transcript "OTTHUMT00000368543.3" ; hgnc_id "HGNC:14524" ; level 2 ; orig_coord_info "chr17,51120354,51120656,-" ; protein_id "ENSP00000262013.7" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "LINC02594--SPAG9^ENST00000262013.12" ; transcript_name "SPAG9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP3K5--MAP7 HAVANA gene 37519 58763 . + . FI_gene_label "MAP7^ENSG00000135525.18" ; ID "MAP3K5--MAP7^MAP7^ENSG00000135525.18" ; ccdsid "CCDS5178.1" ; exon_id "ENSE00001816116.2" ; exon_number 1 ; gene_id "MAP3K5--MAP7^MAP7^ENSG00000135525.18" ; gene_name MAP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015646.3" ; havana_transcript "OTTHUMT00000042382.2" ; hgnc_id "HGNC:6869" ; level 2 ; orig_coord_info "chr6,136550342,136550408,-" ; protein_id "ENSP00000346581.2" ; tag basic appris_principal_4 CCDS ; transcript_id "MAP3K5--MAP7^ENST00000354570.7" ; transcript_name "MAP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAP3K5--MAP7 HAVANA mRNA 37519 58763 . + . FI_gene_label "MAP7^ENSG00000135525.18" ; ID "MAP3K5--MAP7^ENST00000354570.7" ; Parent "MAP3K5--MAP7^MAP7^ENSG00000135525.18" ; ccdsid "CCDS5178.1" ; exon_id "ENSE00001816116.2" ; exon_number 1 ; gene_id "MAP3K5--MAP7^MAP7^ENSG00000135525.18" ; gene_name MAP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015646.3" ; havana_transcript "OTTHUMT00000042382.2" ; hgnc_id "HGNC:6869" ; level 2 ; orig_coord_info "chr6,136550342,136550408,-" ; protein_id "ENSP00000346581.2" ; tag basic appris_principal_4 CCDS ; transcript_id "MAP3K5--MAP7^ENST00000354570.7" ; transcript_name "MAP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP3K5--MAP7 HAVANA gene 1001 34518 . + . FI_gene_label "MAP3K5^ENSG00000197442.10" ; ID "MAP3K5--MAP7^MAP3K5^ENSG00000197442.10" ; ccdsid "CCDS5179.1" ; exon_id "ENSE00001169933.4" ; exon_number 1 ; gene_id "MAP3K5--MAP7^MAP3K5^ENSG00000197442.10" ; gene_name MAP3K5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015647.2" ; havana_transcript "OTTHUMT00000042383.2" ; hgnc_id "HGNC:6857" ; level 2 ; orig_coord_info "chr6,136791710,136792157,-" ; protein_id "ENSP00000351908.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP3K5--MAP7^ENST00000359015.5" ; transcript_name "MAP3K5-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAP3K5--MAP7 HAVANA mRNA 1001 34518 . + . FI_gene_label "MAP3K5^ENSG00000197442.10" ; ID "MAP3K5--MAP7^ENST00000359015.5" ; Parent "MAP3K5--MAP7^MAP3K5^ENSG00000197442.10" ; ccdsid "CCDS5179.1" ; exon_id "ENSE00001169933.4" ; exon_number 1 ; gene_id "MAP3K5--MAP7^MAP3K5^ENSG00000197442.10" ; gene_name MAP3K5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015647.2" ; havana_transcript "OTTHUMT00000042383.2" ; hgnc_id "HGNC:6857" ; level 2 ; orig_coord_info "chr6,136791710,136792157,-" ; protein_id "ENSP00000351908.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP3K5--MAP7^ENST00000359015.5" ; transcript_name "MAP3K5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP3K7--AC090017.1 HAVANA gene 7919 20498 . + . FI_gene_label "MAP3K7^ENSG00000135341.18" ; ID "MAP3K7--AC090017.1^MAP3K7^ENSG00000135341.18" ; exon_id "ENSE00003489617.1" ; exon_number 3 ; gene_id "MAP3K7--AC090017.1^MAP3K7^ENSG00000135341.18" ; gene_name MAP3K7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015217.2" ; havana_transcript "OTTHUMT00000041534.1" ; hgnc_id "HGNC:6859" ; level 2 ; orig_coord_info "chr6,90548047,90548169,-" ; protein_id "ENSP00000358326.1" ; tag basic ; transcript_id "MAP3K7--AC090017.1^ENST00000369320.1" ; transcript_name "MAP3K7-201" ; transcript_support_level 5 ; transcript_type protein_coding
MAP3K7--AC090017.1 HAVANA mRNA 7919 20498 . + . FI_gene_label "MAP3K7^ENSG00000135341.18" ; ID "MAP3K7--AC090017.1^ENST00000369320.1" ; Parent "MAP3K7--AC090017.1^MAP3K7^ENSG00000135341.18" ; exon_id "ENSE00003489617.1" ; exon_number 3 ; gene_id "MAP3K7--AC090017.1^MAP3K7^ENSG00000135341.18" ; gene_name MAP3K7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015217.2" ; havana_transcript "OTTHUMT00000041534.1" ; hgnc_id "HGNC:6859" ; level 2 ; orig_coord_info "chr6,90548047,90548169,-" ; protein_id "ENSP00000358326.1" ; tag basic ; transcript_id "MAP3K7--AC090017.1^ENST00000369320.1" ; transcript_name "MAP3K7-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MAP3K7--AC090022.2 HAVANA gene 7919 20498 . + . FI_gene_label "MAP3K7^ENSG00000135341.18" ; ID "MAP3K7--AC090022.2^MAP3K7^ENSG00000135341.18" ; exon_id "ENSE00003489617.1" ; exon_number 3 ; gene_id "MAP3K7--AC090022.2^MAP3K7^ENSG00000135341.18" ; gene_name MAP3K7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015217.2" ; havana_transcript "OTTHUMT00000041534.1" ; hgnc_id "HGNC:6859" ; level 2 ; orig_coord_info "chr6,90548047,90548169,-" ; protein_id "ENSP00000358326.1" ; tag basic ; transcript_id "MAP3K7--AC090022.2^ENST00000369320.1" ; transcript_name "MAP3K7-201" ; transcript_support_level 5 ; transcript_type protein_coding
MAP3K7--AC090022.2 HAVANA mRNA 7919 20498 . + . FI_gene_label "MAP3K7^ENSG00000135341.18" ; ID "MAP3K7--AC090022.2^ENST00000369320.1" ; Parent "MAP3K7--AC090022.2^MAP3K7^ENSG00000135341.18" ; exon_id "ENSE00003489617.1" ; exon_number 3 ; gene_id "MAP3K7--AC090022.2^MAP3K7^ENSG00000135341.18" ; gene_name MAP3K7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015217.2" ; havana_transcript "OTTHUMT00000041534.1" ; hgnc_id "HGNC:6859" ; level 2 ; orig_coord_info "chr6,90548047,90548169,-" ; protein_id "ENSP00000358326.1" ; tag basic ; transcript_id "MAP3K7--AC090022.2^ENST00000369320.1" ; transcript_name "MAP3K7-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MSI2--AATF HAVANA gene 1673 54046 . + . FI_gene_label "MSI2^ENSG00000153944.12" ; ID "MSI2--AATF^MSI2^ENSG00000153944.12" ; ccdsid "CCDS11596.1" ; exon_id "ENSE00002219180.3" ; exon_number 1 ; gene_id "MSI2--AATF^MSI2^ENSG00000153944.12" ; gene_name MSI2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178398.4" ; havana_transcript "OTTHUMT00000441813.2" ; hgnc_id "HGNC:18585" ; level 2 ; orig_coord_info "chr17,57256743,57256804,+" ; protein_id "ENSP00000284073.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MSI2--AATF^ENST00000284073.7" ; transcript_name "MSI2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MSI2--AATF HAVANA mRNA 1673 54046 . + . FI_gene_label "MSI2^ENSG00000153944.12" ; ID "MSI2--AATF^ENST00000284073.7" ; Parent "MSI2--AATF^MSI2^ENSG00000153944.12" ; ccdsid "CCDS11596.1" ; exon_id "ENSE00002219180.3" ; exon_number 1 ; gene_id "MSI2--AATF^MSI2^ENSG00000153944.12" ; gene_name MSI2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178398.4" ; havana_transcript "OTTHUMT00000441813.2" ; hgnc_id "HGNC:18585" ; level 2 ; orig_coord_info "chr17,57256743,57256804,+" ; protein_id "ENSP00000284073.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MSI2--AATF^ENST00000284073.7" ; transcript_name "MSI2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MSI2--AATF HAVANA gene 64284 72192 . + . FI_gene_label "AATF^ENSG00000275700.6" ; ID "MSI2--AATF^AATF^ENSG00000275700.6" ; exon_id "ENSE00003729439.1" ; exon_number 1 ; gene_id "MSI2--AATF^AATF^ENSG00000275700.6" ; gene_name AATF ; gene_type protein_coding ; havana_gene "OTTHUMG00000188458.3" ; havana_transcript "OTTHUMT00000477301.1" ; hgnc_id "HGNC:19235" ; level 2 ; orig_coord_info "chr17,36988658,36988720,+" ; protein_id "ENSP00000480472.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "MSI2--AATF^ENST00000610798.4" ; transcript_name "AATF-201" ; transcript_support_level 2 ; transcript_type protein_coding
MSI2--AATF HAVANA mRNA 64284 72192 . + . FI_gene_label "AATF^ENSG00000275700.6" ; ID "MSI2--AATF^ENST00000610798.4" ; Parent "MSI2--AATF^AATF^ENSG00000275700.6" ; exon_id "ENSE00003729439.1" ; exon_number 1 ; gene_id "MSI2--AATF^AATF^ENSG00000275700.6" ; gene_name AATF ; gene_type protein_coding ; havana_gene "OTTHUMG00000188458.3" ; havana_transcript "OTTHUMT00000477301.1" ; hgnc_id "HGNC:19235" ; level 2 ; orig_coord_info "chr17,36988658,36988720,+" ; protein_id "ENSP00000480472.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "MSI2--AATF^ENST00000610798.4" ; transcript_name "AATF-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MTMR6--PLD5 HAVANA gene 21660 35168 . + . FI_gene_label "PLD5^ENSG00000180287.17" ; ID "MTMR6--PLD5^PLD5^ENSG00000180287.17" ; exon_id "ENSE00001234020.1" ; exon_number 1 ; gene_id "MTMR6--PLD5^PLD5^ENSG00000180287.17" ; gene_name PLD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000039867.4" ; havana_transcript "OTTHUMT00000096187.2" ; hgnc_id "HGNC:26879" ; level 2 ; orig_coord_info "chr1,242449354,242449356,-" ; protein_id "ENSP00000314748.6" ; transcript_id "MTMR6--PLD5^ENST00000314833.10" ; transcript_name "PLD5-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
MTMR6--PLD5 HAVANA mRNA 21660 35168 . + . FI_gene_label "PLD5^ENSG00000180287.17" ; ID "MTMR6--PLD5^ENST00000314833.10" ; Parent "MTMR6--PLD5^PLD5^ENSG00000180287.17" ; exon_id "ENSE00001234020.1" ; exon_number 1 ; gene_id "MTMR6--PLD5^PLD5^ENSG00000180287.17" ; gene_name PLD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000039867.4" ; havana_transcript "OTTHUMT00000096187.2" ; hgnc_id "HGNC:26879" ; level 2 ; orig_coord_info "chr1,242449354,242449356,-" ; protein_id "ENSP00000314748.6" ; transcript_id "MTMR6--PLD5^ENST00000314833.10" ; transcript_name "PLD5-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
MTMR6--PLD5 HAVANA gene 1001 17023 . + . FI_gene_label "MTMR6^ENSG00000139505.12" ; ID "MTMR6--PLD5^MTMR6^ENSG00000139505.12" ; ccdsid "CCDS9313.1" ; exon_id "ENSE00001912344.2" ; exon_number 1 ; gene_id "MTMR6--PLD5^MTMR6^ENSG00000139505.12" ; gene_name MTMR6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016606.1" ; havana_transcript "OTTHUMT00000044225.1" ; hgnc_id "HGNC:7453" ; level 2 ; orig_coord_info "chr13,25287224,25287247,-" ; protein_id "ENSP00000371221.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MTMR6--PLD5^ENST00000381801.6" ; transcript_name "MTMR6-201" ; transcript_support_level 1 ; transcript_type protein_coding
MTMR6--PLD5 HAVANA mRNA 1001 17023 . + . FI_gene_label "MTMR6^ENSG00000139505.12" ; ID "MTMR6--PLD5^ENST00000381801.6" ; Parent "MTMR6--PLD5^MTMR6^ENSG00000139505.12" ; ccdsid "CCDS9313.1" ; exon_id "ENSE00001912344.2" ; exon_number 1 ; gene_id "MTMR6--PLD5^MTMR6^ENSG00000139505.12" ; gene_name MTMR6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016606.1" ; havana_transcript "OTTHUMT00000044225.1" ; hgnc_id "HGNC:7453" ; level 2 ; orig_coord_info "chr13,25287224,25287247,-" ; protein_id "ENSP00000371221.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MTMR6--PLD5^ENST00000381801.6" ; transcript_name "MTMR6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NCOA4--RET HAVANA gene 17674 38294 . + . FI_gene_label "RET^ENSG00000165731.20" ; ID "NCOA4--RET^RET^ENSG00000165731.20" ; ccdsid "CCDS53525.1" ; exon_id "ENSE00003744437.1" ; exon_number 1 ; gene_id "NCOA4--RET^RET^ENSG00000165731.20" ; gene_name RET ; gene_type protein_coding ; havana_gene "OTTHUMG00000018024.7" ; havana_transcript "OTTHUMT00000358138.3" ; hgnc_id "HGNC:9967" ; level 2 ; orig_coord_info "chr10,43077259,43077331,+" ; protein_id "ENSP00000344798.4" ; tag basic CCDS ; transcript_id "NCOA4--RET^ENST00000340058.6" ; transcript_name "RET-201" ; transcript_support_level 1 ; transcript_type protein_coding
NCOA4--RET HAVANA mRNA 17674 38294 . + . FI_gene_label "RET^ENSG00000165731.20" ; ID "NCOA4--RET^ENST00000340058.6" ; Parent "NCOA4--RET^RET^ENSG00000165731.20" ; ccdsid "CCDS53525.1" ; exon_id "ENSE00003744437.1" ; exon_number 1 ; gene_id "NCOA4--RET^RET^ENSG00000165731.20" ; gene_name RET ; gene_type protein_coding ; havana_gene "OTTHUMG00000018024.7" ; havana_transcript "OTTHUMT00000358138.3" ; hgnc_id "HGNC:9967" ; level 2 ; orig_coord_info "chr10,43077259,43077331,+" ; protein_id "ENSP00000344798.4" ; tag basic CCDS ; transcript_id "NCOA4--RET^ENST00000340058.6" ; transcript_name "RET-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NCOA4--RET HAVANA gene 1017 13344 . + . FI_gene_label "NCOA4^ENSG00000266412.6" ; ID "NCOA4--RET^NCOA4^ENSG00000266412.6" ; ccdsid "CCDS73094.1" ; exon_id "ENSE00002732991.1" ; exon_number 2 ; gene_id "NCOA4--RET^NCOA4^ENSG00000266412.6" ; gene_name NCOA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188314.1" ; havana_transcript "OTTHUMT00000476878.1" ; hgnc_id "HGNC:7671" ; level 2 ; orig_coord_info "chr10,46027432,46027465,-" ; protein_id "ENSP00000463027.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "NCOA4--RET^ENST00000578454.5" ; transcript_name "NCOA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NCOA4--RET HAVANA mRNA 1017 13344 . + . FI_gene_label "NCOA4^ENSG00000266412.6" ; ID "NCOA4--RET^ENST00000578454.5" ; Parent "NCOA4--RET^NCOA4^ENSG00000266412.6" ; ccdsid "CCDS73094.1" ; exon_id "ENSE00002732991.1" ; exon_number 2 ; gene_id "NCOA4--RET^NCOA4^ENSG00000266412.6" ; gene_name NCOA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188314.1" ; havana_transcript "OTTHUMT00000476878.1" ; hgnc_id "HGNC:7671" ; level 2 ; orig_coord_info "chr10,46027432,46027465,-" ; protein_id "ENSP00000463027.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "NCOA4--RET^ENST00000578454.5" ; transcript_name "NCOA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPLOC4--AMZ2P1 HAVANA gene 2037 31739 . + . FI_gene_label "NPLOC4^ENSG00000182446.14" ; ID "NPLOC4--AMZ2P1^NPLOC4^ENSG00000182446.14" ; ccdsid "CCDS45812.1" ; exon_id "ENSE00002649665.2" ; exon_number 1 ; gene_id "NPLOC4--AMZ2P1^NPLOC4^ENSG00000182446.14" ; gene_name NPLOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177990.5" ; havana_transcript "OTTHUMT00000440140.2" ; hgnc_id "HGNC:18261" ; level 2 ; orig_coord_info "chr17,81636916,81636930,-" ; protein_id "ENSP00000331487.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPLOC4--AMZ2P1^ENST00000331134.11" ; transcript_name "NPLOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPLOC4--AMZ2P1 HAVANA mRNA 2037 31739 . + . FI_gene_label "NPLOC4^ENSG00000182446.14" ; ID "NPLOC4--AMZ2P1^ENST00000331134.11" ; Parent "NPLOC4--AMZ2P1^NPLOC4^ENSG00000182446.14" ; ccdsid "CCDS45812.1" ; exon_id "ENSE00002649665.2" ; exon_number 1 ; gene_id "NPLOC4--AMZ2P1^NPLOC4^ENSG00000182446.14" ; gene_name NPLOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177990.5" ; havana_transcript "OTTHUMT00000440140.2" ; hgnc_id "HGNC:18261" ; level 2 ; orig_coord_info "chr17,81636916,81636930,-" ; protein_id "ENSP00000331487.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPLOC4--AMZ2P1^ENST00000331134.11" ; transcript_name "NPLOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPLOC4--GNA13 HAVANA gene 2037 31739 . + . FI_gene_label "NPLOC4^ENSG00000182446.14" ; ID "NPLOC4--GNA13^NPLOC4^ENSG00000182446.14" ; ccdsid "CCDS45812.1" ; exon_id "ENSE00002649665.2" ; exon_number 1 ; gene_id "NPLOC4--GNA13^NPLOC4^ENSG00000182446.14" ; gene_name NPLOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177990.5" ; havana_transcript "OTTHUMT00000440140.2" ; hgnc_id "HGNC:18261" ; level 2 ; orig_coord_info "chr17,81636916,81636930,-" ; protein_id "ENSP00000331487.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPLOC4--GNA13^ENST00000331134.11" ; transcript_name "NPLOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPLOC4--GNA13 HAVANA mRNA 2037 31739 . + . FI_gene_label "NPLOC4^ENSG00000182446.14" ; ID "NPLOC4--GNA13^ENST00000331134.11" ; Parent "NPLOC4--GNA13^NPLOC4^ENSG00000182446.14" ; ccdsid "CCDS45812.1" ; exon_id "ENSE00002649665.2" ; exon_number 1 ; gene_id "NPLOC4--GNA13^NPLOC4^ENSG00000182446.14" ; gene_name NPLOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177990.5" ; havana_transcript "OTTHUMT00000440140.2" ; hgnc_id "HGNC:18261" ; level 2 ; orig_coord_info "chr17,81636916,81636930,-" ; protein_id "ENSP00000331487.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPLOC4--GNA13^ENST00000331134.11" ; transcript_name "NPLOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPLOC4--GNA13 HAVANA gene 34740 44706 . + . FI_gene_label "GNA13^ENSG00000120063.10" ; ID "NPLOC4--GNA13^GNA13^ENSG00000120063.10" ; ccdsid "CCDS11661.1" ; exon_id "ENSE00001229026.4" ; exon_number 1 ; gene_id "NPLOC4--GNA13^GNA13^ENSG00000120063.10" ; gene_name GNA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179316.2" ; havana_transcript "OTTHUMT00000445720.2" ; hgnc_id "HGNC:4381" ; level 2 ; orig_coord_info "chr17,65056311,65056593,-" ; protein_id "ENSP00000400717.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPLOC4--GNA13^ENST00000439174.7" ; transcript_name "GNA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPLOC4--GNA13 HAVANA mRNA 34740 44706 . + . FI_gene_label "GNA13^ENSG00000120063.10" ; ID "NPLOC4--GNA13^ENST00000439174.7" ; Parent "NPLOC4--GNA13^GNA13^ENSG00000120063.10" ; ccdsid "CCDS11661.1" ; exon_id "ENSE00001229026.4" ; exon_number 1 ; gene_id "NPLOC4--GNA13^GNA13^ENSG00000120063.10" ; gene_name GNA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179316.2" ; havana_transcript "OTTHUMT00000445720.2" ; hgnc_id "HGNC:4381" ; level 2 ; orig_coord_info "chr17,65056311,65056593,-" ; protein_id "ENSP00000400717.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPLOC4--GNA13^ENST00000439174.7" ; transcript_name "GNA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NSF--DUSP14 HAVANA gene 1001 25874 . + . FI_gene_label "NSF^ENSG00000073969.18" ; ID "NSF--DUSP14^NSF^ENSG00000073969.18" ; ccdsid "CCDS42354.1" ; exon_id "ENSE00002645985.1" ; exon_number 1 ; gene_id "NSF--DUSP14^NSF^ENSG00000073969.18" ; gene_name NSF ; gene_type protein_coding ; havana_gene "OTTHUMG00000134315.6" ; havana_transcript "OTTHUMT00000259348.2" ; hgnc_id "HGNC:8016" ; level 2 ; orig_coord_info "chr17,46590776,46590787,+" ; protein_id "ENSP00000381293.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NSF--DUSP14^ENST00000398238.8" ; transcript_name "NSF-201" ; transcript_support_level 1 ; transcript_type protein_coding
NSF--DUSP14 HAVANA mRNA 1001 25874 . + . FI_gene_label "NSF^ENSG00000073969.18" ; ID "NSF--DUSP14^ENST00000398238.8" ; Parent "NSF--DUSP14^NSF^ENSG00000073969.18" ; ccdsid "CCDS42354.1" ; exon_id "ENSE00002645985.1" ; exon_number 1 ; gene_id "NSF--DUSP14^NSF^ENSG00000073969.18" ; gene_name NSF ; gene_type protein_coding ; havana_gene "OTTHUMG00000134315.6" ; havana_transcript "OTTHUMT00000259348.2" ; hgnc_id "HGNC:8016" ; level 2 ; orig_coord_info "chr17,46590776,46590787,+" ; protein_id "ENSP00000381293.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NSF--DUSP14^ENST00000398238.8" ; transcript_name "NSF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NSF--DUSP14 HAVANA gene 29943 34299 . + . FI_gene_label "DUSP14^ENSG00000276023.5" ; ID "NSF--DUSP14^DUSP14^ENSG00000276023.5" ; ccdsid "CCDS11320.1" ; exon_id "ENSE00003733347.1" ; exon_number 3 ; gene_id "NSF--DUSP14^DUSP14^ENSG00000276023.5" ; gene_name DUSP14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188472.2" ; havana_transcript "OTTHUMT00000477362.1" ; hgnc_id "HGNC:17007" ; level 2 ; orig_coord_info "chr17,37512273,37512866,+" ; protein_id "ENSP00000484091.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "NSF--DUSP14^ENST00000613659.1" ; transcript_name "DUSP14-204" ; transcript_support_level 2 ; transcript_type protein_coding
NSF--DUSP14 HAVANA mRNA 29943 34299 . + . FI_gene_label "DUSP14^ENSG00000276023.5" ; ID "NSF--DUSP14^ENST00000613659.1" ; Parent "NSF--DUSP14^DUSP14^ENSG00000276023.5" ; ccdsid "CCDS11320.1" ; exon_id "ENSE00003733347.1" ; exon_number 3 ; gene_id "NSF--DUSP14^DUSP14^ENSG00000276023.5" ; gene_name DUSP14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188472.2" ; havana_transcript "OTTHUMT00000477362.1" ; hgnc_id "HGNC:17007" ; level 2 ; orig_coord_info "chr17,37512273,37512866,+" ; protein_id "ENSP00000484091.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "NSF--DUSP14^ENST00000613659.1" ; transcript_name "DUSP14-204" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
OSBPL3--LHPP HAVANA gene 2237 30949 . + . FI_gene_label "OSBPL3^ENSG00000070882.13" ; ID "OSBPL3--LHPP^OSBPL3^ENSG00000070882.13" ; ccdsid "CCDS5390.1" ; exon_id "ENSE00001335174.1" ; exon_number 2 ; gene_id "OSBPL3--LHPP^OSBPL3^ENSG00000070882.13" ; gene_name OSBPL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023277.8" ; havana_transcript "OTTHUMT00000214085.3" ; hgnc_id "HGNC:16370" ; level 2 ; orig_coord_info "chr7,24892377,24892472,-" ; protein_id "ENSP00000315410.2" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "OSBPL3--LHPP^ENST00000313367.7" ; transcript_name "OSBPL3-201" ; transcript_support_level 1 ; transcript_type protein_coding
OSBPL3--LHPP HAVANA mRNA 2237 30949 . + . FI_gene_label "OSBPL3^ENSG00000070882.13" ; ID "OSBPL3--LHPP^ENST00000313367.7" ; Parent "OSBPL3--LHPP^OSBPL3^ENSG00000070882.13" ; ccdsid "CCDS5390.1" ; exon_id "ENSE00001335174.1" ; exon_number 2 ; gene_id "OSBPL3--LHPP^OSBPL3^ENSG00000070882.13" ; gene_name OSBPL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023277.8" ; havana_transcript "OTTHUMT00000214085.3" ; hgnc_id "HGNC:16370" ; level 2 ; orig_coord_info "chr7,24892377,24892472,-" ; protein_id "ENSP00000315410.2" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "OSBPL3--LHPP^ENST00000313367.7" ; transcript_name "OSBPL3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OSBPL3--LHPP HAVANA gene 33970 46185 . + . FI_gene_label "LHPP^ENSG00000107902.14" ; ID "OSBPL3--LHPP^LHPP^ENSG00000107902.14" ; ccdsid "CCDS53587.1" ; exon_id "ENSE00001448086.1" ; exon_number 1 ; gene_id "OSBPL3--LHPP^LHPP^ENSG00000107902.14" ; gene_name LHPP ; gene_type protein_coding ; havana_gene "OTTHUMG00000019214.2" ; havana_transcript "OTTHUMT00000050876.1" ; hgnc_id "HGNC:30042" ; level 2 ; orig_coord_info "chr10,124461863,124461987,+" ; protein_id "ENSP00000357832.1" ; tag basic CCDS ; transcript_id "OSBPL3--LHPP^ENST00000368839.1" ; transcript_name "LHPP-201" ; transcript_support_level 1 ; transcript_type protein_coding
OSBPL3--LHPP HAVANA mRNA 33970 46185 . + . FI_gene_label "LHPP^ENSG00000107902.14" ; ID "OSBPL3--LHPP^ENST00000368839.1" ; Parent "OSBPL3--LHPP^LHPP^ENSG00000107902.14" ; ccdsid "CCDS53587.1" ; exon_id "ENSE00001448086.1" ; exon_number 1 ; gene_id "OSBPL3--LHPP^LHPP^ENSG00000107902.14" ; gene_name LHPP ; gene_type protein_coding ; havana_gene "OTTHUMG00000019214.2" ; havana_transcript "OTTHUMT00000050876.1" ; hgnc_id "HGNC:30042" ; level 2 ; orig_coord_info "chr10,124461863,124461987,+" ; protein_id "ENSP00000357832.1" ; tag basic CCDS ; transcript_id "OSBPL3--LHPP^ENST00000368839.1" ; transcript_name "LHPP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA8--PCDHA13 HAVANA gene 6617 15057 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA8--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA8--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA8--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA8--PCDHA13 HAVANA mRNA 6617 15057 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA8--PCDHA13^ENST00000289272.3" ; Parent "PCDHA8--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA8--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA8--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA8--PCDHA13 HAVANA gene 1001 3616 . + . FI_gene_label "PCDHA8^ENSG00000204962.6" ; ID "PCDHA8--PCDHA13^PCDHA8^ENSG00000204962.6" ; exon_id "ENSE00001476361.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHA13^PCDHA8^ENSG00000204962.6" ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4" ; havana_transcript "OTTHUMT00000477552.1" ; hgnc_id "HGNC:8674" ; level 2 ; orig_coord_info "chr5,140841322,140843763,+" ; protein_id "ENSP00000367363.3" ; tag basic ; transcript_id "PCDHA8--PCDHA13^ENST00000378123.4" ; transcript_name "PCDHA8-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA8--PCDHA13 HAVANA mRNA 1001 3616 . + . FI_gene_label "PCDHA8^ENSG00000204962.6" ; ID "PCDHA8--PCDHA13^ENST00000378123.4" ; Parent "PCDHA8--PCDHA13^PCDHA8^ENSG00000204962.6" ; exon_id "ENSE00001476361.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHA13^PCDHA8^ENSG00000204962.6" ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4" ; havana_transcript "OTTHUMT00000477552.1" ; hgnc_id "HGNC:8674" ; level 2 ; orig_coord_info "chr5,140841322,140843763,+" ; protein_id "ENSP00000367363.3" ; tag basic ; transcript_id "PCDHA8--PCDHA13^ENST00000378123.4" ; transcript_name "PCDHA8-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA8--PCDHAC1 HAVANA gene 6617 16632 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA8--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA8--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA8--PCDHAC1 HAVANA mRNA 6617 16632 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA8--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA8--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA8--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA8--PCDHAC1 HAVANA gene 1001 3616 . + . FI_gene_label "PCDHA8^ENSG00000204962.6" ; ID "PCDHA8--PCDHAC1^PCDHA8^ENSG00000204962.6" ; exon_id "ENSE00001476361.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC1^PCDHA8^ENSG00000204962.6" ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4" ; havana_transcript "OTTHUMT00000477552.1" ; hgnc_id "HGNC:8674" ; level 2 ; orig_coord_info "chr5,140841322,140843763,+" ; protein_id "ENSP00000367363.3" ; tag basic ; transcript_id "PCDHA8--PCDHAC1^ENST00000378123.4" ; transcript_name "PCDHA8-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA8--PCDHAC1 HAVANA mRNA 1001 3616 . + . FI_gene_label "PCDHA8^ENSG00000204962.6" ; ID "PCDHA8--PCDHAC1^ENST00000378123.4" ; Parent "PCDHA8--PCDHAC1^PCDHA8^ENSG00000204962.6" ; exon_id "ENSE00001476361.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC1^PCDHA8^ENSG00000204962.6" ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4" ; havana_transcript "OTTHUMT00000477552.1" ; hgnc_id "HGNC:8674" ; level 2 ; orig_coord_info "chr5,140841322,140843763,+" ; protein_id "ENSP00000367363.3" ; tag basic ; transcript_id "PCDHA8--PCDHAC1^ENST00000378123.4" ; transcript_name "PCDHA8-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA8--PCDHAC2 HAVANA gene 6623 17358 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA8--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA8--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA8--PCDHAC2 HAVANA mRNA 6623 17358 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA8--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA8--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA8--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA8--PCDHAC2 HAVANA gene 1001 3616 . + . FI_gene_label "PCDHA8^ENSG00000204962.6" ; ID "PCDHA8--PCDHAC2^PCDHA8^ENSG00000204962.6" ; exon_id "ENSE00001476361.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC2^PCDHA8^ENSG00000204962.6" ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4" ; havana_transcript "OTTHUMT00000477552.1" ; hgnc_id "HGNC:8674" ; level 2 ; orig_coord_info "chr5,140841322,140843763,+" ; protein_id "ENSP00000367363.3" ; tag basic ; transcript_id "PCDHA8--PCDHAC2^ENST00000378123.4" ; transcript_name "PCDHA8-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA8--PCDHAC2 HAVANA mRNA 1001 3616 . + . FI_gene_label "PCDHA8^ENSG00000204962.6" ; ID "PCDHA8--PCDHAC2^ENST00000378123.4" ; Parent "PCDHA8--PCDHAC2^PCDHA8^ENSG00000204962.6" ; exon_id "ENSE00001476361.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC2^PCDHA8^ENSG00000204962.6" ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4" ; havana_transcript "OTTHUMT00000477552.1" ; hgnc_id "HGNC:8674" ; level 2 ; orig_coord_info "chr5,140841322,140843763,+" ; protein_id "ENSP00000367363.3" ; tag basic ; transcript_id "PCDHA8--PCDHAC2^ENST00000378123.4" ; transcript_name "PCDHA8-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PRSS55--PRSS51 HAVANA gene 1001 6401 . + . FI_gene_label "PRSS55^ENSG00000184647.11" ; ID "PRSS55--PRSS51^PRSS55^ENSG00000184647.11" ; ccdsid "CCDS5976.1" ; exon_id "ENSE00003842310.1" ; exon_number 1 ; gene_id "PRSS55--PRSS51^PRSS55^ENSG00000184647.11" ; gene_name PRSS55 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129345.5" ; havana_transcript "OTTHUMT00000251493.4" ; hgnc_id "HGNC:30824" ; level 2 ; orig_coord_info "chr8,10525586,10525739,+" ; protein_id "ENSP00000333003.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRSS55--PRSS51^ENST00000328655.8" ; transcript_name "PRSS55-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRSS55--PRSS51 HAVANA mRNA 1001 6401 . + . FI_gene_label "PRSS55^ENSG00000184647.11" ; ID "PRSS55--PRSS51^ENST00000328655.8" ; Parent "PRSS55--PRSS51^PRSS55^ENSG00000184647.11" ; ccdsid "CCDS5976.1" ; exon_id "ENSE00003842310.1" ; exon_number 1 ; gene_id "PRSS55--PRSS51^PRSS55^ENSG00000184647.11" ; gene_name PRSS55 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129345.5" ; havana_transcript "OTTHUMT00000251493.4" ; hgnc_id "HGNC:30824" ; level 2 ; orig_coord_info "chr8,10525586,10525739,+" ; protein_id "ENSP00000333003.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRSS55--PRSS51^ENST00000328655.8" ; transcript_name "PRSS55-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRSS55--PRSS51 HAVANA gene 15307 20383 . + . FI_gene_label "PRSS51^ENSG00000253649.5" ; ID "PRSS55--PRSS51^PRSS51^ENSG00000253649.5" ; exon_id "ENSE00003794143.1" ; exon_number 1 ; gene_id "PRSS55--PRSS51^PRSS51^ENSG00000253649.5" ; gene_name PRSS51 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163805.5" ; havana_transcript "OTTHUMT00000489801.2" ; hgnc_id "HGNC:37321" ; level 2 ; orig_coord_info "chr8,10517894,10517954,-" ; protein_id "ENSP00000490515.1" ; tag basic ; transcript_id "PRSS55--PRSS51^ENST00000636217.1" ; transcript_name "PRSS51-203" ; transcript_support_level 5 ; transcript_type protein_coding
PRSS55--PRSS51 HAVANA mRNA 15307 20383 . + . FI_gene_label "PRSS51^ENSG00000253649.5" ; ID "PRSS55--PRSS51^ENST00000636217.1" ; Parent "PRSS55--PRSS51^PRSS51^ENSG00000253649.5" ; exon_id "ENSE00003794143.1" ; exon_number 1 ; gene_id "PRSS55--PRSS51^PRSS51^ENSG00000253649.5" ; gene_name PRSS51 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163805.5" ; havana_transcript "OTTHUMT00000489801.2" ; hgnc_id "HGNC:37321" ; level 2 ; orig_coord_info "chr8,10517894,10517954,-" ; protein_id "ENSP00000490515.1" ; tag basic ; transcript_id "PRSS55--PRSS51^ENST00000636217.1" ; transcript_name "PRSS51-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RAD21--EIF3H HAVANA gene 20882 36388 . + . FI_gene_label "EIF3H^ENSG00000147677.11" ; ID "RAD21--EIF3H^EIF3H^ENSG00000147677.11" ; exon_id "ENSE00002101437.1" ; exon_number 2 ; gene_id "RAD21--EIF3H^EIF3H^ENSG00000147677.11" ; gene_name EIF3H ; gene_type protein_coding ; havana_gene "OTTHUMG00000164919.3" ; havana_transcript "OTTHUMT00000380913.1" ; hgnc_id "HGNC:3273" ; level 1 ; orig_coord_info "chr8,116755952,116755993,-" ; protein_id "ENSP00000276682.4" ; tag basic exp_conf ; transcript_id "RAD21--EIF3H^ENST00000276682.8" ; transcript_name "EIF3H-201" ; transcript_support_level 2 ; transcript_type protein_coding
RAD21--EIF3H HAVANA mRNA 20882 36388 . + . FI_gene_label "EIF3H^ENSG00000147677.11" ; ID "RAD21--EIF3H^ENST00000276682.8" ; Parent "RAD21--EIF3H^EIF3H^ENSG00000147677.11" ; exon_id "ENSE00002101437.1" ; exon_number 2 ; gene_id "RAD21--EIF3H^EIF3H^ENSG00000147677.11" ; gene_name EIF3H ; gene_type protein_coding ; havana_gene "OTTHUMG00000164919.3" ; havana_transcript "OTTHUMT00000380913.1" ; hgnc_id "HGNC:3273" ; level 1 ; orig_coord_info "chr8,116755952,116755993,-" ; protein_id "ENSP00000276682.4" ; tag basic exp_conf ; transcript_id "RAD21--EIF3H^ENST00000276682.8" ; transcript_name "EIF3H-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RAD21--EIF3H HAVANA gene 1001 17211 . + . FI_gene_label "RAD21^ENSG00000164754.15" ; ID "RAD21--EIF3H^RAD21^ENSG00000164754.15" ; ccdsid "CCDS6321.1" ; exon_id "ENSE00003464650.1" ; exon_number 2 ; gene_id "RAD21--EIF3H^RAD21^ENSG00000164754.15" ; gene_name RAD21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164959.4" ; havana_transcript "OTTHUMT00000381184.2" ; hgnc_id "HGNC:9811" ; level 2 ; orig_coord_info "chr8,116866586,116866729,-" ; protein_id "ENSP00000297338.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAD21--EIF3H^ENST00000297338.7" ; transcript_name "RAD21-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAD21--EIF3H HAVANA mRNA 1001 17211 . + . FI_gene_label "RAD21^ENSG00000164754.15" ; ID "RAD21--EIF3H^ENST00000297338.7" ; Parent "RAD21--EIF3H^RAD21^ENSG00000164754.15" ; ccdsid "CCDS6321.1" ; exon_id "ENSE00003464650.1" ; exon_number 2 ; gene_id "RAD21--EIF3H^RAD21^ENSG00000164754.15" ; gene_name RAD21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164959.4" ; havana_transcript "OTTHUMT00000381184.2" ; hgnc_id "HGNC:9811" ; level 2 ; orig_coord_info "chr8,116866586,116866729,-" ; protein_id "ENSP00000297338.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAD21--EIF3H^ENST00000297338.7" ; transcript_name "RAD21-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RHOT1--CAVIN1 HAVANA gene 1001 25124 . + . FI_gene_label "RHOT1^ENSG00000126858.19" ; ID "RHOT1--CAVIN1^RHOT1^ENSG00000126858.19" ; ccdsid "CCDS32612.1" ; exon_id "ENSE00001519317.1" ; exon_number 1 ; gene_id "RHOT1--CAVIN1^RHOT1^ENSG00000126858.19" ; gene_name RHOT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179564.6" ; havana_transcript "OTTHUMT00000447097.1" ; hgnc_id "HGNC:21168" ; level 2 ; orig_coord_info "chr17,32142693,32142729,+" ; protein_id "ENSP00000334724.6" ; tag basic appris_principal_3 CCDS ; transcript_id "RHOT1--CAVIN1^ENST00000333942.10" ; transcript_name "RHOT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RHOT1--CAVIN1 HAVANA mRNA 1001 25124 . + . FI_gene_label "RHOT1^ENSG00000126858.19" ; ID "RHOT1--CAVIN1^ENST00000333942.10" ; Parent "RHOT1--CAVIN1^RHOT1^ENSG00000126858.19" ; ccdsid "CCDS32612.1" ; exon_id "ENSE00001519317.1" ; exon_number 1 ; gene_id "RHOT1--CAVIN1^RHOT1^ENSG00000126858.19" ; gene_name RHOT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179564.6" ; havana_transcript "OTTHUMT00000447097.1" ; hgnc_id "HGNC:21168" ; level 2 ; orig_coord_info "chr17,32142693,32142729,+" ; protein_id "ENSP00000334724.6" ; tag basic appris_principal_3 CCDS ; transcript_id "RHOT1--CAVIN1^ENST00000333942.10" ; transcript_name "RHOT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RHOT1--CAVIN1 HAVANA gene 30783 35352 . + . FI_gene_label "CAVIN1^ENSG00000177469.13" ; ID "RHOT1--CAVIN1^CAVIN1^ENSG00000177469.13" ; ccdsid "CCDS11425.1" ; exon_id "ENSE00001402213.5" ; exon_number 1 ; gene_id "RHOT1--CAVIN1^CAVIN1^ENSG00000177469.13" ; gene_name CAVIN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180137.2" ; havana_transcript "OTTHUMT00000449938.2" ; hgnc_id "HGNC:9688" ; level 2 ; orig_coord_info "chr17,42422627,42423097,-" ; protein_id "ENSP00000349541.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RHOT1--CAVIN1^ENST00000357037.6" ; transcript_name "CAVIN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RHOT1--CAVIN1 HAVANA mRNA 30783 35352 . + . FI_gene_label "CAVIN1^ENSG00000177469.13" ; ID "RHOT1--CAVIN1^ENST00000357037.6" ; Parent "RHOT1--CAVIN1^CAVIN1^ENSG00000177469.13" ; ccdsid "CCDS11425.1" ; exon_id "ENSE00001402213.5" ; exon_number 1 ; gene_id "RHOT1--CAVIN1^CAVIN1^ENSG00000177469.13" ; gene_name CAVIN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180137.2" ; havana_transcript "OTTHUMT00000449938.2" ; hgnc_id "HGNC:9688" ; level 2 ; orig_coord_info "chr17,42422627,42423097,-" ; protein_id "ENSP00000349541.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RHOT1--CAVIN1^ENST00000357037.6" ; transcript_name "CAVIN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF213--LINC02594 HAVANA gene 1005 21919 . + . FI_gene_label "RNF213^ENSG00000173821.19" ; ID "RNF213--LINC02594^RNF213^ENSG00000173821.19" ; ccdsid "CCDS11772.1" ; exon_id "ENSE00002677982.1" ; exon_number 2 ; gene_id "RNF213--LINC02594^RNF213^ENSG00000173821.19" ; gene_name RNF213 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161415.8" ; havana_transcript "OTTHUMT00000415454.2" ; hgnc_id "HGNC:14539" ; level 2 ; orig_coord_info "chr17,80263682,80263778,+" ; protein_id "ENSP00000324392.4" ; tag basic CCDS ; transcript_id "RNF213--LINC02594^ENST00000319921.4" ; transcript_name "RNF213-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF213--LINC02594 HAVANA mRNA 1005 21919 . + . FI_gene_label "RNF213^ENSG00000173821.19" ; ID "RNF213--LINC02594^ENST00000319921.4" ; Parent "RNF213--LINC02594^RNF213^ENSG00000173821.19" ; ccdsid "CCDS11772.1" ; exon_id "ENSE00002677982.1" ; exon_number 2 ; gene_id "RNF213--LINC02594^RNF213^ENSG00000173821.19" ; gene_name RNF213 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161415.8" ; havana_transcript "OTTHUMT00000415454.2" ; hgnc_id "HGNC:14539" ; level 2 ; orig_coord_info "chr17,80263682,80263778,+" ; protein_id "ENSP00000324392.4" ; tag basic CCDS ; transcript_id "RNF213--LINC02594^ENST00000319921.4" ; transcript_name "RNF213-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF213--MEOX1 HAVANA gene 81147 85820 . + . FI_gene_label "MEOX1^ENSG00000005102.14" ; ID "RNF213--MEOX1^MEOX1^ENSG00000005102.14" ; ccdsid "CCDS11466.1" ; exon_id "ENSE00002370542.2" ; exon_number 1 ; gene_id "RNF213--MEOX1^MEOX1^ENSG00000005102.14" ; gene_name MEOX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170513.3" ; havana_transcript "OTTHUMT00000409452.2" ; hgnc_id "HGNC:7013" ; level 2 ; orig_coord_info "chr17,43661066,43661534,-" ; protein_id "ENSP00000321684.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF213--MEOX1^ENST00000318579.9" ; transcript_name "MEOX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF213--MEOX1 HAVANA mRNA 81147 85820 . + . FI_gene_label "MEOX1^ENSG00000005102.14" ; ID "RNF213--MEOX1^ENST00000318579.9" ; Parent "RNF213--MEOX1^MEOX1^ENSG00000005102.14" ; ccdsid "CCDS11466.1" ; exon_id "ENSE00002370542.2" ; exon_number 1 ; gene_id "RNF213--MEOX1^MEOX1^ENSG00000005102.14" ; gene_name MEOX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170513.3" ; havana_transcript "OTTHUMT00000409452.2" ; hgnc_id "HGNC:7013" ; level 2 ; orig_coord_info "chr17,43661066,43661534,-" ; protein_id "ENSP00000321684.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF213--MEOX1^ENST00000318579.9" ; transcript_name "MEOX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF213--MEOX1 HAVANA gene 1005 21919 . + . FI_gene_label "RNF213^ENSG00000173821.19" ; ID "RNF213--MEOX1^RNF213^ENSG00000173821.19" ; ccdsid "CCDS11772.1" ; exon_id "ENSE00002677982.1" ; exon_number 2 ; gene_id "RNF213--MEOX1^RNF213^ENSG00000173821.19" ; gene_name RNF213 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161415.8" ; havana_transcript "OTTHUMT00000415454.2" ; hgnc_id "HGNC:14539" ; level 2 ; orig_coord_info "chr17,80263682,80263778,+" ; protein_id "ENSP00000324392.4" ; tag basic CCDS ; transcript_id "RNF213--MEOX1^ENST00000319921.4" ; transcript_name "RNF213-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF213--MEOX1 HAVANA mRNA 1005 21919 . + . FI_gene_label "RNF213^ENSG00000173821.19" ; ID "RNF213--MEOX1^ENST00000319921.4" ; Parent "RNF213--MEOX1^RNF213^ENSG00000173821.19" ; ccdsid "CCDS11772.1" ; exon_id "ENSE00002677982.1" ; exon_number 2 ; gene_id "RNF213--MEOX1^RNF213^ENSG00000173821.19" ; gene_name RNF213 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161415.8" ; havana_transcript "OTTHUMT00000415454.2" ; hgnc_id "HGNC:14539" ; level 2 ; orig_coord_info "chr17,80263682,80263778,+" ; protein_id "ENSP00000324392.4" ; tag basic CCDS ; transcript_id "RNF213--MEOX1^ENST00000319921.4" ; transcript_name "RNF213-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RP1L1--PRSS51 HAVANA gene 2232 14742 . + . FI_gene_label "RP1L1^ENSG00000183638.6" ; ID "RP1L1--PRSS51^RP1L1^ENSG00000183638.6" ; ccdsid "CCDS43708.1" ; exon_id "ENSE00003640044.1" ; exon_number 2 ; gene_id "RP1L1--PRSS51^RP1L1^ENSG00000183638.6" ; gene_name RP1L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163806.2" ; havana_transcript "OTTHUMT00000375673.2" ; hgnc_id "HGNC:15946" ; level 2 ; orig_coord_info "chr8,10622593,10623201,-" ; protein_id "ENSP00000371923.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RP1L1--PRSS51^ENST00000382483.4" ; transcript_name "RP1L1-202" ; transcript_support_level 1 ; transcript_type protein_coding
RP1L1--PRSS51 HAVANA mRNA 2232 14742 . + . FI_gene_label "RP1L1^ENSG00000183638.6" ; ID "RP1L1--PRSS51^ENST00000382483.4" ; Parent "RP1L1--PRSS51^RP1L1^ENSG00000183638.6" ; ccdsid "CCDS43708.1" ; exon_id "ENSE00003640044.1" ; exon_number 2 ; gene_id "RP1L1--PRSS51^RP1L1^ENSG00000183638.6" ; gene_name RP1L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163806.2" ; havana_transcript "OTTHUMT00000375673.2" ; hgnc_id "HGNC:15946" ; level 2 ; orig_coord_info "chr8,10622593,10623201,-" ; protein_id "ENSP00000371923.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RP1L1--PRSS51^ENST00000382483.4" ; transcript_name "RP1L1-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RP1L1--PRSS51 HAVANA gene 18899 23975 . + . FI_gene_label "PRSS51^ENSG00000253649.5" ; ID "RP1L1--PRSS51^PRSS51^ENSG00000253649.5" ; exon_id "ENSE00003794143.1" ; exon_number 1 ; gene_id "RP1L1--PRSS51^PRSS51^ENSG00000253649.5" ; gene_name PRSS51 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163805.5" ; havana_transcript "OTTHUMT00000489801.2" ; hgnc_id "HGNC:37321" ; level 2 ; orig_coord_info "chr8,10517894,10517954,-" ; protein_id "ENSP00000490515.1" ; tag basic ; transcript_id "RP1L1--PRSS51^ENST00000636217.1" ; transcript_name "PRSS51-203" ; transcript_support_level 5 ; transcript_type protein_coding
RP1L1--PRSS51 HAVANA mRNA 18899 23975 . + . FI_gene_label "PRSS51^ENSG00000253649.5" ; ID "RP1L1--PRSS51^ENST00000636217.1" ; Parent "RP1L1--PRSS51^PRSS51^ENSG00000253649.5" ; exon_id "ENSE00003794143.1" ; exon_number 1 ; gene_id "RP1L1--PRSS51^PRSS51^ENSG00000253649.5" ; gene_name PRSS51 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163805.5" ; havana_transcript "OTTHUMT00000489801.2" ; hgnc_id "HGNC:37321" ; level 2 ; orig_coord_info "chr8,10517894,10517954,-" ; protein_id "ENSP00000490515.1" ; tag basic ; transcript_id "RP1L1--PRSS51^ENST00000636217.1" ; transcript_name "PRSS51-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
S100PBP--FP236383.3 HAVANA gene 1887 22190 . + . FI_gene_label "S100PBP^ENSG00000116497.18" ; ID "S100PBP--FP236383.3^S100PBP^ENSG00000116497.18" ; ccdsid "CCDS30666.1" ; exon_id "ENSE00003679277.1" ; exon_number 3 ; gene_id "S100PBP--FP236383.3^S100PBP^ENSG00000116497.18" ; gene_name S100PBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000003955.9" ; havana_transcript "OTTHUMT00000011266.3" ; hgnc_id "HGNC:25768" ; level 2 ; orig_coord_info "chr1,32826100,32826930,+" ; protein_id "ENSP00000362574.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "S100PBP--FP236383.3^ENST00000373475.10" ; transcript_name "S100PBP-202" ; transcript_support_level 1 ; transcript_type protein_coding
S100PBP--FP236383.3 HAVANA mRNA 1887 22190 . + . FI_gene_label "S100PBP^ENSG00000116497.18" ; ID "S100PBP--FP236383.3^ENST00000373475.10" ; Parent "S100PBP--FP236383.3^S100PBP^ENSG00000116497.18" ; ccdsid "CCDS30666.1" ; exon_id "ENSE00003679277.1" ; exon_number 3 ; gene_id "S100PBP--FP236383.3^S100PBP^ENSG00000116497.18" ; gene_name S100PBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000003955.9" ; havana_transcript "OTTHUMT00000011266.3" ; hgnc_id "HGNC:25768" ; level 2 ; orig_coord_info "chr1,32826100,32826930,+" ; protein_id "ENSP00000362574.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "S100PBP--FP236383.3^ENST00000373475.10" ; transcript_name "S100PBP-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SBF2--TCF12 HAVANA gene 1001 59812 . + . FI_gene_label "SBF2^ENSG00000133812.17" ; ID "SBF2--TCF12^SBF2^ENSG00000133812.17" ; ccdsid "CCDS31427.1" ; exon_id "ENSE00003900171.1" ; exon_number 1 ; gene_id "SBF2--TCF12^SBF2^ENSG00000133812.17" ; gene_name SBF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165890.3" ; havana_transcript "OTTHUMT00000386911.2" ; hgnc_id "HGNC:2135" ; level 2 ; orig_coord_info "chr11,10294015,10294069,-" ; protein_id "ENSP00000256190.8" ; tag basic appris_principal_2 CCDS ; transcript_id "SBF2--TCF12^ENST00000256190.13" ; transcript_name "SBF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SBF2--TCF12 HAVANA mRNA 1001 59812 . + . FI_gene_label "SBF2^ENSG00000133812.17" ; ID "SBF2--TCF12^ENST00000256190.13" ; Parent "SBF2--TCF12^SBF2^ENSG00000133812.17" ; ccdsid "CCDS31427.1" ; exon_id "ENSE00003900171.1" ; exon_number 1 ; gene_id "SBF2--TCF12^SBF2^ENSG00000133812.17" ; gene_name SBF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165890.3" ; havana_transcript "OTTHUMT00000386911.2" ; hgnc_id "HGNC:2135" ; level 2 ; orig_coord_info "chr11,10294015,10294069,-" ; protein_id "ENSP00000256190.8" ; tag basic appris_principal_2 CCDS ; transcript_id "SBF2--TCF12^ENST00000256190.13" ; transcript_name "SBF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SBF2--TCF12 HAVANA gene 62816 99554 . + . FI_gene_label "TCF12^ENSG00000140262.18" ; ID "SBF2--TCF12^TCF12^ENSG00000140262.18" ; ccdsid "CCDS10159.1" ; exon_id "ENSE00003647364.1" ; exon_number 2 ; gene_id "SBF2--TCF12^TCF12^ENSG00000140262.18" ; gene_name TCF12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132047.13" ; havana_transcript "OTTHUMT00000255069.3" ; hgnc_id "HGNC:11623" ; level 2 ; orig_coord_info "chr15,56919914,56919988,+" ; protein_id "ENSP00000267811.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "SBF2--TCF12^ENST00000267811.9" ; transcript_name "TCF12-201" ; transcript_support_level 1 ; transcript_type protein_coding
SBF2--TCF12 HAVANA mRNA 62816 99554 . + . FI_gene_label "TCF12^ENSG00000140262.18" ; ID "SBF2--TCF12^ENST00000267811.9" ; Parent "SBF2--TCF12^TCF12^ENSG00000140262.18" ; ccdsid "CCDS10159.1" ; exon_id "ENSE00003647364.1" ; exon_number 2 ; gene_id "SBF2--TCF12^TCF12^ENSG00000140262.18" ; gene_name TCF12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132047.13" ; havana_transcript "OTTHUMT00000255069.3" ; hgnc_id "HGNC:11623" ; level 2 ; orig_coord_info "chr15,56919914,56919988,+" ; protein_id "ENSP00000267811.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "SBF2--TCF12^ENST00000267811.9" ; transcript_name "TCF12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SPECC1L--LINC00683 HAVANA gene 1015 25915 . + . FI_gene_label "SPECC1L^ENSG00000100014.20" ; ID "SPECC1L--LINC00683^SPECC1L^ENSG00000100014.20" ; ccdsid "CCDS33619.1" ; exon_id "ENSE00003491742.1" ; exon_number 3 ; gene_id "SPECC1L--LINC00683^SPECC1L^ENSG00000100014.20" ; gene_name SPECC1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000171450.9" ; havana_transcript "OTTHUMT00000319986.4" ; hgnc_id "HGNC:29022" ; level 2 ; orig_coord_info "chr22,24302232,24302384,+" ; protein_id "ENSP00000325785.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SPECC1L--LINC00683^ENST00000314328.14" ; transcript_name "SPECC1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
SPECC1L--LINC00683 HAVANA mRNA 1015 25915 . + . FI_gene_label "SPECC1L^ENSG00000100014.20" ; ID "SPECC1L--LINC00683^ENST00000314328.14" ; Parent "SPECC1L--LINC00683^SPECC1L^ENSG00000100014.20" ; ccdsid "CCDS33619.1" ; exon_id "ENSE00003491742.1" ; exon_number 3 ; gene_id "SPECC1L--LINC00683^SPECC1L^ENSG00000100014.20" ; gene_name SPECC1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000171450.9" ; havana_transcript "OTTHUMT00000319986.4" ; hgnc_id "HGNC:29022" ; level 2 ; orig_coord_info "chr22,24302232,24302384,+" ; protein_id "ENSP00000325785.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SPECC1L--LINC00683^ENST00000314328.14" ; transcript_name "SPECC1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXNDC5--HIVEP1 HAVANA gene 18273 39113 . + . FI_gene_label "HIVEP1^ENSG00000095951.17" ; ID "TXNDC5--HIVEP1^HIVEP1^ENSG00000095951.17" ; ccdsid "CCDS43426.1" ; exon_id "ENSE00003663871.1" ; exon_number 2 ; gene_id "TXNDC5--HIVEP1^HIVEP1^ENSG00000095951.17" ; gene_name HIVEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014265.5" ; havana_transcript "OTTHUMT00000039870.4" ; hgnc_id "HGNC:4920" ; level 2 ; orig_coord_info "chr6,12015629,12015668,+" ; protein_id "ENSP00000368698.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TXNDC5--HIVEP1^ENST00000379388.7" ; transcript_name "HIVEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXNDC5--HIVEP1 HAVANA mRNA 18273 39113 . + . FI_gene_label "HIVEP1^ENSG00000095951.17" ; ID "TXNDC5--HIVEP1^ENST00000379388.7" ; Parent "TXNDC5--HIVEP1^HIVEP1^ENSG00000095951.17" ; ccdsid "CCDS43426.1" ; exon_id "ENSE00003663871.1" ; exon_number 2 ; gene_id "TXNDC5--HIVEP1^HIVEP1^ENSG00000095951.17" ; gene_name HIVEP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014265.5" ; havana_transcript "OTTHUMT00000039870.4" ; hgnc_id "HGNC:4920" ; level 2 ; orig_coord_info "chr6,12015629,12015668,+" ; protein_id "ENSP00000368698.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TXNDC5--HIVEP1^ENST00000379388.7" ; transcript_name "HIVEP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXNDC5--HIVEP1 HAVANA gene 1001 13846 . + . FI_gene_label "TXNDC5^ENSG00000239264.9" ; ID "TXNDC5--HIVEP1^TXNDC5^ENSG00000239264.9" ; ccdsid "CCDS4505.1" ; exon_id "ENSE00001482400.5" ; exon_number 1 ; gene_id "TXNDC5--HIVEP1^TXNDC5^ENSG00000239264.9" ; gene_name TXNDC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014216.4" ; havana_transcript "OTTHUMT00000039792.2" ; hgnc_id "HGNC:21073" ; level 2 ; orig_coord_info "chr6,7910514,7910776,-" ; protein_id "ENSP00000369081.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXNDC5--HIVEP1^ENST00000379757.9" ; transcript_name "TXNDC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXNDC5--HIVEP1 HAVANA mRNA 1001 13846 . + . FI_gene_label "TXNDC5^ENSG00000239264.9" ; ID "TXNDC5--HIVEP1^ENST00000379757.9" ; Parent "TXNDC5--HIVEP1^TXNDC5^ENSG00000239264.9" ; ccdsid "CCDS4505.1" ; exon_id "ENSE00001482400.5" ; exon_number 1 ; gene_id "TXNDC5--HIVEP1^TXNDC5^ENSG00000239264.9" ; gene_name TXNDC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014216.4" ; havana_transcript "OTTHUMT00000039792.2" ; hgnc_id "HGNC:21073" ; level 2 ; orig_coord_info "chr6,7910514,7910776,-" ; protein_id "ENSP00000369081.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXNDC5--HIVEP1^ENST00000379757.9" ; transcript_name "TXNDC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP3--HERC1 ENSEMBL gene 4685 28031 . + . FI_gene_label "USP3^ENSG00000140455.17" ; ID "USP3--HERC1^USP3^ENSG00000140455.17" ; exon_id "ENSE00003718945.1" ; exon_number 1 ; gene_id "USP3--HERC1^USP3^ENSG00000140455.17" ; gene_name USP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172309.4" ; hgnc_id "HGNC:12626" ; level 3 ; orig_coord_info "chr15,63529142,63529166,+" ; protein_id "ENSP00000268049.7" ; tag basic ; transcript_id "USP3--HERC1^ENST00000268049.11" ; transcript_name "USP3-201" ; transcript_support_level 5 ; transcript_type protein_coding
USP3--HERC1 ENSEMBL mRNA 4685 28031 . + . FI_gene_label "USP3^ENSG00000140455.17" ; ID "USP3--HERC1^ENST00000268049.11" ; Parent "USP3--HERC1^USP3^ENSG00000140455.17" ; exon_id "ENSE00003718945.1" ; exon_number 1 ; gene_id "USP3--HERC1^USP3^ENSG00000140455.17" ; gene_name USP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172309.4" ; hgnc_id "HGNC:12626" ; level 3 ; orig_coord_info "chr15,63529142,63529166,+" ; protein_id "ENSP00000268049.7" ; tag basic ; transcript_id "USP3--HERC1^ENST00000268049.11" ; transcript_name "USP3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
USP3--HERC1 HAVANA gene 31032 114524 . + . FI_gene_label "HERC1^ENSG00000103657.14" ; ID "USP3--HERC1^HERC1^ENSG00000103657.14" ; ccdsid "CCDS45277.1" ; exon_id "ENSE00003588587.1" ; exon_number 2 ; gene_id "USP3--HERC1^HERC1^ENSG00000103657.14" ; gene_name HERC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172433.6" ; havana_transcript "OTTHUMT00000418523.2" ; hgnc_id "HGNC:4867" ; level 2 ; orig_coord_info "chr15,63774694,63775623,-" ; protein_id "ENSP00000390158.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP3--HERC1^ENST00000443617.7" ; transcript_name "HERC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP3--HERC1 HAVANA mRNA 31032 114524 . + . FI_gene_label "HERC1^ENSG00000103657.14" ; ID "USP3--HERC1^ENST00000443617.7" ; Parent "USP3--HERC1^HERC1^ENSG00000103657.14" ; ccdsid "CCDS45277.1" ; exon_id "ENSE00003588587.1" ; exon_number 2 ; gene_id "USP3--HERC1^HERC1^ENSG00000103657.14" ; gene_name HERC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172433.6" ; havana_transcript "OTTHUMT00000418523.2" ; hgnc_id "HGNC:4867" ; level 2 ; orig_coord_info "chr15,63774694,63775623,-" ; protein_id "ENSP00000390158.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP3--HERC1^ENST00000443617.7" ; transcript_name "HERC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP7--CARHSP1 HAVANA gene 37909 48058 . + . FI_gene_label "CARHSP1^ENSG00000153048.11" ; ID "USP7--CARHSP1^CARHSP1^ENSG00000153048.11" ; ccdsid "CCDS10537.1" ; exon_id "ENSE00003650612.1" ; exon_number 2 ; gene_id "USP7--CARHSP1^CARHSP1^ENSG00000153048.11" ; gene_name CARHSP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129695.5" ; havana_transcript "OTTHUMT00000434250.2" ; hgnc_id "HGNC:17150" ; level 2 ; orig_coord_info "chr16,8859171,8859328,-" ; protein_id "ENSP00000311847.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP7--CARHSP1^ENST00000311052.10" ; transcript_name "CARHSP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP7--CARHSP1 HAVANA mRNA 37909 48058 . + . FI_gene_label "CARHSP1^ENSG00000153048.11" ; ID "USP7--CARHSP1^ENST00000311052.10" ; Parent "USP7--CARHSP1^CARHSP1^ENSG00000153048.11" ; ccdsid "CCDS10537.1" ; exon_id "ENSE00003650612.1" ; exon_number 2 ; gene_id "USP7--CARHSP1^CARHSP1^ENSG00000153048.11" ; gene_name CARHSP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129695.5" ; havana_transcript "OTTHUMT00000434250.2" ; hgnc_id "HGNC:17150" ; level 2 ; orig_coord_info "chr16,8859171,8859328,-" ; protein_id "ENSP00000311847.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP7--CARHSP1^ENST00000311052.10" ; transcript_name "CARHSP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP7--CARHSP1 HAVANA gene 2844 34902 . + . FI_gene_label "USP7^ENSG00000187555.16" ; ID "USP7--CARHSP1^USP7^ENSG00000187555.16" ; ccdsid "CCDS32385.1" ; exon_id "ENSE00001413420.2" ; exon_number 1 ; gene_id "USP7--CARHSP1^USP7^ENSG00000187555.16" ; gene_name USP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176903.7" ; havana_transcript "OTTHUMT00000434268.3" ; hgnc_id "HGNC:12630" ; level 2 ; orig_coord_info "chr16,8963207,8963285,-" ; protein_id "ENSP00000343535.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP7--CARHSP1^ENST00000344836.9" ; transcript_name "USP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP7--CARHSP1 HAVANA mRNA 2844 34902 . + . FI_gene_label "USP7^ENSG00000187555.16" ; ID "USP7--CARHSP1^ENST00000344836.9" ; Parent "USP7--CARHSP1^USP7^ENSG00000187555.16" ; ccdsid "CCDS32385.1" ; exon_id "ENSE00001413420.2" ; exon_number 1 ; gene_id "USP7--CARHSP1^USP7^ENSG00000187555.16" ; gene_name USP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176903.7" ; havana_transcript "OTTHUMT00000434268.3" ; hgnc_id "HGNC:12630" ; level 2 ; orig_coord_info "chr16,8963207,8963285,-" ; protein_id "ENSP00000343535.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP7--CARHSP1^ENST00000344836.9" ; transcript_name "USP7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WDR82--TLR9 HAVANA gene 3253 15077 . + . FI_gene_label "WDR82^ENSG00000164091.12" ; ID "WDR82--TLR9^WDR82^ENSG00000164091.12" ; ccdsid "CCDS2851.2" ; exon_id "ENSE00001498298.3" ; exon_number 1 ; gene_id "WDR82--TLR9^WDR82^ENSG00000164091.12" ; gene_name WDR82 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150391.4" ; havana_transcript "OTTHUMT00000317919.2" ; hgnc_id "HGNC:28826" ; level 2 ; orig_coord_info "chr3,52278201,52278361,-" ; protein_id "ENSP00000296490.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WDR82--TLR9^ENST00000296490.8" ; transcript_name "WDR82-201" ; transcript_support_level 1 ; transcript_type protein_coding
WDR82--TLR9 HAVANA mRNA 3253 15077 . + . FI_gene_label "WDR82^ENSG00000164091.12" ; ID "WDR82--TLR9^ENST00000296490.8" ; Parent "WDR82--TLR9^WDR82^ENSG00000164091.12" ; ccdsid "CCDS2851.2" ; exon_id "ENSE00001498298.3" ; exon_number 1 ; gene_id "WDR82--TLR9^WDR82^ENSG00000164091.12" ; gene_name WDR82 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150391.4" ; havana_transcript "OTTHUMT00000317919.2" ; hgnc_id "HGNC:28826" ; level 2 ; orig_coord_info "chr3,52278201,52278361,-" ; protein_id "ENSP00000296490.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WDR82--TLR9^ENST00000296490.8" ; transcript_name "WDR82-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WDR82--TLR9 HAVANA gene 18078 22429 . + . FI_gene_label "TLR9^ENSG00000239732.4" ; ID "WDR82--TLR9^TLR9^ENSG00000239732.4" ; ccdsid "CCDS2848.1" ; exon_id "ENSE00001415425.2" ; exon_number 1 ; gene_id "WDR82--TLR9^TLR9^ENSG00000239732.4" ; gene_name TLR9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158106.1" ; havana_transcript "OTTHUMT00000350203.1" ; hgnc_id "HGNC:15633" ; level 2 ; orig_coord_info "chr3,52225527,52225529,-" ; protein_id "ENSP00000353874.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WDR82--TLR9^ENST00000360658.3" ; transcript_name "TLR9-201" ; transcript_support_level 1 ; transcript_type protein_coding
WDR82--TLR9 HAVANA mRNA 18078 22429 . + . FI_gene_label "TLR9^ENSG00000239732.4" ; ID "WDR82--TLR9^ENST00000360658.3" ; Parent "WDR82--TLR9^TLR9^ENSG00000239732.4" ; ccdsid "CCDS2848.1" ; exon_id "ENSE00001415425.2" ; exon_number 1 ; gene_id "WDR82--TLR9^TLR9^ENSG00000239732.4" ; gene_name TLR9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158106.1" ; havana_transcript "OTTHUMT00000350203.1" ; hgnc_id "HGNC:15633" ; level 2 ; orig_coord_info "chr3,52225527,52225529,-" ; protein_id "ENSP00000353874.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WDR82--TLR9^ENST00000360658.3" ; transcript_name "TLR9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC114324.2--GUSBP7 HAVANA gene 2383 2516 . + . FI_gene_label "AC114324.2^ENSG00000249444.2" ; ID "AC114324.2--GUSBP7^AC114324.2^ENSG00000249444.2" ; exon_id "ENSE00002068103.2" ; exon_number 1 ; gene_id "AC114324.2--GUSBP7^AC114324.2^ENSG00000249444.2" ; gene_name "AC114324.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000162760.3" ; havana_transcript "OTTHUMT00000370344.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr5,99499070,99499203,+" ; tag basic ; transcript_id "AC114324.2--GUSBP7^ENST00000503812.2" ; transcript_name "AC114324.2-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AC114324.2--GUSBP7 HAVANA RNA 2383 2516 . + . FI_gene_label "AC114324.2^ENSG00000249444.2" ; ID "AC114324.2--GUSBP7^ENST00000503812.2" ; Parent "AC114324.2--GUSBP7^AC114324.2^ENSG00000249444.2" ; exon_id "ENSE00002068103.2" ; exon_number 1 ; gene_id "AC114324.2--GUSBP7^AC114324.2^ENSG00000249444.2" ; gene_name "AC114324.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000162760.3" ; havana_transcript "OTTHUMT00000370344.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr5,99499070,99499203,+" ; tag basic ; transcript_id "AC114324.2--GUSBP7^ENST00000503812.2" ; transcript_name "AC114324.2-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC114324.2--GUSBP7 HAVANA gene 5681 8712 . + . FI_gene_label "GUSBP7^ENSG00000274455.1" ; ID "AC114324.2--GUSBP7^GUSBP7^ENSG00000274455.1" ; exon_id "ENSE00002245489.2" ; exon_number 1 ; gene_id "AC114324.2--GUSBP7^GUSBP7^ENSG00000274455.1" ; gene_name GUSBP7 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187592.1" ; havana_transcript "OTTHUMT00000475330.1" ; hgnc_id "HGNC:42321" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr5,100067767,100067954,-" ; tag pseudo_consens basic ; transcript_id "AC114324.2--GUSBP7^ENST00000621951.1" ; transcript_name "GUSBP7-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AC114324.2--GUSBP7 HAVANA RNA 5681 8712 . + . FI_gene_label "GUSBP7^ENSG00000274455.1" ; ID "AC114324.2--GUSBP7^ENST00000621951.1" ; Parent "AC114324.2--GUSBP7^GUSBP7^ENSG00000274455.1" ; exon_id "ENSE00002245489.2" ; exon_number 1 ; gene_id "AC114324.2--GUSBP7^GUSBP7^ENSG00000274455.1" ; gene_name GUSBP7 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187592.1" ; havana_transcript "OTTHUMT00000475330.1" ; hgnc_id "HGNC:42321" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr5,100067767,100067954,-" ; tag pseudo_consens basic ; transcript_id "AC114324.2--GUSBP7^ENST00000621951.1" ; transcript_name "GUSBP7-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
DDX10--AP003049.2 HAVANA gene 36338 40152 . + . FI_gene_label "AP003049.2^ENSG00000255028.5" ; ID "DDX10--AP003049.2^AP003049.2^ENSG00000255028.5" ; exon_id "ENSE00002155456.1" ; exon_number 1 ; gene_id "DDX10--AP003049.2^AP003049.2^ENSG00000255028.5" ; gene_name "AP003049.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166558.1" ; havana_transcript "OTTHUMT00000390402.1" ; level 1 ; orig_coord_info "chr11,109583527,109583643,-" ; tag basic exp_conf ; transcript_id "DDX10--AP003049.2^ENST00000532929.1" ; transcript_name "AP003049.2-202" ; transcript_support_level 3 ; transcript_type lncRNA
DDX10--AP003049.2 HAVANA RNA 36338 40152 . + . FI_gene_label "AP003049.2^ENSG00000255028.5" ; ID "DDX10--AP003049.2^ENST00000532929.1" ; Parent "DDX10--AP003049.2^AP003049.2^ENSG00000255028.5" ; exon_id "ENSE00002155456.1" ; exon_number 1 ; gene_id "DDX10--AP003049.2^AP003049.2^ENSG00000255028.5" ; gene_name "AP003049.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166558.1" ; havana_transcript "OTTHUMT00000390402.1" ; level 1 ; orig_coord_info "chr11,109583527,109583643,-" ; tag basic exp_conf ; transcript_id "DDX10--AP003049.2^ENST00000532929.1" ; transcript_name "AP003049.2-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
DDX10--SNORD39 ENSEMBL gene 36074 36152 . + . FI_gene_label "SNORD39^ENSG00000263723.1" ; ID "DDX10--SNORD39^SNORD39^ENSG00000263723.1" ; exon_id "ENSE00002707958.1" ; exon_number 1 ; gene_id "DDX10--SNORD39^SNORD39^ENSG00000263723.1" ; gene_name SNORD39 ; gene_type snoRNA ; level 3 ; orig_coord_info "chr2,237869904,237869982,+" ; tag basic ; transcript_id "DDX10--SNORD39^ENST00000579216.1" ; transcript_name "SNORD39.1-201" ; transcript_support_level NA ; transcript_type snoRNA
DDX10--SNORD39 ENSEMBL RNA 36074 36152 . + . FI_gene_label "SNORD39^ENSG00000263723.1" ; ID "DDX10--SNORD39^ENST00000579216.1" ; Parent "DDX10--SNORD39^SNORD39^ENSG00000263723.1" ; exon_id "ENSE00002707958.1" ; exon_number 1 ; gene_id "DDX10--SNORD39^SNORD39^ENSG00000263723.1" ; gene_name SNORD39 ; gene_type snoRNA ; level 3 ; orig_coord_info "chr2,237869904,237869982,+" ; tag basic ; transcript_id "DDX10--SNORD39^ENST00000579216.1" ; transcript_name "SNORD39.1-201" ; transcript_support_level NA ; transcript_type snoRNA
L1 and L2 created:
EIF4ENIF1--LINC01399 HAVANA gene 28094 32743 . + . FI_gene_label "LINC01399^ENSG00000233080.3" ; ID "EIF4ENIF1--LINC01399^LINC01399^ENSG00000233080.3" ; exon_id "ENSE00001615526.1" ; exon_number 1 ; gene_id "EIF4ENIF1--LINC01399^LINC01399^ENSG00000233080.3" ; gene_name LINC01399 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000155624.2" ; havana_transcript "OTTHUMT00000493689.1" ; hgnc_id "HGNC:50680" ; level 2 ; orig_coord_info "chr22,35230998,35231056,-" ; tag basic ; transcript_id "EIF4ENIF1--LINC01399^ENST00000423311.1" ; transcript_name "LINC01399-201" ; transcript_support_level 3 ; transcript_type processed_transcript
EIF4ENIF1--LINC01399 HAVANA RNA 28094 32743 . + . FI_gene_label "LINC01399^ENSG00000233080.3" ; ID "EIF4ENIF1--LINC01399^ENST00000423311.1" ; Parent "EIF4ENIF1--LINC01399^LINC01399^ENSG00000233080.3" ; exon_id "ENSE00001615526.1" ; exon_number 1 ; gene_id "EIF4ENIF1--LINC01399^LINC01399^ENSG00000233080.3" ; gene_name LINC01399 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000155624.2" ; havana_transcript "OTTHUMT00000493689.1" ; hgnc_id "HGNC:50680" ; level 2 ; orig_coord_info "chr22,35230998,35231056,-" ; tag basic ; transcript_id "EIF4ENIF1--LINC01399^ENST00000423311.1" ; transcript_name "LINC01399-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
GNA13--AC061992.2 HAVANA gene 15289 16778 . + . FI_gene_label "AC061992.2^ENSG00000266970.1" ; ID "GNA13--AC061992.2^AC061992.2^ENSG00000266970.1" ; exon_id "ENSE00002739170.1" ; exon_number 1 ; gene_id "GNA13--AC061992.2^AC061992.2^ENSG00000266970.1" ; gene_name "AC061992.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177663.1" ; havana_transcript "OTTHUMT00000438294.1" ; level 2 ; orig_coord_info "chr17,78362671,78362751,+" ; tag basic ; transcript_id "GNA13--AC061992.2^ENST00000587575.1" ; transcript_name "AC061992.2-202" ; transcript_support_level 3 ; transcript_type lncRNA
GNA13--AC061992.2 HAVANA RNA 15289 16778 . + . FI_gene_label "AC061992.2^ENSG00000266970.1" ; ID "GNA13--AC061992.2^ENST00000587575.1" ; Parent "GNA13--AC061992.2^AC061992.2^ENSG00000266970.1" ; exon_id "ENSE00002739170.1" ; exon_number 1 ; gene_id "GNA13--AC061992.2^AC061992.2^ENSG00000266970.1" ; gene_name "AC061992.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177663.1" ; havana_transcript "OTTHUMT00000438294.1" ; level 2 ; orig_coord_info "chr17,78362671,78362751,+" ; tag basic ; transcript_id "GNA13--AC061992.2^ENST00000587575.1" ; transcript_name "AC061992.2-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
KAT7--AC090615.1 HAVANA gene 29589 30957 . + . FI_gene_label "AC090615.1^ENSG00000266356.1" ; ID "KAT7--AC090615.1^AC090615.1^ENSG00000266356.1" ; exon_id "ENSE00002707913.1" ; exon_number 1 ; gene_id "KAT7--AC090615.1^AC090615.1^ENSG00000266356.1" ; gene_name "AC090615.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000179155.1" ; havana_transcript "OTTHUMT00000445015.1" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr17,27412706,27412806,-" ; tag pseudo_consens basic ; transcript_id "KAT7--AC090615.1^ENST00000577519.1" ; transcript_name "AC090615.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
KAT7--AC090615.1 HAVANA RNA 29589 30957 . + . FI_gene_label "AC090615.1^ENSG00000266356.1" ; ID "KAT7--AC090615.1^ENST00000577519.1" ; Parent "KAT7--AC090615.1^AC090615.1^ENSG00000266356.1" ; exon_id "ENSE00002707913.1" ; exon_number 1 ; gene_id "KAT7--AC090615.1^AC090615.1^ENSG00000266356.1" ; gene_name "AC090615.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000179155.1" ; havana_transcript "OTTHUMT00000445015.1" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr17,27412706,27412806,-" ; tag pseudo_consens basic ; transcript_id "KAT7--AC090615.1^ENST00000577519.1" ; transcript_name "AC090615.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
KAT7--TBC1D3P5 HAVANA gene 31437 41070 . + . FI_gene_label "TBC1D3P5^ENSG00000266433.6" ; ID "KAT7--TBC1D3P5^TBC1D3P5^ENSG00000266433.6" ; exon_id "ENSE00002690400.1" ; exon_number 1 ; gene_id "KAT7--TBC1D3P5^TBC1D3P5^ENSG00000266433.6" ; gene_name TBC1D3P5 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000179156.2" ; havana_transcript "OTTHUMT00000445017.1" ; hgnc_id "HGNC:43567" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,27419538,27419607,+" ; tag basic ; transcript_id "KAT7--TBC1D3P5^ENST00000579401.1" ; transcript_name "TBC1D3P5-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
KAT7--TBC1D3P5 HAVANA RNA 31437 41070 . + . FI_gene_label "TBC1D3P5^ENSG00000266433.6" ; ID "KAT7--TBC1D3P5^ENST00000579401.1" ; Parent "KAT7--TBC1D3P5^TBC1D3P5^ENSG00000266433.6" ; exon_id "ENSE00002690400.1" ; exon_number 1 ; gene_id "KAT7--TBC1D3P5^TBC1D3P5^ENSG00000266433.6" ; gene_name TBC1D3P5 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000179156.2" ; havana_transcript "OTTHUMT00000445017.1" ; hgnc_id "HGNC:43567" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,27419538,27419607,+" ; tag basic ; transcript_id "KAT7--TBC1D3P5^ENST00000579401.1" ; transcript_name "TBC1D3P5-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
KHDC4--AC246785.3 HAVANA gene 18677 19756 . + . FI_gene_label "AC246785.3^ENSG00000237343.1" ; ID "KHDC4--AC246785.3^AC246785.3^ENSG00000237343.1" ; exon_id "ENSE00001654385.1" ; exon_number 1 ; gene_id "KHDC4--AC246785.3^AC246785.3^ENSG00000237343.1" ; gene_name "AC246785.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000040699.1" ; havana_transcript "OTTHUMT00000097804.1" ; level 2 ; orig_coord_info "chr1,144419137,144419192,-" ; tag basic ; transcript_id "KHDC4--AC246785.3^ENST00000455105.1" ; transcript_name "AC246785.3-201" ; transcript_support_level 5 ; transcript_type lncRNA
KHDC4--AC246785.3 HAVANA RNA 18677 19756 . + . FI_gene_label "AC246785.3^ENSG00000237343.1" ; ID "KHDC4--AC246785.3^ENST00000455105.1" ; Parent "KHDC4--AC246785.3^AC246785.3^ENSG00000237343.1" ; exon_id "ENSE00001654385.1" ; exon_number 1 ; gene_id "KHDC4--AC246785.3^AC246785.3^ENSG00000237343.1" ; gene_name "AC246785.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000040699.1" ; havana_transcript "OTTHUMT00000097804.1" ; level 2 ; orig_coord_info "chr1,144419137,144419192,-" ; tag basic ; transcript_id "KHDC4--AC246785.3^ENST00000455105.1" ; transcript_name "AC246785.3-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
KHDC4--AC253572.1 HAVANA gene 18677 19988 . + . FI_gene_label "AC253572.1^ENSG00000287979.1" ; ID "KHDC4--AC253572.1^AC253572.1^ENSG00000287979.1" ; exon_id "ENSE00003857834.1" ; exon_number 1 ; gene_id "KHDC4--AC253572.1^AC253572.1^ENSG00000287979.1" ; gene_name "AC253572.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194126.1" ; havana_transcript "OTTHUMT00000511484.1" ; level 2 ; orig_coord_info "chr1,120849674,120850985,-" ; tag basic TAGENE ; transcript_id "KHDC4--AC253572.1^ENST00000664186.1" ; transcript_name "AC253572.1-201" ; transcript_type lncRNA
KHDC4--AC253572.1 HAVANA RNA 18677 19988 . + . FI_gene_label "AC253572.1^ENSG00000287979.1" ; ID "KHDC4--AC253572.1^ENST00000664186.1" ; Parent "KHDC4--AC253572.1^AC253572.1^ENSG00000287979.1" ; exon_id "ENSE00003857834.1" ; exon_number 1 ; gene_id "KHDC4--AC253572.1^AC253572.1^ENSG00000287979.1" ; gene_name "AC253572.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194126.1" ; havana_transcript "OTTHUMT00000511484.1" ; level 2 ; orig_coord_info "chr1,120849674,120850985,-" ; tag basic TAGENE ; transcript_id "KHDC4--AC253572.1^ENST00000664186.1" ; transcript_name "AC253572.1-201" ; transcript_type lncRNA
L1 and L2 created:
LINC02594--SPAG9 HAVANA gene 1001 4306 . + . FI_gene_label "LINC02594^ENSG00000267440.2" ; ID "LINC02594--SPAG9^LINC02594^ENSG00000267440.2" ; exon_id "ENSE00003885370.1" ; exon_number 1 ; gene_id "LINC02594--SPAG9^LINC02594^ENSG00000267440.2" ; gene_name LINC02594 ; gene_type lncRNA ; havana_gene "OTTHUMG00000180886.2" ; havana_transcript "OTTHUMT00000453500.2" ; hgnc_id "HGNC:53935" ; level 2 ; orig_coord_info "chr17,43679341,43679435,+" ; tag basic TAGENE ; transcript_id "LINC02594--SPAG9^ENST00000593169.2" ; transcript_name "LINC02594-201" ; transcript_support_level 4 ; transcript_type lncRNA
LINC02594--SPAG9 HAVANA RNA 1001 4306 . + . FI_gene_label "LINC02594^ENSG00000267440.2" ; ID "LINC02594--SPAG9^ENST00000593169.2" ; Parent "LINC02594--SPAG9^LINC02594^ENSG00000267440.2" ; exon_id "ENSE00003885370.1" ; exon_number 1 ; gene_id "LINC02594--SPAG9^LINC02594^ENSG00000267440.2" ; gene_name LINC02594 ; gene_type lncRNA ; havana_gene "OTTHUMG00000180886.2" ; havana_transcript "OTTHUMT00000453500.2" ; hgnc_id "HGNC:53935" ; level 2 ; orig_coord_info "chr17,43679341,43679435,+" ; tag basic TAGENE ; transcript_id "LINC02594--SPAG9^ENST00000593169.2" ; transcript_name "LINC02594-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
MAP3K7--AC090017.1 HAVANA gene 25609 27387 . + . FI_gene_label "AC090017.1^ENSG00000257308.1" ; ID "MAP3K7--AC090017.1^AC090017.1^ENSG00000257308.1" ; exon_id "ENSE00002376259.1" ; exon_number 1 ; gene_id "MAP3K7--AC090017.1^AC090017.1^ENSG00000257308.1" ; gene_name "AC090017.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000169972.1" ; havana_transcript "OTTHUMT00000406725.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr12,61231159,61232937,-" ; tag basic ; transcript_id "MAP3K7--AC090017.1^ENST00000548612.1" ; transcript_name "AC090017.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
MAP3K7--AC090017.1 HAVANA RNA 25609 27387 . + . FI_gene_label "AC090017.1^ENSG00000257308.1" ; ID "MAP3K7--AC090017.1^ENST00000548612.1" ; Parent "MAP3K7--AC090017.1^AC090017.1^ENSG00000257308.1" ; exon_id "ENSE00002376259.1" ; exon_number 1 ; gene_id "MAP3K7--AC090017.1^AC090017.1^ENSG00000257308.1" ; gene_name "AC090017.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000169972.1" ; havana_transcript "OTTHUMT00000406725.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr12,61231159,61232937,-" ; tag basic ; transcript_id "MAP3K7--AC090017.1^ENST00000548612.1" ; transcript_name "AC090017.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
MAP3K7--AC090022.2 HAVANA gene 25609 25919 . + . FI_gene_label "AC090022.2^ENSG00000257865.1" ; ID "MAP3K7--AC090022.2^AC090022.2^ENSG00000257865.1" ; exon_id "ENSE00002361399.1" ; exon_number 1 ; gene_id "MAP3K7--AC090022.2^AC090022.2^ENSG00000257865.1" ; gene_name "AC090022.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000169928.1" ; havana_transcript "OTTHUMT00000406595.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,60418983,60419293,+" ; tag pseudo_consens basic ; transcript_id "MAP3K7--AC090022.2^ENST00000546569.1" ; transcript_name "AC090022.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
MAP3K7--AC090022.2 HAVANA RNA 25609 25919 . + . FI_gene_label "AC090022.2^ENSG00000257865.1" ; ID "MAP3K7--AC090022.2^ENST00000546569.1" ; Parent "MAP3K7--AC090022.2^AC090022.2^ENSG00000257865.1" ; exon_id "ENSE00002361399.1" ; exon_number 1 ; gene_id "MAP3K7--AC090022.2^AC090022.2^ENSG00000257865.1" ; gene_name "AC090022.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000169928.1" ; havana_transcript "OTTHUMT00000406595.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,60418983,60419293,+" ; tag pseudo_consens basic ; transcript_id "MAP3K7--AC090022.2^ENST00000546569.1" ; transcript_name "AC090022.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NPLOC4--AMZ2P1 HAVANA gene 34740 40133 . + . FI_gene_label "AMZ2P1^ENSG00000214174.8" ; ID "NPLOC4--AMZ2P1^AMZ2P1^ENSG00000214174.8" ; exon_id "ENSE00001529829.1" ; exon_number 1 ; gene_id "NPLOC4--AMZ2P1^AMZ2P1^ENSG00000214174.8" ; gene_name AMZ2P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000132075.3" ; havana_transcript "OTTHUMT00000255101.1" ; hgnc_id "HGNC:26491" ; level 2 ; orig_coord_info "chr17,64974555,64975576,-" ; tag basic ; transcript_id "NPLOC4--AMZ2P1^ENST00000397713.5" ; transcript_name "AMZ2P1-201" ; transcript_support_level 1 ; transcript_type processed_transcript
NPLOC4--AMZ2P1 HAVANA RNA 34740 40133 . + . FI_gene_label "AMZ2P1^ENSG00000214174.8" ; ID "NPLOC4--AMZ2P1^ENST00000397713.5" ; Parent "NPLOC4--AMZ2P1^AMZ2P1^ENSG00000214174.8" ; exon_id "ENSE00001529829.1" ; exon_number 1 ; gene_id "NPLOC4--AMZ2P1^AMZ2P1^ENSG00000214174.8" ; gene_name AMZ2P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000132075.3" ; havana_transcript "OTTHUMT00000255101.1" ; hgnc_id "HGNC:26491" ; level 2 ; orig_coord_info "chr17,64974555,64975576,-" ; tag basic ; transcript_id "NPLOC4--AMZ2P1^ENST00000397713.5" ; transcript_name "AMZ2P1-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
RNF213--LINC02594 HAVANA gene 81147 84452 . + . FI_gene_label "LINC02594^ENSG00000267440.2" ; ID "RNF213--LINC02594^LINC02594^ENSG00000267440.2" ; exon_id "ENSE00003885370.1" ; exon_number 1 ; gene_id "RNF213--LINC02594^LINC02594^ENSG00000267440.2" ; gene_name LINC02594 ; gene_type lncRNA ; havana_gene "OTTHUMG00000180886.2" ; havana_transcript "OTTHUMT00000453500.2" ; hgnc_id "HGNC:53935" ; level 2 ; orig_coord_info "chr17,43679341,43679435,+" ; tag basic TAGENE ; transcript_id "RNF213--LINC02594^ENST00000593169.2" ; transcript_name "LINC02594-201" ; transcript_support_level 4 ; transcript_type lncRNA
RNF213--LINC02594 HAVANA RNA 81147 84452 . + . FI_gene_label "LINC02594^ENSG00000267440.2" ; ID "RNF213--LINC02594^ENST00000593169.2" ; Parent "RNF213--LINC02594^LINC02594^ENSG00000267440.2" ; exon_id "ENSE00003885370.1" ; exon_number 1 ; gene_id "RNF213--LINC02594^LINC02594^ENSG00000267440.2" ; gene_name LINC02594 ; gene_type lncRNA ; havana_gene "OTTHUMG00000180886.2" ; havana_transcript "OTTHUMT00000453500.2" ; hgnc_id "HGNC:53935" ; level 2 ; orig_coord_info "chr17,43679341,43679435,+" ; tag basic TAGENE ; transcript_id "RNF213--LINC02594^ENST00000593169.2" ; transcript_name "LINC02594-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
S100PBP--FP236383.3 HAVANA gene 25191 31786 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "S100PBP--FP236383.3^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "S100PBP--FP236383.3^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "S100PBP--FP236383.3^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
S100PBP--FP236383.3 HAVANA RNA 25191 31786 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "S100PBP--FP236383.3^ENST00000623860.3" ; Parent "S100PBP--FP236383.3^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "S100PBP--FP236383.3^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "S100PBP--FP236383.3^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
SPECC1L--LINC00683 HAVANA gene 28920 36645 . + . FI_gene_label "LINC00683^ENSG00000266256.3" ; ID "SPECC1L--LINC00683^LINC00683^ENSG00000266256.3" ; exon_id "ENSE00002689266.1" ; exon_number 1 ; gene_id "SPECC1L--LINC00683^LINC00683^ENSG00000266256.3" ; gene_name LINC00683 ; gene_type lncRNA ; havana_gene "OTTHUMG00000179141.27" ; havana_transcript "OTTHUMT00000444935.1" ; hgnc_id "HGNC:44467" ; level 1 ; orig_coord_info "chr18,76528655,76528963,+" ; tag exp_conf ; transcript_id "SPECC1L--LINC00683^ENST00000578092.5" ; transcript_name "LINC00683-201" ; transcript_support_level 4 ; transcript_type lncRNA
SPECC1L--LINC00683 HAVANA RNA 28920 36645 . + . FI_gene_label "LINC00683^ENSG00000266256.3" ; ID "SPECC1L--LINC00683^ENST00000578092.5" ; Parent "SPECC1L--LINC00683^LINC00683^ENSG00000266256.3" ; exon_id "ENSE00002689266.1" ; exon_number 1 ; gene_id "SPECC1L--LINC00683^LINC00683^ENSG00000266256.3" ; gene_name LINC00683 ; gene_type lncRNA ; havana_gene "OTTHUMG00000179141.27" ; havana_transcript "OTTHUMT00000444935.1" ; hgnc_id "HGNC:44467" ; level 1 ; orig_coord_info "chr18,76528655,76528963,+" ; tag exp_conf ; transcript_id "SPECC1L--LINC00683^ENST00000578092.5" ; transcript_name "LINC00683-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
968 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1673 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 1 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 60 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed