#!/bin/bash -euo pipefail
FusionInspector \
--fusions 659_bGc-T1-TRNA-1_B23MHV2LT4_1.fusionreport.tsv \
--genome_lib ctat_genome_lib_build_dir \
--left_fq 659_bGc-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz --right_fq 659_bGc-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz \
--CPU 8 \
-O . \
--out_prefix 659_bGc-T1-TRNA-1_B23MHV2LT4_1 \
--vis --annotate --examine_coding_effect
cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR":
STAR-Fusion: $(STAR-Fusion --version 2>&1 | grep -i 'version' | sed 's/STAR-Fusion version: //')
END_VERSIONS