Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/3243ec3aa229936f9d97ea86dae11b/659_bCu-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/b4feb23bfea7d1a9902986cef2f722/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/b4feb23bfea7d1a9902986cef2f722/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/e4b6bb64305bfbe210bc6de3e33c24/659_bCu-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 212861861
[W::hts_idx_load3] The index file is older than the data file: 659_bCu-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	212861861
Known Splicing Events:	210809282
Partial Novel Splicing Events:	1241902
Novel Splicing Events:	723582
Filtered Splicing Events:	87095

Total splicing  Junctions:	346509
Known Splicing Junctions:	224005
Partial Novel Splicing Junctions:	73592
Novel Splicing Junctions:	48912

===================================================================
Create BED file ...
Create Interact file ...