File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/1a0c331f35208e7e3385fce5b682e7/.command.log
Size
7.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bjQ-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/1a0c331f35208e7e3385fce5b682e7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/78598a44d171d2f49a12fff6820fa3/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/f4245fde408a73364b9b9b7bbf7e16/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/1a0c331f35208e7e3385fce5b682e7/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
KIF5B--RET
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
arriba
PTPN2--NPIPB12
starfusion
CCDC198--NPIPB12
starfusion
TAF4--AC114498.1
starfusion
arriba
AC025884.2--IGH-@-ext
starfusion
GUSBP13--NAIP
starfusion
AC091132.4--AC091132.1
starfusion
MCM3AP--MTRNR2L12
starfusion
STX16--NPEPL1
starfusion
arriba
RPSAP52--HMGA2
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
TVP23C--CDRT4
arriba
ABCC4--RNY4P27
arriba
ABCC4--MEMO1P5
arriba
NOLC1--GBF1
arriba
AC015911.9--SLFN12L
arriba
AC092807.3--DDAH1
arriba
KLRC4--KLRK1
arriba
GLI3--AF246928.1
arriba
GLI3--AJ009632.2
arriba
RITA1--GLT8D2
arriba
TLK2--FAM157A
arriba
GTF2A1L--STON1-GTF2A1L
arriba

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Processing KIF5B--RET:   0%|          | 0/34 [00:00<?, ?it/s]
Processing KIF5B--RET:   3%|▎         | 1/34 [00:00<00:03,  9.25it/s]
Processing TLK2--AC240565.1:   3%|▎         | 1/34 [00:00<00:03,  9.25it/s]
Processing TLK2--AC240565.1:   6%|▌         | 2/34 [00:00<00:03,  9.48it/s]
Processing TLK2P1--AC110079.1:   6%|▌         | 2/34 [00:00<00:03,  9.48it/s]
Processing TLK2P1--AC110079.1:   9%|▉         | 3/34 [00:00<00:03,  9.56it/s]
Processing PTPN2--NPIPB12:   9%|▉         | 3/34 [00:00<00:03,  9.56it/s]    
Processing PTPN2--NPIPB12:  12%|█▏        | 4/34 [00:00<00:03,  9.59it/s]
Processing CCDC198--NPIPB12:  12%|█▏        | 4/34 [00:00<00:03,  9.59it/s]
Processing CCDC198--NPIPB12:  15%|█▍        | 5/34 [00:00<00:03,  9.61it/s]
Processing TAF4--AC114498.1:  15%|█▍        | 5/34 [00:00<00:03,  9.61it/s]
Processing TAF4--AC114498.1:  18%|█▊        | 6/34 [00:00<00:02,  9.63it/s]
Processing AC025884.2--IGH-@-ext:  18%|█▊        | 6/34 [00:00<00:02,  9.63it/s]
Processing AC025884.2--IGH-@-ext:  21%|██        | 7/34 [00:00<00:02,  9.64it/s]
Processing GUSBP13--NAIP:  21%|██        | 7/34 [00:00<00:02,  9.64it/s]        
Processing GUSBP13--NAIP:  24%|██▎       | 8/34 [00:00<00:02,  9.64it/s]
Processing AC091132.4--AC091132.1:  24%|██▎       | 8/34 [00:00<00:02,  9.64it/s]
Processing AC091132.4--AC091132.1:  26%|██▋       | 9/34 [00:00<00:02,  9.64it/s]
Processing MCM3AP--MTRNR2L12:  26%|██▋       | 9/34 [00:00<00:02,  9.64it/s]     
Processing MCM3AP--MTRNR2L12:  29%|██▉       | 10/34 [00:01<00:02,  9.65it/s]
Processing STX16--NPEPL1:  29%|██▉       | 10/34 [00:01<00:02,  9.65it/s]    
Processing STX16--NPEPL1:  32%|███▏      | 11/34 [00:01<00:02,  9.65it/s]
Processing RPSAP52--HMGA2:  32%|███▏      | 11/34 [00:01<00:02,  9.65it/s]
Processing RPSAP52--HMGA2:  35%|███▌      | 12/34 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  35%|███▌      | 12/34 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  38%|███▊      | 13/34 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  38%|███▊      | 13/34 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  41%|████      | 14/34 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  41%|████      | 14/34 [00:01<00:02,  9.65it/s] 
Processing PCDHGB2--PCDHGC5:  44%|████▍     | 15/34 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  44%|████▍     | 15/34 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  47%|████▋     | 16/34 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  47%|████▋     | 16/34 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  50%|█████     | 17/34 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  50%|█████     | 17/34 [00:01<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGC4:  53%|█████▎    | 18/34 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  53%|█████▎    | 18/34 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  56%|█████▌    | 19/34 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  56%|█████▌    | 19/34 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  59%|█████▉    | 20/34 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  59%|█████▉    | 20/34 [00:02<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGA9:  62%|██████▏   | 21/34 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  62%|██████▏   | 21/34 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  65%|██████▍   | 22/34 [00:02<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  65%|██████▍   | 22/34 [00:02<00:01,  9.65it/s]   
Processing TVP23C--CDRT4:  68%|██████▊   | 23/34 [00:02<00:01,  9.66it/s]
Processing ABCC4--RNY4P27:  68%|██████▊   | 23/34 [00:02<00:01,  9.66it/s]
Processing ABCC4--RNY4P27:  71%|███████   | 24/34 [00:02<00:01,  9.66it/s]
Processing ABCC4--MEMO1P5:  71%|███████   | 24/34 [00:02<00:01,  9.66it/s]
Processing ABCC4--MEMO1P5:  74%|███████▎  | 25/34 [00:02<00:00,  9.65it/s]
Processing NOLC1--GBF1:  74%|███████▎  | 25/34 [00:02<00:00,  9.65it/s]   
Processing NOLC1--GBF1:  76%|███████▋  | 26/34 [00:02<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  76%|███████▋  | 26/34 [00:02<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  79%|███████▉  | 27/34 [00:02<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  79%|███████▉  | 27/34 [00:02<00:00,  9.65it/s]  
Processing AC092807.3--DDAH1:  82%|████████▏ | 28/34 [00:02<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  82%|████████▏ | 28/34 [00:02<00:00,  9.65it/s]     
Processing KLRC4--KLRK1:  85%|████████▌ | 29/34 [00:03<00:00,  9.65it/s]
Processing GLI3--AF246928.1:  85%|████████▌ | 29/34 [00:03<00:00,  9.65it/s]
Processing GLI3--AF246928.1:  88%|████████▊ | 30/34 [00:03<00:00,  9.65it/s]
Processing GLI3--AJ009632.2:  88%|████████▊ | 30/34 [00:03<00:00,  9.65it/s]
Processing GLI3--AJ009632.2:  91%|█████████ | 31/34 [00:03<00:00,  9.65it/s]
Processing RITA1--GLT8D2:  91%|█████████ | 31/34 [00:03<00:00,  9.65it/s]   
Processing RITA1--GLT8D2:  94%|█████████▍| 32/34 [00:03<00:00,  9.65it/s]
Processing TLK2--FAM157A:  94%|█████████▍| 32/34 [00:03<00:00,  9.65it/s]
Processing TLK2--FAM157A:  97%|█████████▋| 33/34 [00:03<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L:  97%|█████████▋| 33/34 [00:03<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 34/34 [00:03<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 34/34 [00:03<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory