File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/0f97f21fb53321a049ad5326994eb5/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 15 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 243
  Pass (FILTER=PASS): 16 (6.6%)
  Fail (FILTER=FAIL): 227 (93.4%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 15
  All 15 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 60
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 30
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 29
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 16
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 11
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 10
  confidence_below_min(low<high): 9
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 8
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 7
  confidence_below_min(medium<high);aih_curated_blacklist: 7
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 7
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 5
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 4
  total_reads_below_min(3.0<8.0): 3

Breakdown by confidence:
  high: 16 pass, 7 fail (total: 23)
  low: 0 pass, 97 fail (total: 97)
  medium: 0 pass, 123 fail (total: 123)
Arriba filter: 243 rows -> 16 PASS; wrote 659_cVw-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered.tsv and 659_cVw-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_cVw-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filter_summary.txt