Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/bf9d5023d1dbda636e538cae24b759/659_bhK-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/4e412f4ab3eb66757c322b5f45df1c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/4e412f4ab3eb66757c322b5f45df1c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/5f0b4e94c40683ce2acca17a73c04d/659_bhK-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 358339020
[W::hts_idx_load3] The index file is older than the data file: 659_bhK-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	358339020
Known Splicing Events:	355480936
Partial Novel Splicing Events:	1299610
Novel Splicing Events:	1469345
Filtered Splicing Events:	89129

Total splicing  Junctions:	576565
Known Splicing Junctions:	281454
Partial Novel Splicing Junctions:	162491
Novel Splicing Junctions:	132620

===================================================================
Create BED file ...
Create Interact file ...