Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/343f663539b695113a2456e280402c/fi_workdir/659_Fr-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/91dd72960b348e6341760b9f35794a/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/91dd72960b348e6341760b9f35794a/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 13144
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 13144
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:13144
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC004918.3--ULK4 HAVANA gene 4953 49975 . + . FI_gene_label "ULK4^ENSG00000168038.11" ; ID "AC004918.3--ULK4^ULK4^ENSG00000168038.11" ; ccdsid "CCDS43071.1" ; exon_id "ENSE00003538346.1" ; exon_number 2 ; gene_id "AC004918.3--ULK4^ULK4^ENSG00000168038.11" ; gene_name ULK4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156210.4" ; havana_transcript "OTTHUMT00000343490.2" ; hgnc_id "HGNC:15784" ; level 2 ; orig_coord_info "chr3,41954622,41954759,-" ; protein_id "ENSP00000301831.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC004918.3--ULK4^ENST00000301831.9" ; transcript_name "ULK4-201" ; transcript_support_level 2 ; transcript_type protein_coding
AC004918.3--ULK4 HAVANA mRNA 4953 49975 . + . FI_gene_label "ULK4^ENSG00000168038.11" ; ID "AC004918.3--ULK4^ENST00000301831.9" ; Parent "AC004918.3--ULK4^ULK4^ENSG00000168038.11" ; ccdsid "CCDS43071.1" ; exon_id "ENSE00003538346.1" ; exon_number 2 ; gene_id "AC004918.3--ULK4^ULK4^ENSG00000168038.11" ; gene_name ULK4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156210.4" ; havana_transcript "OTTHUMT00000343490.2" ; hgnc_id "HGNC:15784" ; level 2 ; orig_coord_info "chr3,41954622,41954759,-" ; protein_id "ENSP00000301831.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC004918.3--ULK4^ENST00000301831.9" ; transcript_name "ULK4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACP3--ETV1 ENSEMBL gene 18518 43582 . + . FI_gene_label "ETV1^ENSG00000006468.14" ; ID "ACP3--ETV1^ETV1^ENSG00000006468.14" ; ccdsid "CCDS55086.1" ; exon_id "ENSE00003499933.1" ; exon_number 3 ; gene_id "ACP3--ETV1^ETV1^ENSG00000006468.14" ; gene_name ETV1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152403.7" ; hgnc_id "HGNC:3490" ; level 3 ; orig_coord_info "chr7,13989008,13989052,-" ; protein_id "ENSP00000242066.5" ; tag basic CCDS ; transcript_id "ACP3--ETV1^ENST00000242066.9" ; transcript_name "ETV1-201" ; transcript_support_level 5 ; transcript_type protein_coding
ACP3--ETV1 ENSEMBL mRNA 18518 43582 . + . FI_gene_label "ETV1^ENSG00000006468.14" ; ID "ACP3--ETV1^ENST00000242066.9" ; Parent "ACP3--ETV1^ETV1^ENSG00000006468.14" ; ccdsid "CCDS55086.1" ; exon_id "ENSE00003499933.1" ; exon_number 3 ; gene_id "ACP3--ETV1^ETV1^ENSG00000006468.14" ; gene_name ETV1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152403.7" ; hgnc_id "HGNC:3490" ; level 3 ; orig_coord_info "chr7,13989008,13989052,-" ; protein_id "ENSP00000242066.5" ; tag basic CCDS ; transcript_id "ACP3--ETV1^ENST00000242066.9" ; transcript_name "ETV1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ACP3--ETV1 HAVANA gene 1039 13922 . + . FI_gene_label "ACP3^ENSG00000014257.16" ; ID "ACP3--ETV1^ACP3^ENSG00000014257.16" ; ccdsid "CCDS3073.1" ; exon_id "ENSE00001922674.1" ; exon_number 1 ; gene_id "ACP3--ETV1^ACP3^ENSG00000014257.16" ; gene_name ACP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159650.6" ; havana_transcript "OTTHUMT00000356699.3" ; hgnc_id "HGNC:125" ; level 2 ; orig_coord_info "chr3,132317457,132317576,+" ; protein_id "ENSP00000337471.5" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ACP3--ETV1^ENST00000336375.10" ; transcript_name "ACP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACP3--ETV1 HAVANA mRNA 1039 13922 . + . FI_gene_label "ACP3^ENSG00000014257.16" ; ID "ACP3--ETV1^ENST00000336375.10" ; Parent "ACP3--ETV1^ACP3^ENSG00000014257.16" ; ccdsid "CCDS3073.1" ; exon_id "ENSE00001922674.1" ; exon_number 1 ; gene_id "ACP3--ETV1^ACP3^ENSG00000014257.16" ; gene_name ACP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159650.6" ; havana_transcript "OTTHUMT00000356699.3" ; hgnc_id "HGNC:125" ; level 2 ; orig_coord_info "chr3,132317457,132317576,+" ; protein_id "ENSP00000337471.5" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ACP3--ETV1^ENST00000336375.10" ; transcript_name "ACP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL611929.1--AFDN HAVANA gene 5489 40390 . + . FI_gene_label "AFDN^ENSG00000130396.20" ; ID "AL611929.1--AFDN^AFDN^ENSG00000130396.20" ; exon_id "ENSE00002039523.1" ; exon_number 1 ; gene_id "AL611929.1--AFDN^AFDN^ENSG00000130396.20" ; gene_name AFDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000016031.9" ; havana_transcript "OTTHUMT00000043149.2" ; hgnc_id "HGNC:7137" ; level 2 ; orig_coord_info "chr6,167827133,167827237,+" ; protein_id "ENSP00000341118.4" ; tag not_organism_supported basic ; transcript_id "AL611929.1--AFDN^ENST00000344191.8" ; transcript_name "AFDN-201" ; transcript_support_level 5 ; transcript_type protein_coding
AL611929.1--AFDN HAVANA mRNA 5489 40390 . + . FI_gene_label "AFDN^ENSG00000130396.20" ; ID "AL611929.1--AFDN^ENST00000344191.8" ; Parent "AL611929.1--AFDN^AFDN^ENSG00000130396.20" ; exon_id "ENSE00002039523.1" ; exon_number 1 ; gene_id "AL611929.1--AFDN^AFDN^ENSG00000130396.20" ; gene_name AFDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000016031.9" ; havana_transcript "OTTHUMT00000043149.2" ; hgnc_id "HGNC:7137" ; level 2 ; orig_coord_info "chr6,167827133,167827237,+" ; protein_id "ENSP00000341118.4" ; tag not_organism_supported basic ; transcript_id "AL611929.1--AFDN^ENST00000344191.8" ; transcript_name "AFDN-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ATF6--AP000977.1 HAVANA gene 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--AP000977.1^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--AP000977.1^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--AP000977.1^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATF6--AP000977.1 HAVANA mRNA 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--AP000977.1^ENST00000367942.4" ; Parent "ATF6--AP000977.1^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--AP000977.1^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--AP000977.1^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATF6--AP002365.1 HAVANA gene 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--AP002365.1^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--AP002365.1^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--AP002365.1^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATF6--AP002365.1 HAVANA mRNA 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--AP002365.1^ENST00000367942.4" ; Parent "ATF6--AP002365.1^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--AP002365.1^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--AP002365.1^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATF6--SORL1 HAVANA gene 38823 99595 . + . FI_gene_label "SORL1^ENSG00000137642.13" ; ID "ATF6--SORL1^SORL1^ENSG00000137642.13" ; ccdsid "CCDS8436.1" ; exon_id "ENSE00001134458.11" ; exon_number 1 ; gene_id "ATF6--SORL1^SORL1^ENSG00000137642.13" ; gene_name SORL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166057.4" ; havana_transcript "OTTHUMT00000387626.4" ; hgnc_id "HGNC:11185" ; level 2 ; orig_coord_info "chr11,121452332,121452616,+" ; protein_id "ENSP00000260197.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATF6--SORL1^ENST00000260197.12" ; transcript_name "SORL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATF6--SORL1 HAVANA mRNA 38823 99595 . + . FI_gene_label "SORL1^ENSG00000137642.13" ; ID "ATF6--SORL1^ENST00000260197.12" ; Parent "ATF6--SORL1^SORL1^ENSG00000137642.13" ; ccdsid "CCDS8436.1" ; exon_id "ENSE00001134458.11" ; exon_number 1 ; gene_id "ATF6--SORL1^SORL1^ENSG00000137642.13" ; gene_name SORL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166057.4" ; havana_transcript "OTTHUMT00000387626.4" ; hgnc_id "HGNC:11185" ; level 2 ; orig_coord_info "chr11,121452332,121452616,+" ; protein_id "ENSP00000260197.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATF6--SORL1^ENST00000260197.12" ; transcript_name "SORL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATF6--SORL1 HAVANA gene 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--SORL1^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--SORL1^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--SORL1^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATF6--SORL1 HAVANA mRNA 1023 32433 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "ATF6--SORL1^ENST00000367942.4" ; Parent "ATF6--SORL1^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "ATF6--SORL1^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATF6--SORL1^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATG7--PPM1D HAVANA gene 39157 50280 . + . FI_gene_label "PPM1D^ENSG00000170836.12" ; ID "ATG7--PPM1D^PPM1D^ENSG00000170836.12" ; ccdsid "CCDS11625.1" ; exon_id "ENSE00003896583.1" ; exon_number 1 ; gene_id "ATG7--PPM1D^PPM1D^ENSG00000170836.12" ; gene_name PPM1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000180052.4" ; havana_transcript "OTTHUMT00000449474.3" ; hgnc_id "HGNC:9277" ; level 2 ; orig_coord_info "chr17,60600415,60600886,+" ; protein_id "ENSP00000306682.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATG7--PPM1D^ENST00000305921.8" ; transcript_name "PPM1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATG7--PPM1D HAVANA mRNA 39157 50280 . + . FI_gene_label "PPM1D^ENSG00000170836.12" ; ID "ATG7--PPM1D^ENST00000305921.8" ; Parent "ATG7--PPM1D^PPM1D^ENSG00000170836.12" ; ccdsid "CCDS11625.1" ; exon_id "ENSE00003896583.1" ; exon_number 1 ; gene_id "ATG7--PPM1D^PPM1D^ENSG00000170836.12" ; gene_name PPM1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000180052.4" ; havana_transcript "OTTHUMT00000449474.3" ; hgnc_id "HGNC:9277" ; level 2 ; orig_coord_info "chr17,60600415,60600886,+" ; protein_id "ENSP00000306682.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATG7--PPM1D^ENST00000305921.8" ; transcript_name "PPM1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATG7--PPM1D HAVANA gene 1108 36146 . + . FI_gene_label "ATG7^ENSG00000197548.12" ; ID "ATG7--PPM1D^ATG7^ENSG00000197548.12" ; ccdsid "CCDS2605.1" ; exon_id "ENSE00003638636.1" ; exon_number 2 ; gene_id "ATG7--PPM1D^ATG7^ENSG00000197548.12" ; gene_name ATG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129740.21" ; havana_transcript "OTTHUMT00000251951.3" ; hgnc_id "HGNC:16935" ; level 2 ; orig_coord_info "chr3,11298696,11298855,+" ; protein_id "ENSP00000346437.3" ; tag basic appris_principal_1 CCDS ; transcript_id "ATG7--PPM1D^ENST00000354449.7" ; transcript_name "ATG7-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATG7--PPM1D HAVANA mRNA 1108 36146 . + . FI_gene_label "ATG7^ENSG00000197548.12" ; ID "ATG7--PPM1D^ENST00000354449.7" ; Parent "ATG7--PPM1D^ATG7^ENSG00000197548.12" ; ccdsid "CCDS2605.1" ; exon_id "ENSE00003638636.1" ; exon_number 2 ; gene_id "ATG7--PPM1D^ATG7^ENSG00000197548.12" ; gene_name ATG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129740.21" ; havana_transcript "OTTHUMT00000251951.3" ; hgnc_id "HGNC:16935" ; level 2 ; orig_coord_info "chr3,11298696,11298855,+" ; protein_id "ENSP00000346437.3" ; tag basic appris_principal_1 CCDS ; transcript_id "ATG7--PPM1D^ENST00000354449.7" ; transcript_name "ATG7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BLOC1S5--CDH12P1 HAVANA gene 1004 11245 . + . FI_gene_label "BLOC1S5^ENSG00000188428.20" ; ID "BLOC1S5--CDH12P1^BLOC1S5^ENSG00000188428.20" ; exon_id "ENSE00001918879.1" ; exon_number 1 ; gene_id "BLOC1S5--CDH12P1^BLOC1S5^ENSG00000188428.20" ; gene_name BLOC1S5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014220.6" ; havana_transcript "OTTHUMT00000348954.1" ; hgnc_id "HGNC:18561" ; level 2 ; orig_coord_info "chr6,8064265,8064376,-" ; protein_id "ENSP00000244777.2" ; transcript_id "BLOC1S5--CDH12P1^ENST00000244777.6" ; transcript_name "BLOC1S5-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
BLOC1S5--CDH12P1 HAVANA mRNA 1004 11245 . + . FI_gene_label "BLOC1S5^ENSG00000188428.20" ; ID "BLOC1S5--CDH12P1^ENST00000244777.6" ; Parent "BLOC1S5--CDH12P1^BLOC1S5^ENSG00000188428.20" ; exon_id "ENSE00001918879.1" ; exon_number 1 ; gene_id "BLOC1S5--CDH12P1^BLOC1S5^ENSG00000188428.20" ; gene_name BLOC1S5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014220.6" ; havana_transcript "OTTHUMT00000348954.1" ; hgnc_id "HGNC:18561" ; level 2 ; orig_coord_info "chr6,8064265,8064376,-" ; protein_id "ENSP00000244777.2" ; transcript_id "BLOC1S5--CDH12P1^ENST00000244777.6" ; transcript_name "BLOC1S5-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
BLOC1S5--GUSBP16 HAVANA gene 1004 11245 . + . FI_gene_label "BLOC1S5^ENSG00000188428.20" ; ID "BLOC1S5--GUSBP16^BLOC1S5^ENSG00000188428.20" ; exon_id "ENSE00001918879.1" ; exon_number 1 ; gene_id "BLOC1S5--GUSBP16^BLOC1S5^ENSG00000188428.20" ; gene_name BLOC1S5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014220.6" ; havana_transcript "OTTHUMT00000348954.1" ; hgnc_id "HGNC:18561" ; level 2 ; orig_coord_info "chr6,8064265,8064376,-" ; protein_id "ENSP00000244777.2" ; transcript_id "BLOC1S5--GUSBP16^ENST00000244777.6" ; transcript_name "BLOC1S5-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
BLOC1S5--GUSBP16 HAVANA mRNA 1004 11245 . + . FI_gene_label "BLOC1S5^ENSG00000188428.20" ; ID "BLOC1S5--GUSBP16^ENST00000244777.6" ; Parent "BLOC1S5--GUSBP16^BLOC1S5^ENSG00000188428.20" ; exon_id "ENSE00001918879.1" ; exon_number 1 ; gene_id "BLOC1S5--GUSBP16^BLOC1S5^ENSG00000188428.20" ; gene_name BLOC1S5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014220.6" ; havana_transcript "OTTHUMT00000348954.1" ; hgnc_id "HGNC:18561" ; level 2 ; orig_coord_info "chr6,8064265,8064376,-" ; protein_id "ENSP00000244777.2" ; transcript_id "BLOC1S5--GUSBP16^ENST00000244777.6" ; transcript_name "BLOC1S5-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
COP1--PRDX6-AS1 HAVANA gene 1309 25254 . + . FI_gene_label "COP1^ENSG00000143207.21" ; ID "COP1--PRDX6-AS1^COP1^ENSG00000143207.21" ; ccdsid "CCDS44279.1" ; exon_id "ENSE00002179931.1" ; exon_number 1 ; gene_id "COP1--PRDX6-AS1^COP1^ENSG00000143207.21" ; gene_name COP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034986.7" ; havana_transcript "OTTHUMT00000393314.2" ; hgnc_id "HGNC:17440" ; level 2 ; orig_coord_info "chr1,176206572,176206978,-" ; protein_id "ENSP00000310943.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "COP1--PRDX6-AS1^ENST00000308769.12" ; transcript_name "COP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
COP1--PRDX6-AS1 HAVANA mRNA 1309 25254 . + . FI_gene_label "COP1^ENSG00000143207.21" ; ID "COP1--PRDX6-AS1^ENST00000308769.12" ; Parent "COP1--PRDX6-AS1^COP1^ENSG00000143207.21" ; ccdsid "CCDS44279.1" ; exon_id "ENSE00002179931.1" ; exon_number 1 ; gene_id "COP1--PRDX6-AS1^COP1^ENSG00000143207.21" ; gene_name COP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034986.7" ; havana_transcript "OTTHUMT00000393314.2" ; hgnc_id "HGNC:17440" ; level 2 ; orig_coord_info "chr1,176206572,176206978,-" ; protein_id "ENSP00000310943.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "COP1--PRDX6-AS1^ENST00000308769.12" ; transcript_name "COP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DCAF1--SEC61A1 HAVANA gene 31444 42833 . + . FI_gene_label "SEC61A1^ENSG00000058262.10" ; ID "DCAF1--SEC61A1^SEC61A1^ENSG00000058262.10" ; ccdsid "CCDS3046.1" ; exon_id "ENSE00001374740.2" ; exon_number 1 ; gene_id "DCAF1--SEC61A1^SEC61A1^ENSG00000058262.10" ; gene_name SEC61A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159624.5" ; havana_transcript "OTTHUMT00000356541.3" ; hgnc_id "HGNC:18276" ; level 2 ; orig_coord_info "chr3,128052553,128052559,+" ; protein_id "ENSP00000243253.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DCAF1--SEC61A1^ENST00000243253.8" ; transcript_name "SEC61A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
DCAF1--SEC61A1 HAVANA mRNA 31444 42833 . + . FI_gene_label "SEC61A1^ENSG00000058262.10" ; ID "DCAF1--SEC61A1^ENST00000243253.8" ; Parent "DCAF1--SEC61A1^SEC61A1^ENSG00000058262.10" ; ccdsid "CCDS3046.1" ; exon_id "ENSE00001374740.2" ; exon_number 1 ; gene_id "DCAF1--SEC61A1^SEC61A1^ENSG00000058262.10" ; gene_name SEC61A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159624.5" ; havana_transcript "OTTHUMT00000356541.3" ; hgnc_id "HGNC:18276" ; level 2 ; orig_coord_info "chr3,128052553,128052559,+" ; protein_id "ENSP00000243253.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DCAF1--SEC61A1^ENST00000243253.8" ; transcript_name "SEC61A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DCAF1--SEC61A1 ENSEMBL gene 2131 25672 . + . FI_gene_label "DCAF1^ENSG00000145041.15" ; ID "DCAF1--SEC61A1^DCAF1^ENSG00000145041.15" ; exon_id "ENSE00002274753.1" ; exon_number 1 ; gene_id "DCAF1--SEC61A1^DCAF1^ENSG00000145041.15" ; gene_name DCAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156895.4" ; hgnc_id "HGNC:30911" ; level 3 ; orig_coord_info "chr3,51483719,51483828,-" ; protein_id "ENSP00000338857.5" ; tag basic ; transcript_id "DCAF1--SEC61A1^ENST00000335891.5" ; transcript_name "DCAF1-201" ; transcript_support_level 5 ; transcript_type protein_coding
DCAF1--SEC61A1 ENSEMBL mRNA 2131 25672 . + . FI_gene_label "DCAF1^ENSG00000145041.15" ; ID "DCAF1--SEC61A1^ENST00000335891.5" ; Parent "DCAF1--SEC61A1^DCAF1^ENSG00000145041.15" ; exon_id "ENSE00002274753.1" ; exon_number 1 ; gene_id "DCAF1--SEC61A1^DCAF1^ENSG00000145041.15" ; gene_name DCAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156895.4" ; hgnc_id "HGNC:30911" ; level 3 ; orig_coord_info "chr3,51483719,51483828,-" ; protein_id "ENSP00000338857.5" ; tag basic ; transcript_id "DCAF1--SEC61A1^ENST00000335891.5" ; transcript_name "DCAF1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DENND11--ULK4 HAVANA gene 18352 63374 . + . FI_gene_label "ULK4^ENSG00000168038.11" ; ID "DENND11--ULK4^ULK4^ENSG00000168038.11" ; ccdsid "CCDS43071.1" ; exon_id "ENSE00003538346.1" ; exon_number 2 ; gene_id "DENND11--ULK4^ULK4^ENSG00000168038.11" ; gene_name ULK4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156210.4" ; havana_transcript "OTTHUMT00000343490.2" ; hgnc_id "HGNC:15784" ; level 2 ; orig_coord_info "chr3,41954622,41954759,-" ; protein_id "ENSP00000301831.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DENND11--ULK4^ENST00000301831.9" ; transcript_name "ULK4-201" ; transcript_support_level 2 ; transcript_type protein_coding
DENND11--ULK4 HAVANA mRNA 18352 63374 . + . FI_gene_label "ULK4^ENSG00000168038.11" ; ID "DENND11--ULK4^ENST00000301831.9" ; Parent "DENND11--ULK4^ULK4^ENSG00000168038.11" ; ccdsid "CCDS43071.1" ; exon_id "ENSE00003538346.1" ; exon_number 2 ; gene_id "DENND11--ULK4^ULK4^ENSG00000168038.11" ; gene_name ULK4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156210.4" ; havana_transcript "OTTHUMT00000343490.2" ; hgnc_id "HGNC:15784" ; level 2 ; orig_coord_info "chr3,41954622,41954759,-" ; protein_id "ENSP00000301831.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DENND11--ULK4^ENST00000301831.9" ; transcript_name "ULK4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DENND11--ULK4 HAVANA gene 1552 10122 . + . FI_gene_label "DENND11^ENSG00000257093.7" ; ID "DENND11--ULK4^DENND11^ENSG00000257093.7" ; exon_id "ENSE00003578216.1" ; exon_number 2 ; gene_id "DENND11--ULK4^DENND11^ENSG00000257093.7" ; gene_name DENND11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157539.2" ; havana_transcript "OTTHUMT00000349105.1" ; hgnc_id "HGNC:29472" ; level 2 ; orig_coord_info "chr7,141686559,141686653,-" ; protein_id "ENSP00000418236.1" ; tag not_organism_supported basic ; transcript_id "DENND11--ULK4^ENST00000482493.1" ; transcript_name "DENND11-201" ; transcript_support_level 5 ; transcript_type protein_coding
DENND11--ULK4 HAVANA mRNA 1552 10122 . + . FI_gene_label "DENND11^ENSG00000257093.7" ; ID "DENND11--ULK4^ENST00000482493.1" ; Parent "DENND11--ULK4^DENND11^ENSG00000257093.7" ; exon_id "ENSE00003578216.1" ; exon_number 2 ; gene_id "DENND11--ULK4^DENND11^ENSG00000257093.7" ; gene_name DENND11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157539.2" ; havana_transcript "OTTHUMT00000349105.1" ; hgnc_id "HGNC:29472" ; level 2 ; orig_coord_info "chr7,141686559,141686653,-" ; protein_id "ENSP00000418236.1" ; tag not_organism_supported basic ; transcript_id "DENND11--ULK4^ENST00000482493.1" ; transcript_name "DENND11-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ELL2--AC114316.1 HAVANA gene 1001 18381 . + . FI_gene_label "ELL2^ENSG00000118985.16" ; ID "ELL2--AC114316.1^ELL2^ENSG00000118985.16" ; ccdsid "CCDS4080.1" ; exon_id "ENSE00001250185.6" ; exon_number 1 ; gene_id "ELL2--AC114316.1^ELL2^ENSG00000118985.16" ; gene_name ELL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000122085.5" ; havana_transcript "OTTHUMT00000242846.2" ; hgnc_id "HGNC:17064" ; level 2 ; orig_coord_info "chr5,95961575,95961721,-" ; protein_id "ENSP00000237853.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ELL2--AC114316.1^ENST00000237853.9" ; transcript_name "ELL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ELL2--AC114316.1 HAVANA mRNA 1001 18381 . + . FI_gene_label "ELL2^ENSG00000118985.16" ; ID "ELL2--AC114316.1^ENST00000237853.9" ; Parent "ELL2--AC114316.1^ELL2^ENSG00000118985.16" ; ccdsid "CCDS4080.1" ; exon_id "ENSE00001250185.6" ; exon_number 1 ; gene_id "ELL2--AC114316.1^ELL2^ENSG00000118985.16" ; gene_name ELL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000122085.5" ; havana_transcript "OTTHUMT00000242846.2" ; hgnc_id "HGNC:17064" ; level 2 ; orig_coord_info "chr5,95961575,95961721,-" ; protein_id "ENSP00000237853.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ELL2--AC114316.1^ENST00000237853.9" ; transcript_name "ELL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ELL2--PCBP2P3 HAVANA gene 1001 18381 . + . FI_gene_label "ELL2^ENSG00000118985.16" ; ID "ELL2--PCBP2P3^ELL2^ENSG00000118985.16" ; ccdsid "CCDS4080.1" ; exon_id "ENSE00001250185.6" ; exon_number 1 ; gene_id "ELL2--PCBP2P3^ELL2^ENSG00000118985.16" ; gene_name ELL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000122085.5" ; havana_transcript "OTTHUMT00000242846.2" ; hgnc_id "HGNC:17064" ; level 2 ; orig_coord_info "chr5,95961575,95961721,-" ; protein_id "ENSP00000237853.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ELL2--PCBP2P3^ENST00000237853.9" ; transcript_name "ELL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ELL2--PCBP2P3 HAVANA mRNA 1001 18381 . + . FI_gene_label "ELL2^ENSG00000118985.16" ; ID "ELL2--PCBP2P3^ENST00000237853.9" ; Parent "ELL2--PCBP2P3^ELL2^ENSG00000118985.16" ; ccdsid "CCDS4080.1" ; exon_id "ENSE00001250185.6" ; exon_number 1 ; gene_id "ELL2--PCBP2P3^ELL2^ENSG00000118985.16" ; gene_name ELL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000122085.5" ; havana_transcript "OTTHUMT00000242846.2" ; hgnc_id "HGNC:17064" ; level 2 ; orig_coord_info "chr5,95961575,95961721,-" ; protein_id "ENSP00000237853.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ELL2--PCBP2P3^ENST00000237853.9" ; transcript_name "ELL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ENTPD7--EYA1 HAVANA gene 37861 58687 . + . FI_gene_label "EYA1^ENSG00000104313.20" ; ID "ENTPD7--EYA1^EYA1^ENSG00000104313.20" ; ccdsid "CCDS75750.1" ; exon_id "ENSE00003521318.1" ; exon_number 3 ; gene_id "ENTPD7--EYA1^EYA1^ENSG00000104313.20" ; gene_name EYA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149894.17" ; havana_transcript "OTTHUMT00000313891.2" ; hgnc_id "HGNC:3519" ; level 2 ; orig_coord_info "chr8,71354782,71354905,-" ; protein_id "ENSP00000303221.7" ; tag NAGNAG_splice_site not_organism_supported basic appris_alternative_1 CCDS ; transcript_id "ENTPD7--EYA1^ENST00000303824.11" ; transcript_name "EYA1-201" ; transcript_support_level 2 ; transcript_type protein_coding
ENTPD7--EYA1 HAVANA mRNA 37861 58687 . + . FI_gene_label "EYA1^ENSG00000104313.20" ; ID "ENTPD7--EYA1^ENST00000303824.11" ; Parent "ENTPD7--EYA1^EYA1^ENSG00000104313.20" ; ccdsid "CCDS75750.1" ; exon_id "ENSE00003521318.1" ; exon_number 3 ; gene_id "ENTPD7--EYA1^EYA1^ENSG00000104313.20" ; gene_name EYA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149894.17" ; havana_transcript "OTTHUMT00000313891.2" ; hgnc_id "HGNC:3519" ; level 2 ; orig_coord_info "chr8,71354782,71354905,-" ; protein_id "ENSP00000303221.7" ; tag NAGNAG_splice_site not_organism_supported basic appris_alternative_1 CCDS ; transcript_id "ENTPD7--EYA1^ENST00000303824.11" ; transcript_name "EYA1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ENTPD7--EYA1 HAVANA gene 1001 20186 . + . FI_gene_label "ENTPD7^ENSG00000198018.7" ; ID "ENTPD7--EYA1^ENTPD7^ENSG00000198018.7" ; ccdsid "CCDS7480.1" ; exon_id "ENSE00001452859.1" ; exon_number 2 ; gene_id "ENTPD7--EYA1^ENTPD7^ENSG00000198018.7" ; gene_name ENTPD7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018888.4" ; havana_transcript "OTTHUMT00000049809.3" ; hgnc_id "HGNC:19745" ; level 2 ; orig_coord_info "chr10,99659957,99659964,+" ; protein_id "ENSP00000359520.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ENTPD7--EYA1^ENST00000370489.5" ; transcript_name "ENTPD7-201" ; transcript_support_level 1 ; transcript_type protein_coding
ENTPD7--EYA1 HAVANA mRNA 1001 20186 . + . FI_gene_label "ENTPD7^ENSG00000198018.7" ; ID "ENTPD7--EYA1^ENST00000370489.5" ; Parent "ENTPD7--EYA1^ENTPD7^ENSG00000198018.7" ; ccdsid "CCDS7480.1" ; exon_id "ENSE00001452859.1" ; exon_number 2 ; gene_id "ENTPD7--EYA1^ENTPD7^ENSG00000198018.7" ; gene_name ENTPD7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018888.4" ; havana_transcript "OTTHUMT00000049809.3" ; hgnc_id "HGNC:19745" ; level 2 ; orig_coord_info "chr10,99659957,99659964,+" ; protein_id "ENSP00000359520.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ENTPD7--EYA1^ENST00000370489.5" ; transcript_name "ENTPD7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERO1A--TXNDC16 HAVANA gene 23515 46869 . + . FI_gene_label "TXNDC16^ENSG00000087301.9" ; ID "ERO1A--TXNDC16^TXNDC16^ENSG00000087301.9" ; ccdsid "CCDS32083.1" ; exon_id "ENSE00001194890.1" ; exon_number 3 ; gene_id "ERO1A--TXNDC16^TXNDC16^ENSG00000087301.9" ; gene_name TXNDC16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171103.4" ; havana_transcript "OTTHUMT00000411681.2" ; hgnc_id "HGNC:19965" ; level 2 ; orig_coord_info "chr14,52543398,52543557,-" ; protein_id "ENSP00000281741.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERO1A--TXNDC16^ENST00000281741.9" ; transcript_name "TXNDC16-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERO1A--TXNDC16 HAVANA mRNA 23515 46869 . + . FI_gene_label "TXNDC16^ENSG00000087301.9" ; ID "ERO1A--TXNDC16^ENST00000281741.9" ; Parent "ERO1A--TXNDC16^TXNDC16^ENSG00000087301.9" ; ccdsid "CCDS32083.1" ; exon_id "ENSE00001194890.1" ; exon_number 3 ; gene_id "ERO1A--TXNDC16^TXNDC16^ENSG00000087301.9" ; gene_name TXNDC16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171103.4" ; havana_transcript "OTTHUMT00000411681.2" ; hgnc_id "HGNC:19965" ; level 2 ; orig_coord_info "chr14,52543398,52543557,-" ; protein_id "ENSP00000281741.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERO1A--TXNDC16^ENST00000281741.9" ; transcript_name "TXNDC16-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERO1A--TXNDC16 HAVANA gene 1343 20497 . + . FI_gene_label "ERO1A^ENSG00000197930.13" ; ID "ERO1A--TXNDC16^ERO1A^ENSG00000197930.13" ; ccdsid "CCDS9709.1" ; exon_id "ENSE00003849768.1" ; exon_number 1 ; gene_id "ERO1A--TXNDC16^ERO1A^ENSG00000197930.13" ; gene_name ERO1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000140301.4" ; havana_transcript "OTTHUMT00000276892.2" ; hgnc_id "HGNC:13280" ; level 2 ; orig_coord_info "chr14,52695368,52695481,-" ; protein_id "ENSP00000379042.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERO1A--TXNDC16^ENST00000395686.8" ; transcript_name "ERO1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERO1A--TXNDC16 HAVANA mRNA 1343 20497 . + . FI_gene_label "ERO1A^ENSG00000197930.13" ; ID "ERO1A--TXNDC16^ENST00000395686.8" ; Parent "ERO1A--TXNDC16^ERO1A^ENSG00000197930.13" ; ccdsid "CCDS9709.1" ; exon_id "ENSE00003849768.1" ; exon_number 1 ; gene_id "ERO1A--TXNDC16^ERO1A^ENSG00000197930.13" ; gene_name ERO1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000140301.4" ; havana_transcript "OTTHUMT00000276892.2" ; hgnc_id "HGNC:13280" ; level 2 ; orig_coord_info "chr14,52695368,52695481,-" ; protein_id "ENSP00000379042.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERO1A--TXNDC16^ENST00000395686.8" ; transcript_name "ERO1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FRMD1--AFDN HAVANA gene 4668 18260 . + . FI_gene_label "FRMD1^ENSG00000153303.17" ; ID "FRMD1--AFDN^FRMD1^ENSG00000153303.17" ; ccdsid "CCDS5306.1" ; exon_id "ENSE00001355851.1" ; exon_number 1 ; gene_id "FRMD1--AFDN^FRMD1^ENSG00000153303.17" ; gene_name FRMD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016037.9" ; havana_transcript "OTTHUMT00000362513.2" ; hgnc_id "HGNC:21240" ; level 2 ; orig_coord_info "chr6,168078882,168079094,-" ; protein_id "ENSP00000283309.6" ; tag basic CCDS ; transcript_id "FRMD1--AFDN^ENST00000283309.10" ; transcript_name "FRMD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FRMD1--AFDN HAVANA mRNA 4668 18260 . + . FI_gene_label "FRMD1^ENSG00000153303.17" ; ID "FRMD1--AFDN^ENST00000283309.10" ; Parent "FRMD1--AFDN^FRMD1^ENSG00000153303.17" ; ccdsid "CCDS5306.1" ; exon_id "ENSE00001355851.1" ; exon_number 1 ; gene_id "FRMD1--AFDN^FRMD1^ENSG00000153303.17" ; gene_name FRMD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016037.9" ; havana_transcript "OTTHUMT00000362513.2" ; hgnc_id "HGNC:21240" ; level 2 ; orig_coord_info "chr6,168078882,168079094,-" ; protein_id "ENSP00000283309.6" ; tag basic CCDS ; transcript_id "FRMD1--AFDN^ENST00000283309.10" ; transcript_name "FRMD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FRMD1--AFDN HAVANA gene 23879 58780 . + . FI_gene_label "AFDN^ENSG00000130396.20" ; ID "FRMD1--AFDN^AFDN^ENSG00000130396.20" ; exon_id "ENSE00002039523.1" ; exon_number 1 ; gene_id "FRMD1--AFDN^AFDN^ENSG00000130396.20" ; gene_name AFDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000016031.9" ; havana_transcript "OTTHUMT00000043149.2" ; hgnc_id "HGNC:7137" ; level 2 ; orig_coord_info "chr6,167827133,167827237,+" ; protein_id "ENSP00000341118.4" ; tag not_organism_supported basic ; transcript_id "FRMD1--AFDN^ENST00000344191.8" ; transcript_name "AFDN-201" ; transcript_support_level 5 ; transcript_type protein_coding
FRMD1--AFDN HAVANA mRNA 23879 58780 . + . FI_gene_label "AFDN^ENSG00000130396.20" ; ID "FRMD1--AFDN^ENST00000344191.8" ; Parent "FRMD1--AFDN^AFDN^ENSG00000130396.20" ; exon_id "ENSE00002039523.1" ; exon_number 1 ; gene_id "FRMD1--AFDN^AFDN^ENSG00000130396.20" ; gene_name AFDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000016031.9" ; havana_transcript "OTTHUMT00000043149.2" ; hgnc_id "HGNC:7137" ; level 2 ; orig_coord_info "chr6,167827133,167827237,+" ; protein_id "ENSP00000341118.4" ; tag not_organism_supported basic ; transcript_id "FRMD1--AFDN^ENST00000344191.8" ; transcript_name "AFDN-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GALNT17--AUTS2 HAVANA gene 1001 18133 . + . FI_gene_label "GALNT17^ENSG00000185274.12" ; ID "GALNT17--AUTS2^GALNT17^ENSG00000185274.12" ; ccdsid "CCDS5540.1" ; exon_id "ENSE00001705539.2" ; exon_number 1 ; gene_id "GALNT17--AUTS2^GALNT17^ENSG00000185274.12" ; gene_name GALNT17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129783.5" ; havana_transcript "OTTHUMT00000252006.2" ; hgnc_id "HGNC:16347" ; level 2 ; orig_coord_info "chr7,71132803,71133040,+" ; protein_id "ENSP00000329654.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GALNT17--AUTS2^ENST00000333538.10" ; transcript_name "GALNT17-201" ; transcript_support_level 1 ; transcript_type protein_coding
GALNT17--AUTS2 HAVANA mRNA 1001 18133 . + . FI_gene_label "GALNT17^ENSG00000185274.12" ; ID "GALNT17--AUTS2^ENST00000333538.10" ; Parent "GALNT17--AUTS2^GALNT17^ENSG00000185274.12" ; ccdsid "CCDS5540.1" ; exon_id "ENSE00001705539.2" ; exon_number 1 ; gene_id "GALNT17--AUTS2^GALNT17^ENSG00000185274.12" ; gene_name GALNT17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129783.5" ; havana_transcript "OTTHUMT00000252006.2" ; hgnc_id "HGNC:16347" ; level 2 ; orig_coord_info "chr7,71132803,71133040,+" ; protein_id "ENSP00000329654.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GALNT17--AUTS2^ENST00000333538.10" ; transcript_name "GALNT17-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GALNT17--AUTS2 HAVANA gene 21314 76383 . + . FI_gene_label "AUTS2^ENSG00000158321.18" ; ID "GALNT17--AUTS2^AUTS2^ENSG00000158321.18" ; ccdsid "CCDS5539.1" ; exon_id "ENSE00001662974.2" ; exon_number 1 ; gene_id "GALNT17--AUTS2^AUTS2^ENSG00000158321.18" ; gene_name AUTS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023865.12" ; havana_transcript "OTTHUMT00000251971.5" ; hgnc_id "HGNC:14262" ; level 2 ; orig_coord_info "chr7,69599654,69599962,+" ; protein_id "ENSP00000344087.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "GALNT17--AUTS2^ENST00000342771.10" ; transcript_name "AUTS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GALNT17--AUTS2 HAVANA mRNA 21314 76383 . + . FI_gene_label "AUTS2^ENSG00000158321.18" ; ID "GALNT17--AUTS2^ENST00000342771.10" ; Parent "GALNT17--AUTS2^AUTS2^ENSG00000158321.18" ; ccdsid "CCDS5539.1" ; exon_id "ENSE00001662974.2" ; exon_number 1 ; gene_id "GALNT17--AUTS2^AUTS2^ENSG00000158321.18" ; gene_name AUTS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023865.12" ; havana_transcript "OTTHUMT00000251971.5" ; hgnc_id "HGNC:14262" ; level 2 ; orig_coord_info "chr7,69599654,69599962,+" ; protein_id "ENSP00000344087.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "GALNT17--AUTS2^ENST00000342771.10" ; transcript_name "AUTS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IRS2--CYFIP1 HAVANA gene 1001 10156 . + . FI_gene_label "IRS2^ENSG00000185950.9" ; ID "IRS2--CYFIP1^IRS2^ENSG00000185950.9" ; ccdsid "CCDS9510.1" ; exon_id "ENSE00001468589.4" ; exon_number 1 ; gene_id "IRS2--CYFIP1^IRS2^ENSG00000185950.9" ; gene_name IRS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017338.3" ; havana_transcript "OTTHUMT00000045755.3" ; hgnc_id "HGNC:6126" ; level 2 ; orig_coord_info "chr13,109782042,109786053,-" ; protein_id "ENSP00000365016.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IRS2--CYFIP1^ENST00000375856.5" ; transcript_name "IRS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
IRS2--CYFIP1 HAVANA mRNA 1001 10156 . + . FI_gene_label "IRS2^ENSG00000185950.9" ; ID "IRS2--CYFIP1^ENST00000375856.5" ; Parent "IRS2--CYFIP1^IRS2^ENSG00000185950.9" ; ccdsid "CCDS9510.1" ; exon_id "ENSE00001468589.4" ; exon_number 1 ; gene_id "IRS2--CYFIP1^IRS2^ENSG00000185950.9" ; gene_name IRS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017338.3" ; havana_transcript "OTTHUMT00000045755.3" ; hgnc_id "HGNC:6126" ; level 2 ; orig_coord_info "chr13,109782042,109786053,-" ; protein_id "ENSP00000365016.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IRS2--CYFIP1^ENST00000375856.5" ; transcript_name "IRS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IRS2--CYFIP1 HAVANA gene 42428 45026 . + . FI_gene_label "CYFIP1^ENSG00000273749.5" ; ID "IRS2--CYFIP1^CYFIP1^ENSG00000273749.5" ; exon_id "ENSE00002552700.1" ; exon_number 1 ; gene_id "IRS2--CYFIP1^CYFIP1^ENSG00000273749.5" ; gene_name CYFIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129100.8" ; havana_transcript "OTTHUMT00000415639.2" ; hgnc_id "HGNC:13759" ; level 2 ; orig_coord_info "chr15,22875199,22875235,-" ; protein_id "ENSP00000453060.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "IRS2--CYFIP1^ENST00000561263.2" ; transcript_name "CYFIP1-202" ; transcript_support_level 2 ; transcript_type protein_coding
IRS2--CYFIP1 HAVANA mRNA 42428 45026 . + . FI_gene_label "CYFIP1^ENSG00000273749.5" ; ID "IRS2--CYFIP1^ENST00000561263.2" ; Parent "IRS2--CYFIP1^CYFIP1^ENSG00000273749.5" ; exon_id "ENSE00002552700.1" ; exon_number 1 ; gene_id "IRS2--CYFIP1^CYFIP1^ENSG00000273749.5" ; gene_name CYFIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129100.8" ; havana_transcript "OTTHUMT00000415639.2" ; hgnc_id "HGNC:13759" ; level 2 ; orig_coord_info "chr15,22875199,22875235,-" ; protein_id "ENSP00000453060.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "IRS2--CYFIP1^ENST00000561263.2" ; transcript_name "CYFIP1-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
JMJD6--ERN1 HAVANA gene 1016 7609 . + . FI_gene_label "JMJD6^ENSG00000070495.15" ; ID "JMJD6--ERN1^JMJD6^ENSG00000070495.15" ; exon_id "ENSE00001798701.2" ; exon_number 1 ; gene_id "JMJD6--ERN1^JMJD6^ENSG00000070495.15" ; gene_name JMJD6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169267.3" ; havana_transcript "OTTHUMT00000403210.1" ; hgnc_id "HGNC:19355" ; level 2 ; orig_coord_info "chr17,76726347,76726475,-" ; protein_id "ENSP00000302916.6" ; transcript_id "JMJD6--ERN1^ENST00000303996.10" ; transcript_name "JMJD6-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
JMJD6--ERN1 HAVANA mRNA 1016 7609 . + . FI_gene_label "JMJD6^ENSG00000070495.15" ; ID "JMJD6--ERN1^ENST00000303996.10" ; Parent "JMJD6--ERN1^JMJD6^ENSG00000070495.15" ; exon_id "ENSE00001798701.2" ; exon_number 1 ; gene_id "JMJD6--ERN1^JMJD6^ENSG00000070495.15" ; gene_name JMJD6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169267.3" ; havana_transcript "OTTHUMT00000403210.1" ; hgnc_id "HGNC:19355" ; level 2 ; orig_coord_info "chr17,76726347,76726475,-" ; protein_id "ENSP00000302916.6" ; transcript_id "JMJD6--ERN1^ENST00000303996.10" ; transcript_name "JMJD6-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
JMJD6--ERN1 HAVANA gene 16176 52463 . + . FI_gene_label "ERN1^ENSG00000178607.17" ; ID "JMJD6--ERN1^ERN1^ENSG00000178607.17" ; ccdsid "CCDS45762.1" ; exon_id "ENSE00002695232.2" ; exon_number 1 ; gene_id "JMJD6--ERN1^ERN1^ENSG00000178607.17" ; gene_name ERN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178879.4" ; havana_transcript "OTTHUMT00000443734.3" ; hgnc_id "HGNC:3449" ; level 2 ; orig_coord_info "chr17,64129976,64130029,-" ; protein_id "ENSP00000401445.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "JMJD6--ERN1^ENST00000433197.4" ; transcript_name "ERN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
JMJD6--ERN1 HAVANA mRNA 16176 52463 . + . FI_gene_label "ERN1^ENSG00000178607.17" ; ID "JMJD6--ERN1^ENST00000433197.4" ; Parent "JMJD6--ERN1^ERN1^ENSG00000178607.17" ; ccdsid "CCDS45762.1" ; exon_id "ENSE00002695232.2" ; exon_number 1 ; gene_id "JMJD6--ERN1^ERN1^ENSG00000178607.17" ; gene_name ERN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178879.4" ; havana_transcript "OTTHUMT00000443734.3" ; hgnc_id "HGNC:3449" ; level 2 ; orig_coord_info "chr17,64129976,64130029,-" ; protein_id "ENSP00000401445.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "JMJD6--ERN1^ENST00000433197.4" ; transcript_name "ERN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIAA1671--AC007731.2 ENSEMBL gene 4362 31435 . + . FI_gene_label "KIAA1671^ENSG00000197077.13" ; ID "KIAA1671--AC007731.2^KIAA1671^ENSG00000197077.13" ; ccdsid "CCDS46676.1" ; exon_id "ENSE00001493181.2" ; exon_number 1 ; gene_id "KIAA1671--AC007731.2^KIAA1671^ENSG00000197077.13" ; gene_name KIAA1671 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150841.9" ; hgnc_id "HGNC:29345" ; level 3 ; orig_coord_info "chr22,25028000,25029540,+" ; protein_id "ENSP00000351207.3" ; tag basic appris_principal_2 CCDS ; transcript_id "KIAA1671--AC007731.2^ENST00000358431.7" ; transcript_name "KIAA1671-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIAA1671--AC007731.2 ENSEMBL mRNA 4362 31435 . + . FI_gene_label "KIAA1671^ENSG00000197077.13" ; ID "KIAA1671--AC007731.2^ENST00000358431.7" ; Parent "KIAA1671--AC007731.2^KIAA1671^ENSG00000197077.13" ; ccdsid "CCDS46676.1" ; exon_id "ENSE00001493181.2" ; exon_number 1 ; gene_id "KIAA1671--AC007731.2^KIAA1671^ENSG00000197077.13" ; gene_name KIAA1671 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150841.9" ; hgnc_id "HGNC:29345" ; level 3 ; orig_coord_info "chr22,25028000,25029540,+" ; protein_id "ENSP00000351207.3" ; tag basic appris_principal_2 CCDS ; transcript_id "KIAA1671--AC007731.2^ENST00000358431.7" ; transcript_name "KIAA1671-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIAA1671--FAM230J ENSEMBL gene 4362 31435 . + . FI_gene_label "KIAA1671^ENSG00000197077.13" ; ID "KIAA1671--FAM230J^KIAA1671^ENSG00000197077.13" ; ccdsid "CCDS46676.1" ; exon_id "ENSE00001493181.2" ; exon_number 1 ; gene_id "KIAA1671--FAM230J^KIAA1671^ENSG00000197077.13" ; gene_name KIAA1671 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150841.9" ; hgnc_id "HGNC:29345" ; level 3 ; orig_coord_info "chr22,25028000,25029540,+" ; protein_id "ENSP00000351207.3" ; tag basic appris_principal_2 CCDS ; transcript_id "KIAA1671--FAM230J^ENST00000358431.7" ; transcript_name "KIAA1671-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIAA1671--FAM230J ENSEMBL mRNA 4362 31435 . + . FI_gene_label "KIAA1671^ENSG00000197077.13" ; ID "KIAA1671--FAM230J^ENST00000358431.7" ; Parent "KIAA1671--FAM230J^KIAA1671^ENSG00000197077.13" ; ccdsid "CCDS46676.1" ; exon_id "ENSE00001493181.2" ; exon_number 1 ; gene_id "KIAA1671--FAM230J^KIAA1671^ENSG00000197077.13" ; gene_name KIAA1671 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150841.9" ; hgnc_id "HGNC:29345" ; level 3 ; orig_coord_info "chr22,25028000,25029540,+" ; protein_id "ENSP00000351207.3" ; tag basic appris_principal_2 CCDS ; transcript_id "KIAA1671--FAM230J^ENST00000358431.7" ; transcript_name "KIAA1671-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LAMA3--OSBPL1A HAVANA gene 43318 79984 . + . FI_gene_label "LAMA3^ENSG00000053747.17" ; ID "LAMA3--OSBPL1A^LAMA3^ENSG00000053747.17" ; ccdsid "CCDS11880.1" ; exon_id "ENSE00002824650.2" ; exon_number 1 ; gene_id "LAMA3--OSBPL1A^LAMA3^ENSG00000053747.17" ; gene_name LAMA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131874.11" ; havana_transcript "OTTHUMT00000254850.4" ; hgnc_id "HGNC:6483" ; level 2 ; orig_coord_info "chr18,23873045,23873215,+" ; protein_id "ENSP00000269217.5" ; tag basic MANE_Plus_Clinical CCDS ; transcript_id "LAMA3--OSBPL1A^ENST00000269217.11" ; transcript_name "LAMA3-201" ; transcript_support_level 1 ; transcript_type protein_coding
LAMA3--OSBPL1A HAVANA mRNA 43318 79984 . + . FI_gene_label "LAMA3^ENSG00000053747.17" ; ID "LAMA3--OSBPL1A^ENST00000269217.11" ; Parent "LAMA3--OSBPL1A^LAMA3^ENSG00000053747.17" ; ccdsid "CCDS11880.1" ; exon_id "ENSE00002824650.2" ; exon_number 1 ; gene_id "LAMA3--OSBPL1A^LAMA3^ENSG00000053747.17" ; gene_name LAMA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131874.11" ; havana_transcript "OTTHUMT00000254850.4" ; hgnc_id "HGNC:6483" ; level 2 ; orig_coord_info "chr18,23873045,23873215,+" ; protein_id "ENSP00000269217.5" ; tag basic MANE_Plus_Clinical CCDS ; transcript_id "LAMA3--OSBPL1A^ENST00000269217.11" ; transcript_name "LAMA3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LAMA3--OSBPL1A HAVANA gene 84197 122391 . + . FI_gene_label "OSBPL1A^ENSG00000141447.18" ; ID "LAMA3--OSBPL1A^OSBPL1A^ENSG00000141447.18" ; ccdsid "CCDS11884.1" ; exon_id "ENSE00003636465.1" ; exon_number 2 ; gene_id "LAMA3--OSBPL1A^OSBPL1A^ENSG00000141447.18" ; gene_name OSBPL1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000131944.7" ; havana_transcript "OTTHUMT00000254902.2" ; hgnc_id "HGNC:16398" ; level 2 ; orig_coord_info "chr18,24377413,24377533,-" ; protein_id "ENSP00000320291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LAMA3--OSBPL1A^ENST00000319481.8" ; transcript_name "OSBPL1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
LAMA3--OSBPL1A HAVANA mRNA 84197 122391 . + . FI_gene_label "OSBPL1A^ENSG00000141447.18" ; ID "LAMA3--OSBPL1A^ENST00000319481.8" ; Parent "LAMA3--OSBPL1A^OSBPL1A^ENSG00000141447.18" ; ccdsid "CCDS11884.1" ; exon_id "ENSE00003636465.1" ; exon_number 2 ; gene_id "LAMA3--OSBPL1A^OSBPL1A^ENSG00000141447.18" ; gene_name OSBPL1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000131944.7" ; havana_transcript "OTTHUMT00000254902.2" ; hgnc_id "HGNC:16398" ; level 2 ; orig_coord_info "chr18,24377413,24377533,-" ; protein_id "ENSP00000320291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LAMA3--OSBPL1A^ENST00000319481.8" ; transcript_name "OSBPL1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP2K4--JMJD6 HAVANA gene 22725 29318 . + . FI_gene_label "JMJD6^ENSG00000070495.15" ; ID "MAP2K4--JMJD6^JMJD6^ENSG00000070495.15" ; exon_id "ENSE00001798701.2" ; exon_number 1 ; gene_id "MAP2K4--JMJD6^JMJD6^ENSG00000070495.15" ; gene_name JMJD6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169267.3" ; havana_transcript "OTTHUMT00000403210.1" ; hgnc_id "HGNC:19355" ; level 2 ; orig_coord_info "chr17,76726347,76726475,-" ; protein_id "ENSP00000302916.6" ; transcript_id "MAP2K4--JMJD6^ENST00000303996.10" ; transcript_name "JMJD6-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
MAP2K4--JMJD6 HAVANA mRNA 22725 29318 . + . FI_gene_label "JMJD6^ENSG00000070495.15" ; ID "MAP2K4--JMJD6^ENST00000303996.10" ; Parent "MAP2K4--JMJD6^JMJD6^ENSG00000070495.15" ; exon_id "ENSE00001798701.2" ; exon_number 1 ; gene_id "MAP2K4--JMJD6^JMJD6^ENSG00000070495.15" ; gene_name JMJD6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169267.3" ; havana_transcript "OTTHUMT00000403210.1" ; hgnc_id "HGNC:19355" ; level 2 ; orig_coord_info "chr17,76726347,76726475,-" ; protein_id "ENSP00000302916.6" ; transcript_id "MAP2K4--JMJD6^ENST00000303996.10" ; transcript_name "JMJD6-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
MAP2K4--JMJD6 HAVANA gene 1049 19707 . + . FI_gene_label "MAP2K4^ENSG00000065559.15" ; ID "MAP2K4--JMJD6^MAP2K4^ENSG00000065559.15" ; ccdsid "CCDS11162.1" ; exon_id "ENSE00001385129.5" ; exon_number 1 ; gene_id "MAP2K4--JMJD6^MAP2K4^ENSG00000065559.15" ; gene_name MAP2K4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178267.8" ; havana_transcript "OTTHUMT00000441226.2" ; hgnc_id "HGNC:6844" ; level 2 ; orig_coord_info "chr17,12020887,12021001,+" ; protein_id "ENSP00000262445.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MAP2K4--JMJD6^ENST00000353533.10" ; transcript_name "MAP2K4-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAP2K4--JMJD6 HAVANA mRNA 1049 19707 . + . FI_gene_label "MAP2K4^ENSG00000065559.15" ; ID "MAP2K4--JMJD6^ENST00000353533.10" ; Parent "MAP2K4--JMJD6^MAP2K4^ENSG00000065559.15" ; ccdsid "CCDS11162.1" ; exon_id "ENSE00001385129.5" ; exon_number 1 ; gene_id "MAP2K4--JMJD6^MAP2K4^ENSG00000065559.15" ; gene_name MAP2K4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178267.8" ; havana_transcript "OTTHUMT00000441226.2" ; hgnc_id "HGNC:6844" ; level 2 ; orig_coord_info "chr17,12020887,12021001,+" ; protein_id "ENSP00000262445.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MAP2K4--JMJD6^ENST00000353533.10" ; transcript_name "MAP2K4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MCF2L--AP006261.1 HAVANA gene 48010 57643 . + . FI_gene_label "MCF2L^ENSG00000126217.21" ; ID "MCF2L--AP006261.1^MCF2L^ENSG00000126217.21" ; exon_id "ENSE00001643016.1" ; exon_number 1 ; gene_id "MCF2L--AP006261.1^MCF2L^ENSG00000126217.21" ; gene_name MCF2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000017377.18" ; havana_transcript "OTTHUMT00000339076.1" ; hgnc_id "HGNC:14576" ; level 2 ; orig_coord_info "chr13,113087350,113087456,+" ; protein_id "ENSP00000261963.7" ; tag mRNA_start_NF cds_start_NF ; transcript_id "MCF2L--AP006261.1^ENST00000261963.11" ; transcript_name "MCF2L-201" ; transcript_support_level 1 ; transcript_type protein_coding
MCF2L--AP006261.1 HAVANA mRNA 48010 57643 . + . FI_gene_label "MCF2L^ENSG00000126217.21" ; ID "MCF2L--AP006261.1^ENST00000261963.11" ; Parent "MCF2L--AP006261.1^MCF2L^ENSG00000126217.21" ; exon_id "ENSE00001643016.1" ; exon_number 1 ; gene_id "MCF2L--AP006261.1^MCF2L^ENSG00000126217.21" ; gene_name MCF2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000017377.18" ; havana_transcript "OTTHUMT00000339076.1" ; hgnc_id "HGNC:14576" ; level 2 ; orig_coord_info "chr13,113087350,113087456,+" ; protein_id "ENSP00000261963.7" ; tag mRNA_start_NF cds_start_NF ; transcript_id "MCF2L--AP006261.1^ENST00000261963.11" ; transcript_name "MCF2L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MSI2--AC092674.1 HAVANA gene 1673 54046 . + . FI_gene_label "MSI2^ENSG00000153944.12" ; ID "MSI2--AC092674.1^MSI2^ENSG00000153944.12" ; ccdsid "CCDS11596.1" ; exon_id "ENSE00002219180.3" ; exon_number 1 ; gene_id "MSI2--AC092674.1^MSI2^ENSG00000153944.12" ; gene_name MSI2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178398.4" ; havana_transcript "OTTHUMT00000441813.2" ; hgnc_id "HGNC:18585" ; level 2 ; orig_coord_info "chr17,57256743,57256804,+" ; protein_id "ENSP00000284073.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MSI2--AC092674.1^ENST00000284073.7" ; transcript_name "MSI2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MSI2--AC092674.1 HAVANA mRNA 1673 54046 . + . FI_gene_label "MSI2^ENSG00000153944.12" ; ID "MSI2--AC092674.1^ENST00000284073.7" ; Parent "MSI2--AC092674.1^MSI2^ENSG00000153944.12" ; ccdsid "CCDS11596.1" ; exon_id "ENSE00002219180.3" ; exon_number 1 ; gene_id "MSI2--AC092674.1^MSI2^ENSG00000153944.12" ; gene_name MSI2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178398.4" ; havana_transcript "OTTHUMT00000441813.2" ; hgnc_id "HGNC:18585" ; level 2 ; orig_coord_info "chr17,57256743,57256804,+" ; protein_id "ENSP00000284073.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MSI2--AC092674.1^ENST00000284073.7" ; transcript_name "MSI2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MSI2--CXCL13 HAVANA gene 1673 54046 . + . FI_gene_label "MSI2^ENSG00000153944.12" ; ID "MSI2--CXCL13^MSI2^ENSG00000153944.12" ; ccdsid "CCDS11596.1" ; exon_id "ENSE00002219180.3" ; exon_number 1 ; gene_id "MSI2--CXCL13^MSI2^ENSG00000153944.12" ; gene_name MSI2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178398.4" ; havana_transcript "OTTHUMT00000441813.2" ; hgnc_id "HGNC:18585" ; level 2 ; orig_coord_info "chr17,57256743,57256804,+" ; protein_id "ENSP00000284073.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MSI2--CXCL13^ENST00000284073.7" ; transcript_name "MSI2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MSI2--CXCL13 HAVANA mRNA 1673 54046 . + . FI_gene_label "MSI2^ENSG00000153944.12" ; ID "MSI2--CXCL13^ENST00000284073.7" ; Parent "MSI2--CXCL13^MSI2^ENSG00000153944.12" ; ccdsid "CCDS11596.1" ; exon_id "ENSE00002219180.3" ; exon_number 1 ; gene_id "MSI2--CXCL13^MSI2^ENSG00000153944.12" ; gene_name MSI2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178398.4" ; havana_transcript "OTTHUMT00000441813.2" ; hgnc_id "HGNC:18585" ; level 2 ; orig_coord_info "chr17,57256743,57256804,+" ; protein_id "ENSP00000284073.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MSI2--CXCL13^ENST00000284073.7" ; transcript_name "MSI2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MSI2--CXCL13 HAVANA gene 57047 61542 . + . FI_gene_label "CXCL13^ENSG00000156234.7" ; ID "MSI2--CXCL13^CXCL13^ENSG00000156234.7" ; ccdsid "CCDS3582.1" ; exon_id "ENSE00001372977.3" ; exon_number 2 ; gene_id "MSI2--CXCL13^CXCL13^ENSG00000156234.7" ; gene_name CXCL13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130201.3" ; havana_transcript "OTTHUMT00000252519.1" ; hgnc_id "HGNC:10639" ; level 2 ; orig_coord_info "chr4,77605866,77605929,+" ; protein_id "ENSP00000286758.4" ; tag basic appris_principal_1 CCDS ; transcript_id "MSI2--CXCL13^ENST00000286758.4" ; transcript_name "CXCL13-201" ; transcript_support_level 1 ; transcript_type protein_coding
MSI2--CXCL13 HAVANA mRNA 57047 61542 . + . FI_gene_label "CXCL13^ENSG00000156234.7" ; ID "MSI2--CXCL13^ENST00000286758.4" ; Parent "MSI2--CXCL13^CXCL13^ENSG00000156234.7" ; ccdsid "CCDS3582.1" ; exon_id "ENSE00001372977.3" ; exon_number 2 ; gene_id "MSI2--CXCL13^CXCL13^ENSG00000156234.7" ; gene_name CXCL13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130201.3" ; havana_transcript "OTTHUMT00000252519.1" ; hgnc_id "HGNC:10639" ; level 2 ; orig_coord_info "chr4,77605866,77605929,+" ; protein_id "ENSP00000286758.4" ; tag basic appris_principal_1 CCDS ; transcript_id "MSI2--CXCL13^ENST00000286758.4" ; transcript_name "CXCL13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA10 HAVANA gene 6885 16338 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA10 HAVANA mRNA 6885 16338 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA3--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA10 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA10 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA10^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA11 HAVANA gene 6700 15505 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA11 HAVANA mRNA 6700 15505 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA3--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA11 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA11 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA11^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA12 HAVANA gene 6696 14588 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA12 HAVANA mRNA 6696 14588 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA3--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA12 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA12 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA12^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA8 HAVANA gene 9172 18352 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA8 HAVANA mRNA 9172 18352 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA3--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA8 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA8 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA8^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA9 HAVANA gene 6717 14444 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA9 HAVANA mRNA 6717 14444 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA3--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA9 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA9 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA9^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB6 HAVANA gene 6878 16477 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGB6 HAVANA mRNA 6878 16477 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA3--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB6 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGB6 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB6^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB7 HAVANA gene 6728 14657 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGB7 HAVANA mRNA 6728 14657 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA3--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB7 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGB7 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB7^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC3 HAVANA gene 6715 16901 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC3 HAVANA mRNA 6715 16901 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA3--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC3 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC3 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC3^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC4 HAVANA gene 6873 14669 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC4 HAVANA mRNA 6873 14669 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA3--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC4 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC4 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC4^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC5 HAVANA gene 6696 14721 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC5 HAVANA mRNA 6696 14721 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA3--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC5 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC5 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC5^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PRDX6-AS1--RABGAP1L HAVANA gene 15893 57421 . + . FI_gene_label "RABGAP1L^ENSG00000152061.23" ; ID "PRDX6-AS1--RABGAP1L^RABGAP1L^ENSG00000152061.23" ; ccdsid "CCDS1314.1" ; exon_id "ENSE00001445393.1" ; exon_number 2 ; gene_id "PRDX6-AS1--RABGAP1L^RABGAP1L^ENSG00000152061.23" ; gene_name RABGAP1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000034899.9" ; havana_transcript "OTTHUMT00000084497.1" ; hgnc_id "HGNC:24663" ; level 2 ; orig_coord_info "chr1,174219158,174219295,+" ; protein_id "ENSP00000251507.4" ; tag basic appris_principal_1 CCDS ; transcript_id "PRDX6-AS1--RABGAP1L^ENST00000251507.8" ; transcript_name "RABGAP1L-201" ; transcript_support_level 2 ; transcript_type protein_coding
PRDX6-AS1--RABGAP1L HAVANA mRNA 15893 57421 . + . FI_gene_label "RABGAP1L^ENSG00000152061.23" ; ID "PRDX6-AS1--RABGAP1L^ENST00000251507.8" ; Parent "PRDX6-AS1--RABGAP1L^RABGAP1L^ENSG00000152061.23" ; ccdsid "CCDS1314.1" ; exon_id "ENSE00001445393.1" ; exon_number 2 ; gene_id "PRDX6-AS1--RABGAP1L^RABGAP1L^ENSG00000152061.23" ; gene_name RABGAP1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000034899.9" ; havana_transcript "OTTHUMT00000084497.1" ; hgnc_id "HGNC:24663" ; level 2 ; orig_coord_info "chr1,174219158,174219295,+" ; protein_id "ENSP00000251507.4" ; tag basic appris_principal_1 CCDS ; transcript_id "PRDX6-AS1--RABGAP1L^ENST00000251507.8" ; transcript_name "RABGAP1L-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SEC61A1--CHD3 HAVANA gene 1797 13186 . + . FI_gene_label "SEC61A1^ENSG00000058262.10" ; ID "SEC61A1--CHD3^SEC61A1^ENSG00000058262.10" ; ccdsid "CCDS3046.1" ; exon_id "ENSE00001374740.2" ; exon_number 1 ; gene_id "SEC61A1--CHD3^SEC61A1^ENSG00000058262.10" ; gene_name SEC61A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159624.5" ; havana_transcript "OTTHUMT00000356541.3" ; hgnc_id "HGNC:18276" ; level 2 ; orig_coord_info "chr3,128052553,128052559,+" ; protein_id "ENSP00000243253.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SEC61A1--CHD3^ENST00000243253.8" ; transcript_name "SEC61A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SEC61A1--CHD3 HAVANA mRNA 1797 13186 . + . FI_gene_label "SEC61A1^ENSG00000058262.10" ; ID "SEC61A1--CHD3^ENST00000243253.8" ; Parent "SEC61A1--CHD3^SEC61A1^ENSG00000058262.10" ; ccdsid "CCDS3046.1" ; exon_id "ENSE00001374740.2" ; exon_number 1 ; gene_id "SEC61A1--CHD3^SEC61A1^ENSG00000058262.10" ; gene_name SEC61A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159624.5" ; havana_transcript "OTTHUMT00000356541.3" ; hgnc_id "HGNC:18276" ; level 2 ; orig_coord_info "chr3,128052553,128052559,+" ; protein_id "ENSP00000243253.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SEC61A1--CHD3^ENST00000243253.8" ; transcript_name "SEC61A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SEC61A1--CHD3 HAVANA gene 20067 42064 . + . FI_gene_label "CHD3^ENSG00000170004.17" ; ID "SEC61A1--CHD3^CHD3^ENSG00000170004.17" ; ccdsid "CCDS32554.1" ; exon_id "ENSE00002278191.2" ; exon_number 1 ; gene_id "SEC61A1--CHD3^CHD3^ENSG00000170004.17" ; gene_name CHD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150427.5" ; havana_transcript "OTTHUMT00000318050.2" ; hgnc_id "HGNC:1918" ; level 2 ; orig_coord_info "chr17,7889001,7889100,+" ; protein_id "ENSP00000332628.7" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_4 CCDS ; transcript_id "SEC61A1--CHD3^ENST00000330494.12" ; transcript_name "CHD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
SEC61A1--CHD3 HAVANA mRNA 20067 42064 . + . FI_gene_label "CHD3^ENSG00000170004.17" ; ID "SEC61A1--CHD3^ENST00000330494.12" ; Parent "SEC61A1--CHD3^CHD3^ENSG00000170004.17" ; ccdsid "CCDS32554.1" ; exon_id "ENSE00002278191.2" ; exon_number 1 ; gene_id "SEC61A1--CHD3^CHD3^ENSG00000170004.17" ; gene_name CHD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150427.5" ; havana_transcript "OTTHUMT00000318050.2" ; hgnc_id "HGNC:1918" ; level 2 ; orig_coord_info "chr17,7889001,7889100,+" ; protein_id "ENSP00000332628.7" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_4 CCDS ; transcript_id "SEC61A1--CHD3^ENST00000330494.12" ; transcript_name "CHD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SOS2--TAMM41 HAVANA gene 1001 29469 . + . FI_gene_label "SOS2^ENSG00000100485.12" ; ID "SOS2--TAMM41^SOS2^ENSG00000100485.12" ; ccdsid "CCDS9697.1" ; exon_id "ENSE00002525812.2" ; exon_number 1 ; gene_id "SOS2--TAMM41^SOS2^ENSG00000100485.12" ; gene_name SOS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140292.5" ; havana_transcript "OTTHUMT00000276878.4" ; hgnc_id "HGNC:11188" ; level 2 ; orig_coord_info "chr14,50231197,50231283,-" ; protein_id "ENSP00000216373.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SOS2--TAMM41^ENST00000216373.10" ; transcript_name "SOS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SOS2--TAMM41 HAVANA mRNA 1001 29469 . + . FI_gene_label "SOS2^ENSG00000100485.12" ; ID "SOS2--TAMM41^ENST00000216373.10" ; Parent "SOS2--TAMM41^SOS2^ENSG00000100485.12" ; ccdsid "CCDS9697.1" ; exon_id "ENSE00002525812.2" ; exon_number 1 ; gene_id "SOS2--TAMM41^SOS2^ENSG00000100485.12" ; gene_name SOS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140292.5" ; havana_transcript "OTTHUMT00000276878.4" ; hgnc_id "HGNC:11188" ; level 2 ; orig_coord_info "chr14,50231197,50231283,-" ; protein_id "ENSP00000216373.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SOS2--TAMM41^ENST00000216373.10" ; transcript_name "SOS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SOS2--TAMM41 HAVANA gene 32470 48600 . + . FI_gene_label "TAMM41^ENSG00000144559.10" ; ID "SOS2--TAMM41^TAMM41^ENSG00000144559.10" ; ccdsid "CCDS2607.1" ; exon_id "ENSE00001866827.1" ; exon_number 1 ; gene_id "SOS2--TAMM41^TAMM41^ENSG00000144559.10" ; gene_name TAMM41 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129741.4" ; havana_transcript "OTTHUMT00000251952.3" ; hgnc_id "HGNC:25187" ; level 2 ; orig_coord_info "chr3,11846502,11846636,-" ; protein_id "ENSP00000273037.5" ; tag basic CCDS ; transcript_id "SOS2--TAMM41^ENST00000273037.9" ; transcript_name "TAMM41-201" ; transcript_support_level 1 ; transcript_type protein_coding
SOS2--TAMM41 HAVANA mRNA 32470 48600 . + . FI_gene_label "TAMM41^ENSG00000144559.10" ; ID "SOS2--TAMM41^ENST00000273037.9" ; Parent "SOS2--TAMM41^TAMM41^ENSG00000144559.10" ; ccdsid "CCDS2607.1" ; exon_id "ENSE00001866827.1" ; exon_number 1 ; gene_id "SOS2--TAMM41^TAMM41^ENSG00000144559.10" ; gene_name TAMM41 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129741.4" ; havana_transcript "OTTHUMT00000251952.3" ; hgnc_id "HGNC:25187" ; level 2 ; orig_coord_info "chr3,11846502,11846636,-" ; protein_id "ENSP00000273037.5" ; tag basic CCDS ; transcript_id "SOS2--TAMM41^ENST00000273037.9" ; transcript_name "TAMM41-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TGS1--AC138035.1 HAVANA gene 1001 16908 . + . FI_gene_label "TGS1^ENSG00000137574.11" ; ID "TGS1--AC138035.1^TGS1^ENSG00000137574.11" ; ccdsid "CCDS34894.1" ; exon_id "ENSE00001310628.3" ; exon_number 1 ; gene_id "TGS1--AC138035.1^TGS1^ENSG00000137574.11" ; gene_name TGS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164294.2" ; havana_transcript "OTTHUMT00000378152.2" ; hgnc_id "HGNC:17843" ; level 2 ; orig_coord_info "chr8,55773619,55773719,+" ; protein_id "ENSP00000260129.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TGS1--AC138035.1^ENST00000260129.6" ; transcript_name "TGS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TGS1--AC138035.1 HAVANA mRNA 1001 16908 . + . FI_gene_label "TGS1^ENSG00000137574.11" ; ID "TGS1--AC138035.1^ENST00000260129.6" ; Parent "TGS1--AC138035.1^TGS1^ENSG00000137574.11" ; ccdsid "CCDS34894.1" ; exon_id "ENSE00001310628.3" ; exon_number 1 ; gene_id "TGS1--AC138035.1^TGS1^ENSG00000137574.11" ; gene_name TGS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164294.2" ; havana_transcript "OTTHUMT00000378152.2" ; hgnc_id "HGNC:17843" ; level 2 ; orig_coord_info "chr8,55773619,55773719,+" ; protein_id "ENSP00000260129.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TGS1--AC138035.1^ENST00000260129.6" ; transcript_name "TGS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMC5--AC002331.1 HAVANA gene 9247 29737 . + . FI_gene_label "TMC5^ENSG00000103534.17" ; ID "TMC5--AC002331.1^TMC5^ENSG00000103534.17" ; ccdsid "CCDS10577.1" ; exon_id "ENSE00001234345.5" ; exon_number 1 ; gene_id "TMC5--AC002331.1^TMC5^ENSG00000103534.17" ; gene_name TMC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131458.5" ; havana_transcript "OTTHUMT00000254282.1" ; hgnc_id "HGNC:22999" ; level 2 ; orig_coord_info "chr16,19456707,19457016,+" ; protein_id "ENSP00000219821.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "TMC5--AC002331.1^ENST00000219821.9" ; transcript_name "TMC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMC5--AC002331.1 HAVANA mRNA 9247 29737 . + . FI_gene_label "TMC5^ENSG00000103534.17" ; ID "TMC5--AC002331.1^ENST00000219821.9" ; Parent "TMC5--AC002331.1^TMC5^ENSG00000103534.17" ; ccdsid "CCDS10577.1" ; exon_id "ENSE00001234345.5" ; exon_number 1 ; gene_id "TMC5--AC002331.1^TMC5^ENSG00000103534.17" ; gene_name TMC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131458.5" ; havana_transcript "OTTHUMT00000254282.1" ; hgnc_id "HGNC:22999" ; level 2 ; orig_coord_info "chr16,19456707,19457016,+" ; protein_id "ENSP00000219821.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "TMC5--AC002331.1^ENST00000219821.9" ; transcript_name "TMC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMC5--AC009035.1 HAVANA gene 9247 29737 . + . FI_gene_label "TMC5^ENSG00000103534.17" ; ID "TMC5--AC009035.1^TMC5^ENSG00000103534.17" ; ccdsid "CCDS10577.1" ; exon_id "ENSE00001234345.5" ; exon_number 1 ; gene_id "TMC5--AC009035.1^TMC5^ENSG00000103534.17" ; gene_name TMC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131458.5" ; havana_transcript "OTTHUMT00000254282.1" ; hgnc_id "HGNC:22999" ; level 2 ; orig_coord_info "chr16,19456707,19457016,+" ; protein_id "ENSP00000219821.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "TMC5--AC009035.1^ENST00000219821.9" ; transcript_name "TMC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMC5--AC009035.1 HAVANA mRNA 9247 29737 . + . FI_gene_label "TMC5^ENSG00000103534.17" ; ID "TMC5--AC009035.1^ENST00000219821.9" ; Parent "TMC5--AC009035.1^TMC5^ENSG00000103534.17" ; ccdsid "CCDS10577.1" ; exon_id "ENSE00001234345.5" ; exon_number 1 ; gene_id "TMC5--AC009035.1^TMC5^ENSG00000103534.17" ; gene_name TMC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131458.5" ; havana_transcript "OTTHUMT00000254282.1" ; hgnc_id "HGNC:22999" ; level 2 ; orig_coord_info "chr16,19456707,19457016,+" ; protein_id "ENSP00000219821.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "TMC5--AC009035.1^ENST00000219821.9" ; transcript_name "TMC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTC28--CHEK2 HAVANA gene 40569 63583 . + . FI_gene_label "CHEK2^ENSG00000183765.23" ; ID "TTC28--CHEK2^CHEK2^ENSG00000183765.23" ; ccdsid "CCDS13844.1" ; exon_id "ENSE00003478809.1" ; exon_number 2 ; gene_id "TTC28--CHEK2^CHEK2^ENSG00000183765.23" ; gene_name CHEK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151023.24" ; havana_transcript "OTTHUMT00000321281.1" ; hgnc_id "HGNC:16627" ; level 2 ; orig_coord_info "chr22,28734403,28734721,-" ; protein_id "ENSP00000329012.5" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "TTC28--CHEK2^ENST00000348295.7" ; transcript_name "CHEK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
TTC28--CHEK2 HAVANA mRNA 40569 63583 . + . FI_gene_label "CHEK2^ENSG00000183765.23" ; ID "TTC28--CHEK2^ENST00000348295.7" ; Parent "TTC28--CHEK2^CHEK2^ENSG00000183765.23" ; ccdsid "CCDS13844.1" ; exon_id "ENSE00003478809.1" ; exon_number 2 ; gene_id "TTC28--CHEK2^CHEK2^ENSG00000183765.23" ; gene_name CHEK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151023.24" ; havana_transcript "OTTHUMT00000321281.1" ; hgnc_id "HGNC:16627" ; level 2 ; orig_coord_info "chr22,28734403,28734721,-" ; protein_id "ENSP00000329012.5" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "TTC28--CHEK2^ENST00000348295.7" ; transcript_name "CHEK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TTC28--CHEK2 HAVANA gene 1001 36980 . + . FI_gene_label "TTC28^ENSG00000100154.14" ; ID "TTC28--CHEK2^TTC28^ENSG00000100154.14" ; ccdsid "CCDS46678.1" ; exon_id "ENSE00001556591.1" ; exon_number 1 ; gene_id "TTC28--CHEK2^TTC28^ENSG00000100154.14" ; gene_name TTC28 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151006.5" ; havana_transcript "OTTHUMT00000320930.3" ; hgnc_id "HGNC:29179" ; level 1 ; orig_coord_info "chr22,28679622,28679723,-" ; protein_id "ENSP00000381003.2" ; tag dotter_confirmed not_organism_supported basic appris_principal_1 exp_conf CCDS ; transcript_id "TTC28--CHEK2^ENST00000397906.6" ; transcript_name "TTC28-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTC28--CHEK2 HAVANA mRNA 1001 36980 . + . FI_gene_label "TTC28^ENSG00000100154.14" ; ID "TTC28--CHEK2^ENST00000397906.6" ; Parent "TTC28--CHEK2^TTC28^ENSG00000100154.14" ; ccdsid "CCDS46678.1" ; exon_id "ENSE00001556591.1" ; exon_number 1 ; gene_id "TTC28--CHEK2^TTC28^ENSG00000100154.14" ; gene_name TTC28 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151006.5" ; havana_transcript "OTTHUMT00000320930.3" ; hgnc_id "HGNC:29179" ; level 1 ; orig_coord_info "chr22,28679622,28679723,-" ; protein_id "ENSP00000381003.2" ; tag dotter_confirmed not_organism_supported basic appris_principal_1 exp_conf CCDS ; transcript_id "TTC28--CHEK2^ENST00000397906.6" ; transcript_name "TTC28-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UPK3B--AC211476.4 HAVANA gene 1001 5731 . + . FI_gene_label "UPK3B^ENSG00000243566.7" ; ID "UPK3B--AC211476.4^UPK3B^ENSG00000243566.7" ; exon_id "ENSE00001331331.5" ; exon_number 1 ; gene_id "UPK3B--AC211476.4^UPK3B^ENSG00000243566.7" ; gene_name UPK3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000149929.3" ; havana_transcript "OTTHUMT00000313978.2" ; hgnc_id "HGNC:21444" ; level 2 ; orig_coord_info "chr7,76510653,76511052,+" ; protein_id "ENSP00000257632.5" ; tag basic appris_alternative_2 ; transcript_id "UPK3B--AC211476.4^ENST00000257632.9" ; transcript_name "UPK3B-201" ; transcript_support_level 2 ; transcript_type protein_coding
UPK3B--AC211476.4 HAVANA mRNA 1001 5731 . + . FI_gene_label "UPK3B^ENSG00000243566.7" ; ID "UPK3B--AC211476.4^ENST00000257632.9" ; Parent "UPK3B--AC211476.4^UPK3B^ENSG00000243566.7" ; exon_id "ENSE00001331331.5" ; exon_number 1 ; gene_id "UPK3B--AC211476.4^UPK3B^ENSG00000243566.7" ; gene_name UPK3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000149929.3" ; havana_transcript "OTTHUMT00000313978.2" ; hgnc_id "HGNC:21444" ; level 2 ; orig_coord_info "chr7,76510653,76511052,+" ; protein_id "ENSP00000257632.5" ; tag basic appris_alternative_2 ; transcript_id "UPK3B--AC211476.4^ENST00000257632.9" ; transcript_name "UPK3B-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZCCHC7--BX255923.2 HAVANA gene 1032 7223 . + . FI_gene_label "ZCCHC7^ENSG00000147905.18" ; ID "ZCCHC7--BX255923.2^ZCCHC7^ENSG00000147905.18" ; exon_id "ENSE00003495130.1" ; exon_number 3 ; gene_id "ZCCHC7--BX255923.2^ZCCHC7^ENSG00000147905.18" ; gene_name ZCCHC7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019915.3" ; havana_transcript "OTTHUMT00000052451.1" ; hgnc_id "HGNC:26209" ; level 2 ; orig_coord_info "chr9,37126336,37126942,+" ; protein_id "ENSP00000316365.6" ; tag basic ; transcript_id "ZCCHC7--BX255923.2^ENST00000322831.6" ; transcript_name "ZCCHC7-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZCCHC7--BX255923.2 HAVANA mRNA 1032 7223 . + . FI_gene_label "ZCCHC7^ENSG00000147905.18" ; ID "ZCCHC7--BX255923.2^ENST00000322831.6" ; Parent "ZCCHC7--BX255923.2^ZCCHC7^ENSG00000147905.18" ; exon_id "ENSE00003495130.1" ; exon_number 3 ; gene_id "ZCCHC7--BX255923.2^ZCCHC7^ENSG00000147905.18" ; gene_name ZCCHC7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019915.3" ; havana_transcript "OTTHUMT00000052451.1" ; hgnc_id "HGNC:26209" ; level 2 ; orig_coord_info "chr9,37126336,37126942,+" ; protein_id "ENSP00000316365.6" ; tag basic ; transcript_id "ZCCHC7--BX255923.2^ENST00000322831.6" ; transcript_name "ZCCHC7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF431--FGF13 HAVANA gene 33361 41200 . + . FI_gene_label "FGF13^ENSG00000129682.16" ; ID "ZNF431--FGF13^FGF13^ENSG00000129682.16" ; ccdsid "CCDS14664.1" ; exon_id "ENSE00001235498.1" ; exon_number 1 ; gene_id "ZNF431--FGF13^FGF13^ENSG00000129682.16" ; gene_name FGF13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022532.8" ; havana_transcript "OTTHUMT00000058535.2" ; hgnc_id "HGNC:3670" ; level 2 ; orig_coord_info "chrX,138739242,138739269,-" ; protein_id "ENSP00000303391.4" ; tag basic CCDS ; transcript_id "ZNF431--FGF13^ENST00000305414.8" ; transcript_name "FGF13-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF431--FGF13 HAVANA mRNA 33361 41200 . + . FI_gene_label "FGF13^ENSG00000129682.16" ; ID "ZNF431--FGF13^ENST00000305414.8" ; Parent "ZNF431--FGF13^FGF13^ENSG00000129682.16" ; ccdsid "CCDS14664.1" ; exon_id "ENSE00001235498.1" ; exon_number 1 ; gene_id "ZNF431--FGF13^FGF13^ENSG00000129682.16" ; gene_name FGF13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022532.8" ; havana_transcript "OTTHUMT00000058535.2" ; hgnc_id "HGNC:3670" ; level 2 ; orig_coord_info "chrX,138739242,138739269,-" ; protein_id "ENSP00000303391.4" ; tag basic CCDS ; transcript_id "ZNF431--FGF13^ENST00000305414.8" ; transcript_name "FGF13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF431--FGF13 HAVANA gene 1017 22132 . + . FI_gene_label "ZNF431^ENSG00000196705.8" ; ID "ZNF431--FGF13^ZNF431^ENSG00000196705.8" ; ccdsid "CCDS32979.1" ; exon_id "ENSE00003141770.1" ; exon_number 1 ; gene_id "ZNF431--FGF13^ZNF431^ENSG00000196705.8" ; gene_name ZNF431 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182835.3" ; havana_transcript "OTTHUMT00000463943.2" ; hgnc_id "HGNC:20809" ; level 2 ; orig_coord_info "chr19,21142184,21142186,+" ; protein_id "ENSP00000308578.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF431--FGF13^ENST00000311048.11" ; transcript_name "ZNF431-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF431--FGF13 HAVANA mRNA 1017 22132 . + . FI_gene_label "ZNF431^ENSG00000196705.8" ; ID "ZNF431--FGF13^ENST00000311048.11" ; Parent "ZNF431--FGF13^ZNF431^ENSG00000196705.8" ; ccdsid "CCDS32979.1" ; exon_id "ENSE00003141770.1" ; exon_number 1 ; gene_id "ZNF431--FGF13^ZNF431^ENSG00000196705.8" ; gene_name ZNF431 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182835.3" ; havana_transcript "OTTHUMT00000463943.2" ; hgnc_id "HGNC:20809" ; level 2 ; orig_coord_info "chr19,21142184,21142186,+" ; protein_id "ENSP00000308578.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF431--FGF13^ENST00000311048.11" ; transcript_name "ZNF431-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC004918.3--ULK4 HAVANA gene 1001 1925 . + . FI_gene_label "AC004918.3^ENSG00000270157.1" ; ID "AC004918.3--ULK4^AC004918.3^ENSG00000270157.1" ; exon_id "ENSE00003334837.1" ; exon_number 1 ; gene_id "AC004918.3--ULK4^AC004918.3^ENSG00000270157.1" ; gene_name "AC004918.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000184086.1" ; havana_transcript "OTTHUMT00000468005.1" ; level 2 ; orig_coord_info "chr7,141662922,141663846,-" ; tag basic ; transcript_id "AC004918.3--ULK4^ENST00000602609.1" ; transcript_name "AC004918.3-201" ; transcript_support_level NA ; transcript_type lncRNA
AC004918.3--ULK4 HAVANA RNA 1001 1925 . + . FI_gene_label "AC004918.3^ENSG00000270157.1" ; ID "AC004918.3--ULK4^ENST00000602609.1" ; Parent "AC004918.3--ULK4^AC004918.3^ENSG00000270157.1" ; exon_id "ENSE00003334837.1" ; exon_number 1 ; gene_id "AC004918.3--ULK4^AC004918.3^ENSG00000270157.1" ; gene_name "AC004918.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000184086.1" ; havana_transcript "OTTHUMT00000468005.1" ; level 2 ; orig_coord_info "chr7,141662922,141663846,-" ; tag basic ; transcript_id "AC004918.3--ULK4^ENST00000602609.1" ; transcript_name "AC004918.3-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AL611929.1--AFDN HAVANA gene 1001 2449 . + . FI_gene_label "AL611929.1^ENSG00000234768.1" ; ID "AL611929.1--AFDN^AL611929.1^ENSG00000234768.1" ; exon_id "ENSE00001737795.1" ; exon_number 1 ; gene_id "AL611929.1--AFDN^AL611929.1^ENSG00000234768.1" ; gene_name "AL611929.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000016040.1" ; havana_transcript "OTTHUMT00000043187.1" ; level 1 ; orig_coord_info "chr6,168194358,168194688,+" ; tag basic exp_conf ; transcript_id "AL611929.1--AFDN^ENST00000457340.1" ; transcript_name "AL611929.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
AL611929.1--AFDN HAVANA RNA 1001 2449 . + . FI_gene_label "AL611929.1^ENSG00000234768.1" ; ID "AL611929.1--AFDN^ENST00000457340.1" ; Parent "AL611929.1--AFDN^AL611929.1^ENSG00000234768.1" ; exon_id "ENSE00001737795.1" ; exon_number 1 ; gene_id "AL611929.1--AFDN^AL611929.1^ENSG00000234768.1" ; gene_name "AL611929.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000016040.1" ; havana_transcript "OTTHUMT00000043187.1" ; level 1 ; orig_coord_info "chr6,168194358,168194688,+" ; tag basic exp_conf ; transcript_id "AL611929.1--AFDN^ENST00000457340.1" ; transcript_name "AL611929.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
ATF6--AP000977.1 HAVANA gene 38823 42730 . + . FI_gene_label "AP000977.1^ENSG00000246790.2" ; ID "ATF6--AP000977.1^AP000977.1^ENSG00000246790.2" ; exon_id "ENSE00001972032.1" ; exon_number 1 ; gene_id "ATF6--AP000977.1^AP000977.1^ENSG00000246790.2" ; gene_name "AP000977.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166056.1" ; havana_transcript "OTTHUMT00000387624.1" ; level 2 ; orig_coord_info "chr11,121452675,121453013,-" ; tag basic ; transcript_id "ATF6--AP000977.1^ENST00000501964.1" ; transcript_name "AP000977.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
ATF6--AP000977.1 HAVANA RNA 38823 42730 . + . FI_gene_label "AP000977.1^ENSG00000246790.2" ; ID "ATF6--AP000977.1^ENST00000501964.1" ; Parent "ATF6--AP000977.1^AP000977.1^ENSG00000246790.2" ; exon_id "ENSE00001972032.1" ; exon_number 1 ; gene_id "ATF6--AP000977.1^AP000977.1^ENSG00000246790.2" ; gene_name "AP000977.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166056.1" ; havana_transcript "OTTHUMT00000387624.1" ; level 2 ; orig_coord_info "chr11,121452675,121453013,-" ; tag basic ; transcript_id "ATF6--AP000977.1^ENST00000501964.1" ; transcript_name "AP000977.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
ATF6--AP002365.1 HAVANA gene 38823 39594 . + . FI_gene_label "AP002365.1^ENSG00000271022.1" ; ID "ATF6--AP002365.1^AP002365.1^ENSG00000271022.1" ; exon_id "ENSE00003516056.1" ; exon_number 1 ; gene_id "ATF6--AP002365.1^AP002365.1^ENSG00000271022.1" ; gene_name "AP002365.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184782.1" ; havana_transcript "OTTHUMT00000469180.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,121426645,121427416,-" ; tag pseudo_consens basic ; transcript_id "ATF6--AP002365.1^ENST00000603448.1" ; transcript_name "AP002365.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ATF6--AP002365.1 HAVANA RNA 38823 39594 . + . FI_gene_label "AP002365.1^ENSG00000271022.1" ; ID "ATF6--AP002365.1^ENST00000603448.1" ; Parent "ATF6--AP002365.1^AP002365.1^ENSG00000271022.1" ; exon_id "ENSE00003516056.1" ; exon_number 1 ; gene_id "ATF6--AP002365.1^AP002365.1^ENSG00000271022.1" ; gene_name "AP002365.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184782.1" ; havana_transcript "OTTHUMT00000469180.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,121426645,121427416,-" ; tag pseudo_consens basic ; transcript_id "ATF6--AP002365.1^ENST00000603448.1" ; transcript_name "AP002365.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
BLOC1S5--CDH12P1 HAVANA gene 14657 14951 . + . FI_gene_label "CDH12P1^ENSG00000254335.1" ; ID "BLOC1S5--CDH12P1^CDH12P1^ENSG00000254335.1" ; exon_id "ENSE00002096825.1" ; exon_number 1 ; gene_id "BLOC1S5--CDH12P1^CDH12P1^ENSG00000254335.1" ; gene_name CDH12P1 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000164541.1" ; havana_transcript "OTTHUMT00000368952.2" ; hgnc_id "HGNC:37698" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr5,70860285,70860579,-" ; tag basic ; transcript_id "BLOC1S5--CDH12P1^ENST00000518435.1" ; transcript_name "CDH12P1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
BLOC1S5--CDH12P1 HAVANA RNA 14657 14951 . + . FI_gene_label "CDH12P1^ENSG00000254335.1" ; ID "BLOC1S5--CDH12P1^ENST00000518435.1" ; Parent "BLOC1S5--CDH12P1^CDH12P1^ENSG00000254335.1" ; exon_id "ENSE00002096825.1" ; exon_number 1 ; gene_id "BLOC1S5--CDH12P1^CDH12P1^ENSG00000254335.1" ; gene_name CDH12P1 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000164541.1" ; havana_transcript "OTTHUMT00000368952.2" ; hgnc_id "HGNC:37698" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr5,70860285,70860579,-" ; tag basic ; transcript_id "BLOC1S5--CDH12P1^ENST00000518435.1" ; transcript_name "CDH12P1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
BLOC1S5--GUSBP16 HAVANA gene 14657 19296 . + . FI_gene_label "GUSBP16^ENSG00000253366.3" ; ID "BLOC1S5--GUSBP16^GUSBP16^ENSG00000253366.3" ; exon_id "ENSE00002057898.2" ; exon_number 1 ; gene_id "BLOC1S5--GUSBP16^GUSBP16^ENSG00000253366.3" ; gene_name GUSBP16 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000162420.3" ; havana_transcript "OTTHUMT00000368846.2" ; hgnc_id "HGNC:54498" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr5,70751184,70751232,+" ; tag basic ; transcript_id "BLOC1S5--GUSBP16^ENST00000505516.2" ; transcript_name "GUSBP16-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
BLOC1S5--GUSBP16 HAVANA RNA 14657 19296 . + . FI_gene_label "GUSBP16^ENSG00000253366.3" ; ID "BLOC1S5--GUSBP16^ENST00000505516.2" ; Parent "BLOC1S5--GUSBP16^GUSBP16^ENSG00000253366.3" ; exon_id "ENSE00002057898.2" ; exon_number 1 ; gene_id "BLOC1S5--GUSBP16^GUSBP16^ENSG00000253366.3" ; gene_name GUSBP16 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000162420.3" ; havana_transcript "OTTHUMT00000368846.2" ; hgnc_id "HGNC:54498" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr5,70751184,70751232,+" ; tag basic ; transcript_id "BLOC1S5--GUSBP16^ENST00000505516.2" ; transcript_name "GUSBP16-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
COP1--PRDX6-AS1 HAVANA gene 32132 40361 . + . FI_gene_label "PRDX6-AS1^ENSG00000203739.4" ; ID "COP1--PRDX6-AS1^PRDX6-AS1^ENSG00000203739.4" ; exon_id "ENSE00001445480.2" ; exon_number 1 ; gene_id "COP1--PRDX6-AS1^PRDX6-AS1^ENSG00000203739.4" ; gene_name "PRDX6-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000034807.9" ; havana_transcript "OTTHUMT00000084227.1" ; hgnc_id "HGNC:54870" ; level 2 ; orig_coord_info "chr1,173460378,173461362,-" ; transcript_id "COP1--PRDX6-AS1^ENST00000367716.3" ; transcript_name "PRDX6-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
COP1--PRDX6-AS1 HAVANA RNA 32132 40361 . + . FI_gene_label "PRDX6-AS1^ENSG00000203739.4" ; ID "COP1--PRDX6-AS1^ENST00000367716.3" ; Parent "COP1--PRDX6-AS1^PRDX6-AS1^ENSG00000203739.4" ; exon_id "ENSE00001445480.2" ; exon_number 1 ; gene_id "COP1--PRDX6-AS1^PRDX6-AS1^ENSG00000203739.4" ; gene_name "PRDX6-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000034807.9" ; havana_transcript "OTTHUMT00000084227.1" ; hgnc_id "HGNC:54870" ; level 2 ; orig_coord_info "chr1,173460378,173461362,-" ; transcript_id "COP1--PRDX6-AS1^ENST00000367716.3" ; transcript_name "PRDX6-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
ELL2--AC114316.1 HAVANA gene 22606 36181 . + . FI_gene_label "AC114316.1^ENSG00000250049.7" ; ID "ELL2--AC114316.1^AC114316.1^ENSG00000250049.7" ; exon_id "ENSE00002047116.1" ; exon_number 1 ; gene_id "ELL2--AC114316.1^AC114316.1^ENSG00000250049.7" ; gene_name "AC114316.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000162608.10" ; havana_transcript "OTTHUMT00000369755.1" ; level 2 ; orig_coord_info "chr5,92199537,92199628,+" ; tag basic ; transcript_id "ELL2--AC114316.1^ENST00000502934.1" ; transcript_name "AC114316.1-202" ; transcript_support_level 2 ; transcript_type lncRNA
ELL2--AC114316.1 HAVANA RNA 22606 36181 . + . FI_gene_label "AC114316.1^ENSG00000250049.7" ; ID "ELL2--AC114316.1^ENST00000502934.1" ; Parent "ELL2--AC114316.1^AC114316.1^ENSG00000250049.7" ; exon_id "ENSE00002047116.1" ; exon_number 1 ; gene_id "ELL2--AC114316.1^AC114316.1^ENSG00000250049.7" ; gene_name "AC114316.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000162608.10" ; havana_transcript "OTTHUMT00000369755.1" ; level 2 ; orig_coord_info "chr5,92199537,92199628,+" ; tag basic ; transcript_id "ELL2--AC114316.1^ENST00000502934.1" ; transcript_name "AC114316.1-202" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
ELL2--PCBP2P3 HAVANA gene 21382 22224 . + . FI_gene_label "PCBP2P3^ENSG00000248826.2" ; ID "ELL2--PCBP2P3^PCBP2P3^ENSG00000248826.2" ; exon_id "ENSE00002071227.2" ; exon_number 1 ; gene_id "ELL2--PCBP2P3^PCBP2P3^ENSG00000248826.2" ; gene_name PCBP2P3 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000162612.3" ; havana_transcript "OTTHUMT00000369759.3" ; hgnc_id "HGNC:39032" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr5,91843687,91844529,-" ; tag pseudo_consens basic ; transcript_id "ELL2--PCBP2P3^ENST00000509726.2" ; transcript_name "PCBP2P3-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ELL2--PCBP2P3 HAVANA RNA 21382 22224 . + . FI_gene_label "PCBP2P3^ENSG00000248826.2" ; ID "ELL2--PCBP2P3^ENST00000509726.2" ; Parent "ELL2--PCBP2P3^PCBP2P3^ENSG00000248826.2" ; exon_id "ENSE00002071227.2" ; exon_number 1 ; gene_id "ELL2--PCBP2P3^PCBP2P3^ENSG00000248826.2" ; gene_name PCBP2P3 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000162612.3" ; havana_transcript "OTTHUMT00000369759.3" ; hgnc_id "HGNC:39032" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr5,91843687,91844529,-" ; tag pseudo_consens basic ; transcript_id "ELL2--PCBP2P3^ENST00000509726.2" ; transcript_name "PCBP2P3-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
KIAA1671--AC007731.2 HAVANA gene 34440 35602 . + . FI_gene_label "AC007731.2^ENSG00000235578.1" ; ID "KIAA1671--AC007731.2^AC007731.2^ENSG00000235578.1" ; exon_id "ENSE00001739384.1" ; exon_number 1 ; gene_id "KIAA1671--AC007731.2^AC007731.2^ENSG00000235578.1" ; gene_name "AC007731.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000150605.1" ; havana_transcript "OTTHUMT00000319056.1" ; level 1 ; orig_coord_info "chr22,20344233,20344365,-" ; tag basic exp_conf ; transcript_id "KIAA1671--AC007731.2^ENST00000458154.1" ; transcript_name "AC007731.2-201" ; transcript_support_level 5 ; transcript_type lncRNA
KIAA1671--AC007731.2 HAVANA RNA 34440 35602 . + . FI_gene_label "AC007731.2^ENSG00000235578.1" ; ID "KIAA1671--AC007731.2^ENST00000458154.1" ; Parent "KIAA1671--AC007731.2^AC007731.2^ENSG00000235578.1" ; exon_id "ENSE00001739384.1" ; exon_number 1 ; gene_id "KIAA1671--AC007731.2^AC007731.2^ENSG00000235578.1" ; gene_name "AC007731.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000150605.1" ; havana_transcript "OTTHUMT00000319056.1" ; level 1 ; orig_coord_info "chr22,20344233,20344365,-" ; tag basic exp_conf ; transcript_id "KIAA1671--AC007731.2^ENST00000458154.1" ; transcript_name "AC007731.2-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
KIAA1671--FAM230J HAVANA gene 36754 43243 . + . FI_gene_label "FAM230J^ENSG00000274044.5" ; ID "KIAA1671--FAM230J^FAM230J^ENSG00000274044.5" ; exon_id "ENSE00003719912.1" ; exon_number 1 ; gene_id "KIAA1671--FAM230J^FAM230J^ENSG00000274044.5" ; gene_name FAM230J ; gene_type lncRNA ; havana_gene "OTTHUMG00000188347.2" ; havana_transcript "OTTHUMT00000476949.1" ; hgnc_id "HGNC:52448" ; level 2 ; orig_coord_info "chr22,18386386,18386480,-" ; transcript_id "KIAA1671--FAM230J^ENST00000613790.4" ; transcript_name "FAM230J-201" ; transcript_support_level 4 ; transcript_type lncRNA
KIAA1671--FAM230J HAVANA RNA 36754 43243 . + . FI_gene_label "FAM230J^ENSG00000274044.5" ; ID "KIAA1671--FAM230J^ENST00000613790.4" ; Parent "KIAA1671--FAM230J^FAM230J^ENSG00000274044.5" ; exon_id "ENSE00003719912.1" ; exon_number 1 ; gene_id "KIAA1671--FAM230J^FAM230J^ENSG00000274044.5" ; gene_name FAM230J ; gene_type lncRNA ; havana_gene "OTTHUMG00000188347.2" ; havana_transcript "OTTHUMT00000476949.1" ; hgnc_id "HGNC:52448" ; level 2 ; orig_coord_info "chr22,18386386,18386480,-" ; transcript_id "KIAA1671--FAM230J^ENST00000613790.4" ; transcript_name "FAM230J-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
MCF2L--AP006261.1 HAVANA gene 61998 66548 . + . FI_gene_label "AP006261.1^ENSG00000286593.1" ; ID "MCF2L--AP006261.1^AP006261.1^ENSG00000286593.1" ; exon_id "ENSE00003865604.1" ; exon_number 1 ; gene_id "MCF2L--AP006261.1^AP006261.1^ENSG00000286593.1" ; gene_name "AP006261.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194912.1" ; havana_transcript "OTTHUMT00000523075.1" ; level 2 ; orig_coord_info "chr18,14430669,14430923,-" ; tag basic TAGENE ; transcript_id "MCF2L--AP006261.1^ENST00000671044.1" ; transcript_name "AP006261.1-201" ; transcript_type lncRNA
MCF2L--AP006261.1 HAVANA RNA 61998 66548 . + . FI_gene_label "AP006261.1^ENSG00000286593.1" ; ID "MCF2L--AP006261.1^ENST00000671044.1" ; Parent "MCF2L--AP006261.1^AP006261.1^ENSG00000286593.1" ; exon_id "ENSE00003865604.1" ; exon_number 1 ; gene_id "MCF2L--AP006261.1^AP006261.1^ENSG00000286593.1" ; gene_name "AP006261.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194912.1" ; havana_transcript "OTTHUMT00000523075.1" ; level 2 ; orig_coord_info "chr18,14430669,14430923,-" ; tag basic TAGENE ; transcript_id "MCF2L--AP006261.1^ENST00000671044.1" ; transcript_name "AP006261.1-201" ; transcript_type lncRNA
L1 and L2 created:
MSI2--AC092674.1 HAVANA gene 57047 59617 . + . FI_gene_label "AC092674.1^ENSG00000249036.1" ; ID "MSI2--AC092674.1^AC092674.1^ENSG00000249036.1" ; exon_id "ENSE00002055531.1" ; exon_number 1 ; gene_id "MSI2--AC092674.1^AC092674.1^ENSG00000249036.1" ; gene_name "AC092674.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000160909.1" ; havana_transcript "OTTHUMT00000362903.1" ; level 2 ; orig_coord_info "chr4,77494165,77494286,-" ; tag basic ; transcript_id "MSI2--AC092674.1^ENST00000513871.1" ; transcript_name "AC092674.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
MSI2--AC092674.1 HAVANA RNA 57047 59617 . + . FI_gene_label "AC092674.1^ENSG00000249036.1" ; ID "MSI2--AC092674.1^ENST00000513871.1" ; Parent "MSI2--AC092674.1^AC092674.1^ENSG00000249036.1" ; exon_id "ENSE00002055531.1" ; exon_number 1 ; gene_id "MSI2--AC092674.1^AC092674.1^ENSG00000249036.1" ; gene_name "AC092674.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000160909.1" ; havana_transcript "OTTHUMT00000362903.1" ; level 2 ; orig_coord_info "chr4,77494165,77494286,-" ; tag basic ; transcript_id "MSI2--AC092674.1^ENST00000513871.1" ; transcript_name "AC092674.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
PRDX6-AS1--RABGAP1L HAVANA gene 4556 12785 . + . FI_gene_label "PRDX6-AS1^ENSG00000203739.4" ; ID "PRDX6-AS1--RABGAP1L^PRDX6-AS1^ENSG00000203739.4" ; exon_id "ENSE00001445480.2" ; exon_number 1 ; gene_id "PRDX6-AS1--RABGAP1L^PRDX6-AS1^ENSG00000203739.4" ; gene_name "PRDX6-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000034807.9" ; havana_transcript "OTTHUMT00000084227.1" ; hgnc_id "HGNC:54870" ; level 2 ; orig_coord_info "chr1,173460378,173461362,-" ; transcript_id "PRDX6-AS1--RABGAP1L^ENST00000367716.3" ; transcript_name "PRDX6-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
PRDX6-AS1--RABGAP1L HAVANA RNA 4556 12785 . + . FI_gene_label "PRDX6-AS1^ENSG00000203739.4" ; ID "PRDX6-AS1--RABGAP1L^ENST00000367716.3" ; Parent "PRDX6-AS1--RABGAP1L^PRDX6-AS1^ENSG00000203739.4" ; exon_id "ENSE00001445480.2" ; exon_number 1 ; gene_id "PRDX6-AS1--RABGAP1L^PRDX6-AS1^ENSG00000203739.4" ; gene_name "PRDX6-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000034807.9" ; havana_transcript "OTTHUMT00000084227.1" ; hgnc_id "HGNC:54870" ; level 2 ; orig_coord_info "chr1,173460378,173461362,-" ; transcript_id "PRDX6-AS1--RABGAP1L^ENST00000367716.3" ; transcript_name "PRDX6-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
TGS1--AC138035.1 HAVANA gene 19909 27319 . + . FI_gene_label "AC138035.1^ENSG00000238035.8" ; ID "TGS1--AC138035.1^AC138035.1^ENSG00000238035.8" ; exon_id "ENSE00003471589.1" ; exon_number 1 ; gene_id "TGS1--AC138035.1^AC138035.1^ENSG00000238035.8" ; gene_name "AC138035.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000184458.1" ; havana_transcript "OTTHUMT00000468768.1" ; level 2 ; orig_coord_info "chr5,181306502,181306652,+" ; tag non_canonical_TEC not_best_in_genome_evidence basic ; transcript_id "TGS1--AC138035.1^ENST00000499986.8" ; transcript_name "AC138035.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TGS1--AC138035.1 HAVANA RNA 19909 27319 . + . FI_gene_label "AC138035.1^ENSG00000238035.8" ; ID "TGS1--AC138035.1^ENST00000499986.8" ; Parent "TGS1--AC138035.1^AC138035.1^ENSG00000238035.8" ; exon_id "ENSE00003471589.1" ; exon_number 1 ; gene_id "TGS1--AC138035.1^AC138035.1^ENSG00000238035.8" ; gene_name "AC138035.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000184458.1" ; havana_transcript "OTTHUMT00000468768.1" ; level 2 ; orig_coord_info "chr5,181306502,181306652,+" ; tag non_canonical_TEC not_best_in_genome_evidence basic ; transcript_id "TGS1--AC138035.1^ENST00000499986.8" ; transcript_name "AC138035.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TMC5--AC002331.1 HAVANA gene 32738 36592 . + . FI_gene_label "AC002331.1^ENSG00000286712.1" ; ID "TMC5--AC002331.1^AC002331.1^ENSG00000286712.1" ; exon_id "ENSE00003854421.1" ; exon_number 1 ; gene_id "TMC5--AC002331.1^AC002331.1^ENSG00000286712.1" ; gene_name "AC002331.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195270.1" ; havana_transcript "OTTHUMT00000525724.1" ; level 2 ; orig_coord_info "chr16,26546802,26547009,+" ; tag basic TAGENE ; transcript_id "TMC5--AC002331.1^ENST00000661508.1" ; transcript_name "AC002331.1-201" ; transcript_type lncRNA
TMC5--AC002331.1 HAVANA RNA 32738 36592 . + . FI_gene_label "AC002331.1^ENSG00000286712.1" ; ID "TMC5--AC002331.1^ENST00000661508.1" ; Parent "TMC5--AC002331.1^AC002331.1^ENSG00000286712.1" ; exon_id "ENSE00003854421.1" ; exon_number 1 ; gene_id "TMC5--AC002331.1^AC002331.1^ENSG00000286712.1" ; gene_name "AC002331.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195270.1" ; havana_transcript "OTTHUMT00000525724.1" ; level 2 ; orig_coord_info "chr16,26546802,26547009,+" ; tag basic TAGENE ; transcript_id "TMC5--AC002331.1^ENST00000661508.1" ; transcript_name "AC002331.1-201" ; transcript_type lncRNA
L1 and L2 created:
TMC5--AC009035.1 HAVANA gene 32738 34454 . + . FI_gene_label "AC009035.1^ENSG00000260580.1" ; ID "TMC5--AC009035.1^AC009035.1^ENSG00000260580.1" ; exon_id "ENSE00002621057.1" ; exon_number 1 ; gene_id "TMC5--AC009035.1^AC009035.1^ENSG00000260580.1" ; gene_name "AC009035.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177033.1" ; havana_transcript "OTTHUMT00000434960.1" ; level 2 ; orig_coord_info "chr16,26721874,26722223,+" ; tag basic ; transcript_id "TMC5--AC009035.1^ENST00000562900.1" ; transcript_name "AC009035.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
TMC5--AC009035.1 HAVANA RNA 32738 34454 . + . FI_gene_label "AC009035.1^ENSG00000260580.1" ; ID "TMC5--AC009035.1^ENST00000562900.1" ; Parent "TMC5--AC009035.1^AC009035.1^ENSG00000260580.1" ; exon_id "ENSE00002621057.1" ; exon_number 1 ; gene_id "TMC5--AC009035.1^AC009035.1^ENSG00000260580.1" ; gene_name "AC009035.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177033.1" ; havana_transcript "OTTHUMT00000434960.1" ; level 2 ; orig_coord_info "chr16,26721874,26722223,+" ; tag basic ; transcript_id "TMC5--AC009035.1^ENST00000562900.1" ; transcript_name "AC009035.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
UPK3B--AC211476.4 HAVANA gene 9798 14672 . + . FI_gene_label "AC211476.4^ENSG00000277125.1" ; ID "UPK3B--AC211476.4^AC211476.4^ENSG00000277125.1" ; exon_id "ENSE00001414173.3" ; exon_number 1 ; gene_id "UPK3B--AC211476.4^AC211476.4^ENSG00000277125.1" ; gene_name "AC211476.4" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188241.2" ; havana_transcript "OTTHUMT00000476739.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73065529,73065670,+" ; tag basic ; transcript_id "UPK3B--AC211476.4^ENST00000275546.4" ; transcript_name "AC211476.4-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
UPK3B--AC211476.4 HAVANA RNA 9798 14672 . + . FI_gene_label "AC211476.4^ENSG00000277125.1" ; ID "UPK3B--AC211476.4^ENST00000275546.4" ; Parent "UPK3B--AC211476.4^AC211476.4^ENSG00000277125.1" ; exon_id "ENSE00001414173.3" ; exon_number 1 ; gene_id "UPK3B--AC211476.4^AC211476.4^ENSG00000277125.1" ; gene_name "AC211476.4" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188241.2" ; havana_transcript "OTTHUMT00000476739.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73065529,73065670,+" ; tag basic ; transcript_id "UPK3B--AC211476.4^ENST00000275546.4" ; transcript_name "AC211476.4-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
ZCCHC7--BX255923.2 HAVANA gene 23473 31530 . + . FI_gene_label "BX255923.2^ENSG00000276462.2" ; ID "ZCCHC7--BX255923.2^BX255923.2^ENSG00000276462.2" ; exon_id "ENSE00003851567.1" ; exon_number 1 ; gene_id "ZCCHC7--BX255923.2^BX255923.2^ENSG00000276462.2" ; gene_name "BX255923.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000188616.7" ; havana_transcript "OTTHUMT00000478020.3" ; level 2 ; orig_coord_info "chr9,41109276,41109434,-" ; tag TAGENE ; transcript_id "ZCCHC7--BX255923.2^ENST00000619971.2" ; transcript_name "BX255923.2-201" ; transcript_support_level 5 ; transcript_type lncRNA
ZCCHC7--BX255923.2 HAVANA RNA 23473 31530 . + . FI_gene_label "BX255923.2^ENSG00000276462.2" ; ID "ZCCHC7--BX255923.2^ENST00000619971.2" ; Parent "ZCCHC7--BX255923.2^BX255923.2^ENSG00000276462.2" ; exon_id "ENSE00003851567.1" ; exon_number 1 ; gene_id "ZCCHC7--BX255923.2^BX255923.2^ENSG00000276462.2" ; gene_name "BX255923.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000188616.7" ; havana_transcript "OTTHUMT00000478020.3" ; level 2 ; orig_coord_info "chr9,41109276,41109434,-" ; tag TAGENE ; transcript_id "ZCCHC7--BX255923.2^ENST00000619971.2" ; transcript_name "BX255923.2-201" ; transcript_support_level 5 ; transcript_type lncRNA
964 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 1 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1842 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 87 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed