Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/3243ec3aa229936f9d97ea86dae11b/659_bCu-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/30eb8595640b82663fdfc8c60cb295/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/30eb8595640b82663fdfc8c60cb295/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/e4b6bb64305bfbe210bc6de3e33c24/659_bCu-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bCu-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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