Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/36ccf6849dbd67c8057259b9dcc957/659_eeB-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/66a4ada989c62cf795eb1093ce368c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/66a4ada989c62cf795eb1093ce368c/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory