Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/dcd09a12f135721be4675d0e0be5ae/659_8h-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/81b05b438d0bf2fa4c44ce58edc536/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/81b05b438d0bf2fa4c44ce58edc536/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory