Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/c22754b74d3e7274d9e670d7ea02b5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/c22754b74d3e7274d9e670d7ea02b5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/e955bb1eb3f36201ab882905d78ea6/659_b4x-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/38f613398bb98d0c78bf28614199fa/659_b4x-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_b4x-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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