Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/2a8c36de8949424c82fcd60da70774/659_bR4-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/2a3a5ddfac60d06c961e6a72d4eadb/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/2a3a5ddfac60d06c961e6a72d4eadb/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/d7386581eebc9f8a368c326f54dd7c/659_bR4-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
0%| | 0/66 [00:00<?, ?it/s]DOCK9--SERPINE2
starfusion
arriba
R3HDM1--RNF144A
starfusion
arriba
EML4--ALK
starfusion
arriba
GFPT1--ENOX2
starfusion
arriba
MRPS21--APH1A
starfusion
arriba
BCL2--ZNF521
starfusion
arriba
ZNF92--TDRD9
starfusion
arriba
MGAT4A--SNRNP200
starfusion
arriba
PLCL1--GULP1
starfusion
arriba
ZNF680--TMEM248
starfusion
arriba
RMND5A--KDM3A
starfusion
arriba
TLK2--AL669831.1
starfusion
TYW1--ZNF138
starfusion
arriba
RUNDC3B--ADAM22
starfusion
ATP11A--STK26
starfusion
TLK2P1--AC110079.1
starfusion
AC091132.4--AC103810.6
starfusion
PTPN20--BMS1P7
starfusion
KDM3A--TOP1
starfusion
PPP2R2B--GLS
starfusion
FBXO25--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
ROCK2--ZNF385B
arriba
KDM5C--KMT2C
arriba
DTNB--SERPINE2
arriba
DTNB--USP21P1
arriba
PCDHGA1--PCDHGA8
arriba
PCDHGA1--PCDHGA9
arriba
PCDHGA1--PCDHGB6
arriba
PCDHGA1--PCDHGA10
arriba
PCDHGA1--PCDHGB7
arriba
PCDHGA1--PCDHGA11
arriba
PCDHGA1--PCDHGA12
arriba
PCDHGA1--PCDHGC3
arriba
PCDHGA1--PCDHGC4
arriba
PCDHGA1--PCDHGC5
arriba
AC015911.9--SLFN12L
arriba
TVP23C--CDRT4
arriba
SLFN11--SLFN12
arriba
IGFL1P2--HIF3A
arriba
PPP1R13B--ZNF138
arriba
MED14--PRRG1
arriba
MED14--FTH1P19
arriba
TDRD9--ZNF107
arriba
PARP8--LINC00276
arriba
ORC2--AC068196.1
arriba
LINC01654--IGSF21
arriba
IGSF21--IGSF21
arriba
MED14--FTH1P27
arriba
AC217774.2--CRHR1
arriba
CRHR1--CRHR1
arriba
ZNF521--ZNF521
arriba
ZNF521--RN7SL97P
arriba
KLRC4--KLRK1
arriba
ZNF92--RNU6-1254P
arriba
ZNF92--LINC02604
arriba
RNF144A--AC068725.1
arriba
AL512590.2--CCDC180
arriba
AC007785.3--IGFL2
arriba
LINC02210--CRHR1
arriba
AC217774.1--CRHR1
arriba
LRCH2--SPANXN1
arriba
LRCH2--TRMT1P1
arriba
PMS2P6--CCDC146
arriba
SLC25A12--AC092623.1
arriba
SLC25A12--MGAT5
arriba
Processing DOCK9--SERPINE2: 0%| | 0/66 [00:00<?, ?it/s]
Processing DOCK9--SERPINE2: 2%|▏ | 1/66 [00:00<00:07, 9.22it/s]
Processing R3HDM1--RNF144A: 2%|▏ | 1/66 [00:00<00:07, 9.22it/s]
Processing R3HDM1--RNF144A: 3%|▎ | 2/66 [00:00<00:06, 9.46it/s]
Processing EML4--ALK: 3%|▎ | 2/66 [00:00<00:06, 9.46it/s]
Processing EML4--ALK: 5%|▍ | 3/66 [00:00<00:06, 9.54it/s]
Processing GFPT1--ENOX2: 5%|▍ | 3/66 [00:00<00:06, 9.54it/s]
Processing GFPT1--ENOX2: 6%|▌ | 4/66 [00:00<00:06, 9.58it/s]
Processing MRPS21--APH1A: 6%|▌ | 4/66 [00:00<00:06, 9.58it/s]
Processing MRPS21--APH1A: 8%|▊ | 5/66 [00:00<00:06, 9.59it/s]
Processing BCL2--ZNF521: 8%|▊ | 5/66 [00:00<00:06, 9.59it/s]
Processing BCL2--ZNF521: 9%|▉ | 6/66 [00:00<00:06, 9.61it/s]
Processing ZNF92--TDRD9: 9%|▉ | 6/66 [00:00<00:06, 9.61it/s]
Processing ZNF92--TDRD9: 11%|█ | 7/66 [00:00<00:06, 9.62it/s]
Processing MGAT4A--SNRNP200: 11%|█ | 7/66 [00:00<00:06, 9.62it/s]
Processing MGAT4A--SNRNP200: 12%|█▏ | 8/66 [00:00<00:06, 9.63it/s]
Processing PLCL1--GULP1: 12%|█▏ | 8/66 [00:00<00:06, 9.63it/s]
Processing PLCL1--GULP1: 14%|█▎ | 9/66 [00:00<00:05, 9.63it/s]
Processing ZNF680--TMEM248: 14%|█▎ | 9/66 [00:00<00:05, 9.63it/s]
Processing ZNF680--TMEM248: 15%|█▌ | 10/66 [00:01<00:05, 9.63it/s]
Processing RMND5A--KDM3A: 15%|█▌ | 10/66 [00:01<00:05, 9.63it/s]
Processing RMND5A--KDM3A: 17%|█▋ | 11/66 [00:01<00:05, 9.64it/s]
Processing TLK2--AL669831.1: 17%|█▋ | 11/66 [00:01<00:05, 9.64it/s]
Processing TLK2--AL669831.1: 18%|█▊ | 12/66 [00:01<00:05, 9.64it/s]
Processing TYW1--ZNF138: 18%|█▊ | 12/66 [00:01<00:05, 9.64it/s]
Processing TYW1--ZNF138: 20%|█▉ | 13/66 [00:01<00:05, 9.63it/s]
Processing RUNDC3B--ADAM22: 20%|█▉ | 13/66 [00:01<00:05, 9.63it/s]
Processing RUNDC3B--ADAM22: 21%|██ | 14/66 [00:01<00:05, 9.63it/s]
Processing ATP11A--STK26: 21%|██ | 14/66 [00:01<00:05, 9.63it/s]
Processing ATP11A--STK26: 23%|██▎ | 15/66 [00:01<00:05, 9.62it/s]
Processing TLK2P1--AC110079.1: 23%|██▎ | 15/66 [00:01<00:05, 9.62it/s]
Processing TLK2P1--AC110079.1: 24%|██▍ | 16/66 [00:01<00:05, 9.63it/s]
Processing AC091132.4--AC103810.6: 24%|██▍ | 16/66 [00:01<00:05, 9.63it/s]
Processing AC091132.4--AC103810.6: 26%|██▌ | 17/66 [00:01<00:05, 9.63it/s]
Processing PTPN20--BMS1P7: 26%|██▌ | 17/66 [00:01<00:05, 9.63it/s]
Processing PTPN20--BMS1P7: 27%|██▋ | 18/66 [00:01<00:04, 9.63it/s]
Processing KDM3A--TOP1: 27%|██▋ | 18/66 [00:01<00:04, 9.63it/s]
Processing KDM3A--TOP1: 29%|██▉ | 19/66 [00:01<00:04, 9.64it/s]
Processing PPP2R2B--GLS: 29%|██▉ | 19/66 [00:01<00:04, 9.64it/s]
Processing PPP2R2B--GLS: 30%|███ | 20/66 [00:02<00:04, 9.64it/s]
Processing FBXO25--AC240565.1: 30%|███ | 20/66 [00:02<00:04, 9.64it/s]
Processing FBXO25--AC240565.1: 32%|███▏ | 21/66 [00:02<00:04, 9.64it/s]
Processing STX16--NPEPL1: 32%|███▏ | 21/66 [00:02<00:04, 9.64it/s]
Processing STX16--NPEPL1: 33%|███▎ | 22/66 [00:02<00:04, 9.64it/s]
Processing ROCK2--ZNF385B: 33%|███▎ | 22/66 [00:02<00:04, 9.64it/s]
Processing ROCK2--ZNF385B: 35%|███▍ | 23/66 [00:02<00:04, 9.64it/s]
Processing KDM5C--KMT2C: 35%|███▍ | 23/66 [00:02<00:04, 9.64it/s]
Processing KDM5C--KMT2C: 36%|███▋ | 24/66 [00:02<00:04, 9.64it/s]
Processing DTNB--SERPINE2: 36%|███▋ | 24/66 [00:02<00:04, 9.64it/s]
Processing DTNB--SERPINE2: 38%|███▊ | 25/66 [00:02<00:04, 9.63it/s]
Processing DTNB--USP21P1: 38%|███▊ | 25/66 [00:02<00:04, 9.63it/s]
Processing DTNB--USP21P1: 39%|███▉ | 26/66 [00:02<00:04, 9.63it/s]
Processing PCDHGA1--PCDHGA8: 39%|███▉ | 26/66 [00:02<00:04, 9.63it/s]
Processing PCDHGA1--PCDHGA8: 41%|████ | 27/66 [00:02<00:04, 9.64it/s]
Processing PCDHGA1--PCDHGA9: 41%|████ | 27/66 [00:02<00:04, 9.64it/s]
Processing PCDHGA1--PCDHGA9: 42%|████▏ | 28/66 [00:02<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGB6: 42%|████▏ | 28/66 [00:02<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGB6: 44%|████▍ | 29/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGA10: 44%|████▍ | 29/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGA10: 45%|████▌ | 30/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGB7: 45%|████▌ | 30/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGB7: 47%|████▋ | 31/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGA11: 47%|████▋ | 31/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGA11: 48%|████▊ | 32/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGA12: 48%|████▊ | 32/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGA12: 50%|█████ | 33/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGC3: 50%|█████ | 33/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGC3: 52%|█████▏ | 34/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGC4: 52%|█████▏ | 34/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGC4: 53%|█████▎ | 35/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGC5: 53%|█████▎ | 35/66 [00:03<00:03, 9.64it/s]
Processing PCDHGA1--PCDHGC5: 55%|█████▍ | 36/66 [00:03<00:03, 9.64it/s]
Processing AC015911.9--SLFN12L: 55%|█████▍ | 36/66 [00:03<00:03, 9.64it/s]
Processing AC015911.9--SLFN12L: 56%|█████▌ | 37/66 [00:03<00:03, 9.64it/s]
Processing TVP23C--CDRT4: 56%|█████▌ | 37/66 [00:03<00:03, 9.64it/s]
Processing TVP23C--CDRT4: 58%|█████▊ | 38/66 [00:03<00:02, 9.64it/s]
Processing SLFN11--SLFN12: 58%|█████▊ | 38/66 [00:03<00:02, 9.64it/s]
Processing SLFN11--SLFN12: 59%|█████▉ | 39/66 [00:04<00:02, 9.64it/s]
Processing IGFL1P2--HIF3A: 59%|█████▉ | 39/66 [00:04<00:02, 9.64it/s]
Processing IGFL1P2--HIF3A: 61%|██████ | 40/66 [00:04<00:02, 9.64it/s]
Processing PPP1R13B--ZNF138: 61%|██████ | 40/66 [00:04<00:02, 9.64it/s]
Processing PPP1R13B--ZNF138: 62%|██████▏ | 41/66 [00:04<00:02, 9.64it/s]
Processing MED14--PRRG1: 62%|██████▏ | 41/66 [00:04<00:02, 9.64it/s]
Processing MED14--PRRG1: 64%|██████▎ | 42/66 [00:04<00:02, 9.64it/s]
Processing MED14--FTH1P19: 64%|██████▎ | 42/66 [00:04<00:02, 9.64it/s]
Processing MED14--FTH1P19: 65%|██████▌ | 43/66 [00:04<00:02, 9.64it/s]
Processing TDRD9--ZNF107: 65%|██████▌ | 43/66 [00:04<00:02, 9.64it/s]
Processing TDRD9--ZNF107: 67%|██████▋ | 44/66 [00:04<00:02, 9.64it/s]
Processing PARP8--LINC00276: 67%|██████▋ | 44/66 [00:04<00:02, 9.64it/s]
Processing PARP8--LINC00276: 68%|██████▊ | 45/66 [00:04<00:02, 9.64it/s]
Processing ORC2--AC068196.1: 68%|██████▊ | 45/66 [00:04<00:02, 9.64it/s]
Processing ORC2--AC068196.1: 70%|██████▉ | 46/66 [00:04<00:02, 9.64it/s]
Processing LINC01654--IGSF21: 70%|██████▉ | 46/66 [00:04<00:02, 9.64it/s]
Processing LINC01654--IGSF21: 71%|███████ | 47/66 [00:04<00:01, 9.64it/s]
Processing IGSF21--IGSF21: 71%|███████ | 47/66 [00:04<00:01, 9.64it/s]
Processing IGSF21--IGSF21: 73%|███████▎ | 48/66 [00:04<00:01, 9.64it/s]
Processing MED14--FTH1P27: 73%|███████▎ | 48/66 [00:04<00:01, 9.64it/s]
Processing MED14--FTH1P27: 74%|███████▍ | 49/66 [00:05<00:01, 9.64it/s]
Processing AC217774.2--CRHR1: 74%|███████▍ | 49/66 [00:05<00:01, 9.64it/s]
Processing AC217774.2--CRHR1: 76%|███████▌ | 50/66 [00:05<00:01, 9.64it/s]
Processing CRHR1--CRHR1: 76%|███████▌ | 50/66 [00:05<00:01, 9.64it/s]
Processing CRHR1--CRHR1: 77%|███████▋ | 51/66 [00:05<00:01, 9.64it/s]
Processing ZNF521--ZNF521: 77%|███████▋ | 51/66 [00:05<00:01, 9.64it/s]
Processing ZNF521--ZNF521: 79%|███████▉ | 52/66 [00:05<00:01, 9.63it/s]
Processing ZNF521--RN7SL97P: 79%|███████▉ | 52/66 [00:05<00:01, 9.63it/s]
Processing ZNF521--RN7SL97P: 80%|████████ | 53/66 [00:05<00:01, 9.63it/s]
Processing KLRC4--KLRK1: 80%|████████ | 53/66 [00:05<00:01, 9.63it/s]
Processing KLRC4--KLRK1: 82%|████████▏ | 54/66 [00:05<00:01, 9.64it/s]
Processing ZNF92--RNU6-1254P: 82%|████████▏ | 54/66 [00:05<00:01, 9.64it/s]
Processing ZNF92--RNU6-1254P: 83%|████████▎ | 55/66 [00:05<00:01, 9.63it/s]
Processing ZNF92--LINC02604: 83%|████████▎ | 55/66 [00:05<00:01, 9.63it/s]
Processing ZNF92--LINC02604: 85%|████████▍ | 56/66 [00:05<00:01, 9.64it/s]
Processing RNF144A--AC068725.1: 85%|████████▍ | 56/66 [00:05<00:01, 9.64it/s]
Processing RNF144A--AC068725.1: 86%|████████▋ | 57/66 [00:05<00:00, 9.64it/s]
Processing AL512590.2--CCDC180: 86%|████████▋ | 57/66 [00:05<00:00, 9.64it/s]
Processing AL512590.2--CCDC180: 88%|████████▊ | 58/66 [00:06<00:00, 9.64it/s]
Processing AC007785.3--IGFL2: 88%|████████▊ | 58/66 [00:06<00:00, 9.64it/s]
Processing AC007785.3--IGFL2: 89%|████████▉ | 59/66 [00:06<00:00, 9.64it/s]
Processing LINC02210--CRHR1: 89%|████████▉ | 59/66 [00:06<00:00, 9.64it/s]
Processing LINC02210--CRHR1: 91%|█████████ | 60/66 [00:06<00:00, 9.64it/s]
Processing AC217774.1--CRHR1: 91%|█████████ | 60/66 [00:06<00:00, 9.64it/s]
Processing AC217774.1--CRHR1: 92%|█████████▏| 61/66 [00:06<00:00, 9.64it/s]
Processing LRCH2--SPANXN1: 92%|█████████▏| 61/66 [00:06<00:00, 9.64it/s]
Processing LRCH2--SPANXN1: 94%|█████████▍| 62/66 [00:06<00:00, 9.64it/s]
Processing LRCH2--TRMT1P1: 94%|█████████▍| 62/66 [00:06<00:00, 9.64it/s]
Processing LRCH2--TRMT1P1: 95%|█████████▌| 63/66 [00:06<00:00, 9.64it/s]
Processing PMS2P6--CCDC146: 95%|█████████▌| 63/66 [00:06<00:00, 9.64it/s]
Processing PMS2P6--CCDC146: 97%|█████████▋| 64/66 [00:06<00:00, 9.64it/s]
Processing SLC25A12--AC092623.1: 97%|█████████▋| 64/66 [00:06<00:00, 9.64it/s]
Processing SLC25A12--AC092623.1: 98%|█████████▊| 65/66 [00:06<00:00, 9.64it/s]
Processing SLC25A12--MGAT5: 98%|█████████▊| 65/66 [00:06<00:00, 9.64it/s]
Processing SLC25A12--MGAT5: 100%|██████████| 66/66 [00:06<00:00, 9.64it/s]
Processing SLC25A12--MGAT5: 100%|██████████| 66/66 [00:06<00:00, 9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory