Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/2a8c36de8949424c82fcd60da70774/659_bR4-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/2a3a5ddfac60d06c961e6a72d4eadb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/2a3a5ddfac60d06c961e6a72d4eadb/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/d7386581eebc9f8a368c326f54dd7c/659_bR4-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/66 [00:00<?, ?it/s]DOCK9--SERPINE2
starfusion
arriba
R3HDM1--RNF144A
starfusion
arriba
EML4--ALK
starfusion
arriba
GFPT1--ENOX2
starfusion
arriba
MRPS21--APH1A
starfusion
arriba
BCL2--ZNF521
starfusion
arriba
ZNF92--TDRD9
starfusion
arriba
MGAT4A--SNRNP200
starfusion
arriba
PLCL1--GULP1
starfusion
arriba
ZNF680--TMEM248
starfusion
arriba
RMND5A--KDM3A
starfusion
arriba
TLK2--AL669831.1
starfusion
TYW1--ZNF138
starfusion
arriba
RUNDC3B--ADAM22
starfusion
ATP11A--STK26
starfusion
TLK2P1--AC110079.1
starfusion
AC091132.4--AC103810.6
starfusion
PTPN20--BMS1P7
starfusion
KDM3A--TOP1
starfusion
PPP2R2B--GLS
starfusion
FBXO25--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
ROCK2--ZNF385B
arriba
KDM5C--KMT2C
arriba
DTNB--SERPINE2
arriba
DTNB--USP21P1
arriba
PCDHGA1--PCDHGA8
arriba
PCDHGA1--PCDHGA9
arriba
PCDHGA1--PCDHGB6
arriba
PCDHGA1--PCDHGA10
arriba
PCDHGA1--PCDHGB7
arriba
PCDHGA1--PCDHGA11
arriba
PCDHGA1--PCDHGA12
arriba
PCDHGA1--PCDHGC3
arriba
PCDHGA1--PCDHGC4
arriba
PCDHGA1--PCDHGC5
arriba
AC015911.9--SLFN12L
arriba
TVP23C--CDRT4
arriba
SLFN11--SLFN12
arriba
IGFL1P2--HIF3A
arriba
PPP1R13B--ZNF138
arriba
MED14--PRRG1
arriba
MED14--FTH1P19
arriba
TDRD9--ZNF107
arriba
PARP8--LINC00276
arriba
ORC2--AC068196.1
arriba
LINC01654--IGSF21
arriba
IGSF21--IGSF21
arriba
MED14--FTH1P27
arriba
AC217774.2--CRHR1
arriba
CRHR1--CRHR1
arriba
ZNF521--ZNF521
arriba
ZNF521--RN7SL97P
arriba
KLRC4--KLRK1
arriba
ZNF92--RNU6-1254P
arriba
ZNF92--LINC02604
arriba
RNF144A--AC068725.1
arriba
AL512590.2--CCDC180
arriba
AC007785.3--IGFL2
arriba
LINC02210--CRHR1
arriba
AC217774.1--CRHR1
arriba
LRCH2--SPANXN1
arriba
LRCH2--TRMT1P1
arriba
PMS2P6--CCDC146
arriba
SLC25A12--AC092623.1
arriba
SLC25A12--MGAT5
arriba

Processing DOCK9--SERPINE2:   0%|          | 0/66 [00:00<?, ?it/s]
Processing DOCK9--SERPINE2:   2%|▏         | 1/66 [00:00<00:07,  9.22it/s]
Processing R3HDM1--RNF144A:   2%|▏         | 1/66 [00:00<00:07,  9.22it/s]
Processing R3HDM1--RNF144A:   3%|▎         | 2/66 [00:00<00:06,  9.46it/s]
Processing EML4--ALK:   3%|▎         | 2/66 [00:00<00:06,  9.46it/s]      
Processing EML4--ALK:   5%|▍         | 3/66 [00:00<00:06,  9.54it/s]
Processing GFPT1--ENOX2:   5%|▍         | 3/66 [00:00<00:06,  9.54it/s]
Processing GFPT1--ENOX2:   6%|▌         | 4/66 [00:00<00:06,  9.58it/s]
Processing MRPS21--APH1A:   6%|▌         | 4/66 [00:00<00:06,  9.58it/s]
Processing MRPS21--APH1A:   8%|▊         | 5/66 [00:00<00:06,  9.59it/s]
Processing BCL2--ZNF521:   8%|▊         | 5/66 [00:00<00:06,  9.59it/s] 
Processing BCL2--ZNF521:   9%|▉         | 6/66 [00:00<00:06,  9.61it/s]
Processing ZNF92--TDRD9:   9%|▉         | 6/66 [00:00<00:06,  9.61it/s]
Processing ZNF92--TDRD9:  11%|█         | 7/66 [00:00<00:06,  9.62it/s]
Processing MGAT4A--SNRNP200:  11%|█         | 7/66 [00:00<00:06,  9.62it/s]
Processing MGAT4A--SNRNP200:  12%|█▏        | 8/66 [00:00<00:06,  9.63it/s]
Processing PLCL1--GULP1:  12%|█▏        | 8/66 [00:00<00:06,  9.63it/s]    
Processing PLCL1--GULP1:  14%|█▎        | 9/66 [00:00<00:05,  9.63it/s]
Processing ZNF680--TMEM248:  14%|█▎        | 9/66 [00:00<00:05,  9.63it/s]
Processing ZNF680--TMEM248:  15%|█▌        | 10/66 [00:01<00:05,  9.63it/s]
Processing RMND5A--KDM3A:  15%|█▌        | 10/66 [00:01<00:05,  9.63it/s]  
Processing RMND5A--KDM3A:  17%|█▋        | 11/66 [00:01<00:05,  9.64it/s]
Processing TLK2--AL669831.1:  17%|█▋        | 11/66 [00:01<00:05,  9.64it/s]
Processing TLK2--AL669831.1:  18%|█▊        | 12/66 [00:01<00:05,  9.64it/s]
Processing TYW1--ZNF138:  18%|█▊        | 12/66 [00:01<00:05,  9.64it/s]    
Processing TYW1--ZNF138:  20%|█▉        | 13/66 [00:01<00:05,  9.63it/s]
Processing RUNDC3B--ADAM22:  20%|█▉        | 13/66 [00:01<00:05,  9.63it/s]
Processing RUNDC3B--ADAM22:  21%|██        | 14/66 [00:01<00:05,  9.63it/s]
Processing ATP11A--STK26:  21%|██        | 14/66 [00:01<00:05,  9.63it/s]  
Processing ATP11A--STK26:  23%|██▎       | 15/66 [00:01<00:05,  9.62it/s]
Processing TLK2P1--AC110079.1:  23%|██▎       | 15/66 [00:01<00:05,  9.62it/s]
Processing TLK2P1--AC110079.1:  24%|██▍       | 16/66 [00:01<00:05,  9.63it/s]
Processing AC091132.4--AC103810.6:  24%|██▍       | 16/66 [00:01<00:05,  9.63it/s]
Processing AC091132.4--AC103810.6:  26%|██▌       | 17/66 [00:01<00:05,  9.63it/s]
Processing PTPN20--BMS1P7:  26%|██▌       | 17/66 [00:01<00:05,  9.63it/s]        
Processing PTPN20--BMS1P7:  27%|██▋       | 18/66 [00:01<00:04,  9.63it/s]
Processing KDM3A--TOP1:  27%|██▋       | 18/66 [00:01<00:04,  9.63it/s]   
Processing KDM3A--TOP1:  29%|██▉       | 19/66 [00:01<00:04,  9.64it/s]
Processing PPP2R2B--GLS:  29%|██▉       | 19/66 [00:01<00:04,  9.64it/s]
Processing PPP2R2B--GLS:  30%|███       | 20/66 [00:02<00:04,  9.64it/s]
Processing FBXO25--AC240565.1:  30%|███       | 20/66 [00:02<00:04,  9.64it/s]
Processing FBXO25--AC240565.1:  32%|███▏      | 21/66 [00:02<00:04,  9.64it/s]
Processing STX16--NPEPL1:  32%|███▏      | 21/66 [00:02<00:04,  9.64it/s]     
Processing STX16--NPEPL1:  33%|███▎      | 22/66 [00:02<00:04,  9.64it/s]
Processing ROCK2--ZNF385B:  33%|███▎      | 22/66 [00:02<00:04,  9.64it/s]
Processing ROCK2--ZNF385B:  35%|███▍      | 23/66 [00:02<00:04,  9.64it/s]
Processing KDM5C--KMT2C:  35%|███▍      | 23/66 [00:02<00:04,  9.64it/s]  
Processing KDM5C--KMT2C:  36%|███▋      | 24/66 [00:02<00:04,  9.64it/s]
Processing DTNB--SERPINE2:  36%|███▋      | 24/66 [00:02<00:04,  9.64it/s]
Processing DTNB--SERPINE2:  38%|███▊      | 25/66 [00:02<00:04,  9.63it/s]
Processing DTNB--USP21P1:  38%|███▊      | 25/66 [00:02<00:04,  9.63it/s] 
Processing DTNB--USP21P1:  39%|███▉      | 26/66 [00:02<00:04,  9.63it/s]
Processing PCDHGA1--PCDHGA8:  39%|███▉      | 26/66 [00:02<00:04,  9.63it/s]
Processing PCDHGA1--PCDHGA8:  41%|████      | 27/66 [00:02<00:04,  9.64it/s]
Processing PCDHGA1--PCDHGA9:  41%|████      | 27/66 [00:02<00:04,  9.64it/s]
Processing PCDHGA1--PCDHGA9:  42%|████▏     | 28/66 [00:02<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGB6:  42%|████▏     | 28/66 [00:02<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGB6:  44%|████▍     | 29/66 [00:03<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGA10:  44%|████▍     | 29/66 [00:03<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGA10:  45%|████▌     | 30/66 [00:03<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGB7:  45%|████▌     | 30/66 [00:03<00:03,  9.64it/s] 
Processing PCDHGA1--PCDHGB7:  47%|████▋     | 31/66 [00:03<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGA11:  47%|████▋     | 31/66 [00:03<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGA11:  48%|████▊     | 32/66 [00:03<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGA12:  48%|████▊     | 32/66 [00:03<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGA12:  50%|█████     | 33/66 [00:03<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGC3:  50%|█████     | 33/66 [00:03<00:03,  9.64it/s] 
Processing PCDHGA1--PCDHGC3:  52%|█████▏    | 34/66 [00:03<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGC4:  52%|█████▏    | 34/66 [00:03<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGC4:  53%|█████▎    | 35/66 [00:03<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGC5:  53%|█████▎    | 35/66 [00:03<00:03,  9.64it/s]
Processing PCDHGA1--PCDHGC5:  55%|█████▍    | 36/66 [00:03<00:03,  9.64it/s]
Processing AC015911.9--SLFN12L:  55%|█████▍    | 36/66 [00:03<00:03,  9.64it/s]
Processing AC015911.9--SLFN12L:  56%|█████▌    | 37/66 [00:03<00:03,  9.64it/s]
Processing TVP23C--CDRT4:  56%|█████▌    | 37/66 [00:03<00:03,  9.64it/s]      
Processing TVP23C--CDRT4:  58%|█████▊    | 38/66 [00:03<00:02,  9.64it/s]
Processing SLFN11--SLFN12:  58%|█████▊    | 38/66 [00:03<00:02,  9.64it/s]
Processing SLFN11--SLFN12:  59%|█████▉    | 39/66 [00:04<00:02,  9.64it/s]
Processing IGFL1P2--HIF3A:  59%|█████▉    | 39/66 [00:04<00:02,  9.64it/s]
Processing IGFL1P2--HIF3A:  61%|██████    | 40/66 [00:04<00:02,  9.64it/s]
Processing PPP1R13B--ZNF138:  61%|██████    | 40/66 [00:04<00:02,  9.64it/s]
Processing PPP1R13B--ZNF138:  62%|██████▏   | 41/66 [00:04<00:02,  9.64it/s]
Processing MED14--PRRG1:  62%|██████▏   | 41/66 [00:04<00:02,  9.64it/s]    
Processing MED14--PRRG1:  64%|██████▎   | 42/66 [00:04<00:02,  9.64it/s]
Processing MED14--FTH1P19:  64%|██████▎   | 42/66 [00:04<00:02,  9.64it/s]
Processing MED14--FTH1P19:  65%|██████▌   | 43/66 [00:04<00:02,  9.64it/s]
Processing TDRD9--ZNF107:  65%|██████▌   | 43/66 [00:04<00:02,  9.64it/s] 
Processing TDRD9--ZNF107:  67%|██████▋   | 44/66 [00:04<00:02,  9.64it/s]
Processing PARP8--LINC00276:  67%|██████▋   | 44/66 [00:04<00:02,  9.64it/s]
Processing PARP8--LINC00276:  68%|██████▊   | 45/66 [00:04<00:02,  9.64it/s]
Processing ORC2--AC068196.1:  68%|██████▊   | 45/66 [00:04<00:02,  9.64it/s]
Processing ORC2--AC068196.1:  70%|██████▉   | 46/66 [00:04<00:02,  9.64it/s]
Processing LINC01654--IGSF21:  70%|██████▉   | 46/66 [00:04<00:02,  9.64it/s]
Processing LINC01654--IGSF21:  71%|███████   | 47/66 [00:04<00:01,  9.64it/s]
Processing IGSF21--IGSF21:  71%|███████   | 47/66 [00:04<00:01,  9.64it/s]   
Processing IGSF21--IGSF21:  73%|███████▎  | 48/66 [00:04<00:01,  9.64it/s]
Processing MED14--FTH1P27:  73%|███████▎  | 48/66 [00:04<00:01,  9.64it/s]
Processing MED14--FTH1P27:  74%|███████▍  | 49/66 [00:05<00:01,  9.64it/s]
Processing AC217774.2--CRHR1:  74%|███████▍  | 49/66 [00:05<00:01,  9.64it/s]
Processing AC217774.2--CRHR1:  76%|███████▌  | 50/66 [00:05<00:01,  9.64it/s]
Processing CRHR1--CRHR1:  76%|███████▌  | 50/66 [00:05<00:01,  9.64it/s]     
Processing CRHR1--CRHR1:  77%|███████▋  | 51/66 [00:05<00:01,  9.64it/s]
Processing ZNF521--ZNF521:  77%|███████▋  | 51/66 [00:05<00:01,  9.64it/s]
Processing ZNF521--ZNF521:  79%|███████▉  | 52/66 [00:05<00:01,  9.63it/s]
Processing ZNF521--RN7SL97P:  79%|███████▉  | 52/66 [00:05<00:01,  9.63it/s]
Processing ZNF521--RN7SL97P:  80%|████████  | 53/66 [00:05<00:01,  9.63it/s]
Processing KLRC4--KLRK1:  80%|████████  | 53/66 [00:05<00:01,  9.63it/s]    
Processing KLRC4--KLRK1:  82%|████████▏ | 54/66 [00:05<00:01,  9.64it/s]
Processing ZNF92--RNU6-1254P:  82%|████████▏ | 54/66 [00:05<00:01,  9.64it/s]
Processing ZNF92--RNU6-1254P:  83%|████████▎ | 55/66 [00:05<00:01,  9.63it/s]
Processing ZNF92--LINC02604:  83%|████████▎ | 55/66 [00:05<00:01,  9.63it/s] 
Processing ZNF92--LINC02604:  85%|████████▍ | 56/66 [00:05<00:01,  9.64it/s]
Processing RNF144A--AC068725.1:  85%|████████▍ | 56/66 [00:05<00:01,  9.64it/s]
Processing RNF144A--AC068725.1:  86%|████████▋ | 57/66 [00:05<00:00,  9.64it/s]
Processing AL512590.2--CCDC180:  86%|████████▋ | 57/66 [00:05<00:00,  9.64it/s]
Processing AL512590.2--CCDC180:  88%|████████▊ | 58/66 [00:06<00:00,  9.64it/s]
Processing AC007785.3--IGFL2:  88%|████████▊ | 58/66 [00:06<00:00,  9.64it/s]  
Processing AC007785.3--IGFL2:  89%|████████▉ | 59/66 [00:06<00:00,  9.64it/s]
Processing LINC02210--CRHR1:  89%|████████▉ | 59/66 [00:06<00:00,  9.64it/s] 
Processing LINC02210--CRHR1:  91%|█████████ | 60/66 [00:06<00:00,  9.64it/s]
Processing AC217774.1--CRHR1:  91%|█████████ | 60/66 [00:06<00:00,  9.64it/s]
Processing AC217774.1--CRHR1:  92%|█████████▏| 61/66 [00:06<00:00,  9.64it/s]
Processing LRCH2--SPANXN1:  92%|█████████▏| 61/66 [00:06<00:00,  9.64it/s]   
Processing LRCH2--SPANXN1:  94%|█████████▍| 62/66 [00:06<00:00,  9.64it/s]
Processing LRCH2--TRMT1P1:  94%|█████████▍| 62/66 [00:06<00:00,  9.64it/s]
Processing LRCH2--TRMT1P1:  95%|█████████▌| 63/66 [00:06<00:00,  9.64it/s]
Processing PMS2P6--CCDC146:  95%|█████████▌| 63/66 [00:06<00:00,  9.64it/s]
Processing PMS2P6--CCDC146:  97%|█████████▋| 64/66 [00:06<00:00,  9.64it/s]
Processing SLC25A12--AC092623.1:  97%|█████████▋| 64/66 [00:06<00:00,  9.64it/s]
Processing SLC25A12--AC092623.1:  98%|█████████▊| 65/66 [00:06<00:00,  9.64it/s]
Processing SLC25A12--MGAT5:  98%|█████████▊| 65/66 [00:06<00:00,  9.64it/s]     
Processing SLC25A12--MGAT5: 100%|██████████| 66/66 [00:06<00:00,  9.64it/s]
Processing SLC25A12--MGAT5: 100%|██████████| 66/66 [00:06<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory