[W::hts_idx_load3] The index file is older than the data file: 659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	359156665
Known Splicing Events:	354294738
Partial Novel Splicing Events:	1786999
Novel Splicing Events:	2946718
Filtered Splicing Events:	128210

Total splicing  Junctions:	686661
Known Splicing Junctions:	289278
Partial Novel Splicing Junctions:	201725
Novel Splicing Junctions:	195658

===================================================================
Create BED file ...
Create Interact file ...