Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/556d03f09ec67e524440264907f29c/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/7d68944d7520cb595f315579a37c6b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/7d68944d7520cb595f315579a37c6b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/2a5c73bbe05382f282f89a9d3e3f62/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 359156665
[W::hts_idx_load3] The index file is older than the data file: 659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	359156665
Known Splicing Events:	354294738
Partial Novel Splicing Events:	1786999
Novel Splicing Events:	2946718
Filtered Splicing Events:	128210

Total splicing  Junctions:	686661
Known Splicing Junctions:	289278
Partial Novel Splicing Junctions:	201725
Novel Splicing Junctions:	195658

===================================================================
Create BED file ...
Create Interact file ...