Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/7268188ed230da29d832d2f5e468de/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/c5a117d5c082dae595e771f83e9bcf/659_epP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/7268188ed230da29d832d2f5e468de/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory