Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/180fda29a9f1f50371d63f5ef0255e/659_cuO-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/a6be607f59f97b668c18b52985ff57/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/a6be607f59f97b668c18b52985ff57/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory