File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/b77bdb319ea3fc1d9f86157b4f52db/.command.log
Size
3.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_1q-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/b77bdb319ea3fc1d9f86157b4f52db/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/b77bdb319ea3fc1d9f86157b4f52db/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/f95daf23d5998a64667aa4ddf37cb4/659_1q-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/2113fe1a37fb3f1a68ed90bf04b9e0/659_1q-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
FGFR3--TACC3
starfusion
arriba
SCX--AC234917.3
starfusion
arriba
BCAP31--PDZD4
starfusion
SNU13--LLPH
starfusion
AC243829.5--AC233699.1
starfusion
GUCY1B2--NKAIN2
starfusion
STX16--NPEPL1
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
TVP23C--CDRT4
arriba

  0%|          | 0/10 [00:00<?, ?it/s]
Processing FGFR3--TACC3:   0%|          | 0/10 [00:00<?, ?it/s]
Processing FGFR3--TACC3:  10%|█         | 1/10 [00:00<00:00,  9.20it/s]
Processing SCX--AC234917.3:  10%|█         | 1/10 [00:00<00:00,  9.20it/s]
Processing SCX--AC234917.3:  20%|██        | 2/10 [00:00<00:00,  9.45it/s]
Processing BCAP31--PDZD4:  20%|██        | 2/10 [00:00<00:00,  9.45it/s]  
Processing BCAP31--PDZD4:  30%|███       | 3/10 [00:00<00:00,  9.53it/s]
Processing SNU13--LLPH:  30%|███       | 3/10 [00:00<00:00,  9.53it/s]  
Processing SNU13--LLPH:  40%|████      | 4/10 [00:00<00:00,  9.58it/s]
Processing AC243829.5--AC233699.1:  40%|████      | 4/10 [00:00<00:00,  9.58it/s]
Processing AC243829.5--AC233699.1:  50%|█████     | 5/10 [00:00<00:00,  9.60it/s]
Processing GUCY1B2--NKAIN2:  50%|█████     | 5/10 [00:00<00:00,  9.60it/s]       
Processing GUCY1B2--NKAIN2:  60%|██████    | 6/10 [00:00<00:00,  9.61it/s]
Processing STX16--NPEPL1:  60%|██████    | 6/10 [00:00<00:00,  9.61it/s]  
Processing STX16--NPEPL1:  70%|███████   | 7/10 [00:00<00:00,  9.61it/s]
Processing TLK2--AC240565.1:  70%|███████   | 7/10 [00:00<00:00,  9.61it/s]
Processing TLK2--AC240565.1:  80%|████████  | 8/10 [00:00<00:00,  9.62it/s]
Processing TLK2P1--AC110079.1:  80%|████████  | 8/10 [00:00<00:00,  9.62it/s]
Processing TLK2P1--AC110079.1:  90%|█████████ | 9/10 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  90%|█████████ | 9/10 [00:00<00:00,  9.62it/s]     
Processing TVP23C--CDRT4: 100%|██████████| 10/10 [00:01<00:00,  9.62it/s]
Processing TVP23C--CDRT4: 100%|██████████| 10/10 [00:01<00:00,  9.58it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory